# Project name
project (SOLVERLAB C CXX)
-set (SOLVERLAB_VERSION_MAJOR 0)
-set (SOLVERLAB_VERSION_MINOR 1)
+set (SOLVERLAB_VERSION_MAJOR 9)
+set (SOLVERLAB_VERSION_MINOR 7)
+set (SOLVERLAB_VERSION_SUBMINOR alpha)
option (SOLVERLAB_WITH_DOCUMENTATION "Generate SOLVERLAB documentation" ON)
option (SOLVERLAB_WITH_PYTHON "Compile Python interface of SOLVERLAB" ON)
set (MEDFILE_ROOT_DIR OFF CACHE STRING "MED library path" )
set (MEDCOUPLING_ROOT_DIR OFF CACHE STRING "MEDCoupling library path" )
set (PYTHON_ROOT_DIR OFF CACHE STRING "Python library path" )
+set (PARAVIEW_ROOT_DIR OFF CACHE STRING "PARAVIEW library path" )
#url of tarball librairies
-set (DOWNLOAD_PETSC http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-lite-3.14.0.tar.gz
+set (DOWNLOAD_PETSC http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-lite-3.14.2.tar.gz
CACHE STRING "PETSc tarball path/url" )
-set (DOWNLOAD_SLEPC https://slepc.upv.es/download/distrib/slepc-3.14.0.tar.gz
+set (DOWNLOAD_SLEPC https://slepc.upv.es/download/distrib/slepc-3.14.1.tar.gz
CACHE STRING "SLEPC tarball path/url" )
set (DOWNLOAD_F2CBLASLAPACK https://www.mcs.anl.gov/petsc/mirror/externalpackages/f2cblaslapack-3.4.2.q4.tar.gz
CACHE STRING "F2CBLASLAPACK tarball path/url" )
CACHE STRING "HDF5 tarball path/url" )
set (DOWNLOAD_MED http://files.salome-platform.org/Salome/other/med-4.1.0.tar.gz
CACHE STRING "MED tarball path/url")
-set (DOWNLOAD_MEDCOUPLING http://files.salome-platform.org/Salome/other/medCoupling-9.4.0.tar.gz
+set (DOWNLOAD_MEDCOUPLING http://files.salome-platform.org/Salome/other/medCoupling-9.6.0.tar.gz
CACHE STRING "MEDCoupling tarball path/url" )
+set (DOWNLOAD_OPENMPI https://download.open-mpi.org/release/open-mpi/v3.1/openmpi-3.1.6.tar.gz
+ CACHE STRING "OPENMPI tarball path/url" )
+set (DOWNLOAD_HYPRE https://github.com/hypre-space/hypre/archive/v2.20.0.zip
+ CACHE STRING "HYPRE tarball path/url" )
set (CMAKE_BUILD_TYPE Release CACHE STRING "Installation mode")
+include(ExternalProject)#For PETSc, MED and MEDCoupling
+
list (APPEND CMAKE_MODULE_PATH "${SOLVERLAB_SOURCE_DIR}/cmake_files")
-include(ExternalProject)#For PETSc, MED and MEDCoupling
+if( DEFINED ENV{MPI_HOME} OR DEFINED MPI_HOME )
+ set(SOLVERLAB_WITH_MPI ON)
+ find_package(MPI)
+ if( ${MPI_LIBRARY} STREQUAL "MPI_LIBRARY-NOTFOUND")
+ set ( MPI_LIBRARY ${MPI_HOME}/lib/libmpi.so )
+ endif(${MPI_LIBRARY} STREQUAL "MPI_LIBRARY-NOTFOUND")
+ message ( STATUS "MPI executable is ${MPIEXEC}" )
+else( DEFINED ENV{MPI_HOME} OR DEFINED MPI_HOME )
+ set(SOLVERLAB_WITH_MPI OFF)
+endif( DEFINED ENV{MPI_HOME} OR DEFINED MPI_HOME )
######################################################
# Detection or compilation of PETSc+SLEPc+HDF5 #
petsc_get_version ()
message ( STATUS "PETSc found. Version is ${PETSC_VERSION_MAJOR}.${PETSC_VERSION_MINOR}.${PETSC_VERSION_SUBMINOR}" )
+ message ( STATUS "PETSc compiler is ${PETSC_COMPILER}" )
+ message ( STATUS "PETSc executable is ${PETSC_MPIEXEC}")
+
set(PETSC_INSTALL ${PETSC_DIR})
#Define and search slepc variables
set(HDF5_ROOT ${PETSC_DIR}/${PETSC_ARCH})# define hint for hdf5/med installation in petsc external packages
endif( DEFINED ENV{HDF5_ROOT} )
endif( NOT HDF5_ROOT )
- set(HDF5_LIBRARY_DIR ${HDF5_ROOT}/lib)
- set(HDF5_INCLUDE_DIRS ${HDF5_ROOT}/include)
+
+ find_package(HDF5 COMPONENTS CXX HL)
+ if ( NOT HDF5_FOUND)
+ set(HDF5_LIBRARY_DIR ${HDF5_ROOT}/lib)
+ set(HDF5_INCLUDE_DIRS ${HDF5_ROOT}/include)
+ endif( NOT HDF5_FOUND)
+
else ( DEFINED ENV{PETSC_DIR} OR PETSC_DIR )
message ( STATUS "PETSC_DIR not set, searching PETSc and SLEPc in the system" )
message (STATUS "SLEPC will be downloaded and compiled from ${DOWNLOAD_SLEPC}" )
message (STATUS "HDF5 will be downloaded and compiled from ${DOWNLOAD_HDF5}" )
- #extract tarball name
+ #extract petsc tarball name
string(LENGTH "${DOWNLOAD_PETSC}" tarball_url_length)#length of the tarball
string(FIND "${DOWNLOAD_PETSC}" "/" start_tarball_name REVERSE )# last occurence of "/"
MATH(EXPR start_tarball_name "${start_tarball_name}+1")#start after the occurence of "/"
set(PETSC_DIR ${CMAKE_CURRENT_BINARY_DIR}/pre_requis/${PETSC_TARBALL_NAME}) # Location of the final install
set(PETSC_ARCH arch-linux-c-opt)
- set(PETSC_INSTALL ${CMAKE_INSTALL_PREFIX}/share/petsc)#folder to copy petsc libraries and include files
+ set(PETSC_INSTALL ${CMAKE_INSTALL_PREFIX}/lib/petsc)#folder to copy petsc libraries and include files
ExternalProject_Add (PETSc
URL ${DOWNLOAD_PETSC}
SOURCE_DIR ${PETSC_DIR}
BUILD_IN_SOURCE TRUE
- CONFIGURE_COMMAND <SOURCE_DIR>/configure --prefix=${PETSC_INSTALL} --with-debugging=0 --with-mpi=0 --download-f2cblaslapack=${DOWNLOAD_F2CBLASLAPACK} --with-fc=0 --download-slepc=${DOWNLOAD_SLEPC} --download-hdf5=${DOWNLOAD_HDF5}
+ CONFIGURE_COMMAND <SOURCE_DIR>/configure --prefix=${PETSC_INSTALL} --with-debugging=0 --download-f2cblaslapack=${DOWNLOAD_F2CBLASLAPACK} --with-fc=0 --download-slepc=${DOWNLOAD_SLEPC} --download-hdf5=${DOWNLOAD_HDF5} --with-mpi=0 # --download-openmpi=${DOWNLOAD_OPENMPI} --download-hypre=${DOWNLOAD_HYPRE}
BUILD_COMMAND make all
TEST_COMMAND make check
INSTALL_COMMAND make install
set(PETSC_INCLUDES ${PETSC_DIR}/${PETSC_ARCH}/include ${PETSC_DIR}/include)
set(PETSC_LIBRARIES ${PETSC_DIR}/${PETSC_ARCH}/lib/libpetsc.so)
+ #extract slepc tarball name
+ string(LENGTH "${DOWNLOAD_SLEPC}" tarball_url_length)#length of the tarball
+ string(FIND "${DOWNLOAD_SLEPC}" "/" start_tarball_name REVERSE )# last occurence of "/"
+ MATH(EXPR start_tarball_name "${start_tarball_name}+1")#start after the occurence of "/"
+ MATH(EXPR tarball_name_length "${tarball_url_length}-${start_tarball_name}-7")#name ends before .tar.gz that counts for 7 characters
+ string(SUBSTRING ${DOWNLOAD_SLEPC} ${start_tarball_name} ${tarball_name_length} SLEPC_TARBALL_NAME)
+
+ #extract slepc version
+ string(LENGTH "${SLEPC_TARBALL_NAME}" tarball_name_length)#length of the tarball
+ string(FIND "${SLEPC_TARBALL_NAME}" "-" start_version_name REVERSE )# last occurence of "-"
+ MATH(EXPR start_version_name "${start_version_name}+1")#start after the occurence of "/"
+ string(SUBSTRING ${SLEPC_TARBALL_NAME} ${start_version_name} ${tarball_name_length} SLEPC_VERSION)
+ message( STATUS "SLEPc version ${SLEPC_VERSION} will be installed" )
+
#define slepc variables
set(SLEPC_DIR ${PETSC_INSTALL})
- set(SLEPC_INCLUDES ${SLEPC_DIR}/include ${PETSC_DIR}/${PETSC_ARCH}/externalpackages/slepc-3.13.4/include ${PETSC_DIR}/${PETSC_ARCH}/externalpackages/slepc-3.13.4/installed-arch-linux2-c-opt/include)
- set(SLEPC_LIBRARIES ${PETSC_DIR}/${PETSC_ARCH}/externalpackages/slepc-3.13.4/installed-arch-linux2-c-opt/lib/libslepc.so)
+ set(SLEPC_INCLUDES ${SLEPC_DIR}/include ${PETSC_DIR}/${PETSC_ARCH}/externalpackages/${SLEPC_TARBALL_NAME}/include )
+ set(SLEPC_LIBRARIES ${PETSC_DIR}/${PETSC_ARCH}/externalpackages/${SLEPC_TARBALL_NAME}/installed-arch-linux2-c-opt/lib/libslepc.so)
message( STATUS "SLEPc includes ${SLEPC_INCLUDES}")
#define hdf5 variables
set(HDF5_LIBRARY_DIR ${HDF5_ROOT}/lib)
set(HDF5_INCLUDE_DIRS ${HDF5_ROOT}/include)
+ #define MPI variables
+ #set(SOLVERLAB_WITH_MPI ON)
+ #set(MPI_HOME ${PETSC_INSTALL} )
+ #set(MPI_LIBRARY ${PETSC_INSTALL}/lib/libmpi.so)
+ #set(MPIEXEC ${PETSC_INSTALL}/bin/mpiexec)
+
endif ( IS_DIRECTORY "/usr/include/petsc/" AND EXISTS "/usr/lib64/libpetsc.so" )
endif ( DEFINED ENV{PETSC_DIR} OR PETSC_DIR )
message(STATUS "MED will be downloaded and installed from ${DOWNLOAD_MED}")
set(MACHINE PCLINUX)
set(MEDFILE_DEFINITIONS "-D${MACHINE} -DMEDFILE_INSTALL_DOC=OFF")#Comment ne pas compiler la doc ?
- set(MEDFILE_ROOT_DIR ${CMAKE_INSTALL_PREFIX}/share/med) # Location of the final install
+ set(MEDFILE_ROOT_DIR ${CMAKE_INSTALL_PREFIX}/lib/med) # Location of the final install
#extraction of the tarball archive name
string(LENGTH "${DOWNLOAD_MED}" tarball_url_length)#length of the name of the tarball
URL ${DOWNLOAD_MED} #location of med tarball
SOURCE_DIR ${CMAKE_CURRENT_BINARY_DIR}/pre_requis/${MED_TARBALL_NAME}
BUILD_IN_SOURCE TRUE
- CONFIGURE_COMMAND <SOURCE_DIR>/configure --prefix=${MEDFILE_ROOT_DIR} --with-hdf5=${HDF5_ROOT} --with-hdf5-include=${HDF5_ROOT}/include --with-hdf5-lib=${HDF5_LIBRARY_DIR} --with-hdf5-bin=${HDF5_ROOT}/bin --with-swig=yes
+ CONFIGURE_COMMAND <SOURCE_DIR>/configure --prefix=${MEDFILE_ROOT_DIR} --with-hdf5=${HDF5_ROOT} --with-hdf5-include=${HDF5_ROOT}/include --with-hdf5-lib=${HDF5_LIBRARY_DIR} --with-hdf5-bin=${HDF5_ROOT}/bin --with-swig=yes --disable-fortran #CC=${PETSC_INSTALL}/bin/mpicc
BUILD_COMMAND make
INSTALL_COMMAND make install
INSTALL_DIR ${MEDFILE_ROOT_DIR}
######################################################
if( MEDCOUPLING_ROOT_DIR OR DEFINED ENV{MEDCOUPLING_ROOT_DIR})
- if( NOT MEDCOUPLING_ROOT_DIR )
+ if ( NOT MEDCOUPLING_ROOT_DIR )
set(MEDCOUPLING_ROOT_DIR $ENV{MEDCOUPLING_ROOT_DIR} )
endif( NOT MEDCOUPLING_ROOT_DIR )
message (STATUS "Seeking MEDCoupling library in ${MEDCOUPLING_ROOT_DIR}")
- if( NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedloader.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedcoupling.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/include/MEDCoupling.hxx)
- message (FATAL_ERROR "MEDCoupling library not found in ${MEDCOUPLING_ROOT_DIR}")
- else( NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedloader.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedcoupling.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/include/MEDCoupling.hxx)
- message (STATUS "MEDCoupling library found in ${MEDCOUPLING_ROOT_DIR}")
- endif( NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedloader.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/lib/libmedcoupling.so OR NOT EXISTS ${MEDCOUPLING_ROOT_DIR}/include/MEDCoupling.hxx)
-
- add_library(medloader SHARED IMPORTED )
- set_property(TARGET medloader PROPERTY IMPORTED_LOCATION ${MEDCOUPLING_ROOT_DIR}/lib/libmedloader.so)
- add_library(interpkernel SHARED IMPORTED )
- set_property(TARGET interpkernel PROPERTY IMPORTED_LOCATION ${MEDCOUPLING_ROOT_DIR}/lib/libinterpkernel.so)
- add_library(medcouplingremapper SHARED IMPORTED )
- set_property(TARGET medcouplingremapper PROPERTY IMPORTED_LOCATION ${MEDCOUPLING_ROOT_DIR}/lib/libmedcouplingremapper.so)
- add_library(medcouplingcpp SHARED IMPORTED )
- set_property(TARGET medcouplingcpp PROPERTY IMPORTED_LOCATION ${MEDCOUPLING_ROOT_DIR}/lib/libmedcouplingcpp.so)
-
set(MEDCoupling_DIR ${MEDCOUPLING_ROOT_DIR}/cmake_files)
find_package(MEDCoupling CONFIG REQUIRED) # CONFIG is important !
message( STATUS "MEDCoupling found. Version is ${MEDCoupling_VERSION}")
-else( MEDCOUPLING_ROOT_DIR OR DEFINED ENV{MEDCOUPLING_ROOT_DIR})
+else( DEFINED MEDCOUPLING_ROOT_DIR OR DEFINED ENV{MEDCOUPLING_ROOT_DIR})
message(STATUS "MEDCoupling will be downloaded and installed from ${DOWNLOAD_MEDCOUPLING}")
- set(MEDCOUPLING_ROOT_DIR ${CMAKE_INSTALL_PREFIX}/share/medcoupling) # Location of the final install
+ set(MEDCOUPLING_ROOT_DIR ${CMAKE_INSTALL_PREFIX}/lib/medcoupling) # Location of the final install
SET(ENV{HDF5_ROOT} ${HDF5_ROOT})#MEDCoupling install process seems to require an environment variable
#extraction of the tarball archive name
string(SUBSTRING ${DOWNLOAD_MEDCOUPLING} ${start_tarball_name} ${tarball_name_length} MEDCOUPLING_TARBALL_NAME)
string(SUBSTRING ${MEDCOUPLING_TARBALL_NAME} 12 ${tarball_name_length} MEDCoupling_VERSION)
- message(STATUS "MEDCoupling version will be ${MEDCoupling_VERSION}")
+ message(STATUS "MEDCoupling will be installed at ${MEDCOUPLING_ROOT_DIR}")
ExternalProject_Add (MEDCoupling
URL ${DOWNLOAD_MEDCOUPLING} #location of medcoupling tarball
SOURCE_DIR ${CMAKE_CURRENT_BINARY_DIR}/pre_requis/${MEDCOUPLING_TARBALL_NAME}
-# BUILD_IN_SOURCE FALSE
- CONFIGURE_COMMAND cmake <SOURCE_DIR>/${MEDCOUPLING_TARBALL_NAME} -DCMAKE_INSTALL_PREFIX=${MEDCOUPLING_ROOT_DIR} -DCONFIGURATION_ROOT_DIR=<SOURCE_DIR>/configuration-${MEDCoupling_VERSION} -DMEDFILE_ROOT_DIR=${MEDFILE_ROOT_DIR} -DMEDCOUPLING_ENABLE_PARTITIONER=OFF -DMEDCOUPLING_PARTITIONER_METIS=OFF -DMEDCOUPLING_PARTITIONER_SCOTCH=OFF -DMEDCOUPLING_ENABLE_RENUMBER=OFF -DMEDCOUPLING_BUILD_DOC=OFF -DHDF5_ROOT_DIR=${HDF5_ROOT}
+ BUILD_IN_SOURCE TRUE
+ CONFIGURE_COMMAND cmake <SOURCE_DIR>/${MEDCOUPLING_TARBALL_NAME} -DCMAKE_INSTALL_PREFIX=${MEDCOUPLING_ROOT_DIR} -DCONFIGURATION_ROOT_DIR=<SOURCE_DIR>/configuration-${MEDCoupling_VERSION} -DMEDFILE_ROOT_DIR=${MEDFILE_ROOT_DIR} -DMEDCOUPLING_ENABLE_PARTITIONER=OFF -DMEDCOUPLING_PARTITIONER_METIS=OFF -DMEDCOUPLING_PARTITIONER_SCOTCH=OFF -DMEDCOUPLING_ENABLE_RENUMBER=OFF -DMEDCOUPLING_BUILD_DOC=OFF -DHDF5_ROOT_DIR=${HDF5_ROOT} -DMEDCOUPLING_USE_64BIT_IDS=ON #-DSALOME_USE_MPI=ON
BUILD_COMMAND make
INSTALL_COMMAND make install
INSTALL_DIR ${MEDCOUPLING_ROOT_DIR}
add_library(medloader SHARED IMPORTED )
set_property(TARGET medloader PROPERTY IMPORTED_LOCATION ${MEDCOUPLING_ROOT_DIR}/lib/libmedloader.so)
+ SET(MEDCOUPLING_USE_64BIT_IDS ON)
+
endif( MEDCOUPLING_ROOT_DIR OR DEFINED ENV{MEDCOUPLING_ROOT_DIR} )
set(MEDCOUPLING_INCLUDE_DIR ${MEDCOUPLING_ROOT_DIR}/include)
####################
# Paraview variables to choose python version and for env_SOLVERLAB.sh
-if ( DEFINED PARAVIEW_ROOT_DIR OR DEFINED ENV{PARAVIEW_ROOT_DIR})
- if ( DEFINED PARAVIEW_ROOT_DIR )
+if ( PARAVIEW_ROOT_DIR OR DEFINED ENV{PARAVIEW_ROOT_DIR})
+ if ( PARAVIEW_ROOT_DIR )
set( PARAVIEW_INCLUDE_DIR ${PARAVIEW_ROOT_DIR}/include)
set( PARAVIEW_LIBRARIES_DIR ${PARAVIEW_ROOT_DIR}/lib)
- else( DEFINED PARAVIEW_ROOT_DIR )
+ else( PARAVIEW_ROOT_DIR )
set( PARAVIEW_ROOT_DIR $ENV{PARAVIEW_ROOT_DIR} )
set( PARAVIEW_INCLUDE_DIR $ENV{PARAVIEW_ROOT_DIR}/include)
set( PARAVIEW_LIBRARIES_DIR $ENV{PARAVIEW_ROOT_DIR}/lib)
- endif( DEFINED PARAVIEW_ROOT_DIR )
-else( DEFINED PARAVIEW_ROOT_DIR OR DEFINED ENV{PARAVIEW_ROOT_DIR})
+ endif( PARAVIEW_ROOT_DIR )
+else( PARAVIEW_ROOT_DIR OR DEFINED ENV{PARAVIEW_ROOT_DIR})
message(STATUS "PARAVIEW_ROOT_DIR not set. Trying to detect paraview.")
set( PARAVIEW_INCLUDE_DIR /usr/include/paraview/)
set( PARAVIEW_LIBRARIES_DIR /usr/lib/paraview/:/usr/lib64/paraview/:/usr/lib64/vtk/:/usr/lib/vtk/)
-endif( DEFINED PARAVIEW_ROOT_DIR OR DEFINED ENV{PARAVIEW_ROOT_DIR})
+endif( PARAVIEW_ROOT_DIR OR DEFINED ENV{PARAVIEW_ROOT_DIR})
if ( DEFINED PARAVIEW_VERSION OR DEFINED ENV{PARAVIEW_VERSION} )
if ( NOT DEFINED PARAVIEW_VERSION )
#extraction of the paraview version"
IF ( ${vtkConfig_file} STREQUAL "vtkConfig_file-NOTFOUND" )
message(WARNING "Could not find ParaView configuration file vtkPVConfig.h in folder ${PARAVIEW_INCLUDE_DIR} and subdirectories ${PARAVIEW_SUFFIXES}. Postprocessing may not work")
- set( PARAVIEW_VERSION "5.0")
+ set( PARAVIEW_VERSION "5.8")
ELSE ( ${vtkConfig_file} STREQUAL "vtkConfig_file-NOTFOUND" )
message( STATUS "Found vtkPVConfig.h in ${vtkConfig_file}")
file(STRINGS ${vtkConfig_file} vtkConfig)
enable_testing ()
find_package (CPPUNIT REQUIRED)
endif()
-find_package (XDR REQUIRED)
# Enter subdirectories
add_subdirectory (CDMATH)
