1 // Copyright (C) 2007-2016 CEA/DEN, EDF R&D
3 // This library is free software; you can redistribute it and/or
4 // modify it under the terms of the GNU Lesser General Public
5 // License as published by the Free Software Foundation; either
6 // version 2.1 of the License, or (at your option) any later version.
8 // This library is distributed in the hope that it will be useful,
9 // but WITHOUT ANY WARRANTY; without even the implied warranty of
10 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
11 // Lesser General Public License for more details.
13 // You should have received a copy of the GNU Lesser General Public
14 // License along with this library; if not, write to the Free Software
15 // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
17 // See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
19 // Author : Anthony Geay (CEA/DEN)
21 #include "MEDFileMeshLL.hxx"
22 #include "MEDFileMesh.hxx"
23 #include "MEDLoaderBase.hxx"
24 #include "MEDFileSafeCaller.txx"
25 #include "MEDFileMeshReadSelector.hxx"
27 #include "MEDCouplingUMesh.hxx"
29 #include "InterpKernelAutoPtr.hxx"
30 #include "CellModel.hxx"
35 extern med_geometry_type typmai[MED_N_CELL_FIXED_GEO];
36 extern INTERP_KERNEL::NormalizedCellType typmai2[MED_N_CELL_FIXED_GEO];
37 extern med_geometry_type typmainoeud[1];
39 using namespace MEDCoupling;
41 const char MEDFileMeshL2::ZE_SEP_FOR_FAMILY_KILLERS[]="!/__\\!";//important start by - because ord('!')==33 the smallest (!=' ') to preserve orders at most.
43 int MEDFileMeshL2::ZE_SEP2_FOR_FAMILY_KILLERS=4;
45 std::vector<std::string> MeshCls::getAxisInfoOnMesh(med_idt fid, const std::string& mName, MEDCoupling::MEDCouplingMeshType& meshType, MEDCoupling::MEDCouplingAxisType& axType, int& nstep, int& Mdim, MEDFileString& description, MEDFileString& dtunit, MEDFileString& univName) const
47 med_mesh_type type_maillage;
49 med_sorting_type stype;
50 med_axis_type axistype;
51 int naxis(MEDmeshnAxis(fid,getID()));
52 INTERP_KERNEL::AutoPtr<char> nameTmp(MEDLoaderBase::buildEmptyString(MED_NAME_SIZE));
53 INTERP_KERNEL::AutoPtr<char> axisname(MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE));
54 INTERP_KERNEL::AutoPtr<char> axisunit(MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE));
55 INTERP_KERNEL::AutoPtr<char> univTmp(MEDLoaderBase::buildEmptyString(MED_LNAME_SIZE));
56 if(MEDmeshInfo(fid,getID(),nameTmp,&spaceDim,&Mdim,&type_maillage,description.getPointer(),dtunit.getPointer(),
57 &stype,&nstep,&axistype,axisname,axisunit)!=0)
58 throw INTERP_KERNEL::Exception("A problem has been detected when trying to get info on mesh !");
59 MEDmeshUniversalNameRd(fid,nameTmp,univName.getPointer());// do not protect MEDFILESAFECALLERRD0 call : Thanks to fra.med.
60 axType=MEDFileMeshL2::TraduceAxisType(axistype);
63 case MED_UNSTRUCTURED_MESH:
64 meshType=UNSTRUCTURED;
66 case MED_STRUCTURED_MESH:
69 MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mName.c_str(),>));
72 case MED_CARTESIAN_GRID:
75 case MED_CURVILINEAR_GRID:
76 meshType=CURVE_LINEAR;
78 case MED_POLAR_GRID:// this is not a bug. A MED file POLAR_GRID is deal by CARTESIAN MEDLoader
82 throw INTERP_KERNEL::Exception("MEDFileMeshL2::getAxisInfoOnMesh : unrecognized structured mesh type ! Supported are :\n - cartesian\n - curve linear\n");
87 throw INTERP_KERNEL::Exception("MEDFileMeshL2::getMeshIdFromName : unrecognized mesh type !");
90 std::vector<std::string> infosOnComp(naxis);
91 for(int i=0;i<naxis;i++)
93 std::string info(MEDLoaderBase::buildUnionUnit(((char *)axisname)+i*MED_SNAME_SIZE,MED_SNAME_SIZE,((char *)axisunit)+i*MED_SNAME_SIZE,MED_SNAME_SIZE));
99 double MeshCls::checkMeshTimeStep(med_idt fid, const std::string& mName, int nstep, int dt, int it) const
104 std::vector< std::pair<int,int> > p(nstep);
105 for(int i=0;i<nstep;i++)
107 MEDFILESAFECALLERRD0(MEDmeshComputationStepInfo,(fid,mName.c_str(),i+1,&numdt,&numit,&dtt));
108 p[i]=std::make_pair((int)numdt,(int)numit);
109 found=(numdt==dt) && (numit==it);
114 std::ostringstream oss; oss << "No such iteration=" << dt << ",order=" << it << " numbers found for mesh '" << mName << "' ! ";
115 oss << "Possibilities are : ";
116 for(int i=0;i<nstep;i++)
117 oss << "(" << p[i].first << "," << p[i].second << "), ";
118 throw INTERP_KERNEL::Exception(oss.str().c_str());
123 std::vector<std::string> StructMeshCls::getAxisInfoOnMesh(med_idt fid, const std::string& mName, MEDCoupling::MEDCouplingMeshType& meshType, MEDCoupling::MEDCouplingAxisType& axType, int& nstep, int& Mdim, MEDFileString& description, MEDFileString& dtunit, MEDFileString& univName) const
125 INTERP_KERNEL::AutoPtr<char> msn(MEDLoaderBase::buildEmptyString(MED_NAME_SIZE));
126 INTERP_KERNEL::AutoPtr<char> zeDescription(MEDLoaderBase::buildEmptyString(MED_COMMENT_SIZE));
127 med_axis_type medAxType;
128 int nAxis(MEDsupportMeshnAxis(fid,getID()));
129 INTERP_KERNEL::AutoPtr<char> axisName(new char[MED_SNAME_SIZE*nAxis+1]),axisUnit(new char[MED_SNAME_SIZE*nAxis+1]);
130 int spaceDim(0),meshDim(0);
131 MEDFILESAFECALLERRD0(MEDsupportMeshInfo,(fid,getID(),msn,&spaceDim,&meshDim,zeDescription,&medAxType,axisName,axisUnit));
132 std::string descriptionCpp(MEDLoaderBase::buildStringFromFortran(zeDescription,MED_COMMENT_SIZE));
133 description.set(descriptionCpp.c_str());
134 dtunit.clear(); univName.clear(); meshType=UNSTRUCTURED; nstep=1;
135 axType=MEDFileMeshL2::TraduceAxisType(medAxType);
137 //med_bool chgt=MED_FALSE,trsf=MED_FALSE;
138 //nmodels=MEDmeshnEntity(fid,_name.c_str(),MED_NO_DT,MED_NO_IT,MED_STRUCT_ELEMENT,MED_GEO_ALL,MED_CONNECTIVITY,MED_NODAL,&chgt,&trsf);
139 std::vector<std::string> ret;
140 for(int i=0;i<nAxis;i++)
142 std::string info(DataArray::BuildInfoFromVarAndUnit(MEDLoaderBase::buildStringFromFortran(axisName+i*MED_SNAME_SIZE,MED_SNAME_SIZE),
143 MEDLoaderBase::buildStringFromFortran(axisUnit+i*MED_SNAME_SIZE,MED_SNAME_SIZE)));
149 double StructMeshCls::checkMeshTimeStep(med_idt fid, const std::string& mName, int nstep, int dt, int it) const
154 MEDFileMeshL2::MEDFileMeshL2():_name(MED_NAME_SIZE),_description(MED_COMMENT_SIZE),_univ_name(MED_LNAME_SIZE),_dt_unit(MED_LNAME_SIZE)
158 std::size_t MEDFileMeshL2::getHeapMemorySizeWithoutChildren() const
163 std::vector<const BigMemoryObject *> MEDFileMeshL2::getDirectChildrenWithNull() const
165 return std::vector<const BigMemoryObject *>();
168 INTERP_KERNEL::AutoCppPtr<MeshOrStructMeshCls> MEDFileMeshL2::GetMeshIdFromName(med_idt fid, const std::string& mName, MEDCoupling::MEDCouplingMeshType& meshType, MEDCoupling::MEDCouplingAxisType& axType, int& dt, int& it, std::string& dtunit1)
170 med_mesh_type type_maillage;
171 char maillage_description[MED_COMMENT_SIZE+1];
172 char dtunit[MED_LNAME_SIZE+1];
173 med_int spaceDim,dim;
174 char nommaa[MED_NAME_SIZE+1];
175 med_int n=MEDnMesh(fid);
178 med_sorting_type stype;
179 std::vector<std::string> ms;
181 med_axis_type axistype;
182 for(int i=0;i<n && found==0;i++)
184 int naxis(MEDmeshnAxis(fid,i+1));
185 INTERP_KERNEL::AutoPtr<char> axisname(MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE)),axisunit(MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE));
186 MEDFILESAFECALLERRD0(MEDmeshInfo,(fid,i+1,nommaa,&spaceDim,&dim,&type_maillage,maillage_description,dtunit,&stype,&nstep,&axistype,axisname,axisunit));
187 dtunit1=MEDLoaderBase::buildStringFromFortran(dtunit,sizeof(dtunit));
188 std::string cur(MEDLoaderBase::buildStringFromFortran(nommaa,sizeof(nommaa)));
197 {//last chance ! Is it a support mesh ?
198 int nbSM(MEDnSupportMesh(fid));
199 for(int i=0;i<nbSM && found==0;i++)
201 int naxis(MEDsupportMeshnAxis(fid,i+1));
202 INTERP_KERNEL::AutoPtr<char> axisname(MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE)),axisunit(MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE));
203 MEDFILESAFECALLERRD0(MEDsupportMeshInfo,(fid,i+1,nommaa,&spaceDim,&dim,maillage_description,&axistype,axisname,axisunit));
204 std::string cur(MEDLoaderBase::buildStringFromFortran(nommaa,sizeof(nommaa)));
213 ////////////////////////
218 axType=TraduceAxisType(axistype);
219 switch(type_maillage)
221 case MED_UNSTRUCTURED_MESH:
222 meshType=UNSTRUCTURED;
224 case MED_STRUCTURED_MESH:
227 MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mName.c_str(),>));
230 case MED_CARTESIAN_GRID:
233 case MED_CURVILINEAR_GRID:
234 meshType=CURVE_LINEAR;
236 case MED_POLAR_GRID:// this is not a bug. A MED file POLAR_GRID is deal by CARTESIAN MEDLoader
240 throw INTERP_KERNEL::Exception("MEDFileMeshL2::getMeshIdFromName : unrecognized structured mesh type ! Supported are :\n - cartesian\n - curve linear\n");
245 throw INTERP_KERNEL::Exception("MEDFileMeshL2::getMeshIdFromName : unrecognized mesh type !");
249 MEDFILESAFECALLERRD0(MEDmeshComputationStepInfo,(fid,mName.c_str(),1,&numdt,&numit,&dtt));
251 return new MeshCls(ret);
255 meshType=UNSTRUCTURED;
256 dt=MED_NO_DT; it=MED_NO_IT; dtunit1.clear();
257 axType=axType=TraduceAxisType(axistype);
258 return new StructMeshCls(ret);
262 std::ostringstream oss;
263 oss << "No such meshname (" << mName << ") in file ! Must be in : ";
264 std::copy(ms.begin(),ms.end(),std::ostream_iterator<std::string>(oss,", "));
265 throw INTERP_KERNEL::Exception(oss.str().c_str());
272 * non static and non const method because _description, _dt_unit... are set in this method.
274 std::vector<std::string> MEDFileMeshL2::getAxisInfoOnMesh(med_idt fid, const MeshOrStructMeshCls *mId, const std::string& mName, MEDCoupling::MEDCouplingMeshType& meshType, MEDCoupling::MEDCouplingAxisType& axType, int& nstep, int& Mdim)
276 return mId->getAxisInfoOnMesh(fid,mName,meshType,axType,nstep,Mdim,_description,_dt_unit,_univ_name);
279 void MEDFileMeshL2::ReadFamiliesAndGrps(med_idt fid, const std::string& meshName, std::map<std::string,int>& fams, std::map<std::string, std::vector<std::string> >& grps, MEDFileMeshReadSelector *mrs)
281 if(mrs && !(mrs->isCellFamilyFieldReading() || mrs->isNodeFamilyFieldReading()))
283 char nomfam[MED_NAME_SIZE+1];
285 int nfam=MEDnFamily(fid,meshName.c_str());
286 std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > > crudeFams(nfam);
287 for(int i=0;i<nfam;i++)
289 int ngro=MEDnFamilyGroup(fid,meshName.c_str(),i+1);
290 med_int natt=MEDnFamily23Attribute(fid,meshName.c_str(),i+1);
291 INTERP_KERNEL::AutoPtr<med_int> attide=new med_int[natt];
292 INTERP_KERNEL::AutoPtr<med_int> attval=new med_int[natt];
293 INTERP_KERNEL::AutoPtr<char> attdes=new char[MED_COMMENT_SIZE*natt+1];
294 INTERP_KERNEL::AutoPtr<char> gro=new char[MED_LNAME_SIZE*ngro+1];
295 MEDfamily23Info(fid,meshName.c_str(),i+1,nomfam,attide,attval,attdes,&numfam,gro);
296 std::string famName(MEDLoaderBase::buildStringFromFortran(nomfam,MED_NAME_SIZE));
297 std::vector<std::string> grps(ngro);
298 for(int j=0;j<ngro;j++)
299 grps[j]=MEDLoaderBase::buildStringFromFortran(gro+j*MED_LNAME_SIZE,MED_LNAME_SIZE);
300 crudeFams[i]=std::pair<std::string,std::pair<int,std::vector<std::string> > >(famName,std::pair<int,std::vector<std::string> >(numfam,grps));
302 RenameFamiliesFromFileToMemInternal(crudeFams);
303 for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::const_iterator it0=crudeFams.begin();it0!=crudeFams.end();it0++)
305 fams[(*it0).first]=(*it0).second.first;
306 for(std::vector<std::string>::const_iterator it1=(*it0).second.second.begin();it1!=(*it0).second.second.end();it1++)
307 grps[*it1].push_back((*it0).first);
311 void MEDFileMeshL2::WriteFamiliesAndGrps(med_idt fid, const std::string& mname, const std::map<std::string,int>& fams, const std::map<std::string, std::vector<std::string> >& grps, int tooLongStrPol)
313 std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > > crudeFams(fams.size());
315 for(std::map<std::string,int>::const_iterator it=fams.begin();it!=fams.end();it++,ii++)
317 std::vector<std::string> grpsOfFam;
318 for(std::map<std::string, std::vector<std::string> >::const_iterator it1=grps.begin();it1!=grps.end();it1++)
320 if(std::find((*it1).second.begin(),(*it1).second.end(),(*it).first)!=(*it1).second.end())
321 grpsOfFam.push_back((*it1).first);
323 crudeFams[ii]=std::pair<std::string,std::pair<int,std::vector<std::string> > >((*it).first,std::pair<int,std::vector<std::string> >((*it).second,grpsOfFam));
325 RenameFamiliesFromMemToFileInternal(crudeFams);
326 for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::const_iterator it=crudeFams.begin();it!=crudeFams.end();it++)
328 int ngro((*it).second.second.size());
329 INTERP_KERNEL::AutoPtr<char> groName=MEDLoaderBase::buildEmptyString(MED_LNAME_SIZE*ngro);
331 for(std::vector<std::string>::const_iterator it2=(*it).second.second.begin();it2!=(*it).second.second.end();it2++,i++)
332 MEDLoaderBase::safeStrCpy2((*it2).c_str(),MED_LNAME_SIZE-1,groName+i*MED_LNAME_SIZE,tooLongStrPol);
333 INTERP_KERNEL::AutoPtr<char> famName=MEDLoaderBase::buildEmptyString(MED_NAME_SIZE);
334 MEDLoaderBase::safeStrCpy((*it).first.c_str(),MED_NAME_SIZE,famName,tooLongStrPol);
335 int ret=MEDfamilyCr(fid,mname.c_str(),famName,(*it).second.first,ngro,groName);
340 void MEDFileMeshL2::RenameFamiliesPatternInternal(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >& crudeFams, RenameFamiliesPatternFunc func)
343 std::vector<std::string> fams(crudeFams.size());
344 for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::const_iterator it=crudeFams.begin();it!=crudeFams.end();it++,ii++)
345 fams[ii]=(*it).first;
349 for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::iterator it=crudeFams.begin();it!=crudeFams.end();it++,ii++)
350 (*it).first=fams[ii];
354 * This method is dedicated to the killers that use a same family name to store different family ids. MED file API authorizes it.
355 * So this method renames families (if needed generaly not !) in order to have a discriminant name for families.
357 void MEDFileMeshL2::RenameFamiliesFromFileToMemInternal(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >& crudeFams)
359 RenameFamiliesPatternInternal(crudeFams,RenameFamiliesFromFileToMem);
362 bool MEDFileMeshL2::RenameFamiliesFromFileToMem(std::vector< std::string >& famNames)
364 std::map<std::string,int> m;
365 std::set<std::string> s;
366 for(std::vector< std::string >::const_iterator it=famNames.begin();it!=famNames.end();it++)
368 if(s.find(*it)!=s.end())
373 return false;// the general case !
374 for(std::vector< std::string >::iterator it=famNames.begin();it!=famNames.end();it++)
376 std::map<std::string,int>::iterator it2(m.find(*it));
379 std::ostringstream oss; oss << *it << ZE_SEP_FOR_FAMILY_KILLERS << std::setfill('0') << std::setw(ZE_SEP2_FOR_FAMILY_KILLERS) << (*it2).second++;
387 * This method is dedicated to the killers that use a same family name to store different family ids. MED file API authorizes it.
388 * So this method renames families (if needed generaly not !) in order to have a discriminant name for families.
390 void MEDFileMeshL2::RenameFamiliesFromMemToFileInternal(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >& crudeFams)
392 RenameFamiliesPatternInternal(crudeFams,RenameFamiliesFromMemToFile);
395 bool MEDFileMeshL2::RenameFamiliesFromMemToFile(std::vector< std::string >& famNames)
397 bool isSmthingStrange(false);
398 for(std::vector< std::string >::const_iterator it=famNames.begin();it!=famNames.end();it++)
400 std::size_t found((*it).find(ZE_SEP_FOR_FAMILY_KILLERS));
401 if(found!=std::string::npos)
402 isSmthingStrange=true;
404 if(!isSmthingStrange)
407 std::map< std::string, std::vector<std::string> > m;
408 for(std::vector< std::string >::const_iterator it=famNames.begin();it!=famNames.end();it++)
410 std::size_t found((*it).find(ZE_SEP_FOR_FAMILY_KILLERS));
411 if(found!=std::string::npos && found>=1)
413 std::string s1((*it).substr(found+sizeof(ZE_SEP_FOR_FAMILY_KILLERS)-1));
414 if(s1.size()!=ZE_SEP2_FOR_FAMILY_KILLERS)
417 std::istringstream iss(s1);
419 bool isOK((iss.rdstate() & ( std::istream::failbit | std::istream::eofbit)) == std::istream::eofbit);
422 std::string s0((*it).substr(0,found));
423 m[s0].push_back(*it);
430 std::map<std::string,std::string> zeMap;
431 for(std::map< std::string, std::vector<std::string> >::const_iterator it=m.begin();it!=m.end();it++)
433 if((*it).second.size()==1)
435 for(std::vector<std::string>::const_iterator it1=(*it).second.begin();it1!=(*it).second.end();it1++)
436 zeMap[*it1]=(*it).first;
441 for(std::vector< std::string >::iterator it=famNames.begin();it!=famNames.end();it++)
443 std::map<std::string,std::string>::iterator it1(zeMap.find(*it));
450 MEDCoupling::MEDCouplingAxisType MEDFileMeshL2::TraduceAxisType(med_axis_type at)
456 case MED_CYLINDRICAL:
460 case MED_UNDEF_AXIS_TYPE:
463 throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisType : unrecognized axis type !");
467 MEDCoupling::MEDCouplingAxisType MEDFileMeshL2::TraduceAxisTypeStruct(med_grid_type gt)
471 case MED_CARTESIAN_GRID:
476 throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisTypeStruct : only Cartesian and Cylindrical supported by MED file !");
480 med_axis_type MEDFileMeshL2::TraduceAxisTypeRev(MEDCoupling::MEDCouplingAxisType at)
485 return MED_CARTESIAN;
487 return MED_CYLINDRICAL;
489 return MED_SPHERICAL;
491 throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisTypeRev : unrecognized axis type !");
495 med_grid_type MEDFileMeshL2::TraduceAxisTypeRevStruct(MEDCoupling::MEDCouplingAxisType at)
500 return MED_CARTESIAN_GRID;
502 return MED_POLAR_GRID;
504 return MED_POLAR_GRID;
506 throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisTypeRevStruct : unrecognized axis type !");
510 MEDFileUMeshL2::MEDFileUMeshL2()
514 std::vector<std::string> MEDFileUMeshL2::loadCommonPart(med_idt fid, const MeshOrStructMeshCls *mId, const std::string& mName, int dt, int it, int& Mdim)
517 _name.set(mName.c_str());
519 MEDCoupling::MEDCouplingMeshType meshType;
520 MEDCoupling::MEDCouplingAxisType dummy3;
521 std::vector<std::string> ret(getAxisInfoOnMesh(fid,mId,mName.c_str(),meshType,dummy3,nstep,Mdim));
525 return std::vector<std::string>();
527 if(meshType!=UNSTRUCTURED)
528 throw INTERP_KERNEL::Exception("Invalid mesh type ! You are expected an unstructured one whereas in file it is not an unstructured !");
529 _time=mId->checkMeshTimeStep(fid,mName,nstep,dt,it);
535 void MEDFileUMeshL2::loadAll(med_idt fid, const MeshOrStructMeshCls *mId, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
538 std::vector<std::string> infosOnComp(loadCommonPart(fid,mId,mName,dt,it,Mdim));
541 loadConnectivity(fid,Mdim,mName,dt,it,mrs);//to improve check (dt,it) coherency
542 loadCoords(fid,infosOnComp,mName,dt,it);
545 void MEDFileUMeshL2::loadPart(med_idt fid, const MeshOrStructMeshCls *mId, const std::string& mName, const std::vector<INTERP_KERNEL::NormalizedCellType>& types, const std::vector<int>& slicPerTyp, int dt, int it, MEDFileMeshReadSelector *mrs)
548 std::vector<std::string> infosOnComp(loadCommonPart(fid,mId,mName,dt,it,Mdim));
551 loadPartOfConnectivity(fid,Mdim,mName,types,slicPerTyp,dt,it,mrs);
552 med_bool changement,transformation;
553 int nCoords(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation));
554 std::vector<bool> fetchedNodeIds(nCoords,false);
555 for(std::vector< std::vector< MCAuto<MEDFileUMeshPerType> > >::const_iterator it0=_per_type_mesh.begin();it0!=_per_type_mesh.end();it0++)
556 for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it1=(*it0).begin();it1!=(*it0).end();it1++)
557 (*it1)->getMesh()->computeNodeIdsAlg(fetchedNodeIds);
558 int nMin(std::distance(fetchedNodeIds.begin(),std::find(fetchedNodeIds.begin(),fetchedNodeIds.end(),true)));
559 int nMax(std::distance(fetchedNodeIds.rbegin(),std::find(fetchedNodeIds.rbegin(),fetchedNodeIds.rend(),true)));
561 for(std::vector< std::vector< MCAuto<MEDFileUMeshPerType> > >::const_iterator it0=_per_type_mesh.begin();it0!=_per_type_mesh.end();it0++)
562 for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it1=(*it0).begin();it1!=(*it0).end();it1++)
563 (*it1)->getMesh()->renumberNodesWithOffsetInConn(-nMin);
564 loadPartCoords(fid,infosOnComp,mName,dt,it,nMin,nMax);
567 void MEDFileUMeshL2::loadConnectivity(med_idt fid, int mdim, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
569 _per_type_mesh.resize(1);
570 _per_type_mesh[0].clear();
571 for(int j=0;j<MED_N_CELL_FIXED_GEO;j++)
573 MEDFileUMeshPerType *tmp(MEDFileUMeshPerType::New(fid,mName.c_str(),dt,it,mdim,typmai[j],typmai2[j],mrs));
575 _per_type_mesh[0].push_back(tmp);
580 void MEDFileUMeshL2::loadPartOfConnectivity(med_idt fid, int mdim, const std::string& mName, const std::vector<INTERP_KERNEL::NormalizedCellType>& types, const std::vector<int>& slicPerTyp, int dt, int it, MEDFileMeshReadSelector *mrs)
582 std::size_t nbOfTypes(types.size());
583 if(slicPerTyp.size()!=3*nbOfTypes)
584 throw INTERP_KERNEL::Exception("MEDFileUMeshL2::loadPartOfConnectivity : The size of slicPerTyp array is expected to be equal to 3 times size of array types !");
585 std::set<INTERP_KERNEL::NormalizedCellType> types2(types.begin(),types.end());
586 if(types2.size()!=nbOfTypes)
587 throw INTERP_KERNEL::Exception("MEDFileUMeshL2::loadPartOfConnectivity : the geometric types in types array must appear once !");
588 _per_type_mesh.resize(1);
589 _per_type_mesh[0].clear();
590 for(std::size_t ii=0;ii<nbOfTypes;ii++)
592 int strt(slicPerTyp[3*ii+0]),stp(slicPerTyp[3*ii+1]),step(slicPerTyp[3*ii+2]);
593 MCAuto<MEDFileUMeshPerType> tmp(MEDFileUMeshPerType::NewPart(fid,mName.c_str(),dt,it,mdim,types[ii],strt,stp,step,mrs));
594 _per_type_mesh[0].push_back(tmp);
599 void MEDFileUMeshL2::loadCoords(med_idt fid, const std::vector<std::string>& infosOnComp, const std::string& mName, int dt, int it)
601 int spaceDim((int)infosOnComp.size());
602 med_bool changement,transformation;
603 int nCoords(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation));
604 _coords=DataArrayDouble::New();
605 _coords->alloc(nCoords,spaceDim);
606 double *coordsPtr(_coords->getPointer());
608 MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateRd,(fid,mName.c_str(),dt,it,MED_FULL_INTERLACE,coordsPtr));
609 if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_FAMILY_NUMBER,MED_NODAL,&changement,&transformation)>0)
611 _fam_coords=DataArrayInt::New();
612 _fam_coords->alloc(nCoords,1);
613 MEDFILESAFECALLERRD0(MEDmeshEntityFamilyNumberRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_fam_coords->getPointer()));
617 if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NUMBER,MED_NODAL,&changement,&transformation)>0)
619 _num_coords=DataArrayInt::New();
620 _num_coords->alloc(nCoords,1);
621 MEDFILESAFECALLERRD0(MEDmeshEntityNumberRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_num_coords->getPointer()));
625 if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NAME,MED_NODAL,&changement,&transformation)>0)
627 _name_coords=DataArrayAsciiChar::New();
628 _name_coords->alloc(nCoords+1,MED_SNAME_SIZE);//not a bug to avoid the memory corruption due to last \0 at the end
629 MEDFILESAFECALLERRD0(MEDmeshEntityNameRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_name_coords->getPointer()));
630 _name_coords->reAlloc(nCoords);//not a bug to avoid the memory corruption due to last \0 at the end
634 for(int i=0;i<spaceDim;i++)
635 _coords->setInfoOnComponent(i,infosOnComp[i]);
638 void MEDFileUMeshL2::loadPartCoords(med_idt fid, const std::vector<std::string>& infosOnComp, const std::string& mName, int dt, int it, int nMin, int nMax)
640 med_bool changement,transformation;
641 int spaceDim((int)infosOnComp.size()),nCoords(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation));
642 _coords=DataArrayDouble::New();
643 int nbNodesToLoad(nMax-nMin);
644 _coords->alloc(nbNodesToLoad,spaceDim);
645 med_filter filter=MED_FILTER_INIT,filter2=MED_FILTER_INIT;
646 MEDfilterBlockOfEntityCr(fid,/*nentity*/nCoords,/*nvaluesperentity*/1,/*nconstituentpervalue*/spaceDim,
647 MED_ALL_CONSTITUENT,MED_FULL_INTERLACE,MED_COMPACT_STMODE,MED_NO_PROFILE,
648 /*start*/nMin+1,/*stride*/1,/*count*/1,/*blocksize*/nbNodesToLoad,
649 /*lastblocksize=useless because count=1*/0,&filter);
650 MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateAdvancedRd,(fid,mName.c_str(),dt,it,&filter,_coords->getPointer()));
651 _part_coords=PartDefinition::New(nMin,nMax,1);
652 MEDfilterClose(&filter);
653 MEDfilterBlockOfEntityCr(fid,nCoords,1,1,MED_ALL_CONSTITUENT,MED_FULL_INTERLACE,MED_COMPACT_STMODE,
654 MED_NO_PROFILE,nMin+1,1,1,nbNodesToLoad,0,&filter2);
655 if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_FAMILY_NUMBER,MED_NODAL,&changement,&transformation)>0)
657 _fam_coords=DataArrayInt::New();
658 _fam_coords->alloc(nbNodesToLoad,1);
659 MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_FAMILY_NUMBER,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_fam_coords->getPointer()));
663 if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NUMBER,MED_NODAL,&changement,&transformation)>0)
665 _num_coords=DataArrayInt::New();
666 _num_coords->alloc(nbNodesToLoad,1);
667 MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_NUMBER,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_num_coords->getPointer()));
671 if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NAME,MED_NODAL,&changement,&transformation)>0)
673 _name_coords=DataArrayAsciiChar::New();
674 _name_coords->alloc(nbNodesToLoad+1,MED_SNAME_SIZE);//not a bug to avoid the memory corruption due to last \0 at the end
675 MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_NAME,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_name_coords->getPointer()));
676 _name_coords->reAlloc(nbNodesToLoad);//not a bug to avoid the memory corruption due to last \0 at the end
680 MEDfilterClose(&filter2);
681 _coords->setInfoOnComponents(infosOnComp);
684 void MEDFileUMeshL2::sortTypes()
687 std::vector< MCAuto<MEDFileUMeshPerType> > tmp(_per_type_mesh[0]);
688 _per_type_mesh.clear();
689 for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it=tmp.begin();it!=tmp.end();it++)
690 mdims.insert((*it)->getDim());
693 int mdim=*mdims.rbegin();
694 _per_type_mesh.resize(mdim+1);
695 for(int dim=mdim+1;dim!=0;dim--)
697 std::vector< MCAuto<MEDFileUMeshPerType> >& elt=_per_type_mesh[mdim+1-dim];
698 for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it=tmp.begin();it!=tmp.end();it++)
699 if((*it)->getDim()==dim-1)
702 // suppression of contiguous empty levels at the end of _per_type_mesh.
703 int nbOfUselessLev=0;
705 for(std::vector< std::vector< MCAuto<MEDFileUMeshPerType> > >::reverse_iterator it2=_per_type_mesh.rbegin();it2!=_per_type_mesh.rend();it2++)
707 if((*it2).empty() && isFirst)
714 _per_type_mesh.resize(_per_type_mesh.size()-nbOfUselessLev);
717 void MEDFileUMeshL2::WriteCoords(med_idt fid, const std::string& mname, int dt, int it, double time, const DataArrayDouble *coords, const DataArrayInt *famCoords, const DataArrayInt *numCoords, const DataArrayAsciiChar *nameCoords)
721 MEDFILESAFECALLERWR0(MEDmeshNodeCoordinateWr,(fid,mname.c_str(),dt,it,time,MED_FULL_INTERLACE,coords->getNumberOfTuples(),coords->getConstPointer()));
723 MEDFILESAFECALLERWR0(MEDmeshEntityFamilyNumberWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,famCoords->getNumberOfTuples(),famCoords->getConstPointer()));
725 MEDFILESAFECALLERWR0(MEDmeshEntityNumberWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,numCoords->getNumberOfTuples(),numCoords->getConstPointer()));
728 if(nameCoords->getNumberOfComponents()!=MED_SNAME_SIZE)
730 std::ostringstream oss; oss << " MEDFileUMeshL2::WriteCoords : expected a name field on nodes with number of components set to " << MED_SNAME_SIZE;
731 oss << " ! The array has " << nameCoords->getNumberOfComponents() << " components !";
732 throw INTERP_KERNEL::Exception(oss.str().c_str());
734 MEDFILESAFECALLERWR0(MEDmeshEntityNameWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,nameCoords->getNumberOfTuples(),nameCoords->getConstPointer()));
738 bool MEDFileUMeshL2::isFamDefinedOnLev(int levId) const
740 for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
741 if((*it)->getFam()==0)
746 bool MEDFileUMeshL2::isNumDefinedOnLev(int levId) const
748 for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
749 if((*it)->getNum()==0)
754 bool MEDFileUMeshL2::isNamesDefinedOnLev(int levId) const
756 for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
757 if((*it)->getNames()==0)
762 MEDFileCMeshL2::MEDFileCMeshL2():_ax_type(AX_CART)
766 void MEDFileCMeshL2::loadAll(med_idt fid, const MeshOrStructMeshCls *mId, const std::string& mName, int dt, int it)
768 _name.set(mName.c_str());
771 MEDCoupling::MEDCouplingMeshType meshType;
772 MEDCoupling::MEDCouplingAxisType dummy3;
773 std::vector<std::string> infosOnComp(getAxisInfoOnMesh(fid,mId,mName.c_str(),meshType,dummy3,nstep,Mdim));
774 if(meshType!=CARTESIAN)
775 throw INTERP_KERNEL::Exception("Invalid mesh type ! You are expected a structured one whereas in file it is not a structured !");
776 _time=mId->checkMeshTimeStep(fid,mName,nstep,dt,it);
780 med_grid_type gridtype;
781 MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mName.c_str(),&gridtype));
782 if(gridtype!=MED_CARTESIAN_GRID && gridtype!=MED_POLAR_GRID)
783 throw INTERP_KERNEL::Exception("Invalid rectilinear mesh ! Only cartesian and polar are supported !");
784 _ax_type=TraduceAxisTypeStruct(gridtype);
785 _cmesh=MEDCouplingCMesh::New();
786 for(int i=0;i<Mdim;i++)
788 med_data_type dataTypeReq=GetDataTypeCorrespondingToSpaceId(i);
789 med_bool chgt=MED_FALSE,trsf=MED_FALSE;
790 int nbOfElt(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,dataTypeReq,MED_NO_CMODE,&chgt,&trsf));
791 MCAuto<DataArrayDouble> da=DataArrayDouble::New();
792 da->alloc(nbOfElt,1);
793 da->setInfoOnComponent(0,infosOnComp[i]);
794 MEDFILESAFECALLERRD0(MEDmeshGridIndexCoordinateRd,(fid,mName.c_str(),dt,it,i+1,da->getPointer()));
795 _cmesh->setCoordsAt(i,da);
799 med_data_type MEDFileCMeshL2::GetDataTypeCorrespondingToSpaceId(int id)
804 return MED_COORDINATE_AXIS1;
806 return MED_COORDINATE_AXIS2;
808 return MED_COORDINATE_AXIS3;
810 throw INTERP_KERNEL::Exception("Invalid meshdim detected in Cartesian Grid !");
814 MEDFileCLMeshL2::MEDFileCLMeshL2()
818 void MEDFileCLMeshL2::loadAll(med_idt fid, const MeshOrStructMeshCls *mId, const std::string& mName, int dt, int it)
820 _name.set(mName.c_str());
823 MEDCoupling::MEDCouplingMeshType meshType;
824 MEDCoupling::MEDCouplingAxisType dummy3;
825 std::vector<std::string> infosOnComp(getAxisInfoOnMesh(fid,mId,mName,meshType,dummy3,nstep,Mdim));
826 if(meshType!=CURVE_LINEAR)
827 throw INTERP_KERNEL::Exception("Invalid mesh type ! You are expected a structured one whereas in file it is not a structured !");
828 _time=mId->checkMeshTimeStep(fid,mName,nstep,dt,it);
832 _clmesh=MEDCouplingCurveLinearMesh::New();
833 INTERP_KERNEL::AutoPtr<int> stGrid=new int[Mdim];
834 MEDFILESAFECALLERRD0(MEDmeshGridStructRd,(fid,mName.c_str(),dt,it,stGrid));
835 _clmesh->setNodeGridStructure(stGrid,((int *)stGrid)+Mdim);
836 med_bool chgt=MED_FALSE,trsf=MED_FALSE;
837 int nbNodes(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&chgt,&trsf));
838 MCAuto<DataArrayDouble> da=DataArrayDouble::New();
839 da->alloc(nbNodes,infosOnComp.size());
840 da->setInfoOnComponents(infosOnComp);
841 MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateRd,(fid,mName.c_str(),dt,it,MED_FULL_INTERLACE,da->getPointer()));
842 _clmesh->setCoords(da);
845 MEDFileUMeshPermCompute::MEDFileUMeshPermCompute(const MEDFileUMeshSplitL1* st):_st(st),_mpt_time(0),_num_time(0)
850 * Warning it returns an instance to deallocate !!!!
852 MEDFileUMeshPermCompute::operator MEDCouplingUMesh *() const
854 _st->_num->updateTime();
855 if((MEDCouplingUMesh *)_m==0)
858 _m=static_cast<MEDCouplingUMesh *>(_st->_m_by_types.getUmesh()->deepCopy());
859 _m->renumberCells(_st->_num->getConstPointer(),true);
864 if(_mpt_time==_st->_m_by_types.getTimeOfThis() && _num_time==_st->_num->getTimeOfThis())
869 _m=static_cast<MEDCouplingUMesh *>(_st->_m_by_types.getUmesh()->deepCopy());
870 _m->renumberCells(_st->_num->getConstPointer(),true);
876 void MEDFileUMeshPermCompute::operator=(MEDCouplingUMesh *m)
881 void MEDFileUMeshPermCompute::updateTime() const
883 _mpt_time=_st->_m_by_types.getTimeOfThis();
884 _num_time=_st->_num->getTimeOfThis();
887 std::vector<const BigMemoryObject *> MEDFileUMeshPermCompute::getDirectChildrenWithNull() const
889 std::vector<const BigMemoryObject *> ret;
890 ret.push_back((const MEDCouplingUMesh *)_m);
894 std::size_t MEDFileUMeshPermCompute::getHeapMemorySizeWithoutChildren() const
896 return sizeof(MEDFileUMeshPermCompute);
899 MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(const MEDFileUMeshSplitL1& other):RefCountObject(other),_m_by_types(other._m_by_types),_fam(other._fam),_num(other._num),_names(other._names),_rev_num(other._rev_num),_m(this)
903 MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(const MEDFileUMeshL2& l2, const std::string& mName, int id):_m(this)
905 const std::vector< MCAuto<MEDFileUMeshPerType> >& v=l2.getLev(id);
909 std::vector<const MEDCoupling1GTUMesh *> ms(sz);
910 std::vector<const DataArrayInt *> fams(sz),nums(sz);
911 std::vector<const DataArrayChar *> names(sz);
912 std::vector<const PartDefinition *> pds(sz);
913 for(int i=0;i<sz;i++)
915 MEDCoupling1GTUMesh *elt(v[i]->getMesh());
916 MCAuto<DataArrayDouble> tmp2=l2.getCoords();
917 elt->setCoords(tmp2);
919 pds[i]=v[i]->getPartDef();
921 _m_by_types.assignParts(ms);
922 _m_by_types.assignDefParts(pds);
923 if(l2.isFamDefinedOnLev(id))
925 for(int i=0;i<sz;i++)
926 fams[i]=v[i]->getFam();
928 _fam=DataArrayInt::Aggregate(fams);
932 _fam=const_cast<DataArrayInt *>(fams[0]);
935 if(l2.isNumDefinedOnLev(id))
937 for(int i=0;i<sz;i++)
938 nums[i]=v[i]->getNum();
940 _num=DataArrayInt::Aggregate(nums);
944 _num=const_cast<DataArrayInt *>(nums[0]);
948 if(l2.isNamesDefinedOnLev(id))
950 for(int i=0;i<sz;i++)
951 names[i]=v[i]->getNames();
952 _names=dynamic_cast<DataArrayAsciiChar *>(DataArrayChar::Aggregate(names));
956 MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(MEDCoupling1GTUMesh *m):_m(this)
958 std::vector< const MEDCoupling1GTUMesh * > v(1);
963 MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(MEDCouplingUMesh *m):_m(this)
968 MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(MEDCouplingUMesh *m, bool newOrOld):_m(this)
970 assignMesh(m,newOrOld);
973 void MEDFileUMeshSplitL1::setName(const std::string& name)
975 _m_by_types.setName(name);
978 std::size_t MEDFileUMeshSplitL1::getHeapMemorySizeWithoutChildren() const
983 std::vector<const BigMemoryObject *> MEDFileUMeshSplitL1::getDirectChildrenWithNull() const
985 std::vector<const BigMemoryObject *> ret;
986 ret.push_back(&_m_by_types);
988 ret.push_back((const DataArrayInt*)_fam);
989 ret.push_back((const DataArrayInt*)_num);
990 ret.push_back((const DataArrayInt*)_rev_num);
991 ret.push_back((const DataArrayAsciiChar*)_names);
995 MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::shallowCpyUsingCoords(DataArrayDouble *coords) const
997 MCAuto<MEDFileUMeshSplitL1> ret(new MEDFileUMeshSplitL1(*this));
998 ret->_m_by_types.shallowCpyMeshes();
999 ret->_m_by_types.setCoords(coords);
1003 MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::deepCopy(DataArrayDouble *coords) const
1005 MCAuto<MEDFileUMeshSplitL1> ret(new MEDFileUMeshSplitL1(*this));
1006 ret->_m_by_types=_m_by_types.deepCopy(coords);
1007 if((const DataArrayInt *)_fam)
1008 ret->_fam=_fam->deepCopy();
1009 if((const DataArrayInt *)_num)
1010 ret->_num=_num->deepCopy();
1011 if((const DataArrayInt *)_rev_num)
1012 ret->_rev_num=_rev_num->deepCopy();
1013 if((const DataArrayAsciiChar *)_names)
1014 ret->_names=_names->deepCopy();
1018 void MEDFileUMeshSplitL1::checkConsistency() const
1020 if (!_fam || _fam->getNumberOfTuples() != getSize())
1021 throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::checkConsistency(): internal family array has an invalid size!");
1022 int nbCells = getSize();
1025 _num->checkNbOfTuplesAndComp(nbCells,1,"MEDFileUMeshSplitL1::checkConsistency(): inconsistent internal node numbering array!");
1027 int maxValue=_num->getMaxValue(pos);
1028 if (!_rev_num || _rev_num->getNumberOfTuples() != (maxValue+1))
1029 throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::checkConsistency(): inconsistent internal revert node numbering array!");
1031 if ((_num && !_rev_num) || (!_num && _rev_num))
1032 throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::checkConsistency(): inconsistent internal numbering arrays (one is null)!");
1033 if (_num && !_num->hasUniqueValues())
1034 throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::checkConsistency(): inconsistent internal node numbering array: duplicates found!");
1036 _names->checkNbOfTuplesAndComp(nbCells,1,"MEDFileUMeshSplitL1::checkConsistency(): internal cell naming array has an invalid size!");
1038 _m_by_types.checkConsistency();
1041 bool MEDFileUMeshSplitL1::isEqual(const MEDFileUMeshSplitL1 *other, double eps, std::string& what) const
1043 if(!_m_by_types.isEqual(other->_m_by_types,eps,what))
1045 const DataArrayInt *d1=_fam;
1046 const DataArrayInt *d2=other->_fam;
1047 if((d1==0 && d2!=0) || (d1!=0 && d2==0))
1049 what="Presence of family arr in one sublevel and not in other!";
1053 if(!d1->isEqual(*d2))
1055 what="family arr at a sublevel are not deeply equal !";
1060 if((d1==0 && d2!=0) || (d1!=0 && d2==0))
1062 what="Presence of cell numbering arr in one sublevel and not in other!";
1066 if(!d1->isEqual(*d2))
1068 what="Numbering cell arr at a sublevel are not deeply equal !";
1071 const DataArrayAsciiChar *e1=_names;
1072 const DataArrayAsciiChar *e2=other->_names;
1073 if((e1==0 && e2!=0) || (e1!=0 && e2==0))
1075 what="Presence of cell names arr in one sublevel and not in other!";
1079 if(!e1->isEqual(*e2))
1081 what="Name cell arr at a sublevel are not deeply equal !";
1087 void MEDFileUMeshSplitL1::synchronizeTinyInfo(const MEDFileMesh& master) const
1089 _m_by_types.synchronizeTinyInfo(master);
1092 void MEDFileUMeshSplitL1::clearNonDiscrAttributes() const
1094 _m_by_types.clearNonDiscrAttributes();
1097 void MEDFileUMeshSplitL1::ClearNonDiscrAttributes(const MEDCouplingMesh *tmp)
1101 (const_cast<MEDCouplingMesh *>(tmp))->setName("");
1102 (const_cast<MEDCouplingMesh *>(tmp))->setDescription("");
1103 (const_cast<MEDCouplingMesh *>(tmp))->setTime(0.,-1,-1);
1104 (const_cast<MEDCouplingMesh *>(tmp))->setTimeUnit("");
1107 void MEDFileUMeshSplitL1::setCoords(DataArrayDouble *coords)
1109 _m_by_types.setCoords(coords);
1112 void MEDFileUMeshSplitL1::assignMesh(MEDCouplingUMesh *m, bool newOrOld)
1118 _m_by_types.assignUMesh(dynamic_cast<MEDCouplingUMesh *>(m->deepCopy()));
1119 MCAuto<DataArrayInt> da=_m_by_types.getUmesh()->getRenumArrForConsecutiveCellTypesSpec(typmai2,typmai2+MED_N_CELL_FIXED_GEO);
1120 if(!da->isIota(m->getNumberOfCells()))
1122 _num=da->invertArrayO2N2N2O(m->getNumberOfCells());
1125 _m_by_types.getUmesh()->renumberCells(da->getConstPointer(),false);
1130 if(!m->checkConsecutiveCellTypesAndOrder(typmai2,typmai2+MED_N_CELL_FIXED_GEO))
1131 throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::assignMesh(): the mesh does not follow the MED file numbering convention! Invoke sortCellsInMEDFileFrmt() first!");
1133 _m_by_types.assignUMesh(m);
1138 void MEDFileUMeshSplitL1::forceComputationOfParts() const
1140 _m_by_types.forceComputationOfPartsFromUMesh();
1143 void MEDFileUMeshSplitL1::assignParts(const std::vector< const MEDCoupling1GTUMesh * >& mParts)
1145 _m_by_types.assignParts(mParts);
1149 MEDFileUMeshSplitL1::MEDFileUMeshSplitL1():_m(this)
1153 void MEDFileUMeshSplitL1::assignCommonPart()
1155 _fam=DataArrayInt::New();
1156 _fam->alloc(_m_by_types.getSize(),1);
1157 _fam->fillWithValue(0);
1160 bool MEDFileUMeshSplitL1::empty() const
1162 return _m_by_types.empty();
1165 bool MEDFileUMeshSplitL1::presenceOfOneFams(const std::vector<int>& ids) const
1167 const DataArrayInt *fam=_fam;
1170 return fam->presenceOfValue(ids);
1173 int MEDFileUMeshSplitL1::getMeshDimension() const
1175 return _m_by_types.getMeshDimension();
1178 void MEDFileUMeshSplitL1::simpleRepr(std::ostream& oss) const
1180 std::vector<int> code=_m_by_types.getDistributionOfTypes();
1181 int nbOfTypes=code.size()/3;
1182 for(int i=0;i<nbOfTypes;i++)
1184 INTERP_KERNEL::NormalizedCellType typ=(INTERP_KERNEL::NormalizedCellType) code[3*i];
1185 oss << " - Number of cells with type " << INTERP_KERNEL::CellModel::GetCellModel(typ).getRepr() << " : " << code[3*i+1] << std::endl;
1189 int MEDFileUMeshSplitL1::getSize() const
1191 return _m_by_types.getSize();
1194 MEDCouplingUMesh *MEDFileUMeshSplitL1::getFamilyPart(const int *idsBg, const int *idsEnd, bool renum) const
1196 MCAuto<DataArrayInt> eltsToKeep=_fam->findIdsEqualList(idsBg,idsEnd);
1197 MEDCouplingUMesh *m=(MEDCouplingUMesh *)_m_by_types.getUmesh()->buildPartOfMySelf(eltsToKeep->getConstPointer(),eltsToKeep->getConstPointer()+eltsToKeep->getNumberOfTuples(),true);
1199 return renumIfNeeded(m,eltsToKeep->getConstPointer());
1203 DataArrayInt *MEDFileUMeshSplitL1::getFamilyPartArr(const int *idsBg, const int *idsEnd, bool renum) const
1205 MCAuto<DataArrayInt> da=_fam->findIdsEqualList(idsBg,idsEnd);
1207 return renumIfNeededArr(da);
1211 std::vector<INTERP_KERNEL::NormalizedCellType> MEDFileUMeshSplitL1::getGeoTypes() const
1213 return _m_by_types.getGeoTypes();
1216 int MEDFileUMeshSplitL1::getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType ct) const
1218 return _m_by_types.getNumberOfCellsWithType(ct);
1221 MEDCouplingUMesh *MEDFileUMeshSplitL1::getWholeMesh(bool renum) const
1223 MCAuto<MEDCouplingUMesh> tmp;
1224 if(renum && ((const DataArrayInt *)_num))
1227 { tmp=_m_by_types.getUmesh(); if(tmp) tmp->incrRef(); }
1231 int MEDFileUMeshSplitL1::getNumberOfCells() const
1233 return _m_by_types.getNumberOfCells();
1236 DataArrayInt *MEDFileUMeshSplitL1::extractFamilyFieldOnGeoType(INTERP_KERNEL::NormalizedCellType gt) const
1238 const DataArrayInt *fam(_fam);
1241 int start(0),stop(0);
1242 _m_by_types.getStartStopOfGeoTypeWithoutComputation(gt,start,stop);
1243 return fam->selectByTupleIdSafeSlice(start,stop,1);
1246 DataArrayInt *MEDFileUMeshSplitL1::extractNumberFieldOnGeoType(INTERP_KERNEL::NormalizedCellType gt) const
1248 const DataArrayInt *num(_num);
1251 int start(0),stop(0);
1252 _m_by_types.getStartStopOfGeoTypeWithoutComputation(gt,start,stop);
1253 return num->selectByTupleIdSafeSlice(start,stop,1);
1256 DataArrayInt *MEDFileUMeshSplitL1::getOrCreateAndGetFamilyField()
1258 if((DataArrayInt *)_fam)
1260 int nbOfTuples=_m_by_types.getSize();
1261 _fam=DataArrayInt::New(); _fam->alloc(nbOfTuples,1); _fam->fillWithZero();
1265 const DataArrayInt *MEDFileUMeshSplitL1::getFamilyField() const
1270 const DataArrayInt *MEDFileUMeshSplitL1::getNumberField() const
1275 const DataArrayInt *MEDFileUMeshSplitL1::getRevNumberField() const
1280 const DataArrayAsciiChar *MEDFileUMeshSplitL1::getNameField() const
1285 const PartDefinition *MEDFileUMeshSplitL1::getPartDef(INTERP_KERNEL::NormalizedCellType gt) const
1287 return _m_by_types.getPartDefOfWithoutComputation(gt);
1290 void MEDFileUMeshSplitL1::eraseFamilyField()
1292 _fam->fillWithZero();
1296 * This method ignores _m and _m_by_types.
1298 void MEDFileUMeshSplitL1::setGroupsFromScratch(const std::vector<const MEDCouplingUMesh *>& ms, std::map<std::string,int>& familyIds,
1299 std::map<std::string, std::vector<std::string> >& groups)
1301 std::vector< DataArrayInt * > corr;
1302 _m=MEDCouplingUMesh::FuseUMeshesOnSameCoords(ms,0,corr);
1303 std::vector< MCAuto<DataArrayInt> > corrMSafe(corr.begin(),corr.end());
1304 std::vector< std::vector<int> > fidsOfGroups;
1305 std::vector< const DataArrayInt * > corr2(corr.begin(),corr.end());
1306 _fam=DataArrayInt::MakePartition(corr2,((MEDCouplingUMesh *)_m)->getNumberOfCells(),fidsOfGroups);
1307 int nbOfCells=((MEDCouplingUMesh *)_m)->getNumberOfCells();
1308 std::map<int,std::string> newfams;
1309 std::map<int,int> famIdTrad;
1310 TraduceFamilyNumber(fidsOfGroups,familyIds,famIdTrad,newfams);
1311 int *w=_fam->getPointer();
1312 for(int i=0;i<nbOfCells;i++,w++)
1316 void MEDFileUMeshSplitL1::write(med_idt fid, const std::string& mName, int mdim) const
1318 std::vector<MEDCoupling1GTUMesh *> ms(_m_by_types.getParts());
1320 for(std::vector<MEDCoupling1GTUMesh *>::const_iterator it=ms.begin();it!=ms.end();it++)
1322 int nbCells=(*it)->getNumberOfCells();
1323 int end=start+nbCells;
1324 MCAuto<DataArrayInt> fam,num;
1325 MCAuto<DataArrayAsciiChar> names;
1326 if((const DataArrayInt *)_fam)
1327 fam=_fam->subArray(start,end);
1328 if((const DataArrayInt *)_num)
1329 num=_num->subArray(start,end);
1330 if((const DataArrayAsciiChar *)_names)
1331 names=static_cast<DataArrayAsciiChar *>(_names->subArray(start,end));
1332 MEDFileUMeshPerType::Write(fid,mName,mdim,(*it),fam,num,names);
1337 void MEDFileUMeshSplitL1::renumberNodesInConn(const int *newNodeNumbersO2N)
1339 _m_by_types.renumberNodesInConnWithoutComputation(newNodeNumbersO2N);
1342 void MEDFileUMeshSplitL1::serialize(std::vector<int>& tinyInt, std::vector< MCAuto<DataArrayInt> >& bigArraysI) const
1344 bigArraysI.push_back(_fam);
1345 bigArraysI.push_back(_num);
1346 _m_by_types.serialize(tinyInt,bigArraysI);
1349 void MEDFileUMeshSplitL1::unserialize(const std::string& name, DataArrayDouble *coo, std::vector<int>& tinyInt, std::vector< MCAuto<DataArrayInt> >& bigArraysI)
1351 _fam=bigArraysI.back(); bigArraysI.pop_back();
1352 _num=bigArraysI.back(); bigArraysI.pop_back();
1353 _m_by_types.unserialize(name,coo,tinyInt,bigArraysI);
1356 void MEDFileUMeshSplitL1::changeFamilyIdArr(int oldId, int newId)
1358 DataArrayInt *arr=_fam;
1360 arr->changeValue(oldId,newId);
1363 void MEDFileUMeshSplitL1::setFamilyArr(DataArrayInt *famArr)
1370 int sz(_m_by_types.getSize());
1371 famArr->checkNbOfTuplesAndComp(sz,1,"MEDFileUMeshSplitL1::setFamilyArr : Problem in size of Family arr ! ");
1376 DataArrayInt *MEDFileUMeshSplitL1::getFamilyField()
1381 void MEDFileUMeshSplitL1::setRenumArr(DataArrayInt *renumArr)
1389 int sz(_m_by_types.getSize());
1390 renumArr->checkNbOfTuplesAndComp(sz,1,"MEDFileUMeshSplitL1::setRenumArr : Problem in size of numbering arr ! ");
1391 renumArr->incrRef();
1396 void MEDFileUMeshSplitL1::setNameArr(DataArrayAsciiChar *nameArr)
1403 int sz(_m_by_types.getSize());
1404 nameArr->checkNbOfTuplesAndComp(sz,MED_SNAME_SIZE,"MEDFileUMeshSplitL1::setNameArr : Problem in size of name arr ! ");
1409 MEDCouplingUMesh *MEDFileUMeshSplitL1::Renumber2(const DataArrayInt *renum, MEDCouplingUMesh *m, const int *cellIds)
1414 m->renumberCells(renum->getConstPointer(),true);
1417 MCAuto<DataArrayInt> locnum=renum->selectByTupleId(cellIds,cellIds+m->getNumberOfCells());
1418 m->renumberCells(locnum->getConstPointer(),true);
1423 MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::Unserialize(const std::string& name, DataArrayDouble *coo, std::vector<int>& tinyInt, std::vector< MCAuto<DataArrayInt> >& bigArraysI)
1425 MCAuto<MEDFileUMeshSplitL1> ret(new MEDFileUMeshSplitL1);
1426 ret->unserialize(name,coo,tinyInt,bigArraysI);
1430 MEDCouplingUMesh *MEDFileUMeshSplitL1::renumIfNeeded(MEDCouplingUMesh *m, const int *cellIds) const
1432 return Renumber2(_num,m,cellIds);
1435 DataArrayInt *MEDFileUMeshSplitL1::Renumber(const DataArrayInt *renum, const DataArrayInt *da)
1437 if((const DataArrayInt *)renum==0)
1440 return const_cast<DataArrayInt *>(da);
1442 return renum->selectByTupleId(da->getConstPointer(),da->getConstPointer()+da->getNumberOfTuples());
1445 DataArrayInt *MEDFileUMeshSplitL1::renumIfNeededArr(const DataArrayInt *da) const
1447 return Renumber(_num,da);
1450 std::vector<int> MEDFileUMeshSplitL1::GetNewFamiliesNumber(int nb, const std::map<std::string,int>& families)
1453 for(std::map<std::string,int>::const_iterator it=families.begin();it!=families.end();it++)
1454 id=std::max(id,(*it).second);
1457 std::vector<int> ret(nb);
1458 for(int i=1;i<=nb;i++)
1463 void MEDFileUMeshSplitL1::TraduceFamilyNumber(const std::vector< std::vector<int> >& fidsGrps, std::map<std::string,int>& familyIds,
1464 std::map<int,int>& famIdTrad, std::map<int,std::string>& newfams)
1466 std::set<int> allfids;
1470 void MEDFileUMeshSplitL1::computeRevNum() const
1473 int maxValue=_num->getMaxValue(pos);
1474 _rev_num=_num->invertArrayN2O2O2N(maxValue+1);
1479 MEDFileUMeshAggregateCompute::MEDFileUMeshAggregateCompute():_mp_time(0),_m_time(0)
1483 void MEDFileUMeshAggregateCompute::setName(const std::string& name)
1485 if(_m_time>=_mp_time)
1487 MEDCouplingUMesh *um(_m);
1491 if(_mp_time>=_m_time)
1493 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1495 MEDCoupling1GTUMesh *tmp(*it);
1502 void MEDFileUMeshAggregateCompute::assignParts(const std::vector< const MEDCoupling1GTUMesh * >& mParts)
1504 std::size_t sz(mParts.size());
1505 std::vector< MCAuto<MEDCoupling1GTUMesh> > ret(sz);
1506 for(std::size_t i=0;i<sz;i++)
1508 const MEDCoupling1GTUMesh *elt(mParts[i]);
1510 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::assignParts : presence of null pointer !");
1511 ret[i]=const_cast<MEDCoupling1GTUMesh *>(elt); elt->incrRef();
1514 _part_def.clear(); _part_def.resize(sz);
1515 _mp_time=std::max(_mp_time,_m_time)+1;
1519 void MEDFileUMeshAggregateCompute::assignDefParts(const std::vector<const PartDefinition *>& partDefs)
1521 if(_mp_time<_m_time)
1522 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::assignDefParts : the parts require a computation !");
1523 std::size_t sz(partDefs.size());
1524 if(_part_def.size()!=partDefs.size() || _part_def.size()!=_m_parts.size())
1525 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::assignDefParts : sizes of vectors of part definition mismatch !");
1526 for(std::size_t i=0;i<sz;i++)
1528 const PartDefinition *elt(partDefs[i]);
1531 _part_def[i]=const_cast<PartDefinition*>(elt);
1535 void MEDFileUMeshAggregateCompute::assignUMesh(MEDCouplingUMesh *m)
1539 _m_time=std::max(_mp_time,_m_time)+1;
1542 MEDCouplingUMesh *MEDFileUMeshAggregateCompute::getUmesh() const
1544 if(_mp_time<=_m_time)
1546 std::vector< const MEDCoupling1GTUMesh *> mp(_m_parts.size());
1547 std::copy(_m_parts.begin(),_m_parts.end(),mp.begin());
1548 _m=MEDCoupling1GTUMesh::AggregateOnSameCoordsToUMesh(mp);
1549 _m_parts.clear();//to avoid memory peak !
1550 _m_time=_mp_time+1;//+1 is important ! That is to say that only _m is OK not _m_parts because cleared !
1554 int MEDFileUMeshAggregateCompute::getNumberOfCells() const
1556 if(_mp_time<=_m_time)
1557 return _m->getNumberOfCells();
1559 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1560 ret+=(*it)->getNumberOfCells();
1564 std::vector<INTERP_KERNEL::NormalizedCellType> MEDFileUMeshAggregateCompute::getGeoTypes() const
1566 if(_mp_time>=_m_time)
1568 std::size_t sz(_m_parts.size());
1569 std::vector<INTERP_KERNEL::NormalizedCellType> ret(sz);
1570 for(std::size_t i=0;i<sz;i++)
1571 ret[i]=_m_parts[i]->getCellModelEnum();
1575 return _m->getAllGeoTypesSorted();
1578 int MEDFileUMeshAggregateCompute::getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType ct) const
1580 if(_mp_time>=_m_time)
1582 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1584 const MEDCoupling1GTUMesh *elt(*it);
1585 if(elt && elt->getCellModelEnum()==ct)
1586 return elt->getNumberOfCells();
1591 return _m->getNumberOfCellsWithType(ct);
1594 std::vector<MEDCoupling1GTUMesh *> MEDFileUMeshAggregateCompute::retrievePartsWithoutComputation() const
1596 if(_mp_time<_m_time)
1597 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartsWithoutComputation : the parts require a computation !");
1599 std::vector<MEDCoupling1GTUMesh *> ret(_m_parts.size());
1601 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++,i++)
1603 const MEDCoupling1GTUMesh *elt(*it);
1604 ret[i]=const_cast<MEDCoupling1GTUMesh *>(elt);
1609 std::vector<MEDCoupling1GTUMesh *> MEDFileUMeshAggregateCompute::getParts() const
1611 if(_mp_time<_m_time)
1612 forceComputationOfPartsFromUMesh();
1613 return retrievePartsWithoutComputation();
1616 MEDCoupling1GTUMesh *MEDFileUMeshAggregateCompute::retrievePartWithoutComputation(INTERP_KERNEL::NormalizedCellType gt) const
1618 std::vector<MEDCoupling1GTUMesh *> v(retrievePartsWithoutComputation());
1619 std::size_t sz(v.size());
1620 for(std::size_t i=0;i<sz;i++)
1623 if(v[i]->getCellModelEnum()==gt)
1626 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartWithoutComputation : the geometric type is not existing !");
1629 void MEDFileUMeshAggregateCompute::getStartStopOfGeoTypeWithoutComputation(INTERP_KERNEL::NormalizedCellType gt, int& start, int& stop) const
1632 std::vector<MEDCoupling1GTUMesh *> v(retrievePartsWithoutComputation());
1633 std::size_t sz(v.size());
1634 for(std::size_t i=0;i<sz;i++)
1638 if(v[i]->getCellModelEnum()==gt)
1640 stop=start+v[i]->getNumberOfCells();
1644 start+=v[i]->getNumberOfCells();
1647 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getStartStopOfGeoTypeWithoutComputation : the geometric type is not existing !");
1650 void MEDFileUMeshAggregateCompute::renumberNodesInConnWithoutComputation(const int *newNodeNumbersO2N)
1652 if(_mp_time>_m_time)
1654 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1656 MEDCoupling1GTUMesh *m(*it);
1658 m->renumberNodesInConn(newNodeNumbersO2N);
1663 MEDCouplingUMesh *m(getUmesh());
1666 m->renumberNodesInConn(newNodeNumbersO2N);
1670 void MEDFileUMeshAggregateCompute::forceComputationOfPartsFromUMesh() const
1672 const MEDCouplingUMesh *m(_m);
1675 if(_m_parts.empty())
1676 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::forceComputationOfPartsFromUMesh : null UMesh !");
1678 return ;// no needs to compte parts they are already here !
1680 std::vector<MEDCouplingUMesh *> ms(m->splitByType());
1681 std::vector< MCAuto<MEDCouplingUMesh> > msMSafe(ms.begin(),ms.end());
1682 std::size_t sz(msMSafe.size());
1683 _m_parts.resize(sz);
1684 for(std::size_t i=0;i<sz;i++)
1685 _m_parts[i]=MEDCoupling1GTUMesh::New(ms[i]);
1687 _part_def.resize(_m_parts.size());
1688 _mp_time=std::max(_mp_time,_m_time);
1691 const PartDefinition *MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation(INTERP_KERNEL::NormalizedCellType gt) const
1693 if(_mp_time<_m_time)
1694 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation : the parts require a computation !");
1695 if(_m_parts.size()!=_part_def.size())
1696 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation : size of arrays are expected to be the same !");
1697 std::size_t sz(_m_parts.size());
1698 for(std::size_t i=0;i<sz;i++)
1700 const MEDCoupling1GTUMesh *mesh(_m_parts[i]);
1702 if(mesh->getCellModelEnum()==gt)
1703 return _part_def[i];
1705 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation : The input geo type is not existing in this !");
1708 void MEDFileUMeshAggregateCompute::serialize(std::vector<int>& tinyInt, std::vector< MCAuto<DataArrayInt> >& bigArraysI) const
1710 if(_mp_time<_m_time)
1711 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : the parts require a computation !");
1712 std::size_t sz(_m_parts.size());
1713 tinyInt.push_back((int)sz);
1714 for(std::size_t i=0;i<sz;i++)
1716 const MEDCoupling1GTUMesh *mesh(_m_parts[i]);
1718 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : one part is empty !");
1719 tinyInt.push_back(mesh->getCellModelEnum());
1720 const MEDCoupling1SGTUMesh *mesh1(dynamic_cast<const MEDCoupling1SGTUMesh *>(mesh));
1721 const MEDCoupling1DGTUMesh *mesh2(dynamic_cast<const MEDCoupling1DGTUMesh *>(mesh));
1724 DataArrayInt *elt(mesh1->getNodalConnectivity());
1727 MCAuto<DataArrayInt> elt1(elt);
1728 bigArraysI.push_back(elt1);
1732 DataArrayInt *elt1(mesh2->getNodalConnectivity()),*elt2(mesh2->getNodalConnectivityIndex());
1737 MCAuto<DataArrayInt> elt11(elt1),elt22(elt2);
1738 bigArraysI.push_back(elt11); bigArraysI.push_back(elt22);
1741 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : unrecognized single geo type mesh !");
1742 const PartDefinition *pd(_part_def[i]);
1744 tinyInt.push_back(-1);
1747 std::vector<int> tinyTmp;
1748 pd->serialize(tinyTmp,bigArraysI);
1749 tinyInt.push_back((int)tinyTmp.size());
1750 tinyInt.insert(tinyInt.end(),tinyTmp.begin(),tinyTmp.end());
1755 void MEDFileUMeshAggregateCompute::unserialize(const std::string& name, DataArrayDouble *coo, std::vector<int>& tinyInt, std::vector< MCAuto<DataArrayInt> >& bigArraysI)
1757 int nbParts(tinyInt.back()); tinyInt.pop_back();
1758 _part_def.clear(); _part_def.resize(nbParts);
1759 _m_parts.clear(); _m_parts.resize(nbParts);
1760 for(int i=0;i<nbParts;i++)
1762 INTERP_KERNEL::NormalizedCellType tp((INTERP_KERNEL::NormalizedCellType) tinyInt.back()); tinyInt.pop_back();
1763 MCAuto<MEDCoupling1GTUMesh> mesh(MEDCoupling1GTUMesh::New(name,tp));
1764 mesh->setCoords(coo);
1765 MEDCoupling1SGTUMesh *mesh1(dynamic_cast<MEDCoupling1SGTUMesh *>((MEDCoupling1GTUMesh *) mesh));
1766 MEDCoupling1DGTUMesh *mesh2(dynamic_cast<MEDCoupling1DGTUMesh *>((MEDCoupling1GTUMesh *) mesh));
1769 mesh1->setNodalConnectivity(bigArraysI.back()); bigArraysI.pop_back();
1773 MCAuto<DataArrayInt> elt0,elt1;
1774 elt0=bigArraysI.back(); bigArraysI.pop_back();
1775 elt1=bigArraysI.back(); bigArraysI.pop_back();
1776 mesh2->setNodalConnectivity(elt0,elt1);
1779 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::unserialize : unrecognized single geo type mesh !");
1781 int pdid(tinyInt.back()); tinyInt.pop_back();
1783 _part_def[i]=PartDefinition::Unserialize(tinyInt,bigArraysI);
1784 _mp_time=std::max(_mp_time,_m_time)+1;
1789 * This method returns true if \a this is stored split by type false if stored in a merged unstructured mesh.
1791 bool MEDFileUMeshAggregateCompute::isStoredSplitByType() const
1793 return _mp_time>=_m_time;
1796 std::size_t MEDFileUMeshAggregateCompute::getTimeOfThis() const
1798 if(_mp_time>_m_time)
1799 return getTimeOfParts();
1800 if(_m_time>_mp_time)
1801 return getTimeOfUMesh();
1802 return std::max(getTimeOfParts(),getTimeOfUMesh());
1805 std::size_t MEDFileUMeshAggregateCompute::getTimeOfParts() const
1808 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1810 const MEDCoupling1GTUMesh *elt(*it);
1812 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getTimeOfParts : null obj in parts !");
1813 ret=std::max(ret,elt->getTimeOfThis());
1816 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getTimeOfParts : parts is empty !");
1820 std::size_t MEDFileUMeshAggregateCompute::getTimeOfUMesh() const
1822 const MEDCouplingUMesh *m(_m);
1824 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getTimeOfUMesh : unmesh is null !");
1825 return m->getTimeOfThis();
1828 std::size_t MEDFileUMeshAggregateCompute::getHeapMemorySizeWithoutChildren() const
1830 std::size_t ret(_m_parts.size()*sizeof(MCAuto<MEDCoupling1GTUMesh>));
1834 std::vector<const BigMemoryObject *> MEDFileUMeshAggregateCompute::getDirectChildrenWithNull() const
1836 std::vector<const BigMemoryObject *> ret;
1837 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1838 ret.push_back((const MEDCoupling1GTUMesh *)*it);
1839 ret.push_back((const MEDCouplingUMesh *)_m);
1843 MEDFileUMeshAggregateCompute MEDFileUMeshAggregateCompute::deepCopy(DataArrayDouble *coords) const
1845 MEDFileUMeshAggregateCompute ret;
1846 ret._m_parts.resize(_m_parts.size());
1847 for(std::size_t i=0;i<_m_parts.size();i++)
1849 const MEDCoupling1GTUMesh *elt(_m_parts[i]);
1852 ret._m_parts[i]=static_cast<MEDCoupling::MEDCoupling1GTUMesh*>(elt->deepCopy());
1853 ret._m_parts[i]->setCoords(coords);
1856 ret._mp_time=_mp_time; ret._m_time=_m_time;
1857 if((const MEDCouplingUMesh *)_m)
1859 ret._m=static_cast<MEDCoupling::MEDCouplingUMesh*>(_m->deepCopy());
1860 ret._m->setCoords(coords);
1862 std::size_t sz(_part_def.size());
1863 ret._part_def.clear(); ret._part_def.resize(sz);
1864 for(std::size_t i=0;i<sz;i++)
1866 const PartDefinition *elt(_part_def[i]);
1868 ret._part_def[i]=elt->deepCopy();
1873 void MEDFileUMeshAggregateCompute::shallowCpyMeshes()
1875 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1877 const MEDCoupling1GTUMesh *elt(*it);
1880 MCAuto<MEDCouplingMesh> elt2(elt->clone(false));
1881 *it=DynamicCastSafe<MEDCouplingMesh,MEDCoupling1GTUMesh>(elt2);
1884 const MEDCouplingUMesh *m(_m);
1889 bool MEDFileUMeshAggregateCompute::isEqual(const MEDFileUMeshAggregateCompute& other, double eps, std::string& what) const
1891 const MEDCouplingUMesh *m1(getUmesh());
1892 const MEDCouplingUMesh *m2(other.getUmesh());
1893 if((m1==0 && m2!=0) || (m1!=0 && m2==0))
1895 what="Presence of mesh in one sublevel and not in other!";
1901 if(!m1->isEqualIfNotWhy(m2,eps,what2))
1903 what=std::string("meshes at a sublevel are not deeply equal (")+what2+std::string(")!");
1907 std::size_t sz(_part_def.size());
1908 if(sz!=other._part_def.size())
1910 what=std::string("number of subdivision per geo type for part definition is not the same !");
1913 for(std::size_t i=0;i<sz;i++)
1915 const PartDefinition *pd0(_part_def[i]),*pd1(other._part_def[i]);
1918 if((!pd0 && pd1) || (pd0 && !pd1))
1920 what=std::string("a cell part def is defined only for one among this or other !");
1923 bool ret(pd0->isEqual(pd1,what));
1930 void MEDFileUMeshAggregateCompute::checkConsistency() const
1932 if(_mp_time >= _m_time)
1933 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();
1934 it!=_m_parts.end(); it++)
1935 (*it)->checkConsistency();
1937 _m->checkConsistency();
1940 void MEDFileUMeshAggregateCompute::clearNonDiscrAttributes() const
1942 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1943 MEDFileUMeshSplitL1::ClearNonDiscrAttributes(*it);
1944 MEDFileUMeshSplitL1::ClearNonDiscrAttributes(_m);
1947 void MEDFileUMeshAggregateCompute::synchronizeTinyInfo(const MEDFileMesh& master) const
1949 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1951 const MEDCoupling1GTUMesh *tmp(*it);
1954 (const_cast<MEDCoupling1GTUMesh *>(tmp))->setName(master.getName().c_str());
1955 (const_cast<MEDCoupling1GTUMesh *>(tmp))->setDescription(master.getDescription().c_str());
1956 (const_cast<MEDCoupling1GTUMesh *>(tmp))->setTime(master.getTimeValue(),master.getIteration(),master.getOrder());
1957 (const_cast<MEDCoupling1GTUMesh *>(tmp))->setTimeUnit(master.getTimeUnit());
1960 const MEDCouplingUMesh *m(_m);
1963 (const_cast<MEDCouplingUMesh *>(m))->setName(master.getName().c_str());
1964 (const_cast<MEDCouplingUMesh *>(m))->setDescription(master.getDescription().c_str());
1965 (const_cast<MEDCouplingUMesh *>(m))->setTime(master.getTimeValue(),master.getIteration(),master.getOrder());
1966 (const_cast<MEDCouplingUMesh *>(m))->setTimeUnit(master.getTimeUnit());
1970 bool MEDFileUMeshAggregateCompute::empty() const
1972 if(_mp_time<_m_time)
1973 return ((const MEDCouplingUMesh *)_m)==0;
1974 //else _mp_time>=_m_time)
1975 return _m_parts.empty();
1978 int MEDFileUMeshAggregateCompute::getMeshDimension() const
1980 if(_mp_time<_m_time)
1982 const MEDCouplingUMesh *m(_m);
1984 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getMeshDimension : no umesh in this !");
1985 return m->getMeshDimension();
1989 if(_m_parts.empty())
1990 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getMeshDimension : part mesh is empty !");
1991 const MEDCoupling1GTUMesh *m(_m_parts[0]);
1993 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getMeshDimension : part mesh contains null instance !");
1994 return m->getMeshDimension();
1998 std::vector<int> MEDFileUMeshAggregateCompute::getDistributionOfTypes() const
2000 if(_mp_time<_m_time)
2002 const MEDCouplingUMesh *m(_m);
2004 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getDistributionOfTypes : no umesh in this !");
2005 return m->getDistributionOfTypes();
2009 std::vector<int> ret;
2010 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
2012 const MEDCoupling1GTUMesh *tmp(*it);
2014 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getDistributionOfTypes : part mesh contains null instance !");
2015 std::vector<int> ret0(tmp->getDistributionOfTypes());
2016 ret.insert(ret.end(),ret0.begin(),ret0.end());
2022 int MEDFileUMeshAggregateCompute::getSize() const
2024 if(_mp_time<_m_time)
2026 const MEDCouplingUMesh *m(_m);
2028 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getSize : no umesh in this !");
2029 return m->getNumberOfCells();
2034 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
2036 const MEDCoupling1GTUMesh *m(*it);
2038 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getSize : part mesh contains null instance !");
2039 ret+=m->getNumberOfCells();
2045 void MEDFileUMeshAggregateCompute::setCoords(DataArrayDouble *coords)
2047 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
2049 MEDCoupling1GTUMesh *tmp(*it);
2051 (*it)->setCoords(coords);
2053 MEDCouplingUMesh *m(_m);
2055 m->setCoords(coords);