Adding sampling test algorithm

[modules/adao.git] / resources / ADAOSchemaCatalog.xml

diff --git a/resources/ADAOSchemaCatalog.xml b/resources/ADAOSchemaCatalog.xml
index 063743ee7e764e70d915aefaf09bf4ce2d6bd9ac..1b888c1b58d62a1902c6c328930e18889552c4ca 100644 (file)
--- a/resources/ADAOSchemaCatalog.xml
+++ b/resources/ADAOSchemaCatalog.xml
@@ -1,6 +1,6 @@
 <?xml version='1.0' encoding='iso-8859-1' ?>
 <!--
-  Copyright (C) 2010-2012 EDF R&D
+  Copyright (C) 2010-2014 EDF R&D
 
   This library is free software; you can redistribute it and/or
   modify it under the terms of the GNU Lesser General Public
@@ -62,30 +62,29 @@ logging.debug("CREATE Entering in CreateAssimilationStudy")
 print "Entering in the assimilation study"
 print "Name is set to........:", Name
 print "Algorithm is set to...:", Algorithm
-print "Debug is set to.......:", Debug
 
 # Create Assimilation study
 from daYacsIntegration.daStudy import *
 assim_study = daStudy(Name, Algorithm, Debug)
 
+logging.debug("CREATE Data entered are:")
+
 # Algorithm parameters
 try:
   AlgorithmParameters
 except NameError:
   pass
 else:
+  logging.debug("CREATE AlgorithmParameters is %s"%AlgorithmParameters)
   assim_study.setAlgorithmParameters(AlgorithmParameters)
 
-# Data
-# print "Data entered are:"
-
 # Background
 try:
   Background
 except NameError:
   pass
 else:
-  logging.debug("CREATE Background is %s"%Background)
+  logging.debug("CREATE Background is set")
   logging.debug("CREATE BackgroundType is %s"%BackgroundType)
   logging.debug("CREATE BackgroundStored is %s"%BackgroundStored)
   assim_study.setBackgroundType(BackgroundType)
@@ -98,23 +97,25 @@ try:
 except NameError:
   pass
 else:
-  logging.debug("CREATE CheckingPoint is %s"%CheckingPoint)
+  logging.debug("CREATE CheckingPoint is set")
   logging.debug("CREATE CheckingPointType is %s"%CheckingPointType)
   logging.debug("CREATE CheckingPointStored is %s"%CheckingPointStored)
   assim_study.setCheckingPointType(CheckingPointType)
   assim_study.setCheckingPointStored(CheckingPointStored)
   assim_study.setCheckingPoint(CheckingPoint)
 
-# BackgroundError
+# ControlInput
 try:
-  BackgroundError
+  ControlInput
 except NameError:
   pass
 else:
-  logging.debug("CREATE BackgroundError is %s"%BackgroundError)
-  logging.debug("CREATE BackgroundErrorStored is %s"%BackgroundErrorStored)
-  assim_study.setBackgroundErrorStored(BackgroundErrorStored)
-  assim_study.setBackgroundError(BackgroundError)
+  logging.debug("CREATE ControlInput is set")
+  logging.debug("CREATE ControlInputType is %s"%ControlInputType)
+  logging.debug("CREATE ControlInputStored is %s"%ControlInputStored)
+  assim_study.setControlInputType(ControlInputType)
+  assim_study.setControlInputStored(ControlInputStored)
+  assim_study.setControlInput(ControlInput)
 
 # Observation
 try:
@@ -122,21 +123,36 @@ try:
 except NameError:
   pass
 else:
-  logging.debug("CREATE Observation is %s"%Observation)
+  logging.debug("CREATE Observation is set")
   logging.debug("CREATE ObservationType is %s"%ObservationType)
   logging.debug("CREATE ObservationStored is %s"%ObservationStored)
   assim_study.setObservationType(ObservationType)
   assim_study.setObservationStored(ObservationStored)
   assim_study.setObservation(Observation)
 
+# BackgroundError
+try:
+  BackgroundError
+except NameError:
+  pass
+else:
+  logging.debug("CREATE BackgroundError is set")
+  logging.debug("CREATE BackgroundErrorType is %s"%BackgroundErrorType)
+  logging.debug("CREATE BackgroundErrorStored is %s"%BackgroundErrorStored)
+  assim_study.setBackgroundErrorType(BackgroundErrorType)
+  assim_study.setBackgroundErrorStored(BackgroundErrorStored)
+  assim_study.setBackgroundError(BackgroundError)
+
 # ObservationError
 try:
   ObservationError
 except NameError:
   pass
 else:
-  logging.debug("CREATE ObservationError is %s"%ObservationError)
+  logging.debug("CREATE ObservationError is set")
+  logging.debug("CREATE ObservationErrorType is %s"%ObservationErrorType)
   logging.debug("CREATE ObservationErrorStored is %s"%ObservationErrorStored)
+  assim_study.setObservationErrorType(ObservationErrorType)
   assim_study.setObservationErrorStored(ObservationErrorStored)
   assim_study.setObservationError(ObservationError)
 
@@ -146,8 +162,10 @@ try:
 except NameError:
   pass
 else:
-  logging.debug("CREATE EvolutionError is %s"%EvolutionError)
+  logging.debug("CREATE EvolutionError is set")
+  logging.debug("CREATE EvolutionErrorType is %s"%EvolutionErrorType)
   logging.debug("CREATE EvolutionErrorStored is %s"%EvolutionErrorStored)
+  assim_study.setEvolutionErrorType(EvolutionErrorType)
   assim_study.setEvolutionErrorStored(EvolutionErrorStored)
   assim_study.setEvolutionError(EvolutionError)
 
@@ -158,7 +176,7 @@ try:
 except NameError:
   pass
 else:
-  logging.debug("CREATE ObservationOperator is %s"%ObservationOperator)
+  logging.debug("CREATE ObservationOperator is set")
   logging.debug("CREATE ObservationOperatorType is %s"%ObservationOperatorType)
   assim_study.setObservationOperatorType("Matrix", ObservationOperatorType)
   assim_study.setObservationOperator("Matrix", ObservationOperator)
@@ -197,7 +215,7 @@ try:
 except NameError:
   pass
 else:
-  logging.debug("CREATE EvolutionModel is %s"%EvolutionModel)
+  logging.debug("CREATE EvolutionModel is set")
   logging.debug("CREATE EvolutionModelType is %s"%EvolutionModelType)
   assim_study.setEvolutionModelType("Matrix", EvolutionModelType)
   assim_study.setEvolutionModel("Matrix", EvolutionModel)
@@ -236,7 +254,7 @@ for name, size in zip(OutputVariablesNames, OutputVariablesSizes):
   assim_study.setOutputVariable(name, size)
 
 if has_observers:
-  logging.debug("CREATE Observers is %s"%observers.keys())
+  logging.debug("CREATE Observers keys are %s"%observers.keys())
   # Adding observers to the study
   for observer_name in observers.keys():
     scheduler = ""
@@ -277,26 +295,100 @@ logging.debug("CREATE Matrix is %s"%matrix)
     <outport name="stored" type="bool"/>
   </inline>
 
+  <inline name="CreateNumpyScalarSparseMatrixFromString">
+    <script><code><![CDATA[
+import numpy, logging
+logging.debug("CREATE Entering in CreateNumpyScalarSparseMatrixFromString")
+matrix = numpy.matrix(matrix_in_string)
+type = "ScalarSparseMatrix"
+logging.debug("CREATE ScalarSparseMatrix is %s"%matrix)
+]]></code></script>
+    <inport name="matrix_in_string" type="string"/>
+    <outport name="matrix" type="pyobj"/>
+    <outport name="type" type="string"/>
+    <outport name="stored" type="bool"/>
+  </inline>
+
+  <inline name="CreateNumpyDiagonalSparseMatrixFromString">
+    <script><code><![CDATA[
+import numpy, logging
+logging.debug("CREATE Entering in CreateNumpyDiagonalSparseMatrixFromString")
+matrix = numpy.matrix(matrix_in_string)
+type = "DiagonalSparseMatrix"
+logging.debug("CREATE DiagonalSparseMatrix is %s"%matrix)
+]]></code></script>
+    <inport name="matrix_in_string" type="string"/>
+    <outport name="matrix" type="pyobj"/>
+    <outport name="type" type="string"/>
+    <outport name="stored" type="bool"/>
+  </inline>
+
   <inline name="CreateNumpyMatrixFromScript">
     <script><code><![CDATA[
-import logging
+import logging, sys, os
 logging.debug("CREATE Entering in CreateNumpyMatrixFromScript")
 type = "Matrix"
 
 # Get file path and filename
-import sys
-import os
+try:
+    if sys.path.count(studydir)==0 or (sys.path.count(studydir)>0 and sys.path.index(studydir)>0):
+        sys.path.insert(0,studydir)
+except:
+    pass
 filepath = os.path.dirname(script)
 filename = os.path.basename(script)
 module_name = os.path.splitext(filename)[0]
-if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath,0,1)>0):
+if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath)>0):
     sys.path.insert(0,filepath)
 
-# Import script
-__import__(module_name)
-user_script_module = sys.modules[module_name]
+]]></code></script>
+    <inport name="script" type="string"/>
+    <outport name="type" type="string"/>
+    <outport name="stored" type="bool"/>
+  </inline>
+
+  <inline name="CreateNumpyScalarSparseMatrixFromScript">
+    <script><code><![CDATA[
+import logging, sys, os
+logging.debug("CREATE Entering in CreateNumpyScalarSparseMatrixFromScript")
+type = "ScalarSparseMatrix"
+
+# Get file path and filename
+try:
+    if sys.path.count(studydir)==0 or (sys.path.count(studydir)>0 and sys.path.index(studydir)>0):
+        sys.path.insert(0,studydir)
+except:
+    pass
+filepath = os.path.dirname(script)
+filename = os.path.basename(script)
+module_name = os.path.splitext(filename)[0]
+if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath)>0):
+    sys.path.insert(0,filepath)
+
+]]></code></script>
+    <inport name="script" type="string"/>
+    <outport name="type" type="string"/>
+    <outport name="stored" type="bool"/>
+  </inline>
+
+  <inline name="CreateNumpyDiagonalSparseMatrixFromScript">
+    <script><code><![CDATA[
+import logging, sys, os
+logging.debug("CREATE Entering in CreateNumpyDiagonalSparseMatrixFromScript")
+type = "DiagonalSparseMatrix"
+
+# Get file path and filename
+try:
+    if sys.path.count(studydir)==0 or (sys.path.count(studydir)>0 and sys.path.index(studydir)>0):
+        sys.path.insert(0,studydir)
+except:
+    pass
+filepath = os.path.dirname(script)
+filename = os.path.basename(script)
+module_name = os.path.splitext(filename)[0]
+if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath)>0):
+    sys.path.insert(0,filepath)
 
-# Get Data from script
 ]]></code></script>
     <inport name="script" type="string"/>
     <outport name="type" type="string"/>
@@ -319,24 +411,22 @@ logging.debug("Vector is %s"%vector)
 
   <inline name="CreateNumpyVectorFromScript">
     <script><code><![CDATA[
-import logging
+import logging, sys, os
 logging.debug("CREATE Entering in CreateNumpyVectorFromScript")
 type = "Vector"
 
 # Get file path and filename
-import sys
-import os
+try:
+    if sys.path.count(studydir)==0 or (sys.path.count(studydir)>0 and sys.path.index(studydir)>0):
+        sys.path.insert(0,studydir)
+except:
+    pass
 filepath = os.path.dirname(script)
 filename = os.path.basename(script)
 module_name = os.path.splitext(filename)[0]
-if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath,0,1)>0):
+if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath)>0):
     sys.path.insert(0,filepath)
 
-# Import script
-__import__(module_name)
-user_script_module = sys.modules[module_name]
-
-# Get Data from script
 ]]></code></script>
     <inport name="script" type="string"/>
     <outport name="type" type="string"/>
@@ -347,7 +437,8 @@ user_script_module = sys.modules[module_name]
     <script><code><![CDATA[
 import numpy, logging
 logging.debug("CREATE Entering in CreateNumpyVectorSerieFromString")
-vector = numpy.matrix(vector_in_string)
+vector_in_list = eval(str(vector_in_string),{},{})
+vector = numpy.matrix(vector_in_list)
 type = "VectorSerie"
 logging.debug("VectorSerie is %s"%vector)
 ]]></code></script>
@@ -359,24 +450,22 @@ logging.debug("VectorSerie is %s"%vector)
 
   <inline name="CreateNumpyVectorSerieFromScript">
     <script><code><![CDATA[
-import logging
+import logging, sys, os
 logging.debug("CREATE Entering in CreateNumpyVectorSerieFromScript")
 type = "VectorSerie"
 
 # Get file path and filename
-import sys
-import os
+try:
+    if sys.path.count(studydir)==0 or (sys.path.count(studydir)>0 and sys.path.index(studydir)>0):
+        sys.path.insert(0,studydir)
+except:
+    pass
 filepath = os.path.dirname(script)
 filename = os.path.basename(script)
 module_name = os.path.splitext(filename)[0]
-if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath,0,1)>0):
+if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath)>0):
     sys.path.insert(0,filepath)
 
-# Import script
-__import__(module_name)
-user_script_module = sys.modules[module_name]
-
-# Get Data from script
 ]]></code></script>
     <inport name="script" type="string"/>
     <outport name="type" type="string"/>
@@ -400,7 +489,6 @@ ADD.analyze()
 #-*-coding:iso-8859-1-*-
 import logging
 logging.debug("TERMINATE Entering in SimpleUserAnalysis")
-from daYacsIntegration.daStudy import *
 ADD = Study.getAssimilationStudy()
 # User code is below
 
@@ -418,48 +506,53 @@ result = None
     <outport name="result" type="SALOME_TYPES/ParametricOutput"/>
   </inline>
 
+  <inline name="CreateDictFromString">
+    <script><code><![CDATA[
+import logging, sys, os
+logging.debug("CREATE Entering in CreateDictFromString")
+dico = eval(dict_in_string)
+]]></code></script>
+    <inport name="dict_in_string" type="string"/>
+  </inline>
+
   <inline name="CreateDictFromScript">
     <script><code><![CDATA[
-import logging
+import logging, sys, os
 logging.debug("CREATE Entering in CreateDictFromScript")
 
 # Get file path and filename
-import sys
-import os
+try:
+    if sys.path.count(studydir)==0 or (sys.path.count(studydir)>0 and sys.path.index(studydir)>0):
+        sys.path.insert(0,studydir)
+except:
+    pass
 filepath = os.path.dirname(script)
 filename = os.path.basename(script)
 module_name = os.path.splitext(filename)[0]
-if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath,0,1)>0):
+if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath)>0):
     sys.path.insert(0,filepath)
 
-# Import script
-__import__(module_name)
-user_script_module = sys.modules[module_name]
-
-# Get Data from script
 ]]></code></script>
     <inport name="script" type="string"/>
   </inline>
 
   <inline name="UserDataInitFromScript">
     <script><code><![CDATA[
-import logging
+import logging, sys, os
 logging.debug("CREATE Entering in UserDataInitFromScript")
 
 # Get file path and filename
-import sys
-import os
+try:
+    if sys.path.count(studydir)==0 or (sys.path.count(studydir)>0 and sys.path.index(studydir)>0):
+        sys.path.insert(0,studydir)
+except:
+    pass
 filepath = os.path.dirname(script)
 filename = os.path.basename(script)
 module_name = os.path.splitext(filename)[0]
-if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath,0,1)>0):
+if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath)>0):
     sys.path.insert(0,filepath)
 
-# Import script
-__import__(module_name)
-user_script_module = sys.modules[module_name]
-
-# Get Data from script
 ]]></code></script>
     <inport name="script" type="string"/>
     <outport name="init_data" type="pyobj"/>
@@ -501,20 +594,13 @@ for param in data["specificParameters"]:
   </inline>
 
   <inline name="ObservationNodeString">
-    <script><code><![CDATA[
-#print "Entering in Observation"
-
-]]></code></script>
+    <script><code><![CDATA[]]></code></script>
     <inport name="var" type="pyobj"/>
     <inport name="info" type="pyobj"/>
   </inline>
 
   <inline name="ObservationNodeFile">
-    <script><code><![CDATA[
-#print "Entering in Observation"
-execfile(script)
-
-]]></code></script>
+    <script><code><![CDATA[execfile(script)]]></code></script>
     <inport name="var"    type="pyobj"/>
     <inport name="info"   type="pyobj"/>
     <inport name="script" type="string"/>