1 // Copyright (C) 2007-2016 CEA/DEN, EDF R&D
3 // This library is free software; you can redistribute it and/or
4 // modify it under the terms of the GNU Lesser General Public
5 // License as published by the Free Software Foundation; either
6 // version 2.1 of the License, or (at your option) any later version.
8 // This library is distributed in the hope that it will be useful,
9 // but WITHOUT ANY WARRANTY; without even the implied warranty of
10 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
11 // Lesser General Public License for more details.
13 // You should have received a copy of the GNU Lesser General Public
14 // License along with this library; if not, write to the Free Software
15 // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
17 // See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
19 // Author : Anthony Geay (CEA/DEN)
21 #include "MEDFileMeshLL.hxx"
22 #include "MEDFileMesh.hxx"
23 #include "MEDLoaderBase.hxx"
24 #include "MEDFileSafeCaller.txx"
25 #include "MEDFileMeshReadSelector.hxx"
26 #include "MEDFileStructureElement.hxx"
27 #include "MEDFileMeshSupport.hxx"
29 #include "MEDCouplingUMesh.hxx"
31 #include "InterpKernelAutoPtr.hxx"
32 #include "CellModel.hxx"
37 extern med_geometry_type typmai[MED_N_CELL_FIXED_GEO];
38 extern INTERP_KERNEL::NormalizedCellType typmai2[MED_N_CELL_FIXED_GEO];
39 extern med_geometry_type typmainoeud[1];
41 using namespace MEDCoupling;
43 const char MEDFileMeshL2::ZE_SEP_FOR_FAMILY_KILLERS[]="!/__\\!";//important start by - because ord('!')==33 the smallest (!=' ') to preserve orders at most.
45 int MEDFileMeshL2::ZE_SEP2_FOR_FAMILY_KILLERS=4;
47 std::vector<std::string> MeshCls::getAxisInfoOnMesh(med_idt fid, const std::string& mName, MEDCoupling::MEDCouplingMeshType& meshType, MEDCoupling::MEDCouplingAxisType& axType, int& nstep, int& Mdim, MEDFileString& description, MEDFileString& dtunit, MEDFileString& univName) const
49 med_mesh_type type_maillage;
51 med_sorting_type stype;
52 med_axis_type axistype;
53 int naxis(MEDmeshnAxis(fid,getID()));
54 INTERP_KERNEL::AutoPtr<char> nameTmp(MEDLoaderBase::buildEmptyString(MED_NAME_SIZE));
55 INTERP_KERNEL::AutoPtr<char> axisname(MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE));
56 INTERP_KERNEL::AutoPtr<char> axisunit(MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE));
57 INTERP_KERNEL::AutoPtr<char> univTmp(MEDLoaderBase::buildEmptyString(MED_LNAME_SIZE));
58 if(MEDmeshInfo(fid,getID(),nameTmp,&spaceDim,&Mdim,&type_maillage,description.getPointer(),dtunit.getPointer(),
59 &stype,&nstep,&axistype,axisname,axisunit)!=0)
60 throw INTERP_KERNEL::Exception("A problem has been detected when trying to get info on mesh !");
61 MEDmeshUniversalNameRd(fid,nameTmp,univName.getPointer());// do not protect MEDFILESAFECALLERRD0 call : Thanks to fra.med.
62 axType=MEDFileMeshL2::TraduceAxisType(axistype);
65 case MED_UNSTRUCTURED_MESH:
66 meshType=UNSTRUCTURED;
68 case MED_STRUCTURED_MESH:
71 MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mName.c_str(),>));
74 case MED_CARTESIAN_GRID:
77 case MED_CURVILINEAR_GRID:
78 meshType=CURVE_LINEAR;
80 case MED_POLAR_GRID:// this is not a bug. A MED file POLAR_GRID is deal by CARTESIAN MEDLoader
84 throw INTERP_KERNEL::Exception("MEDFileMeshL2::getAxisInfoOnMesh : unrecognized structured mesh type ! Supported are :\n - cartesian\n - curve linear\n");
89 throw INTERP_KERNEL::Exception("MEDFileMeshL2::getMeshIdFromName : unrecognized mesh type !");
92 std::vector<std::string> infosOnComp(naxis);
93 for(int i=0;i<naxis;i++)
95 std::string info(MEDLoaderBase::buildUnionUnit(((char *)axisname)+i*MED_SNAME_SIZE,MED_SNAME_SIZE,((char *)axisunit)+i*MED_SNAME_SIZE,MED_SNAME_SIZE));
101 double MeshCls::checkMeshTimeStep(med_idt fid, const std::string& mName, int nstep, int dt, int it) const
106 std::vector< std::pair<int,int> > p(nstep);
107 for(int i=0;i<nstep;i++)
109 MEDFILESAFECALLERRD0(MEDmeshComputationStepInfo,(fid,mName.c_str(),i+1,&numdt,&numit,&dtt));
110 p[i]=std::make_pair((int)numdt,(int)numit);
111 found=(numdt==dt) && (numit==it);
116 std::ostringstream oss; oss << "No such iteration=" << dt << ",order=" << it << " numbers found for mesh '" << mName << "' ! ";
117 oss << "Possibilities are : ";
118 for(int i=0;i<nstep;i++)
119 oss << "(" << p[i].first << "," << p[i].second << "), ";
120 throw INTERP_KERNEL::Exception(oss.str().c_str());
125 std::vector<std::string> StructMeshCls::getAxisInfoOnMesh(med_idt fid, const std::string& mName, MEDCoupling::MEDCouplingMeshType& meshType, MEDCoupling::MEDCouplingAxisType& axType, int& nstep, int& Mdim, MEDFileString& description, MEDFileString& dtunit, MEDFileString& univName) const
127 INTERP_KERNEL::AutoPtr<char> msn(MEDLoaderBase::buildEmptyString(MED_NAME_SIZE));
128 INTERP_KERNEL::AutoPtr<char> zeDescription(MEDLoaderBase::buildEmptyString(MED_COMMENT_SIZE));
129 med_axis_type medAxType;
130 int nAxis(MEDsupportMeshnAxis(fid,getID()));
131 INTERP_KERNEL::AutoPtr<char> axisName(new char[MED_SNAME_SIZE*nAxis+1]),axisUnit(new char[MED_SNAME_SIZE*nAxis+1]);
132 int spaceDim(0),meshDim(0);
133 MEDFILESAFECALLERRD0(MEDsupportMeshInfo,(fid,getID(),msn,&spaceDim,&meshDim,zeDescription,&medAxType,axisName,axisUnit));
134 std::string descriptionCpp(MEDLoaderBase::buildStringFromFortran(zeDescription,MED_COMMENT_SIZE));
135 description.set(descriptionCpp.c_str());
136 dtunit.clear(); univName.clear(); meshType=UNSTRUCTURED; nstep=1;
137 axType=MEDFileMeshL2::TraduceAxisType(medAxType);
139 //med_bool chgt=MED_FALSE,trsf=MED_FALSE;
140 //nmodels=MEDmeshnEntity(fid,_name.c_str(),MED_NO_DT,MED_NO_IT,MED_STRUCT_ELEMENT,MED_GEO_ALL,MED_CONNECTIVITY,MED_NODAL,&chgt,&trsf);
141 std::vector<std::string> ret;
142 for(int i=0;i<nAxis;i++)
144 std::string info(DataArray::BuildInfoFromVarAndUnit(MEDLoaderBase::buildStringFromFortran(axisName+i*MED_SNAME_SIZE,MED_SNAME_SIZE),
145 MEDLoaderBase::buildStringFromFortran(axisUnit+i*MED_SNAME_SIZE,MED_SNAME_SIZE)));
151 double StructMeshCls::checkMeshTimeStep(med_idt fid, const std::string& mName, int nstep, int dt, int it) const
156 MEDFileMeshL2::MEDFileMeshL2():_name(MED_NAME_SIZE),_description(MED_COMMENT_SIZE),_univ_name(MED_LNAME_SIZE),_dt_unit(MED_LNAME_SIZE)
160 std::size_t MEDFileMeshL2::getHeapMemorySizeWithoutChildren() const
165 std::vector<const BigMemoryObject *> MEDFileMeshL2::getDirectChildrenWithNull() const
167 return std::vector<const BigMemoryObject *>();
170 INTERP_KERNEL::AutoCppPtr<MeshOrStructMeshCls> MEDFileMeshL2::GetMeshIdFromName(med_idt fid, const std::string& mName, MEDCoupling::MEDCouplingMeshType& meshType, MEDCoupling::MEDCouplingAxisType& axType, int& dt, int& it, std::string& dtunit1)
172 med_mesh_type type_maillage;
173 char maillage_description[MED_COMMENT_SIZE+1];
174 char dtunit[MED_LNAME_SIZE+1];
175 med_int spaceDim,dim;
176 char nommaa[MED_NAME_SIZE+1];
177 med_int n=MEDnMesh(fid);
180 med_sorting_type stype;
181 std::vector<std::string> ms;
183 med_axis_type axistype;
184 for(int i=0;i<n && found==0;i++)
186 int naxis(MEDmeshnAxis(fid,i+1));
187 INTERP_KERNEL::AutoPtr<char> axisname(MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE)),axisunit(MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE));
188 MEDFILESAFECALLERRD0(MEDmeshInfo,(fid,i+1,nommaa,&spaceDim,&dim,&type_maillage,maillage_description,dtunit,&stype,&nstep,&axistype,axisname,axisunit));
189 dtunit1=MEDLoaderBase::buildStringFromFortran(dtunit,sizeof(dtunit));
190 std::string cur(MEDLoaderBase::buildStringFromFortran(nommaa,sizeof(nommaa)));
199 {//last chance ! Is it a support mesh ?
200 int nbSM(MEDnSupportMesh(fid));
201 for(int i=0;i<nbSM && found==0;i++)
203 int naxis(MEDsupportMeshnAxis(fid,i+1));
204 INTERP_KERNEL::AutoPtr<char> axisname(MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE)),axisunit(MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE));
205 MEDFILESAFECALLERRD0(MEDsupportMeshInfo,(fid,i+1,nommaa,&spaceDim,&dim,maillage_description,&axistype,axisname,axisunit));
206 std::string cur(MEDLoaderBase::buildStringFromFortran(nommaa,sizeof(nommaa)));
215 ////////////////////////
220 axType=TraduceAxisType(axistype);
221 switch(type_maillage)
223 case MED_UNSTRUCTURED_MESH:
224 meshType=UNSTRUCTURED;
226 case MED_STRUCTURED_MESH:
229 MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mName.c_str(),>));
232 case MED_CARTESIAN_GRID:
235 case MED_CURVILINEAR_GRID:
236 meshType=CURVE_LINEAR;
238 case MED_POLAR_GRID:// this is not a bug. A MED file POLAR_GRID is deal by CARTESIAN MEDLoader
242 throw INTERP_KERNEL::Exception("MEDFileMeshL2::getMeshIdFromName : unrecognized structured mesh type ! Supported are :\n - cartesian\n - curve linear\n");
247 throw INTERP_KERNEL::Exception("MEDFileMeshL2::getMeshIdFromName : unrecognized mesh type !");
251 MEDFILESAFECALLERRD0(MEDmeshComputationStepInfo,(fid,mName.c_str(),1,&numdt,&numit,&dtt));
253 return new MeshCls(ret);
257 meshType=UNSTRUCTURED;
258 dt=MED_NO_DT; it=MED_NO_IT; dtunit1.clear();
259 axType=axType=TraduceAxisType(axistype);
260 return new StructMeshCls(ret);
264 std::ostringstream oss;
265 oss << "No such meshname (" << mName << ") in file ! Must be in : ";
266 std::copy(ms.begin(),ms.end(),std::ostream_iterator<std::string>(oss,", "));
267 throw INTERP_KERNEL::Exception(oss.str().c_str());
274 * non static and non const method because _description, _dt_unit... are set in this method.
276 std::vector<std::string> MEDFileMeshL2::getAxisInfoOnMesh(med_idt fid, const MeshOrStructMeshCls *mId, const std::string& mName, MEDCoupling::MEDCouplingMeshType& meshType, MEDCoupling::MEDCouplingAxisType& axType, int& nstep, int& Mdim)
278 return mId->getAxisInfoOnMesh(fid,mName,meshType,axType,nstep,Mdim,_description,_dt_unit,_univ_name);
281 void MEDFileMeshL2::ReadFamiliesAndGrps(med_idt fid, const std::string& meshName, std::map<std::string,int>& fams, std::map<std::string, std::vector<std::string> >& grps, MEDFileMeshReadSelector *mrs)
283 if(mrs && !(mrs->isCellFamilyFieldReading() || mrs->isNodeFamilyFieldReading()))
285 char nomfam[MED_NAME_SIZE+1];
287 int nfam=MEDnFamily(fid,meshName.c_str());
288 std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > > crudeFams(nfam);
289 for(int i=0;i<nfam;i++)
291 int ngro=MEDnFamilyGroup(fid,meshName.c_str(),i+1);
292 med_int natt=MEDnFamily23Attribute(fid,meshName.c_str(),i+1);
293 INTERP_KERNEL::AutoPtr<med_int> attide=new med_int[natt];
294 INTERP_KERNEL::AutoPtr<med_int> attval=new med_int[natt];
295 INTERP_KERNEL::AutoPtr<char> attdes=new char[MED_COMMENT_SIZE*natt+1];
296 INTERP_KERNEL::AutoPtr<char> gro=new char[MED_LNAME_SIZE*ngro+1];
297 MEDfamily23Info(fid,meshName.c_str(),i+1,nomfam,attide,attval,attdes,&numfam,gro);
298 std::string famName(MEDLoaderBase::buildStringFromFortran(nomfam,MED_NAME_SIZE));
299 std::vector<std::string> grps(ngro);
300 for(int j=0;j<ngro;j++)
301 grps[j]=MEDLoaderBase::buildStringFromFortran(gro+j*MED_LNAME_SIZE,MED_LNAME_SIZE);
302 crudeFams[i]=std::pair<std::string,std::pair<int,std::vector<std::string> > >(famName,std::pair<int,std::vector<std::string> >(numfam,grps));
304 RenameFamiliesFromFileToMemInternal(crudeFams);
305 for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::const_iterator it0=crudeFams.begin();it0!=crudeFams.end();it0++)
307 fams[(*it0).first]=(*it0).second.first;
308 for(std::vector<std::string>::const_iterator it1=(*it0).second.second.begin();it1!=(*it0).second.second.end();it1++)
309 grps[*it1].push_back((*it0).first);
313 void MEDFileMeshL2::WriteFamiliesAndGrps(med_idt fid, const std::string& mname, const std::map<std::string,int>& fams, const std::map<std::string, std::vector<std::string> >& grps, int tooLongStrPol)
315 std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > > crudeFams(fams.size());
317 for(std::map<std::string,int>::const_iterator it=fams.begin();it!=fams.end();it++,ii++)
319 std::vector<std::string> grpsOfFam;
320 for(std::map<std::string, std::vector<std::string> >::const_iterator it1=grps.begin();it1!=grps.end();it1++)
322 if(std::find((*it1).second.begin(),(*it1).second.end(),(*it).first)!=(*it1).second.end())
323 grpsOfFam.push_back((*it1).first);
325 crudeFams[ii]=std::pair<std::string,std::pair<int,std::vector<std::string> > >((*it).first,std::pair<int,std::vector<std::string> >((*it).second,grpsOfFam));
327 RenameFamiliesFromMemToFileInternal(crudeFams);
328 for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::const_iterator it=crudeFams.begin();it!=crudeFams.end();it++)
330 int ngro((*it).second.second.size());
331 INTERP_KERNEL::AutoPtr<char> groName=MEDLoaderBase::buildEmptyString(MED_LNAME_SIZE*ngro);
333 for(std::vector<std::string>::const_iterator it2=(*it).second.second.begin();it2!=(*it).second.second.end();it2++,i++)
334 MEDLoaderBase::safeStrCpy2((*it2).c_str(),MED_LNAME_SIZE-1,groName+i*MED_LNAME_SIZE,tooLongStrPol);
335 INTERP_KERNEL::AutoPtr<char> famName=MEDLoaderBase::buildEmptyString(MED_NAME_SIZE);
336 MEDLoaderBase::safeStrCpy((*it).first.c_str(),MED_NAME_SIZE,famName,tooLongStrPol);
337 int ret=MEDfamilyCr(fid,mname.c_str(),famName,(*it).second.first,ngro,groName);
342 void MEDFileMeshL2::RenameFamiliesPatternInternal(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >& crudeFams, RenameFamiliesPatternFunc func)
345 std::vector<std::string> fams(crudeFams.size());
346 for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::const_iterator it=crudeFams.begin();it!=crudeFams.end();it++,ii++)
347 fams[ii]=(*it).first;
351 for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::iterator it=crudeFams.begin();it!=crudeFams.end();it++,ii++)
352 (*it).first=fams[ii];
356 * This method is dedicated to the killers that use a same family name to store different family ids. MED file API authorizes it.
357 * So this method renames families (if needed generaly not !) in order to have a discriminant name for families.
359 void MEDFileMeshL2::RenameFamiliesFromFileToMemInternal(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >& crudeFams)
361 RenameFamiliesPatternInternal(crudeFams,RenameFamiliesFromFileToMem);
364 bool MEDFileMeshL2::RenameFamiliesFromFileToMem(std::vector< std::string >& famNames)
366 std::map<std::string,int> m;
367 std::set<std::string> s;
368 for(std::vector< std::string >::const_iterator it=famNames.begin();it!=famNames.end();it++)
370 if(s.find(*it)!=s.end())
375 return false;// the general case !
376 for(std::vector< std::string >::iterator it=famNames.begin();it!=famNames.end();it++)
378 std::map<std::string,int>::iterator it2(m.find(*it));
381 std::ostringstream oss; oss << *it << ZE_SEP_FOR_FAMILY_KILLERS << std::setfill('0') << std::setw(ZE_SEP2_FOR_FAMILY_KILLERS) << (*it2).second++;
389 * This method is dedicated to the killers that use a same family name to store different family ids. MED file API authorizes it.
390 * So this method renames families (if needed generaly not !) in order to have a discriminant name for families.
392 void MEDFileMeshL2::RenameFamiliesFromMemToFileInternal(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >& crudeFams)
394 RenameFamiliesPatternInternal(crudeFams,RenameFamiliesFromMemToFile);
397 bool MEDFileMeshL2::RenameFamiliesFromMemToFile(std::vector< std::string >& famNames)
399 bool isSmthingStrange(false);
400 for(std::vector< std::string >::const_iterator it=famNames.begin();it!=famNames.end();it++)
402 std::size_t found((*it).find(ZE_SEP_FOR_FAMILY_KILLERS));
403 if(found!=std::string::npos)
404 isSmthingStrange=true;
406 if(!isSmthingStrange)
409 std::map< std::string, std::vector<std::string> > m;
410 for(std::vector< std::string >::const_iterator it=famNames.begin();it!=famNames.end();it++)
412 std::size_t found((*it).find(ZE_SEP_FOR_FAMILY_KILLERS));
413 if(found!=std::string::npos && found>=1)
415 std::string s1((*it).substr(found+sizeof(ZE_SEP_FOR_FAMILY_KILLERS)-1));
416 if(s1.size()!=ZE_SEP2_FOR_FAMILY_KILLERS)
419 std::istringstream iss(s1);
421 bool isOK((iss.rdstate() & ( std::istream::failbit | std::istream::eofbit)) == std::istream::eofbit);
424 std::string s0((*it).substr(0,found));
425 m[s0].push_back(*it);
432 std::map<std::string,std::string> zeMap;
433 for(std::map< std::string, std::vector<std::string> >::const_iterator it=m.begin();it!=m.end();it++)
435 if((*it).second.size()==1)
437 for(std::vector<std::string>::const_iterator it1=(*it).second.begin();it1!=(*it).second.end();it1++)
438 zeMap[*it1]=(*it).first;
443 for(std::vector< std::string >::iterator it=famNames.begin();it!=famNames.end();it++)
445 std::map<std::string,std::string>::iterator it1(zeMap.find(*it));
452 MEDCoupling::MEDCouplingAxisType MEDFileMeshL2::TraduceAxisType(med_axis_type at)
458 case MED_CYLINDRICAL:
462 case MED_UNDEF_AXIS_TYPE:
465 throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisType : unrecognized axis type !");
469 MEDCoupling::MEDCouplingAxisType MEDFileMeshL2::TraduceAxisTypeStruct(med_grid_type gt)
473 case MED_CARTESIAN_GRID:
478 throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisTypeStruct : only Cartesian and Cylindrical supported by MED file !");
482 med_axis_type MEDFileMeshL2::TraduceAxisTypeRev(MEDCoupling::MEDCouplingAxisType at)
487 return MED_CARTESIAN;
489 return MED_CYLINDRICAL;
491 return MED_SPHERICAL;
493 throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisTypeRev : unrecognized axis type !");
497 med_grid_type MEDFileMeshL2::TraduceAxisTypeRevStruct(MEDCoupling::MEDCouplingAxisType at)
502 return MED_CARTESIAN_GRID;
504 return MED_POLAR_GRID;
506 return MED_POLAR_GRID;
508 throw INTERP_KERNEL::Exception("MEDFileMeshL2::TraduceAxisTypeRevStruct : unrecognized axis type !");
512 MEDFileUMeshL2::MEDFileUMeshL2()
516 std::vector<std::string> MEDFileUMeshL2::loadCommonPart(med_idt fid, const MeshOrStructMeshCls *mId, const std::string& mName, int dt, int it, int& Mdim)
519 _name.set(mName.c_str());
521 MEDCoupling::MEDCouplingMeshType meshType;
522 MEDCoupling::MEDCouplingAxisType dummy3;
523 std::vector<std::string> ret(getAxisInfoOnMesh(fid,mId,mName.c_str(),meshType,dummy3,nstep,Mdim));
527 return std::vector<std::string>();
529 if(meshType!=UNSTRUCTURED)
530 throw INTERP_KERNEL::Exception("Invalid mesh type ! You are expected an unstructured one whereas in file it is not an unstructured !");
531 _time=mId->checkMeshTimeStep(fid,mName,nstep,dt,it);
537 void MEDFileUMeshL2::loadAll(med_idt fid, const MeshOrStructMeshCls *mId, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
540 std::vector<std::string> infosOnComp(loadCommonPart(fid,mId,mName,dt,it,Mdim));
543 loadConnectivity(fid,Mdim,mName,dt,it,mrs);//to improve check (dt,it) coherency
544 loadCoords(fid,infosOnComp,mName,dt,it);
547 void MEDFileUMeshL2::loadPart(med_idt fid, const MeshOrStructMeshCls *mId, const std::string& mName, const std::vector<INTERP_KERNEL::NormalizedCellType>& types, const std::vector<int>& slicPerTyp, int dt, int it, MEDFileMeshReadSelector *mrs)
550 std::vector<std::string> infosOnComp(loadCommonPart(fid,mId,mName,dt,it,Mdim));
553 loadPartOfConnectivity(fid,Mdim,mName,types,slicPerTyp,dt,it,mrs);
554 med_bool changement,transformation;
555 int nCoords(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation));
556 std::vector<bool> fetchedNodeIds(nCoords,false);
557 for(std::vector< std::vector< MCAuto<MEDFileUMeshPerType> > >::const_iterator it0=_per_type_mesh.begin();it0!=_per_type_mesh.end();it0++)
558 for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it1=(*it0).begin();it1!=(*it0).end();it1++)
559 (*it1)->getMesh()->computeNodeIdsAlg(fetchedNodeIds);
560 int nMin(std::distance(fetchedNodeIds.begin(),std::find(fetchedNodeIds.begin(),fetchedNodeIds.end(),true)));
561 int nMax(std::distance(fetchedNodeIds.rbegin(),std::find(fetchedNodeIds.rbegin(),fetchedNodeIds.rend(),true)));
563 for(std::vector< std::vector< MCAuto<MEDFileUMeshPerType> > >::const_iterator it0=_per_type_mesh.begin();it0!=_per_type_mesh.end();it0++)
564 for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it1=(*it0).begin();it1!=(*it0).end();it1++)
565 (*it1)->getMesh()->renumberNodesWithOffsetInConn(-nMin);
566 loadPartCoords(fid,infosOnComp,mName,dt,it,nMin,nMax);
569 void MEDFileUMeshL2::loadConnectivity(med_idt fid, int mdim, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
571 _per_type_mesh.resize(1);
572 _per_type_mesh[0].clear();
573 for(int j=0;j<MED_N_CELL_FIXED_GEO;j++)
575 MEDFileUMeshPerType *tmp(MEDFileUMeshPerType::New(fid,mName.c_str(),dt,it,mdim,typmai[j],typmai2[j],mrs));
577 _per_type_mesh[0].push_back(tmp);
582 void MEDFileUMeshL2::loadPartOfConnectivity(med_idt fid, int mdim, const std::string& mName, const std::vector<INTERP_KERNEL::NormalizedCellType>& types, const std::vector<int>& slicPerTyp, int dt, int it, MEDFileMeshReadSelector *mrs)
584 std::size_t nbOfTypes(types.size());
585 if(slicPerTyp.size()!=3*nbOfTypes)
586 throw INTERP_KERNEL::Exception("MEDFileUMeshL2::loadPartOfConnectivity : The size of slicPerTyp array is expected to be equal to 3 times size of array types !");
587 std::set<INTERP_KERNEL::NormalizedCellType> types2(types.begin(),types.end());
588 if(types2.size()!=nbOfTypes)
589 throw INTERP_KERNEL::Exception("MEDFileUMeshL2::loadPartOfConnectivity : the geometric types in types array must appear once !");
590 _per_type_mesh.resize(1);
591 _per_type_mesh[0].clear();
592 for(std::size_t ii=0;ii<nbOfTypes;ii++)
594 int strt(slicPerTyp[3*ii+0]),stp(slicPerTyp[3*ii+1]),step(slicPerTyp[3*ii+2]);
595 MCAuto<MEDFileUMeshPerType> tmp(MEDFileUMeshPerType::NewPart(fid,mName.c_str(),dt,it,mdim,types[ii],strt,stp,step,mrs));
596 _per_type_mesh[0].push_back(tmp);
601 void MEDFileUMeshL2::loadCoords(med_idt fid, const std::vector<std::string>& infosOnComp, const std::string& mName, int dt, int it)
603 int spaceDim((int)infosOnComp.size());
604 med_bool changement,transformation;
605 int nCoords(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation));
606 _coords=DataArrayDouble::New();
607 _coords->alloc(nCoords,spaceDim);
608 double *coordsPtr(_coords->getPointer());
610 MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateRd,(fid,mName.c_str(),dt,it,MED_FULL_INTERLACE,coordsPtr));
611 if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_FAMILY_NUMBER,MED_NODAL,&changement,&transformation)>0)
613 _fam_coords=DataArrayInt::New();
614 _fam_coords->alloc(nCoords,1);
615 MEDFILESAFECALLERRD0(MEDmeshEntityFamilyNumberRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_fam_coords->getPointer()));
619 if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NUMBER,MED_NODAL,&changement,&transformation)>0)
621 _num_coords=DataArrayInt::New();
622 _num_coords->alloc(nCoords,1);
623 MEDFILESAFECALLERRD0(MEDmeshEntityNumberRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_num_coords->getPointer()));
627 if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NAME,MED_NODAL,&changement,&transformation)>0)
629 _name_coords=DataArrayAsciiChar::New();
630 _name_coords->alloc(nCoords+1,MED_SNAME_SIZE);//not a bug to avoid the memory corruption due to last \0 at the end
631 MEDFILESAFECALLERRD0(MEDmeshEntityNameRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_name_coords->getPointer()));
632 _name_coords->reAlloc(nCoords);//not a bug to avoid the memory corruption due to last \0 at the end
636 for(int i=0;i<spaceDim;i++)
637 _coords->setInfoOnComponent(i,infosOnComp[i]);
640 void MEDFileUMeshL2::loadPartCoords(med_idt fid, const std::vector<std::string>& infosOnComp, const std::string& mName, int dt, int it, int nMin, int nMax)
642 med_bool changement,transformation;
643 int spaceDim((int)infosOnComp.size()),nCoords(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation));
644 _coords=DataArrayDouble::New();
645 int nbNodesToLoad(nMax-nMin);
646 _coords->alloc(nbNodesToLoad,spaceDim);
647 med_filter filter=MED_FILTER_INIT,filter2=MED_FILTER_INIT;
648 MEDfilterBlockOfEntityCr(fid,/*nentity*/nCoords,/*nvaluesperentity*/1,/*nconstituentpervalue*/spaceDim,
649 MED_ALL_CONSTITUENT,MED_FULL_INTERLACE,MED_COMPACT_STMODE,MED_NO_PROFILE,
650 /*start*/nMin+1,/*stride*/1,/*count*/1,/*blocksize*/nbNodesToLoad,
651 /*lastblocksize=useless because count=1*/0,&filter);
652 MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateAdvancedRd,(fid,mName.c_str(),dt,it,&filter,_coords->getPointer()));
653 _part_coords=PartDefinition::New(nMin,nMax,1);
654 MEDfilterClose(&filter);
655 MEDfilterBlockOfEntityCr(fid,nCoords,1,1,MED_ALL_CONSTITUENT,MED_FULL_INTERLACE,MED_COMPACT_STMODE,
656 MED_NO_PROFILE,nMin+1,1,1,nbNodesToLoad,0,&filter2);
657 if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_FAMILY_NUMBER,MED_NODAL,&changement,&transformation)>0)
659 _fam_coords=DataArrayInt::New();
660 _fam_coords->alloc(nbNodesToLoad,1);
661 MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_FAMILY_NUMBER,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_fam_coords->getPointer()));
665 if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NUMBER,MED_NODAL,&changement,&transformation)>0)
667 _num_coords=DataArrayInt::New();
668 _num_coords->alloc(nbNodesToLoad,1);
669 MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_NUMBER,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_num_coords->getPointer()));
673 if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NAME,MED_NODAL,&changement,&transformation)>0)
675 _name_coords=DataArrayAsciiChar::New();
676 _name_coords->alloc(nbNodesToLoad+1,MED_SNAME_SIZE);//not a bug to avoid the memory corruption due to last \0 at the end
677 MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_NAME,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_name_coords->getPointer()));
678 _name_coords->reAlloc(nbNodesToLoad);//not a bug to avoid the memory corruption due to last \0 at the end
682 MEDfilterClose(&filter2);
683 _coords->setInfoOnComponents(infosOnComp);
686 void MEDFileUMeshL2::sortTypes()
689 std::vector< MCAuto<MEDFileUMeshPerType> > tmp(_per_type_mesh[0]);
690 _per_type_mesh.clear();
691 for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it=tmp.begin();it!=tmp.end();it++)
692 mdims.insert((*it)->getDim());
695 int mdim=*mdims.rbegin();
696 _per_type_mesh.resize(mdim+1);
697 for(int dim=mdim+1;dim!=0;dim--)
699 std::vector< MCAuto<MEDFileUMeshPerType> >& elt=_per_type_mesh[mdim+1-dim];
700 for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it=tmp.begin();it!=tmp.end();it++)
701 if((*it)->getDim()==dim-1)
704 // suppression of contiguous empty levels at the end of _per_type_mesh.
705 int nbOfUselessLev=0;
707 for(std::vector< std::vector< MCAuto<MEDFileUMeshPerType> > >::reverse_iterator it2=_per_type_mesh.rbegin();it2!=_per_type_mesh.rend();it2++)
709 if((*it2).empty() && isFirst)
716 _per_type_mesh.resize(_per_type_mesh.size()-nbOfUselessLev);
719 void MEDFileUMeshL2::WriteCoords(med_idt fid, const std::string& mname, int dt, int it, double time, const DataArrayDouble *coords, const DataArrayInt *famCoords, const DataArrayInt *numCoords, const DataArrayAsciiChar *nameCoords)
723 MEDFILESAFECALLERWR0(MEDmeshNodeCoordinateWr,(fid,mname.c_str(),dt,it,time,MED_FULL_INTERLACE,coords->getNumberOfTuples(),coords->getConstPointer()));
725 MEDFILESAFECALLERWR0(MEDmeshEntityFamilyNumberWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,famCoords->getNumberOfTuples(),famCoords->getConstPointer()));
727 MEDFILESAFECALLERWR0(MEDmeshEntityNumberWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,numCoords->getNumberOfTuples(),numCoords->getConstPointer()));
730 if(nameCoords->getNumberOfComponents()!=MED_SNAME_SIZE)
732 std::ostringstream oss; oss << " MEDFileUMeshL2::WriteCoords : expected a name field on nodes with number of components set to " << MED_SNAME_SIZE;
733 oss << " ! The array has " << nameCoords->getNumberOfComponents() << " components !";
734 throw INTERP_KERNEL::Exception(oss.str().c_str());
736 MEDFILESAFECALLERWR0(MEDmeshEntityNameWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,nameCoords->getNumberOfTuples(),nameCoords->getConstPointer()));
740 bool MEDFileUMeshL2::isFamDefinedOnLev(int levId) const
742 for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
743 if((*it)->getFam()==0)
748 bool MEDFileUMeshL2::isNumDefinedOnLev(int levId) const
750 for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
751 if((*it)->getNum()==0)
756 bool MEDFileUMeshL2::isNamesDefinedOnLev(int levId) const
758 for(std::vector< MCAuto<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
759 if((*it)->getNames()==0)
764 MEDFileCMeshL2::MEDFileCMeshL2():_ax_type(AX_CART)
768 void MEDFileCMeshL2::loadAll(med_idt fid, const MeshOrStructMeshCls *mId, const std::string& mName, int dt, int it)
770 _name.set(mName.c_str());
773 MEDCoupling::MEDCouplingMeshType meshType;
774 MEDCoupling::MEDCouplingAxisType dummy3;
775 std::vector<std::string> infosOnComp(getAxisInfoOnMesh(fid,mId,mName.c_str(),meshType,dummy3,nstep,Mdim));
776 if(meshType!=CARTESIAN)
777 throw INTERP_KERNEL::Exception("Invalid mesh type ! You are expected a structured one whereas in file it is not a structured !");
778 _time=mId->checkMeshTimeStep(fid,mName,nstep,dt,it);
782 med_grid_type gridtype;
783 MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mName.c_str(),&gridtype));
784 if(gridtype!=MED_CARTESIAN_GRID && gridtype!=MED_POLAR_GRID)
785 throw INTERP_KERNEL::Exception("Invalid rectilinear mesh ! Only cartesian and polar are supported !");
786 _ax_type=TraduceAxisTypeStruct(gridtype);
787 _cmesh=MEDCouplingCMesh::New();
788 for(int i=0;i<Mdim;i++)
790 med_data_type dataTypeReq=GetDataTypeCorrespondingToSpaceId(i);
791 med_bool chgt=MED_FALSE,trsf=MED_FALSE;
792 int nbOfElt(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,dataTypeReq,MED_NO_CMODE,&chgt,&trsf));
793 MCAuto<DataArrayDouble> da=DataArrayDouble::New();
794 da->alloc(nbOfElt,1);
795 da->setInfoOnComponent(0,infosOnComp[i]);
796 MEDFILESAFECALLERRD0(MEDmeshGridIndexCoordinateRd,(fid,mName.c_str(),dt,it,i+1,da->getPointer()));
797 _cmesh->setCoordsAt(i,da);
801 med_data_type MEDFileCMeshL2::GetDataTypeCorrespondingToSpaceId(int id)
806 return MED_COORDINATE_AXIS1;
808 return MED_COORDINATE_AXIS2;
810 return MED_COORDINATE_AXIS3;
812 throw INTERP_KERNEL::Exception("Invalid meshdim detected in Cartesian Grid !");
816 MEDFileCLMeshL2::MEDFileCLMeshL2()
820 void MEDFileCLMeshL2::loadAll(med_idt fid, const MeshOrStructMeshCls *mId, const std::string& mName, int dt, int it)
822 _name.set(mName.c_str());
825 MEDCoupling::MEDCouplingMeshType meshType;
826 MEDCoupling::MEDCouplingAxisType dummy3;
827 std::vector<std::string> infosOnComp(getAxisInfoOnMesh(fid,mId,mName,meshType,dummy3,nstep,Mdim));
828 if(meshType!=CURVE_LINEAR)
829 throw INTERP_KERNEL::Exception("Invalid mesh type ! You are expected a structured one whereas in file it is not a structured !");
830 _time=mId->checkMeshTimeStep(fid,mName,nstep,dt,it);
834 _clmesh=MEDCouplingCurveLinearMesh::New();
835 INTERP_KERNEL::AutoPtr<int> stGrid=new int[Mdim];
836 MEDFILESAFECALLERRD0(MEDmeshGridStructRd,(fid,mName.c_str(),dt,it,stGrid));
837 _clmesh->setNodeGridStructure(stGrid,((int *)stGrid)+Mdim);
838 med_bool chgt=MED_FALSE,trsf=MED_FALSE;
839 int nbNodes(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&chgt,&trsf));
840 MCAuto<DataArrayDouble> da=DataArrayDouble::New();
841 da->alloc(nbNodes,infosOnComp.size());
842 da->setInfoOnComponents(infosOnComp);
843 MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateRd,(fid,mName.c_str(),dt,it,MED_FULL_INTERLACE,da->getPointer()));
844 _clmesh->setCoords(da);
847 MEDFileUMeshPermCompute::MEDFileUMeshPermCompute(const MEDFileUMeshSplitL1* st):_st(st),_mpt_time(0),_num_time(0)
852 * Warning it returns an instance to deallocate !!!!
854 MEDFileUMeshPermCompute::operator MEDCouplingUMesh *() const
856 _st->_num->updateTime();
857 if((MEDCouplingUMesh *)_m==0)
860 _m=static_cast<MEDCouplingUMesh *>(_st->_m_by_types.getUmesh()->deepCopy());
861 _m->renumberCells(_st->_num->getConstPointer(),true);
866 if(_mpt_time==_st->_m_by_types.getTimeOfThis() && _num_time==_st->_num->getTimeOfThis())
871 _m=static_cast<MEDCouplingUMesh *>(_st->_m_by_types.getUmesh()->deepCopy());
872 _m->renumberCells(_st->_num->getConstPointer(),true);
878 void MEDFileUMeshPermCompute::operator=(MEDCouplingUMesh *m)
883 void MEDFileUMeshPermCompute::updateTime() const
885 _mpt_time=_st->_m_by_types.getTimeOfThis();
886 _num_time=_st->_num->getTimeOfThis();
889 std::vector<const BigMemoryObject *> MEDFileUMeshPermCompute::getDirectChildrenWithNull() const
891 std::vector<const BigMemoryObject *> ret;
892 ret.push_back((const MEDCouplingUMesh *)_m);
896 std::size_t MEDFileUMeshPermCompute::getHeapMemorySizeWithoutChildren() const
898 return sizeof(MEDFileUMeshPermCompute);
901 MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(const MEDFileUMeshSplitL1& other):RefCountObject(other),_m_by_types(other._m_by_types),_fam(other._fam),_num(other._num),_names(other._names),_rev_num(other._rev_num),_m(this)
905 MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(const MEDFileUMeshL2& l2, const std::string& mName, int id):_m(this)
907 const std::vector< MCAuto<MEDFileUMeshPerType> >& v=l2.getLev(id);
911 std::vector<const MEDCoupling1GTUMesh *> ms(sz);
912 std::vector<const DataArrayInt *> fams(sz),nums(sz);
913 std::vector<const DataArrayChar *> names(sz);
914 std::vector<const PartDefinition *> pds(sz);
915 for(int i=0;i<sz;i++)
917 MEDCoupling1GTUMesh *elt(v[i]->getMesh());
918 MCAuto<DataArrayDouble> tmp2=l2.getCoords();
919 elt->setCoords(tmp2);
921 pds[i]=v[i]->getPartDef();
923 _m_by_types.assignParts(ms);
924 _m_by_types.assignDefParts(pds);
925 if(l2.isFamDefinedOnLev(id))
927 for(int i=0;i<sz;i++)
928 fams[i]=v[i]->getFam();
930 _fam=DataArrayInt::Aggregate(fams);
934 _fam=const_cast<DataArrayInt *>(fams[0]);
937 if(l2.isNumDefinedOnLev(id))
939 for(int i=0;i<sz;i++)
940 nums[i]=v[i]->getNum();
942 _num=DataArrayInt::Aggregate(nums);
946 _num=const_cast<DataArrayInt *>(nums[0]);
950 if(l2.isNamesDefinedOnLev(id))
952 for(int i=0;i<sz;i++)
953 names[i]=v[i]->getNames();
954 _names=dynamic_cast<DataArrayAsciiChar *>(DataArrayChar::Aggregate(names));
958 MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(MEDCoupling1GTUMesh *m):_m(this)
960 std::vector< const MEDCoupling1GTUMesh * > v(1);
965 MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(MEDCouplingUMesh *m):_m(this)
970 MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(MEDCouplingUMesh *m, bool newOrOld):_m(this)
972 assignMesh(m,newOrOld);
975 void MEDFileUMeshSplitL1::setName(const std::string& name)
977 _m_by_types.setName(name);
980 std::size_t MEDFileUMeshSplitL1::getHeapMemorySizeWithoutChildren() const
985 std::vector<const BigMemoryObject *> MEDFileUMeshSplitL1::getDirectChildrenWithNull() const
987 std::vector<const BigMemoryObject *> ret;
988 ret.push_back(&_m_by_types);
990 ret.push_back((const DataArrayInt*)_fam);
991 ret.push_back((const DataArrayInt*)_num);
992 ret.push_back((const DataArrayInt*)_rev_num);
993 ret.push_back((const DataArrayAsciiChar*)_names);
997 MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::shallowCpyUsingCoords(DataArrayDouble *coords) const
999 MCAuto<MEDFileUMeshSplitL1> ret(new MEDFileUMeshSplitL1(*this));
1000 ret->_m_by_types.shallowCpyMeshes();
1001 ret->_m_by_types.setCoords(coords);
1005 MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::deepCopy(DataArrayDouble *coords) const
1007 MCAuto<MEDFileUMeshSplitL1> ret(new MEDFileUMeshSplitL1(*this));
1008 ret->_m_by_types=_m_by_types.deepCopy(coords);
1009 if((const DataArrayInt *)_fam)
1010 ret->_fam=_fam->deepCopy();
1011 if((const DataArrayInt *)_num)
1012 ret->_num=_num->deepCopy();
1013 if((const DataArrayInt *)_rev_num)
1014 ret->_rev_num=_rev_num->deepCopy();
1015 if((const DataArrayAsciiChar *)_names)
1016 ret->_names=_names->deepCopy();
1020 void MEDFileUMeshSplitL1::checkConsistency() const
1022 if (!_fam || _fam->getNumberOfTuples() != getSize())
1023 throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::checkConsistency(): internal family array has an invalid size!");
1024 int nbCells = getSize();
1027 _num->checkNbOfTuplesAndComp(nbCells,1,"MEDFileUMeshSplitL1::checkConsistency(): inconsistent internal node numbering array!");
1029 int maxValue=_num->getMaxValue(pos);
1030 if (!_rev_num || _rev_num->getNumberOfTuples() != (maxValue+1))
1031 throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::checkConsistency(): inconsistent internal revert node numbering array!");
1033 if ((_num && !_rev_num) || (!_num && _rev_num))
1034 throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::checkConsistency(): inconsistent internal numbering arrays (one is null)!");
1035 if (_num && !_num->hasUniqueValues())
1036 throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::checkConsistency(): inconsistent internal node numbering array: duplicates found!");
1038 _names->checkNbOfTuplesAndComp(nbCells,1,"MEDFileUMeshSplitL1::checkConsistency(): internal cell naming array has an invalid size!");
1040 _m_by_types.checkConsistency();
1043 bool MEDFileUMeshSplitL1::isEqual(const MEDFileUMeshSplitL1 *other, double eps, std::string& what) const
1045 if(!_m_by_types.isEqual(other->_m_by_types,eps,what))
1047 const DataArrayInt *d1=_fam;
1048 const DataArrayInt *d2=other->_fam;
1049 if((d1==0 && d2!=0) || (d1!=0 && d2==0))
1051 what="Presence of family arr in one sublevel and not in other!";
1055 if(!d1->isEqual(*d2))
1057 what="family arr at a sublevel are not deeply equal !";
1062 if((d1==0 && d2!=0) || (d1!=0 && d2==0))
1064 what="Presence of cell numbering arr in one sublevel and not in other!";
1068 if(!d1->isEqual(*d2))
1070 what="Numbering cell arr at a sublevel are not deeply equal !";
1073 const DataArrayAsciiChar *e1=_names;
1074 const DataArrayAsciiChar *e2=other->_names;
1075 if((e1==0 && e2!=0) || (e1!=0 && e2==0))
1077 what="Presence of cell names arr in one sublevel and not in other!";
1081 if(!e1->isEqual(*e2))
1083 what="Name cell arr at a sublevel are not deeply equal !";
1089 void MEDFileUMeshSplitL1::synchronizeTinyInfo(const MEDFileMesh& master) const
1091 _m_by_types.synchronizeTinyInfo(master);
1094 void MEDFileUMeshSplitL1::clearNonDiscrAttributes() const
1096 _m_by_types.clearNonDiscrAttributes();
1099 void MEDFileUMeshSplitL1::ClearNonDiscrAttributes(const MEDCouplingMesh *tmp)
1103 (const_cast<MEDCouplingMesh *>(tmp))->setName("");
1104 (const_cast<MEDCouplingMesh *>(tmp))->setDescription("");
1105 (const_cast<MEDCouplingMesh *>(tmp))->setTime(0.,-1,-1);
1106 (const_cast<MEDCouplingMesh *>(tmp))->setTimeUnit("");
1109 void MEDFileUMeshSplitL1::setCoords(DataArrayDouble *coords)
1111 _m_by_types.setCoords(coords);
1114 void MEDFileUMeshSplitL1::assignMesh(MEDCouplingUMesh *m, bool newOrOld)
1120 _m_by_types.assignUMesh(dynamic_cast<MEDCouplingUMesh *>(m->deepCopy()));
1121 MCAuto<DataArrayInt> da=_m_by_types.getUmesh()->getRenumArrForConsecutiveCellTypesSpec(typmai2,typmai2+MED_N_CELL_FIXED_GEO);
1122 if(!da->isIota(m->getNumberOfCells()))
1124 _num=da->invertArrayO2N2N2O(m->getNumberOfCells());
1127 _m_by_types.getUmesh()->renumberCells(da->getConstPointer(),false);
1132 if(!m->checkConsecutiveCellTypesAndOrder(typmai2,typmai2+MED_N_CELL_FIXED_GEO))
1133 throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::assignMesh(): the mesh does not follow the MED file numbering convention! Invoke sortCellsInMEDFileFrmt() first!");
1135 _m_by_types.assignUMesh(m);
1140 void MEDFileUMeshSplitL1::forceComputationOfParts() const
1142 _m_by_types.forceComputationOfPartsFromUMesh();
1145 void MEDFileUMeshSplitL1::assignParts(const std::vector< const MEDCoupling1GTUMesh * >& mParts)
1147 _m_by_types.assignParts(mParts);
1151 MEDFileUMeshSplitL1::MEDFileUMeshSplitL1():_m(this)
1155 void MEDFileUMeshSplitL1::assignCommonPart()
1157 _fam=DataArrayInt::New();
1158 _fam->alloc(_m_by_types.getSize(),1);
1159 _fam->fillWithValue(0);
1162 bool MEDFileUMeshSplitL1::empty() const
1164 return _m_by_types.empty();
1167 bool MEDFileUMeshSplitL1::presenceOfOneFams(const std::vector<int>& ids) const
1169 const DataArrayInt *fam=_fam;
1172 return fam->presenceOfValue(ids);
1175 int MEDFileUMeshSplitL1::getMeshDimension() const
1177 return _m_by_types.getMeshDimension();
1180 void MEDFileUMeshSplitL1::simpleRepr(std::ostream& oss) const
1182 std::vector<int> code=_m_by_types.getDistributionOfTypes();
1183 int nbOfTypes=code.size()/3;
1184 for(int i=0;i<nbOfTypes;i++)
1186 INTERP_KERNEL::NormalizedCellType typ=(INTERP_KERNEL::NormalizedCellType) code[3*i];
1187 oss << " - Number of cells with type " << INTERP_KERNEL::CellModel::GetCellModel(typ).getRepr() << " : " << code[3*i+1] << std::endl;
1191 int MEDFileUMeshSplitL1::getSize() const
1193 return _m_by_types.getSize();
1196 MEDCouplingUMesh *MEDFileUMeshSplitL1::getFamilyPart(const int *idsBg, const int *idsEnd, bool renum) const
1198 MCAuto<DataArrayInt> eltsToKeep=_fam->findIdsEqualList(idsBg,idsEnd);
1199 MEDCouplingUMesh *m=(MEDCouplingUMesh *)_m_by_types.getUmesh()->buildPartOfMySelf(eltsToKeep->getConstPointer(),eltsToKeep->getConstPointer()+eltsToKeep->getNumberOfTuples(),true);
1201 return renumIfNeeded(m,eltsToKeep->getConstPointer());
1205 DataArrayInt *MEDFileUMeshSplitL1::getFamilyPartArr(const int *idsBg, const int *idsEnd, bool renum) const
1207 MCAuto<DataArrayInt> da=_fam->findIdsEqualList(idsBg,idsEnd);
1209 return renumIfNeededArr(da);
1213 std::vector<INTERP_KERNEL::NormalizedCellType> MEDFileUMeshSplitL1::getGeoTypes() const
1215 return _m_by_types.getGeoTypes();
1218 int MEDFileUMeshSplitL1::getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType ct) const
1220 return _m_by_types.getNumberOfCellsWithType(ct);
1223 MEDCouplingUMesh *MEDFileUMeshSplitL1::getWholeMesh(bool renum) const
1225 MCAuto<MEDCouplingUMesh> tmp;
1226 if(renum && ((const DataArrayInt *)_num))
1229 { tmp=_m_by_types.getUmesh(); if(tmp) tmp->incrRef(); }
1233 int MEDFileUMeshSplitL1::getNumberOfCells() const
1235 return _m_by_types.getNumberOfCells();
1238 DataArrayInt *MEDFileUMeshSplitL1::extractFamilyFieldOnGeoType(INTERP_KERNEL::NormalizedCellType gt) const
1240 const DataArrayInt *fam(_fam);
1243 int start(0),stop(0);
1244 _m_by_types.getStartStopOfGeoTypeWithoutComputation(gt,start,stop);
1245 return fam->selectByTupleIdSafeSlice(start,stop,1);
1248 DataArrayInt *MEDFileUMeshSplitL1::extractNumberFieldOnGeoType(INTERP_KERNEL::NormalizedCellType gt) const
1250 const DataArrayInt *num(_num);
1253 int start(0),stop(0);
1254 _m_by_types.getStartStopOfGeoTypeWithoutComputation(gt,start,stop);
1255 return num->selectByTupleIdSafeSlice(start,stop,1);
1258 DataArrayInt *MEDFileUMeshSplitL1::getOrCreateAndGetFamilyField()
1260 if((DataArrayInt *)_fam)
1262 int nbOfTuples=_m_by_types.getSize();
1263 _fam=DataArrayInt::New(); _fam->alloc(nbOfTuples,1); _fam->fillWithZero();
1267 const DataArrayInt *MEDFileUMeshSplitL1::getFamilyField() const
1272 const DataArrayInt *MEDFileUMeshSplitL1::getNumberField() const
1277 const DataArrayInt *MEDFileUMeshSplitL1::getRevNumberField() const
1282 const DataArrayAsciiChar *MEDFileUMeshSplitL1::getNameField() const
1287 const PartDefinition *MEDFileUMeshSplitL1::getPartDef(INTERP_KERNEL::NormalizedCellType gt) const
1289 return _m_by_types.getPartDefOfWithoutComputation(gt);
1292 void MEDFileUMeshSplitL1::eraseFamilyField()
1294 _fam->fillWithZero();
1298 * This method ignores _m and _m_by_types.
1300 void MEDFileUMeshSplitL1::setGroupsFromScratch(const std::vector<const MEDCouplingUMesh *>& ms, std::map<std::string,int>& familyIds,
1301 std::map<std::string, std::vector<std::string> >& groups)
1303 std::vector< DataArrayInt * > corr;
1304 _m=MEDCouplingUMesh::FuseUMeshesOnSameCoords(ms,0,corr);
1305 std::vector< MCAuto<DataArrayInt> > corrMSafe(corr.begin(),corr.end());
1306 std::vector< std::vector<int> > fidsOfGroups;
1307 std::vector< const DataArrayInt * > corr2(corr.begin(),corr.end());
1308 _fam=DataArrayInt::MakePartition(corr2,((MEDCouplingUMesh *)_m)->getNumberOfCells(),fidsOfGroups);
1309 int nbOfCells=((MEDCouplingUMesh *)_m)->getNumberOfCells();
1310 std::map<int,std::string> newfams;
1311 std::map<int,int> famIdTrad;
1312 TraduceFamilyNumber(fidsOfGroups,familyIds,famIdTrad,newfams);
1313 int *w=_fam->getPointer();
1314 for(int i=0;i<nbOfCells;i++,w++)
1318 void MEDFileUMeshSplitL1::write(med_idt fid, const std::string& mName, int mdim) const
1320 std::vector<MEDCoupling1GTUMesh *> ms(_m_by_types.getParts());
1322 for(std::vector<MEDCoupling1GTUMesh *>::const_iterator it=ms.begin();it!=ms.end();it++)
1324 int nbCells=(*it)->getNumberOfCells();
1325 int end=start+nbCells;
1326 MCAuto<DataArrayInt> fam,num;
1327 MCAuto<DataArrayAsciiChar> names;
1328 if((const DataArrayInt *)_fam)
1329 fam=_fam->subArray(start,end);
1330 if((const DataArrayInt *)_num)
1331 num=_num->subArray(start,end);
1332 if((const DataArrayAsciiChar *)_names)
1333 names=static_cast<DataArrayAsciiChar *>(_names->subArray(start,end));
1334 MEDFileUMeshPerType::Write(fid,mName,mdim,(*it),fam,num,names);
1339 void MEDFileUMeshSplitL1::renumberNodesInConn(const int *newNodeNumbersO2N)
1341 _m_by_types.renumberNodesInConnWithoutComputation(newNodeNumbersO2N);
1344 void MEDFileUMeshSplitL1::serialize(std::vector<int>& tinyInt, std::vector< MCAuto<DataArrayInt> >& bigArraysI) const
1346 bigArraysI.push_back(_fam);
1347 bigArraysI.push_back(_num);
1348 _m_by_types.serialize(tinyInt,bigArraysI);
1351 void MEDFileUMeshSplitL1::unserialize(const std::string& name, DataArrayDouble *coo, std::vector<int>& tinyInt, std::vector< MCAuto<DataArrayInt> >& bigArraysI)
1353 _fam=bigArraysI.back(); bigArraysI.pop_back();
1354 _num=bigArraysI.back(); bigArraysI.pop_back();
1355 _m_by_types.unserialize(name,coo,tinyInt,bigArraysI);
1358 void MEDFileUMeshSplitL1::changeFamilyIdArr(int oldId, int newId)
1360 DataArrayInt *arr=_fam;
1362 arr->changeValue(oldId,newId);
1365 void MEDFileUMeshSplitL1::setFamilyArr(DataArrayInt *famArr)
1372 int sz(_m_by_types.getSize());
1373 famArr->checkNbOfTuplesAndComp(sz,1,"MEDFileUMeshSplitL1::setFamilyArr : Problem in size of Family arr ! ");
1378 DataArrayInt *MEDFileUMeshSplitL1::getFamilyField()
1383 void MEDFileUMeshSplitL1::setRenumArr(DataArrayInt *renumArr)
1391 int sz(_m_by_types.getSize());
1392 renumArr->checkNbOfTuplesAndComp(sz,1,"MEDFileUMeshSplitL1::setRenumArr : Problem in size of numbering arr ! ");
1393 renumArr->incrRef();
1398 void MEDFileUMeshSplitL1::setNameArr(DataArrayAsciiChar *nameArr)
1405 int sz(_m_by_types.getSize());
1406 nameArr->checkNbOfTuplesAndComp(sz,MED_SNAME_SIZE,"MEDFileUMeshSplitL1::setNameArr : Problem in size of name arr ! ");
1411 MEDCouplingUMesh *MEDFileUMeshSplitL1::Renumber2(const DataArrayInt *renum, MEDCouplingUMesh *m, const int *cellIds)
1416 m->renumberCells(renum->getConstPointer(),true);
1419 MCAuto<DataArrayInt> locnum=renum->selectByTupleId(cellIds,cellIds+m->getNumberOfCells());
1420 m->renumberCells(locnum->getConstPointer(),true);
1425 MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::Unserialize(const std::string& name, DataArrayDouble *coo, std::vector<int>& tinyInt, std::vector< MCAuto<DataArrayInt> >& bigArraysI)
1427 MCAuto<MEDFileUMeshSplitL1> ret(new MEDFileUMeshSplitL1);
1428 ret->unserialize(name,coo,tinyInt,bigArraysI);
1432 MEDCouplingUMesh *MEDFileUMeshSplitL1::renumIfNeeded(MEDCouplingUMesh *m, const int *cellIds) const
1434 return Renumber2(_num,m,cellIds);
1437 DataArrayInt *MEDFileUMeshSplitL1::Renumber(const DataArrayInt *renum, const DataArrayInt *da)
1439 if((const DataArrayInt *)renum==0)
1442 return const_cast<DataArrayInt *>(da);
1444 return renum->selectByTupleId(da->getConstPointer(),da->getConstPointer()+da->getNumberOfTuples());
1447 DataArrayInt *MEDFileUMeshSplitL1::renumIfNeededArr(const DataArrayInt *da) const
1449 return Renumber(_num,da);
1452 std::vector<int> MEDFileUMeshSplitL1::GetNewFamiliesNumber(int nb, const std::map<std::string,int>& families)
1455 for(std::map<std::string,int>::const_iterator it=families.begin();it!=families.end();it++)
1456 id=std::max(id,(*it).second);
1459 std::vector<int> ret(nb);
1460 for(int i=1;i<=nb;i++)
1465 void MEDFileUMeshSplitL1::TraduceFamilyNumber(const std::vector< std::vector<int> >& fidsGrps, std::map<std::string,int>& familyIds,
1466 std::map<int,int>& famIdTrad, std::map<int,std::string>& newfams)
1468 std::set<int> allfids;
1472 void MEDFileUMeshSplitL1::computeRevNum() const
1475 int maxValue=_num->getMaxValue(pos);
1476 _rev_num=_num->invertArrayN2O2O2N(maxValue+1);
1481 MEDFileUMeshAggregateCompute::MEDFileUMeshAggregateCompute():_mp_time(0),_m_time(0)
1485 void MEDFileUMeshAggregateCompute::setName(const std::string& name)
1487 if(_m_time>=_mp_time)
1489 MEDCouplingUMesh *um(_m);
1493 if(_mp_time>=_m_time)
1495 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1497 MEDCoupling1GTUMesh *tmp(*it);
1504 void MEDFileUMeshAggregateCompute::assignParts(const std::vector< const MEDCoupling1GTUMesh * >& mParts)
1506 std::size_t sz(mParts.size());
1507 std::vector< MCAuto<MEDCoupling1GTUMesh> > ret(sz);
1508 for(std::size_t i=0;i<sz;i++)
1510 const MEDCoupling1GTUMesh *elt(mParts[i]);
1512 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::assignParts : presence of null pointer !");
1513 ret[i]=const_cast<MEDCoupling1GTUMesh *>(elt); elt->incrRef();
1516 _part_def.clear(); _part_def.resize(sz);
1517 _mp_time=std::max(_mp_time,_m_time)+1;
1521 void MEDFileUMeshAggregateCompute::assignDefParts(const std::vector<const PartDefinition *>& partDefs)
1523 if(_mp_time<_m_time)
1524 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::assignDefParts : the parts require a computation !");
1525 std::size_t sz(partDefs.size());
1526 if(_part_def.size()!=partDefs.size() || _part_def.size()!=_m_parts.size())
1527 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::assignDefParts : sizes of vectors of part definition mismatch !");
1528 for(std::size_t i=0;i<sz;i++)
1530 const PartDefinition *elt(partDefs[i]);
1533 _part_def[i]=const_cast<PartDefinition*>(elt);
1537 void MEDFileUMeshAggregateCompute::assignUMesh(MEDCouplingUMesh *m)
1541 _m_time=std::max(_mp_time,_m_time)+1;
1544 MEDCouplingUMesh *MEDFileUMeshAggregateCompute::getUmesh() const
1546 if(_mp_time<=_m_time)
1548 std::vector< const MEDCoupling1GTUMesh *> mp(_m_parts.size());
1549 std::copy(_m_parts.begin(),_m_parts.end(),mp.begin());
1550 _m=MEDCoupling1GTUMesh::AggregateOnSameCoordsToUMesh(mp);
1551 _m_parts.clear();//to avoid memory peak !
1552 _m_time=_mp_time+1;//+1 is important ! That is to say that only _m is OK not _m_parts because cleared !
1556 int MEDFileUMeshAggregateCompute::getNumberOfCells() const
1558 if(_mp_time<=_m_time)
1559 return _m->getNumberOfCells();
1561 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1562 ret+=(*it)->getNumberOfCells();
1566 std::vector<INTERP_KERNEL::NormalizedCellType> MEDFileUMeshAggregateCompute::getGeoTypes() const
1568 if(_mp_time>=_m_time)
1570 std::size_t sz(_m_parts.size());
1571 std::vector<INTERP_KERNEL::NormalizedCellType> ret(sz);
1572 for(std::size_t i=0;i<sz;i++)
1573 ret[i]=_m_parts[i]->getCellModelEnum();
1577 return _m->getAllGeoTypesSorted();
1580 int MEDFileUMeshAggregateCompute::getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType ct) const
1582 if(_mp_time>=_m_time)
1584 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1586 const MEDCoupling1GTUMesh *elt(*it);
1587 if(elt && elt->getCellModelEnum()==ct)
1588 return elt->getNumberOfCells();
1593 return _m->getNumberOfCellsWithType(ct);
1596 std::vector<MEDCoupling1GTUMesh *> MEDFileUMeshAggregateCompute::retrievePartsWithoutComputation() const
1598 if(_mp_time<_m_time)
1599 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartsWithoutComputation : the parts require a computation !");
1601 std::vector<MEDCoupling1GTUMesh *> ret(_m_parts.size());
1603 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++,i++)
1605 const MEDCoupling1GTUMesh *elt(*it);
1606 ret[i]=const_cast<MEDCoupling1GTUMesh *>(elt);
1611 std::vector<MEDCoupling1GTUMesh *> MEDFileUMeshAggregateCompute::getParts() const
1613 if(_mp_time<_m_time)
1614 forceComputationOfPartsFromUMesh();
1615 return retrievePartsWithoutComputation();
1618 MEDCoupling1GTUMesh *MEDFileUMeshAggregateCompute::retrievePartWithoutComputation(INTERP_KERNEL::NormalizedCellType gt) const
1620 std::vector<MEDCoupling1GTUMesh *> v(retrievePartsWithoutComputation());
1621 std::size_t sz(v.size());
1622 for(std::size_t i=0;i<sz;i++)
1625 if(v[i]->getCellModelEnum()==gt)
1628 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartWithoutComputation : the geometric type is not existing !");
1631 void MEDFileUMeshAggregateCompute::getStartStopOfGeoTypeWithoutComputation(INTERP_KERNEL::NormalizedCellType gt, int& start, int& stop) const
1634 std::vector<MEDCoupling1GTUMesh *> v(retrievePartsWithoutComputation());
1635 std::size_t sz(v.size());
1636 for(std::size_t i=0;i<sz;i++)
1640 if(v[i]->getCellModelEnum()==gt)
1642 stop=start+v[i]->getNumberOfCells();
1646 start+=v[i]->getNumberOfCells();
1649 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getStartStopOfGeoTypeWithoutComputation : the geometric type is not existing !");
1652 void MEDFileUMeshAggregateCompute::renumberNodesInConnWithoutComputation(const int *newNodeNumbersO2N)
1654 if(_mp_time>_m_time)
1656 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1658 MEDCoupling1GTUMesh *m(*it);
1660 m->renumberNodesInConn(newNodeNumbersO2N);
1665 MEDCouplingUMesh *m(getUmesh());
1668 m->renumberNodesInConn(newNodeNumbersO2N);
1672 void MEDFileUMeshAggregateCompute::forceComputationOfPartsFromUMesh() const
1674 const MEDCouplingUMesh *m(_m);
1677 if(_m_parts.empty())
1678 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::forceComputationOfPartsFromUMesh : null UMesh !");
1680 return ;// no needs to compte parts they are already here !
1682 std::vector<MEDCouplingUMesh *> ms(m->splitByType());
1683 std::vector< MCAuto<MEDCouplingUMesh> > msMSafe(ms.begin(),ms.end());
1684 std::size_t sz(msMSafe.size());
1685 _m_parts.resize(sz);
1686 for(std::size_t i=0;i<sz;i++)
1687 _m_parts[i]=MEDCoupling1GTUMesh::New(ms[i]);
1689 _part_def.resize(_m_parts.size());
1690 _mp_time=std::max(_mp_time,_m_time);
1693 const PartDefinition *MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation(INTERP_KERNEL::NormalizedCellType gt) const
1695 if(_mp_time<_m_time)
1696 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation : the parts require a computation !");
1697 if(_m_parts.size()!=_part_def.size())
1698 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation : size of arrays are expected to be the same !");
1699 std::size_t sz(_m_parts.size());
1700 for(std::size_t i=0;i<sz;i++)
1702 const MEDCoupling1GTUMesh *mesh(_m_parts[i]);
1704 if(mesh->getCellModelEnum()==gt)
1705 return _part_def[i];
1707 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation : The input geo type is not existing in this !");
1710 void MEDFileUMeshAggregateCompute::serialize(std::vector<int>& tinyInt, std::vector< MCAuto<DataArrayInt> >& bigArraysI) const
1712 if(_mp_time<_m_time)
1713 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : the parts require a computation !");
1714 std::size_t sz(_m_parts.size());
1715 tinyInt.push_back((int)sz);
1716 for(std::size_t i=0;i<sz;i++)
1718 const MEDCoupling1GTUMesh *mesh(_m_parts[i]);
1720 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : one part is empty !");
1721 tinyInt.push_back(mesh->getCellModelEnum());
1722 const MEDCoupling1SGTUMesh *mesh1(dynamic_cast<const MEDCoupling1SGTUMesh *>(mesh));
1723 const MEDCoupling1DGTUMesh *mesh2(dynamic_cast<const MEDCoupling1DGTUMesh *>(mesh));
1726 DataArrayInt *elt(mesh1->getNodalConnectivity());
1729 MCAuto<DataArrayInt> elt1(elt);
1730 bigArraysI.push_back(elt1);
1734 DataArrayInt *elt1(mesh2->getNodalConnectivity()),*elt2(mesh2->getNodalConnectivityIndex());
1739 MCAuto<DataArrayInt> elt11(elt1),elt22(elt2);
1740 bigArraysI.push_back(elt11); bigArraysI.push_back(elt22);
1743 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : unrecognized single geo type mesh !");
1744 const PartDefinition *pd(_part_def[i]);
1746 tinyInt.push_back(-1);
1749 std::vector<int> tinyTmp;
1750 pd->serialize(tinyTmp,bigArraysI);
1751 tinyInt.push_back((int)tinyTmp.size());
1752 tinyInt.insert(tinyInt.end(),tinyTmp.begin(),tinyTmp.end());
1757 void MEDFileUMeshAggregateCompute::unserialize(const std::string& name, DataArrayDouble *coo, std::vector<int>& tinyInt, std::vector< MCAuto<DataArrayInt> >& bigArraysI)
1759 int nbParts(tinyInt.back()); tinyInt.pop_back();
1760 _part_def.clear(); _part_def.resize(nbParts);
1761 _m_parts.clear(); _m_parts.resize(nbParts);
1762 for(int i=0;i<nbParts;i++)
1764 INTERP_KERNEL::NormalizedCellType tp((INTERP_KERNEL::NormalizedCellType) tinyInt.back()); tinyInt.pop_back();
1765 MCAuto<MEDCoupling1GTUMesh> mesh(MEDCoupling1GTUMesh::New(name,tp));
1766 mesh->setCoords(coo);
1767 MEDCoupling1SGTUMesh *mesh1(dynamic_cast<MEDCoupling1SGTUMesh *>((MEDCoupling1GTUMesh *) mesh));
1768 MEDCoupling1DGTUMesh *mesh2(dynamic_cast<MEDCoupling1DGTUMesh *>((MEDCoupling1GTUMesh *) mesh));
1771 mesh1->setNodalConnectivity(bigArraysI.back()); bigArraysI.pop_back();
1775 MCAuto<DataArrayInt> elt0,elt1;
1776 elt0=bigArraysI.back(); bigArraysI.pop_back();
1777 elt1=bigArraysI.back(); bigArraysI.pop_back();
1778 mesh2->setNodalConnectivity(elt0,elt1);
1781 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::unserialize : unrecognized single geo type mesh !");
1783 int pdid(tinyInt.back()); tinyInt.pop_back();
1785 _part_def[i]=PartDefinition::Unserialize(tinyInt,bigArraysI);
1786 _mp_time=std::max(_mp_time,_m_time)+1;
1791 * This method returns true if \a this is stored split by type false if stored in a merged unstructured mesh.
1793 bool MEDFileUMeshAggregateCompute::isStoredSplitByType() const
1795 return _mp_time>=_m_time;
1798 std::size_t MEDFileUMeshAggregateCompute::getTimeOfThis() const
1800 if(_mp_time>_m_time)
1801 return getTimeOfParts();
1802 if(_m_time>_mp_time)
1803 return getTimeOfUMesh();
1804 return std::max(getTimeOfParts(),getTimeOfUMesh());
1807 std::size_t MEDFileUMeshAggregateCompute::getTimeOfParts() const
1810 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1812 const MEDCoupling1GTUMesh *elt(*it);
1814 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getTimeOfParts : null obj in parts !");
1815 ret=std::max(ret,elt->getTimeOfThis());
1818 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getTimeOfParts : parts is empty !");
1822 std::size_t MEDFileUMeshAggregateCompute::getTimeOfUMesh() const
1824 const MEDCouplingUMesh *m(_m);
1826 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getTimeOfUMesh : unmesh is null !");
1827 return m->getTimeOfThis();
1830 std::size_t MEDFileUMeshAggregateCompute::getHeapMemorySizeWithoutChildren() const
1832 std::size_t ret(_m_parts.size()*sizeof(MCAuto<MEDCoupling1GTUMesh>));
1836 std::vector<const BigMemoryObject *> MEDFileUMeshAggregateCompute::getDirectChildrenWithNull() const
1838 std::vector<const BigMemoryObject *> ret;
1839 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1840 ret.push_back((const MEDCoupling1GTUMesh *)*it);
1841 ret.push_back((const MEDCouplingUMesh *)_m);
1845 MEDFileUMeshAggregateCompute MEDFileUMeshAggregateCompute::deepCopy(DataArrayDouble *coords) const
1847 MEDFileUMeshAggregateCompute ret;
1848 ret._m_parts.resize(_m_parts.size());
1849 for(std::size_t i=0;i<_m_parts.size();i++)
1851 const MEDCoupling1GTUMesh *elt(_m_parts[i]);
1854 ret._m_parts[i]=static_cast<MEDCoupling::MEDCoupling1GTUMesh*>(elt->deepCopy());
1855 ret._m_parts[i]->setCoords(coords);
1858 ret._mp_time=_mp_time; ret._m_time=_m_time;
1859 if((const MEDCouplingUMesh *)_m)
1861 ret._m=static_cast<MEDCoupling::MEDCouplingUMesh*>(_m->deepCopy());
1862 ret._m->setCoords(coords);
1864 std::size_t sz(_part_def.size());
1865 ret._part_def.clear(); ret._part_def.resize(sz);
1866 for(std::size_t i=0;i<sz;i++)
1868 const PartDefinition *elt(_part_def[i]);
1870 ret._part_def[i]=elt->deepCopy();
1875 void MEDFileUMeshAggregateCompute::shallowCpyMeshes()
1877 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1879 const MEDCoupling1GTUMesh *elt(*it);
1882 MCAuto<MEDCouplingMesh> elt2(elt->clone(false));
1883 *it=DynamicCastSafe<MEDCouplingMesh,MEDCoupling1GTUMesh>(elt2);
1886 const MEDCouplingUMesh *m(_m);
1891 bool MEDFileUMeshAggregateCompute::isEqual(const MEDFileUMeshAggregateCompute& other, double eps, std::string& what) const
1893 const MEDCouplingUMesh *m1(getUmesh());
1894 const MEDCouplingUMesh *m2(other.getUmesh());
1895 if((m1==0 && m2!=0) || (m1!=0 && m2==0))
1897 what="Presence of mesh in one sublevel and not in other!";
1903 if(!m1->isEqualIfNotWhy(m2,eps,what2))
1905 what=std::string("meshes at a sublevel are not deeply equal (")+what2+std::string(")!");
1909 std::size_t sz(_part_def.size());
1910 if(sz!=other._part_def.size())
1912 what=std::string("number of subdivision per geo type for part definition is not the same !");
1915 for(std::size_t i=0;i<sz;i++)
1917 const PartDefinition *pd0(_part_def[i]),*pd1(other._part_def[i]);
1920 if((!pd0 && pd1) || (pd0 && !pd1))
1922 what=std::string("a cell part def is defined only for one among this or other !");
1925 bool ret(pd0->isEqual(pd1,what));
1932 void MEDFileUMeshAggregateCompute::checkConsistency() const
1934 if(_mp_time >= _m_time)
1935 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();
1936 it!=_m_parts.end(); it++)
1937 (*it)->checkConsistency();
1939 _m->checkConsistency();
1942 void MEDFileUMeshAggregateCompute::clearNonDiscrAttributes() const
1944 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1945 MEDFileUMeshSplitL1::ClearNonDiscrAttributes(*it);
1946 MEDFileUMeshSplitL1::ClearNonDiscrAttributes(_m);
1949 void MEDFileUMeshAggregateCompute::synchronizeTinyInfo(const MEDFileMesh& master) const
1951 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1953 const MEDCoupling1GTUMesh *tmp(*it);
1956 (const_cast<MEDCoupling1GTUMesh *>(tmp))->setName(master.getName().c_str());
1957 (const_cast<MEDCoupling1GTUMesh *>(tmp))->setDescription(master.getDescription().c_str());
1958 (const_cast<MEDCoupling1GTUMesh *>(tmp))->setTime(master.getTimeValue(),master.getIteration(),master.getOrder());
1959 (const_cast<MEDCoupling1GTUMesh *>(tmp))->setTimeUnit(master.getTimeUnit());
1962 const MEDCouplingUMesh *m(_m);
1965 (const_cast<MEDCouplingUMesh *>(m))->setName(master.getName().c_str());
1966 (const_cast<MEDCouplingUMesh *>(m))->setDescription(master.getDescription().c_str());
1967 (const_cast<MEDCouplingUMesh *>(m))->setTime(master.getTimeValue(),master.getIteration(),master.getOrder());
1968 (const_cast<MEDCouplingUMesh *>(m))->setTimeUnit(master.getTimeUnit());
1972 bool MEDFileUMeshAggregateCompute::empty() const
1974 if(_mp_time<_m_time)
1975 return ((const MEDCouplingUMesh *)_m)==0;
1976 //else _mp_time>=_m_time)
1977 return _m_parts.empty();
1980 int MEDFileUMeshAggregateCompute::getMeshDimension() const
1982 if(_mp_time<_m_time)
1984 const MEDCouplingUMesh *m(_m);
1986 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getMeshDimension : no umesh in this !");
1987 return m->getMeshDimension();
1991 if(_m_parts.empty())
1992 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getMeshDimension : part mesh is empty !");
1993 const MEDCoupling1GTUMesh *m(_m_parts[0]);
1995 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getMeshDimension : part mesh contains null instance !");
1996 return m->getMeshDimension();
2000 std::vector<int> MEDFileUMeshAggregateCompute::getDistributionOfTypes() const
2002 if(_mp_time<_m_time)
2004 const MEDCouplingUMesh *m(_m);
2006 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getDistributionOfTypes : no umesh in this !");
2007 return m->getDistributionOfTypes();
2011 std::vector<int> ret;
2012 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
2014 const MEDCoupling1GTUMesh *tmp(*it);
2016 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getDistributionOfTypes : part mesh contains null instance !");
2017 std::vector<int> ret0(tmp->getDistributionOfTypes());
2018 ret.insert(ret.end(),ret0.begin(),ret0.end());
2024 int MEDFileUMeshAggregateCompute::getSize() const
2026 if(_mp_time<_m_time)
2028 const MEDCouplingUMesh *m(_m);
2030 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getSize : no umesh in this !");
2031 return m->getNumberOfCells();
2036 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
2038 const MEDCoupling1GTUMesh *m(*it);
2040 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getSize : part mesh contains null instance !");
2041 ret+=m->getNumberOfCells();
2047 void MEDFileUMeshAggregateCompute::setCoords(DataArrayDouble *coords)
2049 for(std::vector< MCAuto<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
2051 MEDCoupling1GTUMesh *tmp(*it);
2053 (*it)->setCoords(coords);
2055 MEDCouplingUMesh *m(_m);
2057 m->setCoords(coords);
2060 MEDFileEltStruct4Mesh *MEDFileEltStruct4Mesh::New(med_idt fid, const std::string& mName, int dt, int it, int iterOnStEltOfMesh, MEDFileMeshReadSelector *mrs)
2062 return new MEDFileEltStruct4Mesh(fid,mName,dt,it,iterOnStEltOfMesh,mrs);
2065 std::size_t MEDFileEltStruct4Mesh::getHeapMemorySizeWithoutChildren() const
2067 return _geo_type_name.capacity();
2070 std::vector<const MEDCoupling::BigMemoryObject*> MEDFileEltStruct4Mesh::getDirectChildrenWithNull() const
2072 std::vector<const MEDCoupling::BigMemoryObject*> ret;
2073 ret.push_back(_conn);
2074 ret.push_back(_common);
2078 MEDFileEltStruct4Mesh::MEDFileEltStruct4Mesh(med_idt fid, const std::string& mName, int dt, int it, int iterOnStEltOfMesh, MEDFileMeshReadSelector *mrs)
2080 med_geometry_type geoType;
2081 INTERP_KERNEL::AutoPtr<char> geoTypeName(MEDLoaderBase::buildEmptyString(MED_NAME_SIZE));
2082 MEDFILESAFECALLERRD0(MEDmeshEntityInfo,(fid,mName.c_str(),dt,it,MED_STRUCT_ELEMENT,iterOnStEltOfMesh+1,geoTypeName,&geoType));
2084 _geo_type_name=MEDLoaderBase::buildStringFromFortran(geoTypeName,MED_NAME_SIZE);
2087 med_bool chgt=MED_FALSE,trsf=MED_FALSE;
2088 nCells=MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_STRUCT_ELEMENT,geoType,MED_CONNECTIVITY,MED_NODAL,&chgt,&trsf);
2090 MCAuto<MEDFileMeshSupports> mss(MEDFileMeshSupports::New(fid));
2091 MCAuto<MEDFileStructureElements> mse(MEDFileStructureElements::New(fid,mss));
2092 int nbOfNodesPerCell(mse->getNumberOfNodesPerCellOf(_geo_type_name));
2093 _conn=DataArrayInt::New(); _conn->alloc(nCells,nbOfNodesPerCell);
2094 MEDFILESAFECALLERRD0(MEDmeshElementConnectivityRd,(fid,mName.c_str(),dt,it,MED_STRUCT_ELEMENT,_geo_type,MED_NODAL,MED_FULL_INTERLACE,_conn->getPointer()));
2095 _common=MEDFileUMeshPerTypeCommon::New();
2096 _common->loadCommonPart(fid,mName.c_str(),dt,it,nCells,geoType,MED_STRUCT_ELEMENT,mrs);
2097 //MEDFILESAFECALLERRD0(MEDmeshElementRd,(mName.c_str(),dt,it,MED_STRUCT_ELEMENT,geoType,MED_NODAL,MED_FULL_INTERLACE,conn,));