1 // Copyright (C) 2007-2015 CEA/DEN, EDF R&D
3 // This library is free software; you can redistribute it and/or
4 // modify it under the terms of the GNU Lesser General Public
5 // License as published by the Free Software Foundation; either
6 // version 2.1 of the License, or (at your option) any later version.
8 // This library is distributed in the hope that it will be useful,
9 // but WITHOUT ANY WARRANTY; without even the implied warranty of
10 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
11 // Lesser General Public License for more details.
13 // You should have received a copy of the GNU Lesser General Public
14 // License along with this library; if not, write to the Free Software
15 // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
17 // See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
19 // Author : Anthony Geay (CEA/DEN)
21 #include "MEDFileMeshLL.hxx"
22 #include "MEDFileMesh.hxx"
23 #include "MEDLoaderBase.hxx"
24 #include "MEDFileSafeCaller.txx"
25 #include "MEDFileMeshReadSelector.hxx"
27 #include "MEDCouplingUMesh.hxx"
29 #include "InterpKernelAutoPtr.hxx"
30 #include "CellModel.hxx"
35 extern med_geometry_type typmai[MED_N_CELL_FIXED_GEO];
36 extern INTERP_KERNEL::NormalizedCellType typmai2[MED_N_CELL_FIXED_GEO];
37 extern med_geometry_type typmainoeud[1];
39 using namespace ParaMEDMEM;
41 const char MEDFileMeshL2::ZE_SEP_FOR_FAMILY_KILLERS[]="!/__\\!";//important start by - because ord('!')==33 the smallest (!=' ') to preserve orders at most.
43 int MEDFileMeshL2::ZE_SEP2_FOR_FAMILY_KILLERS=4;
45 MEDFileMeshL2::MEDFileMeshL2():_name(MED_NAME_SIZE),_description(MED_COMMENT_SIZE),_univ_name(MED_LNAME_SIZE),_dt_unit(MED_LNAME_SIZE)
49 std::size_t MEDFileMeshL2::getHeapMemorySizeWithoutChildren() const
54 std::vector<const BigMemoryObject *> MEDFileMeshL2::getDirectChildrenWithNull() const
56 return std::vector<const BigMemoryObject *>();
59 int MEDFileMeshL2::GetMeshIdFromName(med_idt fid, const std::string& mname, ParaMEDMEM::MEDCouplingMeshType& meshType, ParaMEDMEM::MEDCouplingAxisType& axType, int& dt, int& it, std::string& dtunit1)
61 med_mesh_type type_maillage;
62 char maillage_description[MED_COMMENT_SIZE+1];
63 char dtunit[MED_LNAME_SIZE+1];
65 char nommaa[MED_NAME_SIZE+1];
66 med_int n=MEDnMesh(fid);
69 med_sorting_type stype;
70 std::vector<std::string> ms;
72 med_axis_type axistype;
73 for(int i=0;i<n && !found;i++)
75 int naxis(MEDmeshnAxis(fid,i+1));
76 INTERP_KERNEL::AutoPtr<char> axisname=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
77 INTERP_KERNEL::AutoPtr<char> axisunit=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
78 MEDFILESAFECALLERRD0(MEDmeshInfo,(fid,i+1,nommaa,&spaceDim,&dim,&type_maillage,maillage_description,dtunit,&stype,&nstep,&axistype,axisname,axisunit));
80 dtunit1=MEDLoaderBase::buildStringFromFortran(dtunit,sizeof(dtunit));
81 std::string cur=MEDLoaderBase::buildStringFromFortran(nommaa,sizeof(nommaa));
91 std::ostringstream oss;
92 oss << "No such meshname (" << mname << ") in file ! Must be in : ";
93 std::copy(ms.begin(),ms.end(),std::ostream_iterator<std::string>(oss,", "));
94 throw INTERP_KERNEL::Exception(oss.str().c_str());
96 axType=TraduceAxisType(axistype);
99 case MED_UNSTRUCTURED_MESH:
100 meshType=UNSTRUCTURED;
102 case MED_STRUCTURED_MESH:
105 MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mname.c_str(),>));
108 case MED_CARTESIAN_GRID:
111 case MED_CURVILINEAR_GRID:
112 meshType=CURVE_LINEAR;
114 case MED_POLAR_GRID:// this is not a bug. A MED file POLAR_GRID is deal by CARTESIAN MEDLoader
118 throw INTERP_KERNEL::Exception("MEDFileMeshL2::getMeshIdFromName : unrecognized structured mesh type ! Supported are :\n - cartesian\n - curve linear\n");
123 throw INTERP_KERNEL::Exception("MEDFileMeshL2::getMeshIdFromName : unrecognized mesh type !");
127 MEDFILESAFECALLERRD0(MEDmeshComputationStepInfo,(fid,mname.c_str(),1,&numdt,&numit,&dtt));
132 double MEDFileMeshL2::CheckMeshTimeStep(med_idt fid, const std::string& mName, int nstep, int dt, int it)
137 std::vector< std::pair<int,int> > p(nstep);
138 for(int i=0;i<nstep;i++)
140 MEDFILESAFECALLERRD0(MEDmeshComputationStepInfo,(fid,mName.c_str(),i+1,&numdt,&numit,&dtt));
141 p[i]=std::make_pair(numdt,numit);
142 found=(numdt==dt) && (numit==numit);
146 std::ostringstream oss; oss << "No such iteration=" << dt << ",order=" << it << " numbers found for mesh '" << mName << "' ! ";
147 oss << "Possibilities are : ";
148 for(int i=0;i<nstep;i++)
149 oss << "(" << p[i].first << "," << p[i].second << "), ";
150 throw INTERP_KERNEL::Exception(oss.str().c_str());
156 * non static and non const method because _description, _dt_unit... are set in this method.
158 std::vector<std::string> MEDFileMeshL2::getAxisInfoOnMesh(med_idt fid, int mId, const std::string& mName, ParaMEDMEM::MEDCouplingMeshType& meshType, ParaMEDMEM::MEDCouplingAxisType& axType, int& nstep, int& Mdim)
160 med_mesh_type type_maillage;
162 med_sorting_type stype;
163 med_axis_type axistype;
164 int naxis(MEDmeshnAxis(fid,mId));
165 INTERP_KERNEL::AutoPtr<char> nameTmp=MEDLoaderBase::buildEmptyString(MED_NAME_SIZE);
166 INTERP_KERNEL::AutoPtr<char> axisname=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
167 INTERP_KERNEL::AutoPtr<char> axisunit=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
168 INTERP_KERNEL::AutoPtr<char> univTmp=MEDLoaderBase::buildEmptyString(MED_LNAME_SIZE);
169 if(MEDmeshInfo(fid,mId,nameTmp,&spaceDim,&Mdim,&type_maillage,_description.getPointer(),_dt_unit.getPointer(),
170 &stype,&nstep,&axistype,axisname,axisunit)!=0)
171 throw INTERP_KERNEL::Exception("A problem has been detected when trying to get info on mesh !");
172 MEDmeshUniversalNameRd(fid,nameTmp,_univ_name.getPointer());// do not protect MEDFILESAFECALLERRD0 call : Thanks to fra.med.
173 axType=TraduceAxisType(axistype);
174 switch(type_maillage)
176 case MED_UNSTRUCTURED_MESH:
177 meshType=UNSTRUCTURED;
179 case MED_STRUCTURED_MESH:
182 MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mName.c_str(),>));
185 case MED_CARTESIAN_GRID:
188 case MED_CURVILINEAR_GRID:
189 meshType=CURVE_LINEAR;
191 case MED_POLAR_GRID:// this is not a bug. A MED file POLAR_GRID is deal by CARTESIAN MEDLoader
195 throw INTERP_KERNEL::Exception("MEDFileMeshL2::getAxisInfoOnMesh : unrecognized structured mesh type ! Supported are :\n - cartesian\n - curve linear\n");
200 throw INTERP_KERNEL::Exception("MEDFileMeshL2::getMeshIdFromName : unrecognized mesh type !");
203 std::vector<std::string> infosOnComp(naxis);
204 for(int i=0;i<naxis;i++)
206 std::string info=MEDLoaderBase::buildUnionUnit(((char *)axisname)+i*MED_SNAME_SIZE,MED_SNAME_SIZE,((char *)axisunit)+i*MED_SNAME_SIZE,MED_SNAME_SIZE);
212 void MEDFileMeshL2::ReadFamiliesAndGrps(med_idt fid, const std::string& meshName, std::map<std::string,int>& fams, std::map<std::string, std::vector<std::string> >& grps, MEDFileMeshReadSelector *mrs)
214 if(mrs && !(mrs->isCellFamilyFieldReading() || mrs->isNodeFamilyFieldReading()))
216 char nomfam[MED_NAME_SIZE+1];
218 int nfam=MEDnFamily(fid,meshName.c_str());
219 std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > > crudeFams(nfam);
220 for(int i=0;i<nfam;i++)
222 int ngro=MEDnFamilyGroup(fid,meshName.c_str(),i+1);
223 med_int natt=MEDnFamily23Attribute(fid,meshName.c_str(),i+1);
224 INTERP_KERNEL::AutoPtr<med_int> attide=new med_int[natt];
225 INTERP_KERNEL::AutoPtr<med_int> attval=new med_int[natt];
226 INTERP_KERNEL::AutoPtr<char> attdes=new char[MED_COMMENT_SIZE*natt+1];
227 INTERP_KERNEL::AutoPtr<char> gro=new char[MED_LNAME_SIZE*ngro+1];
228 MEDfamily23Info(fid,meshName.c_str(),i+1,nomfam,attide,attval,attdes,&numfam,gro);
229 std::string famName(MEDLoaderBase::buildStringFromFortran(nomfam,MED_NAME_SIZE));
230 std::vector<std::string> grps(ngro);
231 for(int j=0;j<ngro;j++)
232 grps[j]=MEDLoaderBase::buildStringFromFortran(gro+j*MED_LNAME_SIZE,MED_LNAME_SIZE);
233 crudeFams[i]=std::pair<std::string,std::pair<int,std::vector<std::string> > >(famName,std::pair<int,std::vector<std::string> >(numfam,grps));
235 RenameFamiliesFromFileToMemInternal(crudeFams);
236 for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::const_iterator it0=crudeFams.begin();it0!=crudeFams.end();it0++)
238 fams[(*it0).first]=(*it0).second.first;
239 for(std::vector<std::string>::const_iterator it1=(*it0).second.second.begin();it1!=(*it0).second.second.end();it1++)
240 grps[*it1].push_back((*it0).first);
244 void MEDFileMeshL2::WriteFamiliesAndGrps(med_idt fid, const std::string& mname, const std::map<std::string,int>& fams, const std::map<std::string, std::vector<std::string> >& grps, int tooLongStrPol)
246 std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > > crudeFams(fams.size());
248 for(std::map<std::string,int>::const_iterator it=fams.begin();it!=fams.end();it++,ii++)
250 std::vector<std::string> grpsOfFam;
251 for(std::map<std::string, std::vector<std::string> >::const_iterator it1=grps.begin();it1!=grps.end();it1++)
253 if(std::find((*it1).second.begin(),(*it1).second.end(),(*it).first)!=(*it1).second.end())
254 grpsOfFam.push_back((*it1).first);
256 crudeFams[ii]=std::pair<std::string,std::pair<int,std::vector<std::string> > >((*it).first,std::pair<int,std::vector<std::string> >((*it).second,grpsOfFam));
258 RenameFamiliesFromMemToFileInternal(crudeFams);
259 for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::const_iterator it=crudeFams.begin();it!=crudeFams.end();it++)
261 int ngro((*it).second.second.size());
262 INTERP_KERNEL::AutoPtr<char> groName=MEDLoaderBase::buildEmptyString(MED_LNAME_SIZE*ngro);
264 for(std::vector<std::string>::const_iterator it2=(*it).second.second.begin();it2!=(*it).second.second.end();it2++,i++)
265 MEDLoaderBase::safeStrCpy2((*it2).c_str(),MED_LNAME_SIZE-1,groName+i*MED_LNAME_SIZE,tooLongStrPol);
266 INTERP_KERNEL::AutoPtr<char> famName=MEDLoaderBase::buildEmptyString(MED_NAME_SIZE);
267 MEDLoaderBase::safeStrCpy((*it).first.c_str(),MED_NAME_SIZE,famName,tooLongStrPol);
268 int ret=MEDfamilyCr(fid,mname.c_str(),famName,(*it).second.first,ngro,groName);
273 void MEDFileMeshL2::RenameFamiliesPatternInternal(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >& crudeFams, RenameFamiliesPatternFunc func)
276 std::vector<std::string> fams(crudeFams.size());
277 for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::const_iterator it=crudeFams.begin();it!=crudeFams.end();it++,ii++)
278 fams[ii]=(*it).first;
282 for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::iterator it=crudeFams.begin();it!=crudeFams.end();it++,ii++)
283 (*it).first=fams[ii];
287 * This method is dedicated to the killers that use a same family name to store different family ids. MED file API authorizes it.
288 * So this method renames families (if needed generaly not !) in order to have a discriminant name for families.
290 void MEDFileMeshL2::RenameFamiliesFromFileToMemInternal(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >& crudeFams)
292 RenameFamiliesPatternInternal(crudeFams,RenameFamiliesFromFileToMem);
295 bool MEDFileMeshL2::RenameFamiliesFromFileToMem(std::vector< std::string >& famNames)
297 std::map<std::string,int> m;
298 std::set<std::string> s;
299 for(std::vector< std::string >::const_iterator it=famNames.begin();it!=famNames.end();it++)
301 if(s.find(*it)!=s.end())
306 return false;// the general case !
307 for(std::vector< std::string >::iterator it=famNames.begin();it!=famNames.end();it++)
309 std::map<std::string,int>::iterator it2(m.find(*it));
312 std::ostringstream oss; oss << *it << ZE_SEP_FOR_FAMILY_KILLERS << std::setfill('0') << std::setw(ZE_SEP2_FOR_FAMILY_KILLERS) << (*it2).second++;
320 * This method is dedicated to the killers that use a same family name to store different family ids. MED file API authorizes it.
321 * So this method renames families (if needed generaly not !) in order to have a discriminant name for families.
323 void MEDFileMeshL2::RenameFamiliesFromMemToFileInternal(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >& crudeFams)
325 RenameFamiliesPatternInternal(crudeFams,RenameFamiliesFromMemToFile);
328 bool MEDFileMeshL2::RenameFamiliesFromMemToFile(std::vector< std::string >& famNames)
330 bool isSmthingStrange(false);
331 for(std::vector< std::string >::const_iterator it=famNames.begin();it!=famNames.end();it++)
333 std::size_t found((*it).find(ZE_SEP_FOR_FAMILY_KILLERS));
334 if(found!=std::string::npos)
335 isSmthingStrange=true;
337 if(!isSmthingStrange)
340 std::map< std::string, std::vector<std::string> > m;
341 for(std::vector< std::string >::const_iterator it=famNames.begin();it!=famNames.end();it++)
343 std::size_t found((*it).find(ZE_SEP_FOR_FAMILY_KILLERS));
344 if(found!=std::string::npos && found>=1)
346 std::string s1((*it).substr(found+sizeof(ZE_SEP_FOR_FAMILY_KILLERS)-1));
347 if(s1.size()!=ZE_SEP2_FOR_FAMILY_KILLERS)
350 std::istringstream iss(s1);
352 bool isOK((iss.rdstate() & ( std::istream::failbit | std::istream::eofbit)) == std::istream::eofbit);
355 std::string s0((*it).substr(0,found));
356 m[s0].push_back(*it);
363 std::map<std::string,std::string> zeMap;
364 for(std::map< std::string, std::vector<std::string> >::const_iterator it=m.begin();it!=m.end();it++)
366 if((*it).second.size()==1)
368 for(std::vector<std::string>::const_iterator it1=(*it).second.begin();it1!=(*it).second.end();it1++)
369 zeMap[*it1]=(*it).first;
374 for(std::vector< std::string >::iterator it=famNames.begin();it!=famNames.end();it++)
376 std::map<std::string,std::string>::iterator it1(zeMap.find(*it));
383 ParaMEDMEM::MEDCouplingAxisType MEDFileMeshL2::TraduceAxisType(med_axis_type at)
389 case MED_CYLINDRICAL:
393 case MED_UNDEF_AXIS_TYPE:
396 throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisType : unrecognized axis type !");
400 ParaMEDMEM::MEDCouplingAxisType MEDFileMeshL2::TraduceAxisTypeStruct(med_grid_type gt)
404 case MED_CARTESIAN_GRID:
409 throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisTypeStruct : only Cartesian and Cylindrical supported by MED file !");
413 med_axis_type MEDFileMeshL2::TraduceAxisTypeRev(ParaMEDMEM::MEDCouplingAxisType at)
418 return MED_CARTESIAN;
420 return MED_CYLINDRICAL;
422 return MED_SPHERICAL;
424 throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisTypeRev : unrecognized axis type !");
428 med_grid_type MEDFileMeshL2::TraduceAxisTypeRevStruct(ParaMEDMEM::MEDCouplingAxisType at)
433 return MED_CARTESIAN_GRID;
435 return MED_POLAR_GRID;
437 throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisTypeRevStruct : only Cartesian and Cylindrical supported by MED file !");
441 MEDFileUMeshL2::MEDFileUMeshL2()
445 std::vector<std::string> MEDFileUMeshL2::loadCommonPart(med_idt fid, int mId, const std::string& mName, int dt, int it, int& Mdim)
448 _name.set(mName.c_str());
450 ParaMEDMEM::MEDCouplingMeshType meshType;
451 ParaMEDMEM::MEDCouplingAxisType dummy3;
452 std::vector<std::string> ret(getAxisInfoOnMesh(fid,mId,mName.c_str(),meshType,dummy3,nstep,Mdim));
456 return std::vector<std::string>();
458 if(meshType!=UNSTRUCTURED)
459 throw INTERP_KERNEL::Exception("Invalid mesh type ! You are expected an unstructured one whereas in file it is not an unstructured !");
460 _time=CheckMeshTimeStep(fid,mName,nstep,dt,it);
466 void MEDFileUMeshL2::loadAll(med_idt fid, int mId, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
469 std::vector<std::string> infosOnComp(loadCommonPart(fid,mId,mName,dt,it,Mdim));
472 loadConnectivity(fid,Mdim,mName,dt,it,mrs);//to improve check (dt,it) coherency
473 loadCoords(fid,mId,infosOnComp,mName,dt,it);
476 void MEDFileUMeshL2::loadPart(med_idt fid, int mId, const std::string& mName, const std::vector<INTERP_KERNEL::NormalizedCellType>& types, const std::vector<int>& slicPerTyp, int dt, int it, MEDFileMeshReadSelector *mrs)
479 std::vector<std::string> infosOnComp(loadCommonPart(fid,mId,mName,dt,it,Mdim));
482 loadPartOfConnectivity(fid,Mdim,mName,types,slicPerTyp,dt,it,mrs);
483 med_bool changement,transformation;
484 int nCoords(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation));
485 std::vector<bool> fetchedNodeIds(nCoords,false);
486 for(std::vector< std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> > >::const_iterator it0=_per_type_mesh.begin();it0!=_per_type_mesh.end();it0++)
487 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it1=(*it0).begin();it1!=(*it0).end();it1++)
488 (*it1)->getMesh()->computeNodeIdsAlg(fetchedNodeIds);
489 int nMin(std::distance(fetchedNodeIds.begin(),std::find(fetchedNodeIds.begin(),fetchedNodeIds.end(),true)));
490 int nMax(std::distance(fetchedNodeIds.rbegin(),std::find(fetchedNodeIds.rbegin(),fetchedNodeIds.rend(),true)));
492 for(std::vector< std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> > >::const_iterator it0=_per_type_mesh.begin();it0!=_per_type_mesh.end();it0++)
493 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it1=(*it0).begin();it1!=(*it0).end();it1++)
494 (*it1)->getMesh()->renumberNodesWithOffsetInConn(-nMin);
495 loadPartCoords(fid,mId,infosOnComp,mName,dt,it,nMin,nMax);
498 void MEDFileUMeshL2::loadConnectivity(med_idt fid, int mdim, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
500 _per_type_mesh.resize(1);
501 _per_type_mesh[0].clear();
502 for(int j=0;j<MED_N_CELL_FIXED_GEO;j++)
504 MEDFileUMeshPerType *tmp(MEDFileUMeshPerType::New(fid,mName.c_str(),dt,it,mdim,typmai[j],typmai2[j],mrs));
506 _per_type_mesh[0].push_back(tmp);
511 void MEDFileUMeshL2::loadPartOfConnectivity(med_idt fid, int mdim, const std::string& mName, const std::vector<INTERP_KERNEL::NormalizedCellType>& types, const std::vector<int>& slicPerTyp, int dt, int it, MEDFileMeshReadSelector *mrs)
513 std::size_t nbOfTypes(types.size());
514 if(slicPerTyp.size()!=3*nbOfTypes)
515 throw INTERP_KERNEL::Exception("MEDFileUMeshL2::loadPartOfConnectivity : The size of slicPerTyp array is expected to be equal to 3 times size of array types !");
516 std::set<INTERP_KERNEL::NormalizedCellType> types2(types.begin(),types.end());
517 if(types2.size()!=nbOfTypes)
518 throw INTERP_KERNEL::Exception("MEDFileUMeshL2::loadPartOfConnectivity : the geometric types in types array must appear once !");
519 _per_type_mesh.resize(1);
520 _per_type_mesh[0].clear();
521 for(std::size_t ii=0;ii<nbOfTypes;ii++)
523 int strt(slicPerTyp[3*ii+0]),stp(slicPerTyp[3*ii+1]),step(slicPerTyp[3*ii+2]);
524 MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> tmp(MEDFileUMeshPerType::NewPart(fid,mName.c_str(),dt,it,mdim,types[ii],strt,stp,step,mrs));
525 _per_type_mesh[0].push_back(tmp);
530 void MEDFileUMeshL2::loadCoords(med_idt fid, int mId, const std::vector<std::string>& infosOnComp, const std::string& mName, int dt, int it)
532 int spaceDim((int)infosOnComp.size());
533 med_bool changement,transformation;
534 int nCoords(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation));
535 _coords=DataArrayDouble::New();
536 _coords->alloc(nCoords,spaceDim);
537 double *coordsPtr(_coords->getPointer());
539 MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateRd,(fid,mName.c_str(),dt,it,MED_FULL_INTERLACE,coordsPtr));
540 if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_FAMILY_NUMBER,MED_NODAL,&changement,&transformation)>0)
542 _fam_coords=DataArrayInt::New();
543 _fam_coords->alloc(nCoords,1);
544 MEDFILESAFECALLERRD0(MEDmeshEntityFamilyNumberRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_fam_coords->getPointer()));
548 if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NUMBER,MED_NODAL,&changement,&transformation)>0)
550 _num_coords=DataArrayInt::New();
551 _num_coords->alloc(nCoords,1);
552 MEDFILESAFECALLERRD0(MEDmeshEntityNumberRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_num_coords->getPointer()));
556 if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NAME,MED_NODAL,&changement,&transformation)>0)
558 _name_coords=DataArrayAsciiChar::New();
559 _name_coords->alloc(nCoords+1,MED_SNAME_SIZE);//not a bug to avoid the memory corruption due to last \0 at the end
560 MEDFILESAFECALLERRD0(MEDmeshEntityNameRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_name_coords->getPointer()));
561 _name_coords->reAlloc(nCoords);//not a bug to avoid the memory corruption due to last \0 at the end
565 for(int i=0;i<spaceDim;i++)
566 _coords->setInfoOnComponent(i,infosOnComp[i]);
569 void MEDFileUMeshL2::loadPartCoords(med_idt fid, int mId, const std::vector<std::string>& infosOnComp, const std::string& mName, int dt, int it, int nMin, int nMax)
571 med_bool changement,transformation;
572 int spaceDim((int)infosOnComp.size()),nCoords(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation));
573 _coords=DataArrayDouble::New();
574 int nbNodesToLoad(nMax-nMin);
575 _coords->alloc(nbNodesToLoad,spaceDim);
576 med_filter filter=MED_FILTER_INIT,filter2=MED_FILTER_INIT;
577 MEDfilterBlockOfEntityCr(fid,/*nentity*/nCoords,/*nvaluesperentity*/1,/*nconstituentpervalue*/spaceDim,
578 MED_ALL_CONSTITUENT,MED_FULL_INTERLACE,MED_COMPACT_STMODE,MED_NO_PROFILE,
579 /*start*/nMin+1,/*stride*/1,/*count*/1,/*blocksize*/nbNodesToLoad,
580 /*lastblocksize=useless because count=1*/0,&filter);
581 MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateAdvancedRd,(fid,mName.c_str(),dt,it,&filter,_coords->getPointer()));
582 _part_coords=PartDefinition::New(nMin,nMax,1);
583 MEDfilterClose(&filter);
584 MEDfilterBlockOfEntityCr(fid,nCoords,1,1,MED_ALL_CONSTITUENT,MED_FULL_INTERLACE,MED_COMPACT_STMODE,
585 MED_NO_PROFILE,nMin+1,1,1,nbNodesToLoad,0,&filter2);
586 if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_FAMILY_NUMBER,MED_NODAL,&changement,&transformation)>0)
588 _fam_coords=DataArrayInt::New();
589 _fam_coords->alloc(nbNodesToLoad,1);
590 MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_FAMILY_NUMBER,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_fam_coords->getPointer()));
594 if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NUMBER,MED_NODAL,&changement,&transformation)>0)
596 _num_coords=DataArrayInt::New();
597 _num_coords->alloc(nbNodesToLoad,1);
598 MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_NUMBER,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_num_coords->getPointer()));
602 if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NAME,MED_NODAL,&changement,&transformation)>0)
604 _name_coords=DataArrayAsciiChar::New();
605 _name_coords->alloc(nbNodesToLoad+1,MED_SNAME_SIZE);//not a bug to avoid the memory corruption due to last \0 at the end
606 MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_NAME,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_name_coords->getPointer()));
607 _name_coords->reAlloc(nbNodesToLoad);//not a bug to avoid the memory corruption due to last \0 at the end
611 MEDfilterClose(&filter2);
612 _coords->setInfoOnComponents(infosOnComp);
615 void MEDFileUMeshL2::sortTypes()
618 std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> > tmp(_per_type_mesh[0]);
619 _per_type_mesh.clear();
620 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it=tmp.begin();it!=tmp.end();it++)
621 mdims.insert((*it)->getDim());
624 int mdim=*mdims.rbegin();
625 _per_type_mesh.resize(mdim+1);
626 for(int dim=mdim+1;dim!=0;dim--)
628 std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >& elt=_per_type_mesh[mdim+1-dim];
629 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it=tmp.begin();it!=tmp.end();it++)
630 if((*it)->getDim()==dim-1)
633 // suppression of contiguous empty levels at the end of _per_type_mesh.
634 int nbOfUselessLev=0;
636 for(std::vector< std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> > >::reverse_iterator it2=_per_type_mesh.rbegin();it2!=_per_type_mesh.rend();it2++)
638 if((*it2).empty() && isFirst)
645 _per_type_mesh.resize(_per_type_mesh.size()-nbOfUselessLev);
648 void MEDFileUMeshL2::WriteCoords(med_idt fid, const std::string& mname, int dt, int it, double time, const DataArrayDouble *coords, const DataArrayInt *famCoords, const DataArrayInt *numCoords, const DataArrayAsciiChar *nameCoords)
652 MEDFILESAFECALLERWR0(MEDmeshNodeCoordinateWr,(fid,mname.c_str(),dt,it,time,MED_FULL_INTERLACE,coords->getNumberOfTuples(),coords->getConstPointer()));
654 MEDFILESAFECALLERWR0(MEDmeshEntityFamilyNumberWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,famCoords->getNumberOfTuples(),famCoords->getConstPointer()));
656 MEDFILESAFECALLERWR0(MEDmeshEntityNumberWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,numCoords->getNumberOfTuples(),numCoords->getConstPointer()));
659 if(nameCoords->getNumberOfComponents()!=MED_SNAME_SIZE)
661 std::ostringstream oss; oss << " MEDFileUMeshL2::WriteCoords : expected a name field on nodes with number of components set to " << MED_SNAME_SIZE;
662 oss << " ! The array has " << nameCoords->getNumberOfComponents() << " components !";
663 throw INTERP_KERNEL::Exception(oss.str().c_str());
665 MEDFILESAFECALLERWR0(MEDmeshEntityNameWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,nameCoords->getNumberOfTuples(),nameCoords->getConstPointer()));
669 bool MEDFileUMeshL2::isFamDefinedOnLev(int levId) const
671 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
672 if((*it)->getFam()==0)
677 bool MEDFileUMeshL2::isNumDefinedOnLev(int levId) const
679 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
680 if((*it)->getNum()==0)
685 bool MEDFileUMeshL2::isNamesDefinedOnLev(int levId) const
687 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
688 if((*it)->getNames()==0)
693 MEDFileCMeshL2::MEDFileCMeshL2():_ax_type(AX_CART)
697 void MEDFileCMeshL2::loadAll(med_idt fid, int mId, const std::string& mName, int dt, int it)
699 _name.set(mName.c_str());
702 ParaMEDMEM::MEDCouplingMeshType meshType;
703 ParaMEDMEM::MEDCouplingAxisType dummy3;
704 std::vector<std::string> infosOnComp=getAxisInfoOnMesh(fid,mId,mName.c_str(),meshType,dummy3,nstep,Mdim);
705 if(meshType!=CARTESIAN)
706 throw INTERP_KERNEL::Exception("Invalid mesh type ! You are expected a structured one whereas in file it is not a structured !");
707 _time=CheckMeshTimeStep(fid,mName,nstep,dt,it);
711 med_grid_type gridtype;
712 MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mName.c_str(),&gridtype));
713 if(gridtype!=MED_CARTESIAN_GRID && gridtype!=MED_POLAR_GRID)
714 throw INTERP_KERNEL::Exception("Invalid rectilinear mesh ! Only cartesian and polar are supported !");
715 _ax_type=TraduceAxisTypeStruct(gridtype);
716 _cmesh=MEDCouplingCMesh::New();
717 for(int i=0;i<Mdim;i++)
719 med_data_type dataTypeReq=GetDataTypeCorrespondingToSpaceId(i);
720 med_bool chgt=MED_FALSE,trsf=MED_FALSE;
721 int nbOfElt(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,dataTypeReq,MED_NO_CMODE,&chgt,&trsf));
722 MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> da=DataArrayDouble::New();
723 da->alloc(nbOfElt,1);
724 da->setInfoOnComponent(0,infosOnComp[i]);
725 MEDFILESAFECALLERRD0(MEDmeshGridIndexCoordinateRd,(fid,mName.c_str(),dt,it,i+1,da->getPointer()));
726 _cmesh->setCoordsAt(i,da);
730 med_data_type MEDFileCMeshL2::GetDataTypeCorrespondingToSpaceId(int id)
735 return MED_COORDINATE_AXIS1;
737 return MED_COORDINATE_AXIS2;
739 return MED_COORDINATE_AXIS3;
741 throw INTERP_KERNEL::Exception("Invalid meshdim detected in Cartesian Grid !");
745 MEDFileCLMeshL2::MEDFileCLMeshL2()
749 void MEDFileCLMeshL2::loadAll(med_idt fid, int mId, const std::string& mName, int dt, int it)
751 _name.set(mName.c_str());
754 ParaMEDMEM::MEDCouplingMeshType meshType;
755 ParaMEDMEM::MEDCouplingAxisType dummy3;
756 std::vector<std::string> infosOnComp=getAxisInfoOnMesh(fid,mId,mName,meshType,dummy3,nstep,Mdim);
757 if(meshType!=CURVE_LINEAR)
758 throw INTERP_KERNEL::Exception("Invalid mesh type ! You are expected a structured one whereas in file it is not a structured !");
759 _time=CheckMeshTimeStep(fid,mName,nstep,dt,it);
763 _clmesh=MEDCouplingCurveLinearMesh::New();
764 INTERP_KERNEL::AutoPtr<int> stGrid=new int[Mdim];
765 MEDFILESAFECALLERRD0(MEDmeshGridStructRd,(fid,mName.c_str(),dt,it,stGrid));
766 _clmesh->setNodeGridStructure(stGrid,((int *)stGrid)+Mdim);
767 med_bool chgt=MED_FALSE,trsf=MED_FALSE;
768 int nbNodes(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&chgt,&trsf));
769 MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> da=DataArrayDouble::New();
770 da->alloc(nbNodes,infosOnComp.size());
771 da->setInfoOnComponents(infosOnComp);
772 MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateRd,(fid,mName.c_str(),dt,it,MED_FULL_INTERLACE,da->getPointer()));
773 _clmesh->setCoords(da);
776 MEDFileUMeshPermCompute::MEDFileUMeshPermCompute(const MEDFileUMeshSplitL1* st):_st(st),_mpt_time(0),_num_time(0)
781 * Warning it returns an instance to deallocate !!!!
783 MEDFileUMeshPermCompute::operator MEDCouplingUMesh *() const
785 _st->_num->updateTime();
786 if((MEDCouplingUMesh *)_m==0)
789 _m=static_cast<MEDCouplingUMesh *>(_st->_m_by_types.getUmesh()->deepCpy());
790 _m->renumberCells(_st->_num->getConstPointer(),true);
795 if(_mpt_time==_st->_m_by_types.getTimeOfThis() && _num_time==_st->_num->getTimeOfThis())
800 _m=static_cast<MEDCouplingUMesh *>(_st->_m_by_types.getUmesh()->deepCpy());
801 _m->renumberCells(_st->_num->getConstPointer(),true);
807 void MEDFileUMeshPermCompute::operator=(MEDCouplingUMesh *m)
812 void MEDFileUMeshPermCompute::updateTime() const
814 _mpt_time=_st->_m_by_types.getTimeOfThis();
815 _num_time=_st->_num->getTimeOfThis();
818 std::vector<const BigMemoryObject *> MEDFileUMeshPermCompute::getDirectChildrenWithNull() const
820 std::vector<const BigMemoryObject *> ret;
821 ret.push_back((const MEDCouplingUMesh *)_m);
825 std::size_t MEDFileUMeshPermCompute::getHeapMemorySizeWithoutChildren() const
827 return sizeof(MEDFileUMeshPermCompute);
830 MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(const MEDFileUMeshSplitL1& other):RefCountObject(other),_m_by_types(other._m_by_types),_fam(other._fam),_num(other._num),_names(other._names),_rev_num(other._rev_num),_m(this)
834 MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(const MEDFileUMeshL2& l2, const std::string& mName, int id):_m(this)
836 const std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >& v=l2.getLev(id);
840 std::vector<const MEDCoupling1GTUMesh *> ms(sz);
841 std::vector<const DataArrayInt *> fams(sz),nums(sz);
842 std::vector<const DataArrayChar *> names(sz);
843 std::vector<const PartDefinition *> pds(sz);
844 for(int i=0;i<sz;i++)
846 MEDCoupling1GTUMesh *elt(v[i]->getMesh());
847 MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> tmp2=l2.getCoords();
848 elt->setCoords(tmp2);
850 pds[i]=v[i]->getPartDef();
852 _m_by_types.assignParts(ms);
853 _m_by_types.assignDefParts(pds);
854 if(l2.isFamDefinedOnLev(id))
856 for(int i=0;i<sz;i++)
857 fams[i]=v[i]->getFam();
859 _fam=DataArrayInt::Aggregate(fams);
863 _fam=const_cast<DataArrayInt *>(fams[0]);
866 if(l2.isNumDefinedOnLev(id))
868 for(int i=0;i<sz;i++)
869 nums[i]=v[i]->getNum();
871 _num=DataArrayInt::Aggregate(nums);
875 _num=const_cast<DataArrayInt *>(nums[0]);
879 if(l2.isNamesDefinedOnLev(id))
881 for(int i=0;i<sz;i++)
882 names[i]=v[i]->getNames();
883 _names=dynamic_cast<DataArrayAsciiChar *>(DataArrayChar::Aggregate(names));
887 MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(MEDCoupling1GTUMesh *m):_m(this)
889 std::vector< const MEDCoupling1GTUMesh * > v(1);
894 MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(MEDCouplingUMesh *m):_m(this)
899 MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(MEDCouplingUMesh *m, bool newOrOld):_m(this)
901 assignMesh(m,newOrOld);
904 void MEDFileUMeshSplitL1::setName(const std::string& name)
906 _m_by_types.setName(name);
909 std::size_t MEDFileUMeshSplitL1::getHeapMemorySizeWithoutChildren() const
914 std::vector<const BigMemoryObject *> MEDFileUMeshSplitL1::getDirectChildrenWithNull() const
916 std::vector<const BigMemoryObject *> ret;
917 ret.push_back(&_m_by_types);
919 ret.push_back((const DataArrayInt*)_fam);
920 ret.push_back((const DataArrayInt*)_num);
921 ret.push_back((const DataArrayInt*)_rev_num);
922 ret.push_back((const DataArrayAsciiChar*)_names);
926 MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::shallowCpyUsingCoords(DataArrayDouble *coords) const
928 MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> ret(new MEDFileUMeshSplitL1(*this));
929 ret->_m_by_types.shallowCpyMeshes();
930 ret->_m_by_types.setCoords(coords);
934 MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::deepCpy(DataArrayDouble *coords) const
936 MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> ret(new MEDFileUMeshSplitL1(*this));
937 ret->_m_by_types=_m_by_types.deepCpy(coords);
938 if((const DataArrayInt *)_fam)
939 ret->_fam=_fam->deepCpy();
940 if((const DataArrayInt *)_num)
941 ret->_num=_num->deepCpy();
942 if((const DataArrayInt *)_rev_num)
943 ret->_rev_num=_rev_num->deepCpy();
944 if((const DataArrayAsciiChar *)_names)
945 ret->_names=_names->deepCpy();
949 bool MEDFileUMeshSplitL1::isEqual(const MEDFileUMeshSplitL1 *other, double eps, std::string& what) const
951 if(!_m_by_types.isEqual(other->_m_by_types,eps,what))
953 const DataArrayInt *d1=_fam;
954 const DataArrayInt *d2=other->_fam;
955 if((d1==0 && d2!=0) || (d1!=0 && d2==0))
957 what="Presence of family arr in one sublevel and not in other!";
961 if(!d1->isEqual(*d2))
963 what="family arr at a sublevel are not deeply equal !";
968 if((d1==0 && d2!=0) || (d1!=0 && d2==0))
970 what="Presence of cell numbering arr in one sublevel and not in other!";
974 if(!d1->isEqual(*d2))
976 what="Numbering cell arr at a sublevel are not deeply equal !";
979 const DataArrayAsciiChar *e1=_names;
980 const DataArrayAsciiChar *e2=other->_names;
981 if((e1==0 && e2!=0) || (e1!=0 && e2==0))
983 what="Presence of cell names arr in one sublevel and not in other!";
987 if(!e1->isEqual(*e2))
989 what="Name cell arr at a sublevel are not deeply equal !";
995 void MEDFileUMeshSplitL1::synchronizeTinyInfo(const MEDFileMesh& master) const
997 _m_by_types.synchronizeTinyInfo(master);
1000 void MEDFileUMeshSplitL1::clearNonDiscrAttributes() const
1002 _m_by_types.clearNonDiscrAttributes();
1005 void MEDFileUMeshSplitL1::ClearNonDiscrAttributes(const MEDCouplingMesh *tmp)
1009 (const_cast<MEDCouplingMesh *>(tmp))->setName("");
1010 (const_cast<MEDCouplingMesh *>(tmp))->setDescription("");
1011 (const_cast<MEDCouplingMesh *>(tmp))->setTime(0.,-1,-1);
1012 (const_cast<MEDCouplingMesh *>(tmp))->setTimeUnit("");
1015 void MEDFileUMeshSplitL1::setCoords(DataArrayDouble *coords)
1017 _m_by_types.setCoords(coords);
1020 void MEDFileUMeshSplitL1::assignMesh(MEDCouplingUMesh *m, bool newOrOld)
1026 _m_by_types.assignUMesh(dynamic_cast<MEDCouplingUMesh *>(m->deepCpy()));
1027 MEDCouplingAutoRefCountObjectPtr<DataArrayInt> da=_m_by_types.getUmesh()->getRenumArrForConsecutiveCellTypesSpec(typmai2,typmai2+MED_N_CELL_FIXED_GEO);
1028 if(!da->isIdentity())
1030 _num=da->invertArrayO2N2N2O(m->getNumberOfCells());
1033 _m_by_types.getUmesh()->renumberCells(da->getConstPointer(),false);
1038 if(!m->checkConsecutiveCellTypesAndOrder(typmai2,typmai2+MED_N_CELL_FIXED_GEO))
1039 throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::assignMesh(): the mesh does not follow the MED file numbering convention! Invoke sortCellsInMEDFileFrmt() first!");
1041 _m_by_types.assignUMesh(m);
1046 void MEDFileUMeshSplitL1::forceComputationOfParts() const
1048 _m_by_types.forceComputationOfPartsFromUMesh();
1051 void MEDFileUMeshSplitL1::assignParts(const std::vector< const MEDCoupling1GTUMesh * >& mParts)
1053 _m_by_types.assignParts(mParts);
1057 MEDFileUMeshSplitL1::MEDFileUMeshSplitL1():_m(this)
1061 void MEDFileUMeshSplitL1::assignCommonPart()
1063 _fam=DataArrayInt::New();
1064 _fam->alloc(_m_by_types.getSize(),1);
1065 _fam->fillWithValue(0);
1068 bool MEDFileUMeshSplitL1::empty() const
1070 return _m_by_types.empty();
1073 bool MEDFileUMeshSplitL1::presenceOfOneFams(const std::vector<int>& ids) const
1075 const DataArrayInt *fam=_fam;
1078 return fam->presenceOfValue(ids);
1081 int MEDFileUMeshSplitL1::getMeshDimension() const
1083 return _m_by_types.getMeshDimension();
1086 void MEDFileUMeshSplitL1::simpleRepr(std::ostream& oss) const
1088 std::vector<int> code=_m_by_types.getDistributionOfTypes();
1089 int nbOfTypes=code.size()/3;
1090 for(int i=0;i<nbOfTypes;i++)
1092 INTERP_KERNEL::NormalizedCellType typ=(INTERP_KERNEL::NormalizedCellType) code[3*i];
1093 oss << " - Number of cells with type " << INTERP_KERNEL::CellModel::GetCellModel(typ).getRepr() << " : " << code[3*i+1] << std::endl;
1097 int MEDFileUMeshSplitL1::getSize() const
1099 return _m_by_types.getSize();
1102 MEDCouplingUMesh *MEDFileUMeshSplitL1::getFamilyPart(const int *idsBg, const int *idsEnd, bool renum) const
1104 MEDCouplingAutoRefCountObjectPtr<DataArrayInt> eltsToKeep=_fam->getIdsEqualList(idsBg,idsEnd);
1105 MEDCouplingUMesh *m=(MEDCouplingUMesh *)_m_by_types.getUmesh()->buildPartOfMySelf(eltsToKeep->getConstPointer(),eltsToKeep->getConstPointer()+eltsToKeep->getNumberOfTuples(),true);
1107 return renumIfNeeded(m,eltsToKeep->getConstPointer());
1111 DataArrayInt *MEDFileUMeshSplitL1::getFamilyPartArr(const int *idsBg, const int *idsEnd, bool renum) const
1113 MEDCouplingAutoRefCountObjectPtr<DataArrayInt> da=_fam->getIdsEqualList(idsBg,idsEnd);
1115 return renumIfNeededArr(da);
1119 std::vector<INTERP_KERNEL::NormalizedCellType> MEDFileUMeshSplitL1::getGeoTypes() const
1121 return _m_by_types.getGeoTypes();
1124 int MEDFileUMeshSplitL1::getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType ct) const
1126 return _m_by_types.getNumberOfCellsWithType(ct);
1129 MEDCouplingUMesh *MEDFileUMeshSplitL1::getWholeMesh(bool renum) const
1131 MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> tmp;
1132 if(renum && ((const DataArrayInt *)_num))
1135 { tmp=_m_by_types.getUmesh(); if(tmp) tmp->incrRef(); }
1139 int MEDFileUMeshSplitL1::getNumberOfCells() const
1141 return _m_by_types.getNumberOfCells();
1144 DataArrayInt *MEDFileUMeshSplitL1::extractFamilyFieldOnGeoType(INTERP_KERNEL::NormalizedCellType gt) const
1146 const DataArrayInt *fam(_fam);
1149 int start(0),stop(0);
1150 _m_by_types.getStartStopOfGeoTypeWithoutComputation(gt,start,stop);
1151 return fam->selectByTupleId2(start,stop,1);
1154 DataArrayInt *MEDFileUMeshSplitL1::extractNumberFieldOnGeoType(INTERP_KERNEL::NormalizedCellType gt) const
1156 const DataArrayInt *num(_num);
1159 int start(0),stop(0);
1160 _m_by_types.getStartStopOfGeoTypeWithoutComputation(gt,start,stop);
1161 return num->selectByTupleId2(start,stop,1);
1164 DataArrayInt *MEDFileUMeshSplitL1::getOrCreateAndGetFamilyField()
1166 if((DataArrayInt *)_fam)
1168 int nbOfTuples=_m_by_types.getSize();
1169 _fam=DataArrayInt::New(); _fam->alloc(nbOfTuples,1); _fam->fillWithZero();
1173 const DataArrayInt *MEDFileUMeshSplitL1::getFamilyField() const
1178 const DataArrayInt *MEDFileUMeshSplitL1::getNumberField() const
1183 const DataArrayInt *MEDFileUMeshSplitL1::getRevNumberField() const
1188 const DataArrayAsciiChar *MEDFileUMeshSplitL1::getNameField() const
1193 const PartDefinition *MEDFileUMeshSplitL1::getPartDef(INTERP_KERNEL::NormalizedCellType gt) const
1195 return _m_by_types.getPartDefOfWithoutComputation(gt);
1198 void MEDFileUMeshSplitL1::eraseFamilyField()
1200 _fam->fillWithZero();
1204 * This method ignores _m and _m_by_types.
1206 void MEDFileUMeshSplitL1::setGroupsFromScratch(const std::vector<const MEDCouplingUMesh *>& ms, std::map<std::string,int>& familyIds,
1207 std::map<std::string, std::vector<std::string> >& groups)
1209 std::vector< DataArrayInt * > corr;
1210 _m=MEDCouplingUMesh::FuseUMeshesOnSameCoords(ms,0,corr);
1211 std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> > corrMSafe(corr.begin(),corr.end());
1212 std::vector< std::vector<int> > fidsOfGroups;
1213 std::vector< const DataArrayInt * > corr2(corr.begin(),corr.end());
1214 _fam=DataArrayInt::MakePartition(corr2,((MEDCouplingUMesh *)_m)->getNumberOfCells(),fidsOfGroups);
1215 int nbOfCells=((MEDCouplingUMesh *)_m)->getNumberOfCells();
1216 std::map<int,std::string> newfams;
1217 std::map<int,int> famIdTrad;
1218 TraduceFamilyNumber(fidsOfGroups,familyIds,famIdTrad,newfams);
1219 int *w=_fam->getPointer();
1220 for(int i=0;i<nbOfCells;i++,w++)
1224 void MEDFileUMeshSplitL1::write(med_idt fid, const std::string& mName, int mdim) const
1226 std::vector<MEDCoupling1GTUMesh *> ms(_m_by_types.getParts());
1228 for(std::vector<MEDCoupling1GTUMesh *>::const_iterator it=ms.begin();it!=ms.end();it++)
1230 int nbCells=(*it)->getNumberOfCells();
1231 int end=start+nbCells;
1232 MEDCouplingAutoRefCountObjectPtr<DataArrayInt> fam,num;
1233 MEDCouplingAutoRefCountObjectPtr<DataArrayAsciiChar> names;
1234 if((const DataArrayInt *)_fam)
1235 fam=_fam->substr(start,end);
1236 if((const DataArrayInt *)_num)
1237 num=_num->substr(start,end);
1238 if((const DataArrayAsciiChar *)_names)
1239 names=static_cast<DataArrayAsciiChar *>(_names->substr(start,end));
1240 MEDFileUMeshPerType::Write(fid,mName,mdim,(*it),fam,num,names);
1245 void MEDFileUMeshSplitL1::renumberNodesInConn(const int *newNodeNumbersO2N)
1247 _m_by_types.renumberNodesInConnWithoutComputation(newNodeNumbersO2N);
1250 void MEDFileUMeshSplitL1::serialize(std::vector<int>& tinyInt, std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> >& bigArraysI) const
1252 bigArraysI.push_back(_fam);
1253 bigArraysI.push_back(_num);
1254 _m_by_types.serialize(tinyInt,bigArraysI);
1257 void MEDFileUMeshSplitL1::unserialize(const std::string& name, DataArrayDouble *coo, std::vector<int>& tinyInt, std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> >& bigArraysI)
1259 _fam=bigArraysI.back(); bigArraysI.pop_back();
1260 _num=bigArraysI.back(); bigArraysI.pop_back();
1261 _m_by_types.unserialize(name,coo,tinyInt,bigArraysI);
1264 void MEDFileUMeshSplitL1::changeFamilyIdArr(int oldId, int newId)
1266 DataArrayInt *arr=_fam;
1268 arr->changeValue(oldId,newId);
1271 void MEDFileUMeshSplitL1::setFamilyArr(DataArrayInt *famArr)
1278 int sz(_m_by_types.getSize());
1279 famArr->checkNbOfTuplesAndComp(sz,1,"MEDFileUMeshSplitL1::setFamilyArr : Problem in size of Family arr ! ");
1284 DataArrayInt *MEDFileUMeshSplitL1::getFamilyField()
1289 void MEDFileUMeshSplitL1::setRenumArr(DataArrayInt *renumArr)
1297 int sz(_m_by_types.getSize());
1298 renumArr->checkNbOfTuplesAndComp(sz,1,"MEDFileUMeshSplitL1::setRenumArr : Problem in size of numbering arr ! ");
1299 renumArr->incrRef();
1304 void MEDFileUMeshSplitL1::setNameArr(DataArrayAsciiChar *nameArr)
1311 int sz(_m_by_types.getSize());
1312 nameArr->checkNbOfTuplesAndComp(sz,MED_SNAME_SIZE,"MEDFileUMeshSplitL1::setNameArr : Problem in size of name arr ! ");
1317 MEDCouplingUMesh *MEDFileUMeshSplitL1::Renumber2(const DataArrayInt *renum, MEDCouplingUMesh *m, const int *cellIds)
1322 m->renumberCells(renum->getConstPointer(),true);
1325 MEDCouplingAutoRefCountObjectPtr<DataArrayInt> locnum=renum->selectByTupleId(cellIds,cellIds+m->getNumberOfCells());
1326 m->renumberCells(locnum->getConstPointer(),true);
1331 MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::Unserialize(const std::string& name, DataArrayDouble *coo, std::vector<int>& tinyInt, std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> >& bigArraysI)
1333 MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> ret(new MEDFileUMeshSplitL1);
1334 ret->unserialize(name,coo,tinyInt,bigArraysI);
1338 MEDCouplingUMesh *MEDFileUMeshSplitL1::renumIfNeeded(MEDCouplingUMesh *m, const int *cellIds) const
1340 return Renumber2(_num,m,cellIds);
1343 DataArrayInt *MEDFileUMeshSplitL1::Renumber(const DataArrayInt *renum, const DataArrayInt *da)
1345 if((const DataArrayInt *)renum==0)
1348 return const_cast<DataArrayInt *>(da);
1350 return renum->selectByTupleId(da->getConstPointer(),da->getConstPointer()+da->getNumberOfTuples());
1353 DataArrayInt *MEDFileUMeshSplitL1::renumIfNeededArr(const DataArrayInt *da) const
1355 return Renumber(_num,da);
1358 std::vector<int> MEDFileUMeshSplitL1::GetNewFamiliesNumber(int nb, const std::map<std::string,int>& families)
1361 for(std::map<std::string,int>::const_iterator it=families.begin();it!=families.end();it++)
1362 id=std::max(id,(*it).second);
1365 std::vector<int> ret(nb);
1366 for(int i=1;i<=nb;i++)
1371 void MEDFileUMeshSplitL1::TraduceFamilyNumber(const std::vector< std::vector<int> >& fidsGrps, std::map<std::string,int>& familyIds,
1372 std::map<int,int>& famIdTrad, std::map<int,std::string>& newfams)
1374 std::set<int> allfids;
1378 void MEDFileUMeshSplitL1::computeRevNum() const
1381 int maxValue=_num->getMaxValue(pos);
1382 _rev_num=_num->invertArrayN2O2O2N(maxValue+1);
1387 MEDFileUMeshAggregateCompute::MEDFileUMeshAggregateCompute():_mp_time(0),_m_time(0)
1391 void MEDFileUMeshAggregateCompute::setName(const std::string& name)
1393 if(_m_time>=_mp_time)
1395 MEDCouplingUMesh *um(_m);
1399 if(_mp_time>=_m_time)
1401 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1403 MEDCoupling1GTUMesh *tmp(*it);
1410 void MEDFileUMeshAggregateCompute::assignParts(const std::vector< const MEDCoupling1GTUMesh * >& mParts)
1412 std::size_t sz(mParts.size());
1413 std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> > ret(sz);
1414 for(std::size_t i=0;i<sz;i++)
1416 const MEDCoupling1GTUMesh *elt(mParts[i]);
1418 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::assignParts : presence of null pointer !");
1419 ret[i]=const_cast<MEDCoupling1GTUMesh *>(elt); elt->incrRef();
1422 _part_def.clear(); _part_def.resize(sz);
1423 _mp_time=std::max(_mp_time,_m_time)+1;
1427 void MEDFileUMeshAggregateCompute::assignDefParts(const std::vector<const PartDefinition *>& partDefs)
1429 if(_mp_time<_m_time)
1430 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::assignDefParts : the parts require a computation !");
1431 std::size_t sz(partDefs.size());
1432 if(_part_def.size()!=partDefs.size() || _part_def.size()!=_m_parts.size())
1433 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::assignDefParts : sizes of vectors of part definition mismatch !");
1434 for(std::size_t i=0;i<sz;i++)
1436 const PartDefinition *elt(partDefs[i]);
1439 _part_def[i]=const_cast<PartDefinition*>(elt);
1443 void MEDFileUMeshAggregateCompute::assignUMesh(MEDCouplingUMesh *m)
1447 _m_time=std::max(_mp_time,_m_time)+1;
1450 MEDCouplingUMesh *MEDFileUMeshAggregateCompute::getUmesh() const
1452 if(_mp_time<=_m_time)
1454 std::vector< const MEDCoupling1GTUMesh *> mp(_m_parts.size());
1455 std::copy(_m_parts.begin(),_m_parts.end(),mp.begin());
1456 _m=MEDCoupling1GTUMesh::AggregateOnSameCoordsToUMesh(mp);
1457 _m_parts.clear();//to avoid memory peak !
1458 _m_time=_mp_time+1;//+1 is important ! That is to say that only _m is OK not _m_parts because cleared !
1462 int MEDFileUMeshAggregateCompute::getNumberOfCells() const
1464 if(_mp_time<=_m_time)
1465 return _m->getNumberOfCells();
1467 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1468 ret+=(*it)->getNumberOfCells();
1472 std::vector<INTERP_KERNEL::NormalizedCellType> MEDFileUMeshAggregateCompute::getGeoTypes() const
1474 if(_mp_time>=_m_time)
1476 std::size_t sz(_m_parts.size());
1477 std::vector<INTERP_KERNEL::NormalizedCellType> ret(sz);
1478 for(std::size_t i=0;i<sz;i++)
1479 ret[i]=_m_parts[i]->getCellModelEnum();
1483 return _m->getAllGeoTypesSorted();
1486 int MEDFileUMeshAggregateCompute::getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType ct) const
1488 if(_mp_time>=_m_time)
1490 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1492 const MEDCoupling1GTUMesh *elt(*it);
1493 if(elt && elt->getCellModelEnum()==ct)
1494 return elt->getNumberOfCells();
1499 return _m->getNumberOfCellsWithType(ct);
1502 std::vector<MEDCoupling1GTUMesh *> MEDFileUMeshAggregateCompute::retrievePartsWithoutComputation() const
1504 if(_mp_time<_m_time)
1505 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartsWithoutComputation : the parts require a computation !");
1507 std::vector<MEDCoupling1GTUMesh *> ret(_m_parts.size());
1509 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++,i++)
1511 const MEDCoupling1GTUMesh *elt(*it);
1512 ret[i]=const_cast<MEDCoupling1GTUMesh *>(elt);
1517 std::vector<MEDCoupling1GTUMesh *> MEDFileUMeshAggregateCompute::getParts() const
1519 if(_mp_time<_m_time)
1520 forceComputationOfPartsFromUMesh();
1521 return retrievePartsWithoutComputation();
1524 MEDCoupling1GTUMesh *MEDFileUMeshAggregateCompute::retrievePartWithoutComputation(INTERP_KERNEL::NormalizedCellType gt) const
1526 std::vector<MEDCoupling1GTUMesh *> v(retrievePartsWithoutComputation());
1527 std::size_t sz(v.size());
1528 for(std::size_t i=0;i<sz;i++)
1531 if(v[i]->getCellModelEnum()==gt)
1534 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartWithoutComputation : the geometric type is not existing !");
1537 void MEDFileUMeshAggregateCompute::getStartStopOfGeoTypeWithoutComputation(INTERP_KERNEL::NormalizedCellType gt, int& start, int& stop) const
1540 std::vector<MEDCoupling1GTUMesh *> v(retrievePartsWithoutComputation());
1541 std::size_t sz(v.size());
1542 for(std::size_t i=0;i<sz;i++)
1546 if(v[i]->getCellModelEnum()==gt)
1548 stop=start+v[i]->getNumberOfCells();
1552 start+=v[i]->getNumberOfCells();
1555 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getStartStopOfGeoTypeWithoutComputation : the geometric type is not existing !");
1558 void MEDFileUMeshAggregateCompute::renumberNodesInConnWithoutComputation(const int *newNodeNumbersO2N)
1560 if(_mp_time>_m_time)
1562 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1564 MEDCoupling1GTUMesh *m(*it);
1566 m->renumberNodesInConn(newNodeNumbersO2N);
1571 MEDCouplingUMesh *m(getUmesh());
1574 m->renumberNodesInConn(newNodeNumbersO2N);
1578 void MEDFileUMeshAggregateCompute::forceComputationOfPartsFromUMesh() const
1580 const MEDCouplingUMesh *m(_m);
1583 if(_m_parts.empty())
1584 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::forceComputationOfPartsFromUMesh : null UMesh !");
1586 return ;// no needs to compte parts they are already here !
1588 std::vector<MEDCouplingUMesh *> ms(m->splitByType());
1589 std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> > msMSafe(ms.begin(),ms.end());
1590 std::size_t sz(msMSafe.size());
1591 _m_parts.resize(sz);
1592 for(std::size_t i=0;i<sz;i++)
1593 _m_parts[i]=MEDCoupling1GTUMesh::New(ms[i]);
1595 _part_def.resize(_m_parts.size());
1596 _mp_time=std::max(_mp_time,_m_time);
1599 const PartDefinition *MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation(INTERP_KERNEL::NormalizedCellType gt) const
1601 if(_mp_time<_m_time)
1602 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation : the parts require a computation !");
1603 if(_m_parts.size()!=_part_def.size())
1604 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation : size of arrays are expected to be the same !");
1605 std::size_t sz(_m_parts.size());
1606 for(std::size_t i=0;i<sz;i++)
1608 const MEDCoupling1GTUMesh *mesh(_m_parts[i]);
1610 if(mesh->getCellModelEnum()==gt)
1611 return _part_def[i];
1613 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation : The input geo type is not existing in this !");
1616 void MEDFileUMeshAggregateCompute::serialize(std::vector<int>& tinyInt, std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> >& bigArraysI) const
1618 if(_mp_time<_m_time)
1619 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : the parts require a computation !");
1620 std::size_t sz(_m_parts.size());
1621 tinyInt.push_back((int)sz);
1622 for(std::size_t i=0;i<sz;i++)
1624 const MEDCoupling1GTUMesh *mesh(_m_parts[i]);
1626 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : one part is empty !");
1627 tinyInt.push_back(mesh->getCellModelEnum());
1628 const MEDCoupling1SGTUMesh *mesh1(dynamic_cast<const MEDCoupling1SGTUMesh *>(mesh));
1629 const MEDCoupling1DGTUMesh *mesh2(dynamic_cast<const MEDCoupling1DGTUMesh *>(mesh));
1632 DataArrayInt *elt(mesh1->getNodalConnectivity());
1635 MEDCouplingAutoRefCountObjectPtr<DataArrayInt> elt1(elt);
1636 bigArraysI.push_back(elt1);
1640 DataArrayInt *elt1(mesh2->getNodalConnectivity()),*elt2(mesh2->getNodalConnectivityIndex());
1645 MEDCouplingAutoRefCountObjectPtr<DataArrayInt> elt11(elt1),elt22(elt2);
1646 bigArraysI.push_back(elt11); bigArraysI.push_back(elt22);
1649 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : unrecognized single geo type mesh !");
1650 const PartDefinition *pd(_part_def[i]);
1652 tinyInt.push_back(-1);
1655 std::vector<int> tinyTmp;
1656 pd->serialize(tinyTmp,bigArraysI);
1657 tinyInt.push_back((int)tinyTmp.size());
1658 tinyInt.insert(tinyInt.end(),tinyTmp.begin(),tinyTmp.end());
1663 void MEDFileUMeshAggregateCompute::unserialize(const std::string& name, DataArrayDouble *coo, std::vector<int>& tinyInt, std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> >& bigArraysI)
1665 int nbParts(tinyInt.back()); tinyInt.pop_back();
1666 _part_def.clear(); _part_def.resize(nbParts);
1667 _m_parts.clear(); _m_parts.resize(nbParts);
1668 for(int i=0;i<nbParts;i++)
1670 INTERP_KERNEL::NormalizedCellType tp((INTERP_KERNEL::NormalizedCellType) tinyInt.back()); tinyInt.pop_back();
1671 MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> mesh(MEDCoupling1GTUMesh::New(name,tp));
1672 mesh->setCoords(coo);
1673 MEDCoupling1SGTUMesh *mesh1(dynamic_cast<MEDCoupling1SGTUMesh *>((MEDCoupling1GTUMesh *) mesh));
1674 MEDCoupling1DGTUMesh *mesh2(dynamic_cast<MEDCoupling1DGTUMesh *>((MEDCoupling1GTUMesh *) mesh));
1677 mesh1->setNodalConnectivity(bigArraysI.back()); bigArraysI.pop_back();
1681 MEDCouplingAutoRefCountObjectPtr<DataArrayInt> elt0,elt1;
1682 elt0=bigArraysI.back(); bigArraysI.pop_back();
1683 elt1=bigArraysI.back(); bigArraysI.pop_back();
1684 mesh2->setNodalConnectivity(elt0,elt1);
1687 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::unserialize : unrecognized single geo type mesh !");
1689 int pdid(tinyInt.back()); tinyInt.pop_back();
1691 _part_def[i]=PartDefinition::Unserialize(tinyInt,bigArraysI);
1692 _mp_time=std::max(_mp_time,_m_time)+1;
1697 * This method returns true if \a this is stored split by type false if stored in a merged unstructured mesh.
1699 bool MEDFileUMeshAggregateCompute::isStoredSplitByType() const
1701 return _mp_time>=_m_time;
1704 std::size_t MEDFileUMeshAggregateCompute::getTimeOfThis() const
1706 if(_mp_time>_m_time)
1707 return getTimeOfParts();
1708 if(_m_time>_mp_time)
1709 return getTimeOfUMesh();
1710 return std::max(getTimeOfParts(),getTimeOfUMesh());
1713 std::size_t MEDFileUMeshAggregateCompute::getTimeOfParts() const
1716 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1718 const MEDCoupling1GTUMesh *elt(*it);
1720 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getTimeOfParts : null obj in parts !");
1721 ret=std::max(ret,elt->getTimeOfThis());
1724 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getTimeOfParts : parts is empty !");
1728 std::size_t MEDFileUMeshAggregateCompute::getTimeOfUMesh() const
1730 const MEDCouplingUMesh *m(_m);
1732 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getTimeOfUMesh : unmesh is null !");
1733 return m->getTimeOfThis();
1736 std::size_t MEDFileUMeshAggregateCompute::getHeapMemorySizeWithoutChildren() const
1738 std::size_t ret(_m_parts.size()*sizeof(MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh>));
1742 std::vector<const BigMemoryObject *> MEDFileUMeshAggregateCompute::getDirectChildrenWithNull() const
1744 std::vector<const BigMemoryObject *> ret;
1745 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1746 ret.push_back((const MEDCoupling1GTUMesh *)*it);
1747 ret.push_back((const MEDCouplingUMesh *)_m);
1751 MEDFileUMeshAggregateCompute MEDFileUMeshAggregateCompute::deepCpy(DataArrayDouble *coords) const
1753 MEDFileUMeshAggregateCompute ret;
1754 ret._m_parts.resize(_m_parts.size());
1755 for(std::size_t i=0;i<_m_parts.size();i++)
1757 const MEDCoupling1GTUMesh *elt(_m_parts[i]);
1760 ret._m_parts[i]=static_cast<ParaMEDMEM::MEDCoupling1GTUMesh*>(elt->deepCpy());
1761 ret._m_parts[i]->setCoords(coords);
1764 ret._mp_time=_mp_time; ret._m_time=_m_time;
1765 if((const MEDCouplingUMesh *)_m)
1767 ret._m=static_cast<ParaMEDMEM::MEDCouplingUMesh*>(_m->deepCpy());
1768 ret._m->setCoords(coords);
1770 std::size_t sz(_part_def.size());
1771 ret._part_def.clear(); ret._part_def.resize(sz);
1772 for(std::size_t i=0;i<sz;i++)
1774 const PartDefinition *elt(_part_def[i]);
1776 ret._part_def[i]=elt->deepCpy();
1781 void MEDFileUMeshAggregateCompute::shallowCpyMeshes()
1783 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1785 const MEDCoupling1GTUMesh *elt(*it);
1788 MEDCouplingAutoRefCountObjectPtr<MEDCouplingMesh> elt2(elt->clone(false));
1789 *it=DynamicCastSafe<MEDCouplingMesh,MEDCoupling1GTUMesh>(elt2);
1792 const MEDCouplingUMesh *m(_m);
1797 bool MEDFileUMeshAggregateCompute::isEqual(const MEDFileUMeshAggregateCompute& other, double eps, std::string& what) const
1799 const MEDCouplingUMesh *m1(getUmesh());
1800 const MEDCouplingUMesh *m2(other.getUmesh());
1801 if((m1==0 && m2!=0) || (m1!=0 && m2==0))
1803 what="Presence of mesh in one sublevel and not in other!";
1809 if(!m1->isEqualIfNotWhy(m2,eps,what2))
1811 what=std::string("meshes at a sublevel are not deeply equal (")+what2+std::string(")!");
1815 std::size_t sz(_part_def.size());
1816 if(sz!=other._part_def.size())
1818 what=std::string("number of subdivision per geo type for part definition is not the same !");
1821 for(std::size_t i=0;i<sz;i++)
1823 const PartDefinition *pd0(_part_def[i]),*pd1(other._part_def[i]);
1826 if((!pd0 && pd1) || (pd0 && !pd1))
1828 what=std::string("a cell part def is defined only for one among this or other !");
1831 bool ret(pd0->isEqual(pd1,what));
1838 void MEDFileUMeshAggregateCompute::clearNonDiscrAttributes() const
1840 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1841 MEDFileUMeshSplitL1::ClearNonDiscrAttributes(*it);
1842 MEDFileUMeshSplitL1::ClearNonDiscrAttributes(_m);
1845 void MEDFileUMeshAggregateCompute::synchronizeTinyInfo(const MEDFileMesh& master) const
1847 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1849 const MEDCoupling1GTUMesh *tmp(*it);
1852 (const_cast<MEDCoupling1GTUMesh *>(tmp))->setName(master.getName().c_str());
1853 (const_cast<MEDCoupling1GTUMesh *>(tmp))->setDescription(master.getDescription().c_str());
1854 (const_cast<MEDCoupling1GTUMesh *>(tmp))->setTime(master.getTimeValue(),master.getIteration(),master.getOrder());
1855 (const_cast<MEDCoupling1GTUMesh *>(tmp))->setTimeUnit(master.getTimeUnit());
1858 const MEDCouplingUMesh *m(_m);
1861 (const_cast<MEDCouplingUMesh *>(m))->setName(master.getName().c_str());
1862 (const_cast<MEDCouplingUMesh *>(m))->setDescription(master.getDescription().c_str());
1863 (const_cast<MEDCouplingUMesh *>(m))->setTime(master.getTimeValue(),master.getIteration(),master.getOrder());
1864 (const_cast<MEDCouplingUMesh *>(m))->setTimeUnit(master.getTimeUnit());
1868 bool MEDFileUMeshAggregateCompute::empty() const
1870 if(_mp_time<_m_time)
1871 return ((const MEDCouplingUMesh *)_m)==0;
1872 //else _mp_time>=_m_time)
1873 return _m_parts.empty();
1876 int MEDFileUMeshAggregateCompute::getMeshDimension() const
1878 if(_mp_time<_m_time)
1880 const MEDCouplingUMesh *m(_m);
1882 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getMeshDimension : no umesh in this !");
1883 return m->getMeshDimension();
1887 if(_m_parts.empty())
1888 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getMeshDimension : part mesh is empty !");
1889 const MEDCoupling1GTUMesh *m(_m_parts[0]);
1891 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getMeshDimension : part mesh contains null instance !");
1892 return m->getMeshDimension();
1896 std::vector<int> MEDFileUMeshAggregateCompute::getDistributionOfTypes() const
1898 if(_mp_time<_m_time)
1900 const MEDCouplingUMesh *m(_m);
1902 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getDistributionOfTypes : no umesh in this !");
1903 return m->getDistributionOfTypes();
1907 std::vector<int> ret;
1908 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1910 const MEDCoupling1GTUMesh *tmp(*it);
1912 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getDistributionOfTypes : part mesh contains null instance !");
1913 std::vector<int> ret0(tmp->getDistributionOfTypes());
1914 ret.insert(ret.end(),ret0.begin(),ret0.end());
1920 int MEDFileUMeshAggregateCompute::getSize() const
1922 if(_mp_time<_m_time)
1924 const MEDCouplingUMesh *m(_m);
1926 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getSize : no umesh in this !");
1927 return m->getNumberOfCells();
1932 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1934 const MEDCoupling1GTUMesh *m(*it);
1936 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getSize : part mesh contains null instance !");
1937 ret+=m->getNumberOfCells();
1943 void MEDFileUMeshAggregateCompute::setCoords(DataArrayDouble *coords)
1945 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1947 MEDCoupling1GTUMesh *tmp(*it);
1949 (*it)->setCoords(coords);
1951 MEDCouplingUMesh *m(_m);
1953 m->setCoords(coords);