echo "##########################################################################"
# we don't install in python directory -> modify environment as described in INSTALL file
-mkdir -p $PRODUCT_INSTALL/lib/python${PYTHON_VERSION:0:3}/site-packages
+
+mkdir -p $PRODUCT_INSTALL/lib/python${PYTHON_VERSION}/site-packages
export PATH=$(pwd)/bin:$PATH
export PYTHONPATH=$(pwd):$PYTHONPATH
-export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION:0:3}/site-packages:$PYTHONPATH
+export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages:$PYTHONPATH
CMAKE_OPTIONS=""
-if [-n "$SAT_HPC" ] && [ -n "$MPI_ROOT_DIR" ]; then
+if [ -n "$SAT_HPC" ] && [ -n "$MPI_ROOT_DIR" ]; then
echo "WARNING: setting CC and CXX environment variables and target MPI wrapper"
CMAKE_OPTIONS+=" -DCMAKE_CXX_COMPILER:STRING=${MPI_CXX_COMPILER}"
CMAKE_OPTIONS+=" -DCMAKE_C_COMPILER:STRING=${MPI_C_COMPILER}"
fi
CMAKE_OPTIONS+=" -DCMAKE_INSTALL_PREFIX:STRING=${PRODUCT_INSTALL}"
+CMAKE_OPTIONS+=" -DCMAKE_INSTALL_LIBDIR:STRING=lib"
CMAKE_OPTIONS+=" -DCMAKE_BUILD_TYPE:STRING=Release"
CMAKE_OPTIONS+=" -DPYTHON_EXECUTABLE=${PYTHONBIN}"
-CMAKE_OPTIONS+=" -DSWIG_EXECUTABLE=${SWIG_ROOT_DIR}/bin/swig"
-if [ -n "$TBB_ROOT_DIR" ] && [ "${TBB_ROOT_DIR}" != "/usr" ]; then
+if [ -n "$SWIG_ROOT_DIR" ] && [ "$SAT_swig_IS_NATIVE" != "1" ]; then
+ CMAKE_OPTIONS+=" -DSWIG_EXECUTABLE=${SWIG_ROOT_DIR}/bin/swig"
+fi
+
+if [ -n "$TBB_ROOT_DIR" ] && [ "$SAT_tbb_IS_NATIVE" != "1" ]; then
CMAKE_OPTIONS+=" -DTBB_ROOT_DIR=${TBB_ROOT_DIR}"
fi
+# https://github.com/persalys/persalys/issues/745
+LINUX_DISTRIBUTION="$DIST_NAME$DIST_VERSION"
+case $LINUX_DISTRIBUTION in
+ UB22*|CO8*|CO9*|FD36)
+ echo "WARNING: switching OFF TBB support"
+ CMAKE_OPTIONS+=" -DUSE_TBB=OFF"
+ ;;
+ *)
+ ;;
+esac
+
+# Blas/Lapack
+if [ -n "$LAPACK_ROOT_DIR" ] && [ "$SAT_lapack_IS_NATIVE" != "1" ]; then
+ CMAKE_OPTIONS+=" -DLAPACK_DIR=${LAPACK_ROOT_DIR}/lib/cmake/lapack-3.8.0"
+ CMAKE_OPTIONS+=" -DCBLAS_DIR=${LAPACK_ROOT_DIR}/lib/cmake/cblas-3.8.0"
+ CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libcblas.so"
+ CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libblas.so"
+fi
+
### libxml2 settings
-if [ -n "$LIBXML2_ROOT_DIR" ] && [ "${LIBXML2_ROOT_DIR}" != "/usr" ]; then
+if [ -n "$LIBXML2_ROOT_DIR" ] && [ "$SAT_libxml2_IS_NATIVE" != "1" ]; then
CMAKE_OPTIONS+=" -DLIBXML2_INCLUDE_DIR:STRING=${LIBXML2_ROOT_DIR}/include/libxml2"
CMAKE_OPTIONS+=" -DLIBXML2_LIBRARIES:STRING=${LIBXML2_ROOT_DIR}/lib/libxml2.so"
CMAKE_OPTIONS+=" -DLIBXML2_XMLLINT_EXECUTABLE=${LIBXML2_ROOT_DIR}/bin/xmllint"
fi
# HDF5
-if [ -n "$HDF5_ROOT_DIR" ] && [ "${HDF5_ROOT_DIR}" != "/usr" ]; then
+if [ -n "$HDF5_ROOT_DIR" ] && [ "$SAT_hdf5_IS_NATIVE" != "1" ]; then
CMAKE_OPTIONS+=" -DHDF5_DIR:PATH=${HDF5_ROOT_DIR}/share/cmake/hdf5"
CMAKE_OPTIONS+=" -DHDF5_USE_STATIC_LIBRARIES:BOOL=OFF"
CMAKE_OPTIONS+=" -DHDF5_ROOT:PATH=${HDF5_ROOT_DIR}"
fi
# CMINPACK
-if [ -n "$CMINPACK_ROOT_DIR" ] && [ "${CMINPACK_ROOT_DIR}" != "/usr" ]; then
+if [ -n "$CMINPACK_ROOT_DIR" ] && [ "$SAT_cminpack_IS_NATIVE" != "1" ]; then
CMAKE_OPTIONS+=" -DCMINPACK_ROOT_DIR=${CMINPACK_ROOT_DIR}"
CMAKE_OPTIONS+=" -DCMINPACK_INCLUDE_DIR=${CMINPACK_ROOT_DIR}/include/cminpack-1"
CMAKE_OPTIONS+=" -DCMINPACK_LIBRARY=$CMINPACK_ROOT_DIR/lib/libcminpack_s.a"
fi
# Blas/Lapack
-if [ -n "$LAPACK_ROOT_DIR" ] && [ "${LAPACK_ROOT_DIR}" != "/" ]; then
+if [ -n "$LAPACK_ROOT_DIR" ] && [ "$SAT_lapack_IS_NATIVE" != "1" ]; then
CMAKE_OPTIONS+=" -DLAPACK_DIR=${LAPACK_ROOT_DIR}/lib/cmake/lapack-3.8.0"
CMAKE_OPTIONS+=" -DCBLAS_DIR=${LAPACK_ROOT_DIR}/lib/cmake/cblas-3.8.0"
CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libcblas.so"
CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libblas.so"
fi
-if [[ $DIST_NAME == "CO" && $DIST_VERSION == "8" && $APPLICATION_NAME =~ native && -f /usr/lib64/libcblas.so && -f /usr/lib64/libblas.so ]]; then
+if [[ $DIST_NAME == "CO" && $DIST_VERSION == "8" && -f /usr/lib64/libcblas.so && -f /usr/lib64/libblas.so ]]; then
CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=/usr/lib64/libcblas.so"
CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=/usr/lib64/libblas.so"
fi
### libxml2 settings
-if [ -n "$LIBXML2_ROOT_DIR" ] && [ "${LIBXML2_ROOT_DIR}" != "/usr" ]; then
+if [ -n "$LIBXML2_ROOT_DIR" ] && [ "$SAT_libxml2_IS_NATIVE" != "1" ]; then
CMAKE_OPTIONS+=" -DLIBXML2_INCLUDE_DIR:STRING=${LIBXML2_ROOT_DIR}/include/libxml2"
CMAKE_OPTIONS+=" -DLIBXML2_LIBRARIES:STRING=${LIBXML2_ROOT_DIR}/lib/libxml2.so"
CMAKE_OPTIONS+=" -DLIBXML2_XMLLINT_EXECUTABLE=${LIBXML2_ROOT_DIR}/bin/xmllint"
fi
## nlopt
-if [ -n "$NLOPT_ROOT_DIR" ] && [ "${NLOPT_ROOT_DIR}" != "/usr" ]; then
+if [ -n "$NLOPT_ROOT_DIR" ] && [ "$SAT_nlopt_IS_NATIVE" != "1" ]; then
CMAKE_OPTIONS+=" -DNLOPT_INCLUDE_DIRS:STRING=${NLOPT_ROOT_DIR}/include"
CMAKE_OPTIONS+=" -DNLOPT_LIBRARIES:STRING=${NLOPT_ROOT_DIR}/lib"
CMAKE_OPTIONS+=" -DNLOPT_DIR:STRING=${NLOPT_ROOT_DIR}"
fi
+
+
echo
echo "*** cmake" $CMAKE_OPTIONS
+
mkdir -p $BUILD_DIR/openturns
+mkdir -p $BUILD_DIR/cache/pip
cd $BUILD_DIR/openturns
cmake $CMAKE_OPTIONS $SOURCE_DIR/openturns-1.18
if [ $? -ne 0 ]
export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages:${PYTHONPATH}
export LD_LIBRARY_PATH=${PRODUCT_INSTALL}/lib:${LD_LIBRARY_PATH}
chmod +x ${SOURCE_DIR}/openturns-1.18/python/test/t_features.py
-${SOURCE_DIR}/openturns-1.18/python/test/t_features.py
+${PYTHONBIN} ${SOURCE_DIR}/openturns-1.18/python/test/t_features.py
if [ $? -ne 0 ]
then
echo "ERROR testing Openturns features...."
CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF"
elif [[ $k == "otfftw" ]]; then
CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
+ elif [ $k == "otmorris" ] && [ "$DIST_NAME$DIST_VERSION" == "FD32" ]; then
+ CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
+ CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF" # missing package to be installed.
elif [[ $k == "otpmml" ]]; then
CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
fi
do
echo
echo "*** C O M P O N E N T : $k-${OTP[$k]} "
-
- if [[ $DIST_NAME == "DB" && $DIST_VERSION == "10" && $APPLICATION_NAME =~ native && $k == "otfmi" ]]; then
- echo "INFO: install dill-0.3.4"
- ${PYTHONBIN} -m pip install $SOURCE_DIR/dill-0.3.4/dill-0.3.4-py2.py3-none-any.whl --no-deps --prefix=$PRODUCT_INSTALL
- if [ $? -ne 0 ]
- then
- echo "FATAL: could not install dill-0.3.4"
- exit 6
- fi
- fi
- if [[ $DIST_NAME == "DB" && $DIST_VERSION == "10" && $APPLICATION_NAME =~ native && $k == "otpod" ]]; then
- echo "INFO: install scikit-learn-0.24.2"
- ${PYTHONBIN} -m pip install $SOURCE_DIR/scikit-learn-0.24.2/scikit-learn-0.24.2.tar.gz --no-deps --prefix=$PRODUCT_INSTALL
- if [ $? -ne 0 ]
- then
- echo "FATAL: could not install scikit-0.24.2"
- exit 6
- fi
- echo "INFO: install threadpoolctl-3.0.0"
- ${PYTHONBIN} -m pip install $SOURCE_DIR/threadpoolctl-3.0.0/threadpoolctl-3.0.0-py3-none-any.whl --no-deps --prefix=$PRODUCT_INSTALL
- if [ $? -ne 0 ]
- then
- echo "FATAL: could not install threadpoolctl 3.0.0"
- exit 6
+
+ if [ "$SAT_Python_IS_NATIVE" == "1" ]; then
+ if [ $k == "otfmi" ]; then
+ echo "INFO: install dill-0.3.4"
+ ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/dill-0.3.4/dill-0.3.4-py2.py3-none-any.whl --no-deps --prefix=$PRODUCT_INSTALL
+ if [ $? -ne 0 ]
+ then
+ echo "FATAL: could not install dill-0.3.4"
+ exit 6
+ fi
+ elif [ $k == "otpod" ]; then
+ if [[ $DIST_NAME == "CO" && $DIST_VERSION == "8" ]]; then
+ echo "*** skipping: since system Cython too old"
+ continue
+ fi
+ echo "INFO: install scikit-learn-0.24.2"
+ ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/scikit-learn-0.24.2/scikit-learn-0.24.2.tar.gz --no-deps --prefix=$PRODUCT_INSTALL
+ if [ $? -ne 0 ]
+ then
+ echo "FATAL: could not install scikit-0.24.2"
+ exit 6
+ fi
+ echo "INFO: install threadpoolctl-3.0.0"
+ ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/threadpoolctl-3.0.0/threadpoolctl-3.0.0-py3-none-any.whl --no-deps --prefix=$PRODUCT_INSTALL
+ if [ $? -ne 0 ]
+ then
+ echo "FATAL: could not install threadpoolctl 3.0.0"
+ exit 6
+ fi
fi
- fi
- if [[ $DIST_NAME == "CO" && $DIST_VERSION == "8" && $APPLICATION_NAME =~ native && $k == "otpod" ]]; then
- echo "*** skipping: since system Cython too old"
- continue
- fi
- # For non native builds install everything, since Python is embedded
- if [[ ! $APPLICATION_NAME =~ native ]]; then
+ else # non native Python
if [[ $k == "otfmi" ]]; then
echo "INFO: install dill-0.3.4"
- ${PYTHONBIN} -m pip install $SOURCE_DIR/dill-0.3.4/dill-0.3.4-py2.py3-none-any.whl --no-deps
+ ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/dill-0.3.4/dill-0.3.4-py2.py3-none-any.whl --no-deps
if [ $? -ne 0 ]
then
echo "FATAL: could not install dikk-0.3.4"
fi
elif [[ $k == "otpod" ]]; then
echo "INFO: install threadpoolctl-3.0.0"
- ${PYTHONBIN} -m pip install $SOURCE_DIR/threadpoolctl-3.0.0/threadpoolctl-3.0.0-py3-none-any.whl --no-deps
+ ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/threadpoolctl-3.0.0/threadpoolctl-3.0.0-py3-none-any.whl --no-deps
if [ $? -ne 0 ]
then
echo "FATAL: could not install readpoolctl 3.0.0"
exit 6
fi
echo "INFO: install joblib-1.1.0"
- ${PYTHONBIN} -m pip install $SOURCE_DIR/joblib-1.1.0/joblib-1.1.0-py2.py3-none-any.whl --no-deps
+ ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/joblib-1.1.0/joblib-1.1.0-py2.py3-none-any.whl --no-deps
if [ $? -ne 0 ]
then
echo "FATAL: could not install joblib-1.1.0"
exit 6
fi
echo "INFO: install decorator-5.1.0"
- ${PYTHONBIN} -m pip install $SOURCE_DIR/decorator-5.1.0/decorator-5.1.0-py3-none-any.whl --no-deps
+ ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/decorator-5.1.0/decorator-5.1.0-py3-none-any.whl --no-deps
if [ $? -ne 0 ]
then
echo "FATAL: could not install decorator-5.1.0"
exit 6
fi
echo "INFO: install scikit-learn-0.24.2"
- ${PYTHONBIN} -m pip install $SOURCE_DIR/scikit-learn-0.24.2/scikit-learn-0.24.2.tar.gz --no-deps
- if [ $? -ne 0 ]
- then
- echo "FATAL: could not install scikit-0.24.2"
- exit 6
- fi
- fi
- else
- if [[ $DIST_NAME == "FD" && $DIST_VERSION == "32" && $k == "otpod" ]]; then
- echo "INFO: install scikit-learn-0.24.2"
- ${PYTHONBIN} -m pip install $SOURCE_DIR/scikit-learn-0.24.2/scikit-learn-0.24.2.tar.gz --no-deps --prefix=$PRODUCT_INSTALL
+ ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/scikit-learn-0.24.2/scikit-learn-0.24.2.tar.gz --no-deps
if [ $? -ne 0 ]
then
echo "FATAL: could not install scikit-0.24.2"
exit 5
fi
done
+
+ #
+ # O P E N T U R N S
+ #
+ if [ -f ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py ]; then
+ echo "INFO: site.py already installed"
+ elif [ "$SAT_Python_IS_NATIVE" == "1" ]; then
+ # check first whether the init.py file is installed
+ echo "WARNING: missing init.py file. Installing it from system Python installation"
+ SITE_PATCH=
+ LINUX_DISTRIBUTION="$DIST_NAME$DIST_VERSION"
+ case $LINUX_DISTRIBUTION in
+ DB11)
+ SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
+ ;;
+ DB10)
+ SITE_PATCH=/usr/lib/python3/dist-packages/setuptools/site-patch.py
+ ;;
+ UB22*)
+ SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
+ ;;
+ UB20*)
+ SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
+ ;;
+ FD32)
+ SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
+ ;;
+ FD36)
+ ###SITE_PATCH=
+ SITE_PATCH=$SOURCE_DIR/addons/site-patch.py
+ ;;
+ FD34)
+ ###SITE_PATCH=
+ SITE_PATCH=$SOURCE_DIR/addons/site-patch.py
+ ;;
+ CO8*)
+ SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
+ ;;
+ *)
+ SITE_PATCH=$SOURCE_DIR/addons/site-patch.py
+ ;;
+ esac
+ # check whether this file exists
+ if [ "${SITE_PATCH}" == "" ]; then
+ cp $SOURCE_DIR/addons/site-patch.py ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py
+ else
+ cp $SITE_PATCH ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py
+ fi
+ elif [ -f ${PYTHON_ROOT_DIR}/lib/python${PYTHON_VERSION}/site-packages/setuptools/site-patch.py ]; then
+ cp ${PYTHON_ROOT_DIR}/lib/python${PYTHON_VERSION}/site-packages/setuptools/site-patch.py ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py
+ else
+ echo "ERROR: could not find site-patch.py"
+ exit 7
+ fi
+fi
+
+cd ${PRODUCT_INSTALL}/lib
+# On some nodes, the link to OT is not done properly.
+if [[ ! -f libOT.so.0 ]]; then
+ echo "INFO: Fixing libOT.so"
+ ln -sf libOT.so.0.19.0 libOT.so.0.19
+ ln -sf libOT.so.0.19 libOT.so.0
+ ln -sf libOT.so.0 libOT.so
fi
echo
