# Project name
project (SOLVERLAB C CXX)
-set (SOLVERLAB_VERSION_MAJOR 0)
-set (SOLVERLAB_VERSION_MINOR 1)
+set (SOLVERLAB_VERSION_MAJOR 9)
+set (SOLVERLAB_VERSION_MINOR 7)
+set (SOLVERLAB_VERSION_SUBMINOR alpha)
option (SOLVERLAB_WITH_DOCUMENTATION "Generate SOLVERLAB documentation" ON)
-option (SOLVERLAB_WITH_PYTHON "Compile Python interface of SOLVERLAB" ON)
+option (SOLVERLAB_WITH_PYTHON "Generate Python interface of SOLVERLAB using SWIG" ON)
option (SOLVERLAB_WITH_GUI "Compile a Graphic user Interface for SOLVERLAB" OFF)
option (SOLVERLAB_WITH_PACKAGE "Generate RPM, Debian and tarball packages" OFF)
option (SOLVERLAB_WITH_COREFLOWS "Generate COREFLOWS module" ON)
option (SOLVERLAB_WITH_TESTS "Generate SOLVERLAB example tests" ON)
+option (SOLVERLAB_WITH_MPI "Generate a parallel version of SOLVERLAB" OFF)
#Path to installed libraries
set (PETSC_DIR OFF CACHE STRING "PETSc library path" )
set (HDF5_ROOT OFF CACHE STRING "HDF5 library path" )#For the compilation of MED with a specific version of HDF5
set (MEDFILE_ROOT_DIR OFF CACHE STRING "MED library path" )
set (MEDCOUPLING_ROOT_DIR OFF CACHE STRING "MEDCoupling library path" )
+set (PYTHON_ROOT_DIR OFF CACHE STRING "Python library path" )
+set (PARAVIEW_ROOT_DIR OFF CACHE STRING "PARAVIEW library path" )
+set (MPI4PY_ROOT_DIR OFF CACHE STRING "MPI4PY library path" )
#url of tarball librairies
-set (DOWNLOAD_PETSC http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-lite-3.13.5.tar.gz
+set (DOWNLOAD_PETSC http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-3.16.0.tar.gz
CACHE STRING "PETSc tarball path/url" )
-set (DOWNLOAD_SLEPC https://slepc.upv.es/download/distrib/slepc-3.13.4.tar.gz
+set (DOWNLOAD_SLEPC https://slepc.upv.es/download/distrib/slepc-3.16.0.tar.gz
CACHE STRING "SLEPC tarball path/url" )
set (DOWNLOAD_F2CBLASLAPACK https://www.mcs.anl.gov/petsc/mirror/externalpackages/f2cblaslapack-3.4.2.q4.tar.gz
CACHE STRING "F2CBLASLAPACK tarball path/url" )
CACHE STRING "HDF5 tarball path/url" )
set (DOWNLOAD_MED http://files.salome-platform.org/Salome/other/med-4.1.0.tar.gz
CACHE STRING "MED tarball path/url")
-set (DOWNLOAD_MEDCOUPLING http://files.salome-platform.org/Salome/other/medCoupling-9.4.0.tar.gz
+set (DOWNLOAD_MEDCOUPLING http://files.salome-platform.org/Salome/other/medCoupling-9.7.0.tar.gz
CACHE STRING "MEDCoupling tarball path/url" )
+set (DOWNLOAD_OPENMPI https://download.open-mpi.org/release/open-mpi/v3.1/openmpi-3.1.6.tar.gz
+ CACHE STRING "OPENMPI tarball path/url" )
+set (DOWNLOAD_HYPRE https://github.com/hypre-space/hypre/archive/v2.23.0.zip
+ CACHE STRING "HYPRE tarball path/url" )
+set (DOWNLOAD_MPI4PY https://bitbucket.org/mpi4py/mpi4py/downloads/mpi4py-3.1.2.tar.gz
+ CACHE STRING "MPY4PY tarball path/url" )
set (CMAKE_BUILD_TYPE Release CACHE STRING "Installation mode")
+include(ExternalProject)#For PETSc, MED and MEDCoupling
+
list (APPEND CMAKE_MODULE_PATH "${SOLVERLAB_SOURCE_DIR}/cmake_files")
-include(ExternalProject)#For PETSc, MED and MEDCoupling
-ADD_DEFINITIONS(-DWITH_NUMPY)
+#####################
+# Detection of MPI #
+#####################
+if ( DEFINED ENV{MPI_ROOT_DIR} OR DEFINED MPI_ROOT_DIR )
+ if ( DEFINED ENV{MPI_ROOT_DIR} )
+ set(MPI_HOME $ENV{MPI_ROOT_DIR})
+ else ( DEFINED ENV{MPI_ROOT_DIR} )
+ set(MPI_HOME ${MPI_ROOT_DIR})
+ endif( DEFINED ENV{MPI_ROOT_DIR} )
+endif( DEFINED ENV{MPI_ROOT_DIR} OR DEFINED MPI_ROOT_DIR )
+
+# Definition of SOLVERLAB_WITH_MPI
+if( DEFINED ENV{MPI_HOME} OR MPI_HOME )
+ set(SOLVERLAB_WITH_MPI ON)
+ find_package(MPI)
+ if( ${MPI_LIBRARY} STREQUAL "MPI_LIBRARY-NOTFOUND")
+ set ( MPI_LIBRARY ${MPI_HOME}/lib/libmpi.so )
+ endif(${MPI_LIBRARY} STREQUAL "MPI_LIBRARY-NOTFOUND")
+ message ( STATUS "MPI executable is ${MPIEXEC}" )
+else( DEFINED ENV{MPI_HOME} OR MPI_HOME )
+ set(SOLVERLAB_WITH_MPI OFF)
+endif( DEFINED ENV{MPI_HOME} OR MPI_HOME )
+
+# Definition of MPI4PY_ROOT_DIR
+if( ${SOLVERLAB_WITH_PYTHON} AND ${SOLVERLAB_WITH_MPI} AND NOT ${MPI4PY_ROOT_DIR})
+ message(STATUS "Defining MPI4PY directory" )
+ if( DEFINED ENV{MPI4PY_ROOT_DIR})
+ set(MPI4PY_ROOT_DIR $ENV{MPI4PY_ROOT_DIR})
+ else( DEFINED ENV{MPI4PY_ROOT_DIR})
+ set(MPI4PY_ROOT_DIR ${PETSC_DIR}/${PETSC_ARCH}/lib/mpi4py)
+ endif( DEFINED ENV{MPI4PY_ROOT_DIR})
+endif(${SOLVERLAB_WITH_PYTHON} AND ${SOLVERLAB_WITH_MPI} AND NOT ${MPI4PY_ROOT_DIR})
+
+if( MPI4PY_ROOT_DIR)
+ message(STATUS "MPI4PY directory is ${MPI4PY_ROOT_DIR}" )
+ SET(CMAKE_SWIG_FLAGS ${CMAKE_SWIG_FLAGS} -DMPI4PY_ROOT_DIR=${MPI4PY_ROOT_DIR})
+endif( MPI4PY_ROOT_DIR)
+
+############################
+# Definition of HDF5_ROOT #
+############################
+if ( DEFINED ENV{HDF5_ROOT_DIR} OR DEFINED HDF5_ROOT_DIR )
+ if ( DEFINED ENV{HDF5_ROOT_DIR} )
+ set(HDF5_ROOT $ENV{HDF5_ROOT_DIR})
+ else ( DEFINED ENV{HDF5_ROOT_DIR} )
+ set(HDF5_ROOT ${HDF5_ROOT_DIR})
+ endif( DEFINED ENV{HDF5_ROOT_DIR} )
+endif( DEFINED ENV{HDF5_ROOT_DIR} OR DEFINED HDF5_ROOT_DIR )
######################################################
# Detection or compilation of PETSc+SLEPc+HDF5 #
petsc_get_version ()
message ( STATUS "PETSc found. Version is ${PETSC_VERSION_MAJOR}.${PETSC_VERSION_MINOR}.${PETSC_VERSION_SUBMINOR}" )
+ message ( STATUS "PETSc compiler is ${PETSC_COMPILER}" )
+ message ( STATUS "PETSc executable is ${PETSC_MPIEXEC}")
+
set(PETSC_INSTALL ${PETSC_DIR})
#Define and search slepc variables
set(HDF5_ROOT ${PETSC_DIR}/${PETSC_ARCH})# define hint for hdf5/med installation in petsc external packages
endif( DEFINED ENV{HDF5_ROOT} )
endif( NOT HDF5_ROOT )
- set(HDF5_LIBRARY_DIR ${HDF5_ROOT}/lib)
- set(HDF5_INCLUDE_DIRS ${HDF5_ROOT}/include)
+
+ find_package(HDF5 COMPONENTS CXX HL)
+ if ( NOT HDF5_FOUND)
+ set(HDF5_LIBRARY_DIR ${HDF5_ROOT}/lib)
+ set(HDF5_INCLUDE_DIRS ${HDF5_ROOT}/include)
+ endif( NOT HDF5_FOUND)
+
else ( DEFINED ENV{PETSC_DIR} OR PETSC_DIR )
message ( STATUS "PETSC_DIR not set, searching PETSc and SLEPc in the system" )
set(PETSC_INCLUDES /usr/include/petsc /usr/include/petsc/petsc/mpiuni)
set(PETSC_LIBRARIES /usr/lib64/libpetsc.so)
- set(PETSC_VERSION "3.8") #3.8 for fedora 26 , 3.9 for fedora 29 , 3.10 for fedora 30, , 3.12 for fedora 32
+ file(STRINGS /usr/include/petsc/petscversion.h petscversion_file)
+ FOREACH(line ${petscversion_file})
+ string(FIND "${line}" "#define PETSC_VERSION_MAJOR " pos)
+ IF(NOT ${pos} EQUAL -1)
+ string(LENGTH ${line} line_length_major)#length of the line
+ MATH(EXPR petsc_version_major "${line_length_major}-1")#line ends with "x", that counts for 1 character
+ string(SUBSTRING ${line} ${petsc_version_major} 1 PETSC_VERSION_MAJOR)
+ break()
+ ENDIF(NOT ${pos} EQUAL -1)
+ ENDFOREACH(line ${petscversion_file})
+ FOREACH(line ${petscversion_file})
+ string(FIND "${line}" "#define PETSC_VERSION_MINOR " pos)
+ IF(NOT ${pos} EQUAL -1)
+ string(LENGTH ${line} line_length_minor)#length of the line
+ if(${line_length_minor} EQUAL ${line_length_major})
+ MATH(EXPR petsc_version_minor "${line_length_minor}-1")#line ends with "y", that counts for 1 character
+ string(SUBSTRING ${line} ${petsc_version_minor} 1 PETSC_VERSION_MINOR)
+ break()
+ else(${line_length_minor} EQUAL ${line_length_major})
+ MATH(EXPR petsc_version_minor "${line_length_minor}-2")#line ends with "yy", that counts for two characters
+ string(SUBSTRING ${line} ${petsc_version_minor} 2 PETSC_VERSION_MINOR)
+ endif(${line_length_minor} EQUAL ${line_length_major})
+ ENDIF(NOT ${pos} EQUAL -1)
+ ENDFOREACH(line ${petscversion_file})
+ set(PETSC_VERSION ${PETSC_VERSION_MAJOR}.${PETSC_VERSION_MINOR}) #3.8 for fedora 26 , 3.9 for fedora 29 , 3.10 for fedora 30 , 3.12 for fedora 32 , 3.14 for fedora 34 , 3.15 for fedora 35
+ message(STATUS "PETSc detected, version is ${PETSC_VERSION_MAJOR}.${PETSC_VERSION_MINOR}" )
set(CPACK_RPM_PACKAGE_REQUIRES "${CPACK_RPM_PACKAGE_REQUIRES}, petsc-devel (>= 3.4)") # This is not fully working yet.
set(PETSC_INSTALL ${PETSC_DIR})
set(SLEPC_DIR /usr/)
set(SLEPC_INCLUDES ${SLEPC_DIR}/include)
set(SLEPC_LIBRARIES ${SLEPC_DIR}/lib/libslepc.so)
+ file(STRINGS /usr/include/slepc/slepcversion.h slepcversion_file)
+ FOREACH(line ${slepcversion_file})
+ string(FIND "${line}" "#define SLEPC_VERSION_MAJOR " pos)
+ IF(NOT ${pos} EQUAL -1)
+ string(LENGTH ${line} line_length_major)#length of the line
+ MATH(EXPR slepc_version_major "${line_length_major}-1")#line ends with "x", that counts for 1 character
+ string(SUBSTRING ${line} ${slepc_version_major} 1 SLEPC_VERSION_MAJOR)
+ break()
+ ENDIF(NOT ${pos} EQUAL -1)
+ ENDFOREACH(line ${slepcversion_file})
+ FOREACH(line ${slepcversion_file})
+ string(FIND "${line}" "#define SLEPC_VERSION_MINOR " pos)
+ IF(NOT ${pos} EQUAL -1)
+ string(LENGTH ${line} line_length_minor)#length of the line
+ if(${line_length_minor} EQUAL ${line_length_major})
+ MATH(EXPR slepc_version_minor "${line_length_minor}-1")#line ends with "y", that counts for 1 character
+ string(SUBSTRING ${line} ${slepc_version_minor} 1 SLEPC_VERSION_MINOR)
+ break()
+ else(${line_length_minor} EQUAL ${line_length_major})
+ MATH(EXPR slepc_version_minor "${line_length_minor}-2")#line ends with "yy", that counts for two characters
+ string(SUBSTRING ${line} ${slepc_version_minor} 2 SLEPC_VERSION_MINOR)
+ endif(${line_length_minor} EQUAL ${line_length_major})
+ ENDIF(NOT ${pos} EQUAL -1)
+ ENDFOREACH(line ${slepcversion_file})
+ set(SLEPC_VERSION ${SLEPC_VERSION_MAJOR}.${SLEPC_VERSION_MINOR}) #3.8 for fedora 26 , 3.9 for fedora 29 , 3.10 for fedora 30 , 3.12 for fedora 32 , 3.14 for fedora 34 , 3.15 for fedora 35
+ message(STATUS "SLEPc detected, version is ${SLEPC_VERSION_MAJOR}.${SLEPC_VERSION_MINOR}" )
set (CPACK_RPM_PACKAGE_REQUIRES "${CPACK_RPM_PACKAGE_REQUIRES}, slepc-devel (>= 3.4)") # This is not fully working yet.
else ( IS_DIRECTORY "/usr/include/slepc/" AND EXISTS "/usr/lib64/libslepc.so" )
message( FATAL_ERROR "SLEPc not found in the system" )
message (STATUS "SLEPC will be downloaded and compiled from ${DOWNLOAD_SLEPC}" )
message (STATUS "HDF5 will be downloaded and compiled from ${DOWNLOAD_HDF5}" )
- #extract tarball name
+ #extract petsc tarball name
string(LENGTH "${DOWNLOAD_PETSC}" tarball_url_length)#length of the tarball
string(FIND "${DOWNLOAD_PETSC}" "/" start_tarball_name REVERSE )# last occurence of "/"
MATH(EXPR start_tarball_name "${start_tarball_name}+1")#start after the occurence of "/"
set(PETSC_DIR ${CMAKE_CURRENT_BINARY_DIR}/pre_requis/${PETSC_TARBALL_NAME}) # Location of the final install
set(PETSC_ARCH arch-linux-c-opt)
- set(PETSC_INSTALL ${CMAKE_INSTALL_PREFIX}/share/petsc)#folder to copy petsc libraries and include files
+ set(PETSC_INSTALL ${CMAKE_INSTALL_PREFIX}/lib/petsc)#folder to copy petsc libraries and include files
ExternalProject_Add (PETSc
URL ${DOWNLOAD_PETSC}
SOURCE_DIR ${PETSC_DIR}
BUILD_IN_SOURCE TRUE
- CONFIGURE_COMMAND <SOURCE_DIR>/configure --prefix=${PETSC_INSTALL} --with-debugging=0 --with-mpi=0 --download-f2cblaslapack=${DOWNLOAD_F2CBLASLAPACK} --with-fc=0 --download-slepc=${DOWNLOAD_SLEPC} --download-hdf5=${DOWNLOAD_HDF5}
+ CONFIGURE_COMMAND <SOURCE_DIR>/configure --prefix=${PETSC_INSTALL} --with-debugging=0 --download-f2cblaslapack=${DOWNLOAD_F2CBLASLAPACK} --with-mpi=0 --with-fc=0 --download-slepc=${DOWNLOAD_SLEPC} --download-hdf5=${DOWNLOAD_HDF5} --with-petsc4py=yes --download-slepc-configure-arguments="--with-slepc4py=yes" # --download-openmpi=${DOWNLOAD_OPENMPI} --download-hypre=${DOWNLOAD_HYPRE} --download-mpi4py=${DOWNLOAD_MPI4PY}
BUILD_COMMAND make all
TEST_COMMAND make check
INSTALL_COMMAND make install
set(PETSC_INCLUDES ${PETSC_DIR}/${PETSC_ARCH}/include ${PETSC_DIR}/include)
set(PETSC_LIBRARIES ${PETSC_DIR}/${PETSC_ARCH}/lib/libpetsc.so)
+ #extract slepc tarball name
+ string(LENGTH "${DOWNLOAD_SLEPC}" tarball_url_length)#length of the tarball
+ string(FIND "${DOWNLOAD_SLEPC}" "/" start_tarball_name REVERSE )# last occurence of "/"
+ MATH(EXPR start_tarball_name "${start_tarball_name}+1")#start after the occurence of "/"
+ MATH(EXPR tarball_name_length "${tarball_url_length}-${start_tarball_name}-7")#name ends before .tar.gz that counts for 7 characters
+ string(SUBSTRING ${DOWNLOAD_SLEPC} ${start_tarball_name} ${tarball_name_length} SLEPC_TARBALL_NAME)
+
+ #extract slepc version
+ string(LENGTH "${SLEPC_TARBALL_NAME}" tarball_name_length)#length of the tarball
+ string(FIND "${SLEPC_TARBALL_NAME}" "-" start_version_name REVERSE )# last occurence of "-"
+ MATH(EXPR start_version_name "${start_version_name}+1")#start after the occurence of "/"
+ string(SUBSTRING ${SLEPC_TARBALL_NAME} ${start_version_name} ${tarball_name_length} SLEPC_VERSION)
+ message( STATUS "SLEPc version ${SLEPC_VERSION} will be installed" )
+
#define slepc variables
set(SLEPC_DIR ${PETSC_INSTALL})
- set(SLEPC_INCLUDES ${SLEPC_DIR}/include ${PETSC_DIR}/${PETSC_ARCH}/externalpackages/slepc-3.13.4/include ${PETSC_DIR}/${PETSC_ARCH}/externalpackages/slepc-3.13.4/installed-arch-linux2-c-opt/include)
- set(SLEPC_LIBRARIES ${PETSC_DIR}/${PETSC_ARCH}/externalpackages/slepc-3.13.4/installed-arch-linux2-c-opt/lib/libslepc.so)
+ set(SLEPC_INCLUDES ${SLEPC_DIR}/include ${PETSC_DIR}/${PETSC_ARCH}/externalpackages/${SLEPC_TARBALL_NAME}/include )
+ set(SLEPC_LIBRARIES ${PETSC_DIR}/${PETSC_ARCH}/externalpackages/${SLEPC_TARBALL_NAME}/installed-arch-linux2-c-opt/lib/libslepc.so)
message( STATUS "SLEPc includes ${SLEPC_INCLUDES}")
#define hdf5 variables
set(HDF5_LIBRARY_DIR ${HDF5_ROOT}/lib)
set(HDF5_INCLUDE_DIRS ${HDF5_ROOT}/include)
+ #define MPI variables
+ #set(SOLVERLAB_WITH_MPI ON)
+ #set(MPI_HOME ${PETSC_INSTALL} )
+ #set(MPI_LIBRARY ${PETSC_INSTALL}/lib/libmpi.so)
+ #set(MPIEXEC ${PETSC_INSTALL}/bin/mpiexec)
+ #set(MPI4PY_ROOT_DIR ${PETSC_INSTALL}/lib/mpi4py )
+
endif ( IS_DIRECTORY "/usr/include/petsc/" AND EXISTS "/usr/lib64/libpetsc.so" )
endif ( DEFINED ENV{PETSC_DIR} OR PETSC_DIR )
- if ( ${PETSC_VERSION} VERSION_GREATER 3.5 )
- add_definitions(-DPETSC_VERSION_GREATER_3_5)
- endif( ${PETSC_VERSION} VERSION_GREATER 3.5 )
+if ( ${PETSC_VERSION} VERSION_GREATER 3.5 )
+ add_definitions(-DPETSC_VERSION_GREATER_3_5)
+endif( ${PETSC_VERSION} VERSION_GREATER 3.5 )
string(REPLACE ";" ":" PETSC_INCLUDES_INSTALL "${PETSC_INCLUDES}")# use colon instead of semicolon in environment file env_SOLVERLAB.sh
endif( NOT MEDFILE_ROOT_DIR )
find_package (MEDFile REQUIRED)
- message (STATUS "MEDFile found in ${MEDFILE_ROOT_DIR}")
else( MEDFILE_ROOT_DIR OR DEFINED ENV{MEDFILE_ROOT_DIR})
message(STATUS "MED will be downloaded and installed from ${DOWNLOAD_MED}")
set(MACHINE PCLINUX)
set(MEDFILE_DEFINITIONS "-D${MACHINE} -DMEDFILE_INSTALL_DOC=OFF")#Comment ne pas compiler la doc ?
- set(MEDFILE_ROOT_DIR ${CMAKE_INSTALL_PREFIX}/share/med) # Location of the final install
+ set(MEDFILE_ROOT_DIR ${CMAKE_INSTALL_PREFIX}/lib/med) # Location of the final install
#extraction of the tarball archive name
string(LENGTH "${DOWNLOAD_MED}" tarball_url_length)#length of the name of the tarball
URL ${DOWNLOAD_MED} #location of med tarball
SOURCE_DIR ${CMAKE_CURRENT_BINARY_DIR}/pre_requis/${MED_TARBALL_NAME}
BUILD_IN_SOURCE TRUE
- CONFIGURE_COMMAND <SOURCE_DIR>/configure --prefix=${MEDFILE_ROOT_DIR} --with-hdf5=${HDF5_ROOT} --with-hdf5-include=${HDF5_ROOT}/include --with-hdf5-lib=${HDF5_LIBRARY_DIR} --with-hdf5-bin=${HDF5_ROOT}/bin --with-swig=yes
+ CONFIGURE_COMMAND <SOURCE_DIR>/configure --prefix=${MEDFILE_ROOT_DIR} --with-hdf5=${HDF5_ROOT} --with-hdf5-include=${HDF5_ROOT}/include --with-hdf5-lib=${HDF5_LIBRARY_DIR} --with-hdf5-bin=${HDF5_ROOT}/bin --with-swig=yes --disable-fortran #CC=${PETSC_INSTALL}/bin/mpicc
BUILD_COMMAND make
INSTALL_COMMAND make install
INSTALL_DIR ${MEDFILE_ROOT_DIR}
######################################################
if( MEDCOUPLING_ROOT_DIR OR DEFINED ENV{MEDCOUPLING_ROOT_DIR})
- if( NOT MEDCOUPLING_ROOT_DIR )
+ if ( NOT MEDCOUPLING_ROOT_DIR )
set(MEDCOUPLING_ROOT_DIR $ENV{MEDCOUPLING_ROOT_DIR} )
endif( NOT MEDCOUPLING_ROOT_DIR )
message (STATUS "Seeking MEDCoupling library in ${MEDCOUPLING_ROOT_DIR}")
- if( NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedloader.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedcoupling.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/include/MEDCoupling.hxx)
- message (FATAL_ERROR "MEDCoupling library not found in ${MEDCOUPLING_ROOT_DIR}")
- else( NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedloader.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedcoupling.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/include/MEDCoupling.hxx)
- message (STATUS "MEDCoupling library found in ${MEDCOUPLING_ROOT_DIR}")
- endif( NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedloader.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedcoupling.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/include/MEDCoupling.hxx)
+ set(MEDCoupling_DIR ${MEDCOUPLING_ROOT_DIR}/cmake_files)
+ find_package(MEDCoupling CONFIG REQUIRED) # CONFIG is important !
+ message( STATUS "MEDCoupling found. Version is ${MEDCoupling_VERSION}")
else( MEDCOUPLING_ROOT_DIR OR DEFINED ENV{MEDCOUPLING_ROOT_DIR})
message(STATUS "MEDCoupling will be downloaded and installed from ${DOWNLOAD_MEDCOUPLING}")
- set(MEDCOUPLING_ROOT_DIR ${CMAKE_INSTALL_PREFIX}/share/medcoupling) # Location of the final install
+ set(MEDCOUPLING_ROOT_DIR ${CMAKE_INSTALL_PREFIX}/lib/medcoupling) # Location of the final install
SET(ENV{HDF5_ROOT} ${HDF5_ROOT})#MEDCoupling install process seems to require an environment variable
#extraction of the tarball archive name
MATH(EXPR start_tarball_name "${start_tarball_name}+1")#start after the occurence of "/"
MATH(EXPR tarball_name_length "${tarball_url_length}-${start_tarball_name}-7")#name ends before .tar.gz that counts for 7 characters
string(SUBSTRING ${DOWNLOAD_MEDCOUPLING} ${start_tarball_name} ${tarball_name_length} MEDCOUPLING_TARBALL_NAME)
- string(SUBSTRING ${MEDCOUPLING_TARBALL_NAME} 12 ${tarball_name_length} MEDCOUPLING_VERSION_NAME)
+ string(SUBSTRING ${MEDCOUPLING_TARBALL_NAME} 12 ${tarball_name_length} MEDCoupling_VERSION)
- message(STATUS "MEDCoupling version is ${MEDCOUPLING_VERSION_NAME}")
+ message(STATUS "MEDCoupling will be installed at ${MEDCOUPLING_ROOT_DIR}")
ExternalProject_Add (MEDCoupling
URL ${DOWNLOAD_MEDCOUPLING} #location of medcoupling tarball
SOURCE_DIR ${CMAKE_CURRENT_BINARY_DIR}/pre_requis/${MEDCOUPLING_TARBALL_NAME}
-# BUILD_IN_SOURCE FALSE
- CONFIGURE_COMMAND cmake <SOURCE_DIR>/${MEDCOUPLING_TARBALL_NAME} -DCMAKE_INSTALL_PREFIX=${MEDCOUPLING_ROOT_DIR} -DCONFIGURATION_ROOT_DIR=<SOURCE_DIR>/configuration-${MEDCOUPLING_VERSION_NAME} -DMEDFILE_ROOT_DIR=${MEDFILE_ROOT_DIR} -DMEDCOUPLING_ENABLE_PARTITIONER=OFF -DMEDCOUPLING_PARTITIONER_METIS=OFF -DMEDCOUPLING_PARTITIONER_SCOTCH=OFF -DMEDCOUPLING_ENABLE_RENUMBER=OFF -DMEDCOUPLING_BUILD_DOC=OFF -DHDF5_ROOT_DIR=${HDF5_ROOT}
+ BUILD_IN_SOURCE TRUE
+ CONFIGURE_COMMAND cmake <SOURCE_DIR>/${MEDCOUPLING_TARBALL_NAME} -DCMAKE_INSTALL_PREFIX=${MEDCOUPLING_ROOT_DIR} -DCONFIGURATION_ROOT_DIR=<SOURCE_DIR>/configuration-${MEDCoupling_VERSION} -DMEDFILE_ROOT_DIR=${MEDFILE_ROOT_DIR} -DMEDCOUPLING_ENABLE_PARTITIONER=OFF -DMEDCOUPLING_PARTITIONER_METIS=OFF -DMEDCOUPLING_PARTITIONER_SCOTCH=OFF -DMEDCOUPLING_ENABLE_RENUMBER=OFF -DMEDCOUPLING_BUILD_DOC=OFF -DHDF5_ROOT_DIR=${HDF5_ROOT} -DMEDCOUPLING_USE_64BIT_IDS=ON #-DSALOME_USE_MPI=ON
BUILD_COMMAND make
INSTALL_COMMAND make install
INSTALL_DIR ${MEDCOUPLING_ROOT_DIR}
LOG_INSTALL TRUE # Wrap install in script to log output
)
+ add_library(medloader SHARED IMPORTED )
+ set_property(TARGET medloader PROPERTY IMPORTED_LOCATION ${MEDCOUPLING_ROOT_DIR}/lib/libmedloader.so)
+
+ SET(MEDCOUPLING_USE_64BIT_IDS ON)
+
endif( MEDCOUPLING_ROOT_DIR OR DEFINED ENV{MEDCOUPLING_ROOT_DIR} )
set(MEDCOUPLING_INCLUDE_DIR ${MEDCOUPLING_ROOT_DIR}/include)
set(MEDCOUPLING_LIBRARIES ${MEDCOUPLING_ROOT_DIR}/lib )#for environment file env_SOLVERLAB.sh
-add_library(medloader SHARED IMPORTED )
-set_property(TARGET medloader PROPERTY IMPORTED_LOCATION ${MEDCOUPLING_ROOT_DIR}/lib/libmedloader.so)
add_library(medcoupling SHARED IMPORTED )
set_property(TARGET medcoupling PROPERTY IMPORTED_LOCATION ${MEDCOUPLING_ROOT_DIR}/lib/libmedcoupling.so)
+if ( ${MEDCoupling_VERSION} VERSION_GREATER 9.4 )
+ add_definitions(-DMEDCoupling_VERSION_VERSION_GREATER_9_4)
+endif( ${MEDCoupling_VERSION} VERSION_GREATER 9.4 )
+
if (TARGET MED AND TARGET PETSc)
ExternalProject_Add_StepDependencies( MED build PETSc )#PETSc doit être compilé avant MED car c'est PETSc qui compile HDF5
endif(TARGET MED AND TARGET PETSc)
if (TARGET PETSc AND TARGET MEDCoupling)
ExternalProject_Add_StepDependencies( MEDCoupling build PETSc )#PETSc doit être compilé avant MEDCoupling (car il contient hdf5)
endif(TARGET PETSc AND TARGET MEDCoupling)
+
+IF(MEDCOUPLING_USE_64BIT_IDS)
+ SET(CMAKE_SWIG_FLAGS ${CMAKE_SWIG_FLAGS} -DMEDCOUPLING_USE_64BIT_IDS)
+ENDIF(MEDCOUPLING_USE_64BIT_IDS)
####################
# Final operations #
####################
# Paraview variables to choose python version and for env_SOLVERLAB.sh
+if ( PARAVIEW_ROOT_DIR OR DEFINED ENV{PARAVIEW_ROOT_DIR})
+ if ( PARAVIEW_ROOT_DIR )
+ set( PARAVIEW_INCLUDE_DIR ${PARAVIEW_ROOT_DIR}/include)
+ set( PARAVIEW_LIBRARIES_DIR ${PARAVIEW_ROOT_DIR}/lib)
+ else( PARAVIEW_ROOT_DIR )
+ set( PARAVIEW_ROOT_DIR $ENV{PARAVIEW_ROOT_DIR} )
+ set( PARAVIEW_INCLUDE_DIR $ENV{PARAVIEW_ROOT_DIR}/include)
+ set( PARAVIEW_LIBRARIES_DIR $ENV{PARAVIEW_ROOT_DIR}/lib)
+ endif( PARAVIEW_ROOT_DIR )
+else( PARAVIEW_ROOT_DIR OR DEFINED ENV{PARAVIEW_ROOT_DIR})
+ message(STATUS "PARAVIEW_ROOT_DIR not set. Trying to detect paraview in the system.")
+ set( PARAVIEW_INCLUDE_DIR /usr/include/paraview/)
+ set( PARAVIEW_LIBRARIES_DIR /usr/lib/paraview/:/usr/lib64/paraview/:/usr/lib64/vtk/:/usr/lib/vtk/:/usr/lib/x86_64-linux-gnu)
+endif( PARAVIEW_ROOT_DIR OR DEFINED ENV{PARAVIEW_ROOT_DIR})
+
if ( DEFINED PARAVIEW_VERSION OR DEFINED ENV{PARAVIEW_VERSION} )
if ( NOT DEFINED PARAVIEW_VERSION )
set( PARAVIEW_VERSION $ENV{PARAVIEW_VERSION})
endif( NOT DEFINED PARAVIEW_VERSION )
message(STATUS "ParaView version is ${PARAVIEW_VERSION}" )
else( DEFINED PARAVIEW_VERSION OR DEFINED ENV{PARAVIEW_VERSION} )
- if ( DEFINED PARAVIEW_ROOT_DIR)
- set( PARAVIEW_INCLUDE_DIR ${PARAVIEW_ROOT_DIR}/include)
- set( PARAVIEW_LIBRARIES_DIR ${PARAVIEW_ROOT_DIR}/lib)
- else( DEFINED PARAVIEW_ROOT_DIR)
- message(STATUS "PARAVIEW_VERSION and PARAVIEW_ROOT_DIR not set. Trying to detect paraview.")
- set( PARAVIEW_INCLUDE_DIR /usr/include/paraview/)
- set( PARAVIEW_LIBRARIES_DIR /usr/lib/paraview/:/usr/lib64/paraview/:/usr/lib64/vtk/:/usr/lib/vtk/)
- endif( DEFINED PARAVIEW_ROOT_DIR)
-
set( PARAVIEW_SUFFIXES paraview-5.0 paraview-5.1 paraview-5.2 paraview-5.3 paraview-5.4 paraview-5.5 paraview-5.6 paraview-5.7 paraview-5.8 paraview-5.9 )
find_file( vtkConfig_file vtkPVConfig.h HINTS ${PARAVIEW_INCLUDE_DIR} PATH_SUFFIXES ${PARAVIEW_SUFFIXES})
#extraction of the paraview version"
IF ( ${vtkConfig_file} STREQUAL "vtkConfig_file-NOTFOUND" )
message(WARNING "Could not find ParaView configuration file vtkPVConfig.h in folder ${PARAVIEW_INCLUDE_DIR} and subdirectories ${PARAVIEW_SUFFIXES}. Postprocessing may not work")
- set( PARAVIEW_VERSION "5.0")
+ set( PARAVIEW_VERSION "5.8")
ELSE ( ${vtkConfig_file} STREQUAL "vtkConfig_file-NOTFOUND" )
message( STATUS "Found vtkPVConfig.h in ${vtkConfig_file}")
file(STRINGS ${vtkConfig_file} vtkConfig)
ENDIF( ${vtkConfig_file} STREQUAL "vtkConfig_file-NOTFOUND" )
endif( DEFINED PARAVIEW_VERSION OR DEFINED ENV{PARAVIEW_VERSION} )
-
+#Choose python 2 or 3
IF ( ${PARAVIEW_VERSION} STRGREATER "5.6" OR ${PARAVIEW_VERSION} STREQUAL "5.6" )#Use python 3, use VERSION_GREATER_EQUAL if cmake >=3.7
SET(PYTHON2OR3 "3")
message(STATUS "PARAVIEW_VERSION greater than 5.6. We need python3 for postprocessing scripts.")
ENDIF( ${PARAVIEW_VERSION} STRGREATER "5.6" OR ${PARAVIEW_VERSION} STREQUAL "5.6" )
# Find python
+IF ( PYTHON_ROOT_DIR OR DEFINED ENV{PYTHON_ROOT_DIR})
+ IF ( PYTHON_ROOT_DIR )
+ set(Python_ROOT_DIR ${PYTHON_ROOT_DIR} )
+ ELSE( PYTHON_ROOT_DIR )
+ set(Python_ROOT_DIR $ENV{PYTHON_ROOT_DIR} )
+ ENDIF( PYTHON_ROOT_DIR)
+ENDIF( PYTHON_ROOT_DIR OR DEFINED ENV{PYTHON_ROOT_DIR})
+
IF (${CMAKE_VERSION} VERSION_GREATER "3.12.0")
find_package(Python ${PYTHON2OR3} REQUIRED COMPONENTS Interpreter Development )
SET(PYTHON_EXECUTABLE ${Python_EXECUTABLE})
set(Python_VERSION_MINOR ${PYTHON_VERSION_MINOR})
ENDIF(${CMAKE_VERSION} VERSION_GREATER "3.12.0")
-# Bug MEDCoupling9.5.0 -> On ajoute les include de numpy
-set(Python_INCLUDE_DIRS ${Python_INCLUDE_DIRS} $ENV{PYTHON_ROOT_DIR}/lib/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages/numpy/core/include)
+message(STATUS "Python version found is ${Python_VERSION}")
-#Paraview library paths
-set (PV_LIB_DIR /usr/lib/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/dist-packages/paraview/:/usr/lib64/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages/vtk/:${PARAVIEW_LIBRARIES_DIR})
-set (PV_PYTHON_DIR /usr/lib/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/dist-packages/paraview/:/usr/lib64/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages/vtk/:/usr/lib64/paraview/site-packages/:/usr/lib64/paraview/site-packages/paraview/:/usr/lib64/paraview/site-packages/vtk/:/usr/lib64/paraview/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages/:/usr/lib64/paraview/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages/paraview/:/usr/lib64/paraview/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages/vtkmodules:/usr/lib/paraview/site-packages/paraview:/usr/lib/paraview/site-packages/paraview/vtk)
+#Matplotlib root dir
+IF ( NOT DEFINED MATPLOTLIB_ROOT_DIR )
+ set(MATPLOTLIB_ROOT_DIR $ENV{MATPLOTLIB_ROOT_DIR} )
+ENDIF( NOT DEFINED MATPLOTLIB_ROOT_DIR )
-message(STATUS "Python version found is ${Python_VERSION}")
+#PyQt5 root dir
+IF ( NOT DEFINED PYQT5_ROOT_DIR )
+ set(PYQT5_ROOT_DIR $ENV{PYQT5_ROOT_DIR} )
+ENDIF( NOT DEFINED PYQT5_ROOT_DIR )
+
+#Paraview library paths
+set (PV_LIB_DIR /usr/lib/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/dist-packages/paraview/:/usr/lib64/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages/vtk/:${MATPLOTLIB_ROOT_DIR}/lib/:${PARAVIEW_LIBRARIES_DIR})
+set (PV_PYTHON_DIR /usr/lib/python${Python_VERSION_MAJOR}/dist-packages/:/usr/lib/python${Python_VERSION_MAJOR}/dist-packages/paraview/:/usr/lib/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/dist-packages/paraview/:/usr/lib64/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages/vtk/:/usr/lib64/paraview/site-packages/:/usr/lib64/paraview/site-packages/paraview/:/usr/lib64/paraview/site-packages/vtk/:/usr/lib64/paraview/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages/:/usr/lib64/paraview/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages/paraview/:/usr/lib64/paraview/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages/vtkmodules:/usr/lib/paraview/site-packages/paraview:/usr/lib/paraview/site-packages/paraview/vtk:${PARAVIEW_ROOT_DIR}/lib/:${PARAVIEW_ROOT_DIR}/lib/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages/:${PARAVIEW_ROOT_DIR}/lib/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages/vtkmodules/:${MATPLOTLIB_ROOT_DIR}/lib/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages:${PYQT5_ROOT_DIR}:${PYQT5_ROOT_DIR}/lib/python${Python_VERSION_MAJOR}.${Python_VERSION_MINOR}/site-packages)
+
+# Detection of python-paraview
+string(REPLACE ":" ";" PV_PYTHON_DIR_PATHS "${PV_PYTHON_DIR}")# use semicolon instead of colon in PATH search
+find_file(python-paraview simple.py PATHS ${PV_PYTHON_DIR_PATHS})
+if( ${python-paraview} STREQUAL "python-paraview-NOTFOUND" )
+ message(WARNING "Python Paraview library not found. Post processing will fail in SOLVERLAB scripts.")
+ set(PRELOAD_NETCDF_ON_UBUNTU20 OFF)
+else( ${python-paraview} STREQUAL "python-paraview-NOTFOUND" )
+ if( ${python-paraview} STREQUAL "/usr/lib/python3/dist-packages/paraview/simple.py" )
+ message ( STATUS "Using system Paraview python libraries on Ubuntu 20.04 requires the presence and preload of library netcdf (bug in linkage)." )
+ if( EXISTS "/usr/lib/x86_64-linux-gnu/libnetcdf.so" )
+ message ( STATUS "Library netcdf found in the system. Paraview python libraries should be functional." )
+ set(PRELOAD_NETCDF_ON_UBUNTU20 ON)
+ else( EXISTS "/usr/lib/x86_64-linux-gnu/libnetcdf.so" )
+ message ( WARNING "Library netcdf not found in system. Paraview python libraries may not be functional (bug in linkage)." )
+ set(PRELOAD_NETCDF_ON_UBUNTU20 OFF)
+ endif( EXISTS "/usr/lib/x86_64-linux-gnu/libnetcdf.so" )
+ else( ${python-paraview} STREQUAL "/usr/lib/python3/dist-packages/paraview/simple.py" )
+ message(STATUS "Python Paraview library found. Post processing will work in SOLVERLAB scripts.")
+ set(PRELOAD_NETCDF_ON_UBUNTU20 OFF)
+ endif( ${python-paraview} STREQUAL "/usr/lib/python3/dist-packages/paraview/simple.py" )
+endif( ${python-paraview} STREQUAL "python-paraview-NOTFOUND" )
+
+# Find SWIG
+IF ( DEFINED SWIG_ROOT_DIR OR DEFINED ENV{SWIG_ROOT_DIR})
+ IF ( DEFINED SWIG_ROOT_DIR )
+ set(SWIG_EXECUTABLE ${SWIG_ROOT_DIR}/bin/swig )
+ ELSE ( DEFINED SWIG_ROOT_DIR )
+ set(SWIG_EXECUTABLE $ENV{SWIG_ROOT_DIR}/bin/swig )
+ ENDIF( DEFINED SWIG_ROOT_DIR)
+ENDIF( DEFINED SWIG_ROOT_DIR OR DEFINED ENV{SWIG_ROOT_DIR})
find_package (SWIG 3.0 REQUIRED)
+# Find Doxygen
if (SOLVERLAB_WITH_DOCUMENTATION) #
+ IF ( DEFINED DOXYGEN_ROOT_DIR OR DEFINED ENV{DOXYGEN_ROOT_DIR})
+ IF ( DEFINED DOXYGEN_ROOT_DIR )
+ set(DOXYGEN_EXECUTABLE ${DOXYGEN_ROOT_DIR}/bin/doxygen )
+ ELSE ( DEFINED DOXYGEN_ROOT_DIR )
+ set(DOXYGEN_EXECUTABLE $ENV{DOXYGEN_ROOT_DIR}/bin/doxygen )
+ ENDIF( DEFINED DOXYGEN_ROOT_DIR)
+ ENDIF( DEFINED DOXYGEN_ROOT_DIR OR DEFINED ENV{DOXYGEN_ROOT_DIR})
find_package (Doxygen) #
set (CPACK_DEBIAN_PACKAGE_DEPENDS "${CPACK_DEBIAN_PACKAGE_DEPENDS}, doxygen, graphviz, mscgen")
set (CPACK_RPM_PACKAGE_REQUIRES "${CPACK_RPM_PACKAGE_REQUIRES}, doxygen, graphviz, mscgen")
if (NOT DOXYGEN_FOUND)
message (FATAL_ERROR "Doxygen is needed to build the documentation. Please install it correctly.")
endif(NOT DOXYGEN_FOUND)
-endif()
+endif(SOLVERLAB_WITH_DOCUMENTATION)
+
if (SOLVERLAB_WITH_TESTS) #
enable_testing ()
+ IF ( DEFINED CPPUNIT_ROOT_DIR OR DEFINED ENV{CPPUNIT_ROOT_DIR})
+ IF ( DEFINED CPPUNIT_ROOT_DIR )
+ set(CPPUNIT_ROOT_USER ${CPPUNIT_ROOT_DIR} )
+ ELSE ( DEFINED CPPUNIT_ROOT_DIR )
+ set(CPPUNIT_ROOT_USER $ENV{CPPUNIT_ROOT_DIR} )
+ ENDIF( DEFINED CPPUNIT_ROOT_DIR)
+ ENDIF( DEFINED CPPUNIT_ROOT_DIR OR DEFINED ENV{CPPUNIT_ROOT_DIR})
find_package (CPPUNIT REQUIRED)
-endif()
-find_package (XDR REQUIRED)
+endif(SOLVERLAB_WITH_TESTS)
# Enter subdirectories
+set(CDMATH_WITH_POSTPRO ${SOLVERLAB_WITH_POSTPRO} )
+set(CDMATH_WITH_PETSC ${SOLVERLAB_WITH_PETSC} )
+set(CDMATH_WITH_DOCUMENTATION ${SOLVERLAB_WITH_DOCUMENTATION} )
+set(CDMATH_WITH_PYTHON ${SOLVERLAB_WITH_PYTHON} )
+set(CDMATH_WITH_PACKAGE ${SOLVERLAB_WITH_PACKAGE} )
+set(CDMATH_WITH_TESTS ${SOLVERLAB_WITH_TESTS} )
add_subdirectory (CDMATH)
if(SOLVERLAB_WITH_COREFLOWS)
+ set(COREFLOWS_WITH_DOCUMENTATION ${SOLVERLAB_WITH_DOCUMENTATION} )
+ set(COREFLOWS_WITH_PYTHON ${SOLVERLAB_WITH_PYTHON} )
+ set(COREFLOWS_WITH_GUI ${SOLVERLAB_WITH_GUI} )
+ set(COREFLOWS_WITH_PACKAGE ${SOLVERLAB_WITH_PACKAGE} )
+ set(COREFLOWS_WITH_TESTS ${SOLVERLAB_WITH_TESTS} )
add_subdirectory (CoreFlows)
endif(SOLVERLAB_WITH_COREFLOWS)
@ONLY
)
-
