1 // Copyright (C) 2007-2015 CEA/DEN, EDF R&D
3 // This library is free software; you can redistribute it and/or
4 // modify it under the terms of the GNU Lesser General Public
5 // License as published by the Free Software Foundation; either
6 // version 2.1 of the License, or (at your option) any later version.
8 // This library is distributed in the hope that it will be useful,
9 // but WITHOUT ANY WARRANTY; without even the implied warranty of
10 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
11 // Lesser General Public License for more details.
13 // You should have received a copy of the GNU Lesser General Public
14 // License along with this library; if not, write to the Free Software
15 // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
17 // See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
19 // Author : Anthony Geay (CEA/DEN)
21 #include "MEDFileMeshLL.hxx"
22 #include "MEDFileMesh.hxx"
23 #include "MEDLoaderBase.hxx"
24 #include "MEDFileSafeCaller.txx"
25 #include "MEDFileMeshReadSelector.hxx"
27 #include "MEDCouplingUMesh.hxx"
29 #include "InterpKernelAutoPtr.hxx"
30 #include "CellModel.hxx"
35 extern med_geometry_type typmai[MED_N_CELL_FIXED_GEO];
36 extern INTERP_KERNEL::NormalizedCellType typmai2[MED_N_CELL_FIXED_GEO];
37 extern med_geometry_type typmainoeud[1];
39 using namespace ParaMEDMEM;
41 const char MEDFileMeshL2::ZE_SEP_FOR_FAMILY_KILLERS[]="!/__\\!";//important start by - because ord('!')==33 the smallest (!=' ') to preserve orders at most.
43 int MEDFileMeshL2::ZE_SEP2_FOR_FAMILY_KILLERS=4;
45 MEDFileMeshL2::MEDFileMeshL2():_name(MED_NAME_SIZE),_description(MED_COMMENT_SIZE),_univ_name(MED_LNAME_SIZE),_dt_unit(MED_LNAME_SIZE)
49 std::size_t MEDFileMeshL2::getHeapMemorySizeWithoutChildren() const
54 std::vector<const BigMemoryObject *> MEDFileMeshL2::getDirectChildrenWithNull() const
56 return std::vector<const BigMemoryObject *>();
59 int MEDFileMeshL2::GetMeshIdFromName(med_idt fid, const std::string& mname, ParaMEDMEM::MEDCouplingMeshType& meshType, int& dt, int& it, std::string& dtunit1)
61 med_mesh_type type_maillage;
62 char maillage_description[MED_COMMENT_SIZE+1];
63 char dtunit[MED_LNAME_SIZE+1];
65 char nommaa[MED_NAME_SIZE+1];
66 med_int n=MEDnMesh(fid);
69 med_sorting_type stype;
70 std::vector<std::string> ms;
72 med_axis_type axistype;
73 for(int i=0;i<n && !found;i++)
75 int naxis(MEDmeshnAxis(fid,i+1));
76 INTERP_KERNEL::AutoPtr<char> axisname=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
77 INTERP_KERNEL::AutoPtr<char> axisunit=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
78 MEDFILESAFECALLERRD0(MEDmeshInfo,(fid,i+1,nommaa,&spaceDim,&dim,&type_maillage,maillage_description,dtunit,&stype,&nstep,&axistype,axisname,axisunit));
79 dtunit1=MEDLoaderBase::buildStringFromFortran(dtunit,sizeof(dtunit));
80 std::string cur=MEDLoaderBase::buildStringFromFortran(nommaa,sizeof(nommaa));
90 std::ostringstream oss;
91 oss << "No such meshname (" << mname << ") in file ! Must be in : ";
92 std::copy(ms.begin(),ms.end(),std::ostream_iterator<std::string>(oss,", "));
93 throw INTERP_KERNEL::Exception(oss.str().c_str());
97 case MED_UNSTRUCTURED_MESH:
98 meshType=UNSTRUCTURED;
100 case MED_STRUCTURED_MESH:
103 MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mname.c_str(),>));
106 case MED_CARTESIAN_GRID:
109 case MED_CURVILINEAR_GRID:
110 meshType=CURVE_LINEAR;
113 throw INTERP_KERNEL::Exception("MEDFileUMeshL2::getMeshIdFromName : unrecognized structured mesh type ! Supported are :\n - cartesian\n - curve linear\n");
118 throw INTERP_KERNEL::Exception("MEDFileUMeshL2::getMeshIdFromName : unrecognized mesh type !");
122 MEDFILESAFECALLERRD0(MEDmeshComputationStepInfo,(fid,mname.c_str(),1,&numdt,&numit,&dtt));
127 double MEDFileMeshL2::CheckMeshTimeStep(med_idt fid, const std::string& mName, int nstep, int dt, int it)
132 std::vector< std::pair<int,int> > p(nstep);
133 for(int i=0;i<nstep;i++)
135 MEDFILESAFECALLERRD0(MEDmeshComputationStepInfo,(fid,mName.c_str(),i+1,&numdt,&numit,&dtt));
136 p[i]=std::make_pair(numdt,numit);
137 found=(numdt==dt) && (numit==numit);
141 std::ostringstream oss; oss << "No such iteration=" << dt << ",order=" << it << " numbers found for mesh '" << mName << "' ! ";
142 oss << "Possibilities are : ";
143 for(int i=0;i<nstep;i++)
144 oss << "(" << p[i].first << "," << p[i].second << "), ";
145 throw INTERP_KERNEL::Exception(oss.str().c_str());
150 std::vector<std::string> MEDFileMeshL2::getAxisInfoOnMesh(med_idt fid, int mId, const std::string& mName, ParaMEDMEM::MEDCouplingMeshType& meshType, int& nstep, int& Mdim)
152 med_mesh_type type_maillage;
154 med_sorting_type stype;
155 med_axis_type axistype;
156 int naxis(MEDmeshnAxis(fid,mId));
157 INTERP_KERNEL::AutoPtr<char> nameTmp=MEDLoaderBase::buildEmptyString(MED_NAME_SIZE);
158 INTERP_KERNEL::AutoPtr<char> axisname=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
159 INTERP_KERNEL::AutoPtr<char> axisunit=MEDLoaderBase::buildEmptyString(naxis*MED_SNAME_SIZE);
160 INTERP_KERNEL::AutoPtr<char> univTmp=MEDLoaderBase::buildEmptyString(MED_LNAME_SIZE);
161 if(MEDmeshInfo(fid,mId,nameTmp,&spaceDim,&Mdim,&type_maillage,_description.getPointer(),_dt_unit.getPointer(),
162 &stype,&nstep,&axistype,axisname,axisunit)!=0)
163 throw INTERP_KERNEL::Exception("A problem has been detected when trying to get info on mesh !");
164 MEDmeshUniversalNameRd(fid,nameTmp,_univ_name.getPointer());// do not protect MEDFILESAFECALLERRD0 call : Thanks to fra.med.
165 switch(type_maillage)
167 case MED_UNSTRUCTURED_MESH:
168 meshType=UNSTRUCTURED;
170 case MED_STRUCTURED_MESH:
173 MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mName.c_str(),>));
176 case MED_CARTESIAN_GRID:
179 case MED_CURVILINEAR_GRID:
180 meshType=CURVE_LINEAR;
183 throw INTERP_KERNEL::Exception("MEDFileUMeshL2::getAxisInfoOnMesh : unrecognized structured mesh type ! Supported are :\n - cartesian\n - curve linear\n");
188 throw INTERP_KERNEL::Exception("MEDFileUMeshL2::getMeshIdFromName : unrecognized mesh type !");
191 std::vector<std::string> infosOnComp(naxis);
192 for(int i=0;i<naxis;i++)
194 std::string info=MEDLoaderBase::buildUnionUnit(((char *)axisname)+i*MED_SNAME_SIZE,MED_SNAME_SIZE,((char *)axisunit)+i*MED_SNAME_SIZE,MED_SNAME_SIZE);
200 void MEDFileMeshL2::ReadFamiliesAndGrps(med_idt fid, const std::string& meshName, std::map<std::string,int>& fams, std::map<std::string, std::vector<std::string> >& grps, MEDFileMeshReadSelector *mrs)
202 if(mrs && !(mrs->isCellFamilyFieldReading() || mrs->isNodeFamilyFieldReading()))
204 char nomfam[MED_NAME_SIZE+1];
206 int nfam=MEDnFamily(fid,meshName.c_str());
207 std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > > crudeFams(nfam);
208 for(int i=0;i<nfam;i++)
210 int ngro=MEDnFamilyGroup(fid,meshName.c_str(),i+1);
211 med_int natt=MEDnFamily23Attribute(fid,meshName.c_str(),i+1);
212 INTERP_KERNEL::AutoPtr<med_int> attide=new med_int[natt];
213 INTERP_KERNEL::AutoPtr<med_int> attval=new med_int[natt];
214 INTERP_KERNEL::AutoPtr<char> attdes=new char[MED_COMMENT_SIZE*natt+1];
215 INTERP_KERNEL::AutoPtr<char> gro=new char[MED_LNAME_SIZE*ngro+1];
216 MEDfamily23Info(fid,meshName.c_str(),i+1,nomfam,attide,attval,attdes,&numfam,gro);
217 std::string famName(MEDLoaderBase::buildStringFromFortran(nomfam,MED_NAME_SIZE));
218 std::vector<std::string> grps(ngro);
219 for(int j=0;j<ngro;j++)
220 grps[j]=MEDLoaderBase::buildStringFromFortran(gro+j*MED_LNAME_SIZE,MED_LNAME_SIZE);
221 crudeFams[i]=std::pair<std::string,std::pair<int,std::vector<std::string> > >(famName,std::pair<int,std::vector<std::string> >(numfam,grps));
223 RenameFamiliesFromFileToMemInternal(crudeFams);
224 for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::const_iterator it0=crudeFams.begin();it0!=crudeFams.end();it0++)
226 fams[(*it0).first]=(*it0).second.first;
227 for(std::vector<std::string>::const_iterator it1=(*it0).second.second.begin();it1!=(*it0).second.second.end();it1++)
228 grps[*it1].push_back((*it0).first);
232 void MEDFileMeshL2::WriteFamiliesAndGrps(med_idt fid, const std::string& mname, const std::map<std::string,int>& fams, const std::map<std::string, std::vector<std::string> >& grps, int tooLongStrPol)
234 std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > > crudeFams(fams.size());
236 for(std::map<std::string,int>::const_iterator it=fams.begin();it!=fams.end();it++,ii++)
238 std::vector<std::string> grpsOfFam;
239 for(std::map<std::string, std::vector<std::string> >::const_iterator it1=grps.begin();it1!=grps.end();it1++)
241 if(std::find((*it1).second.begin(),(*it1).second.end(),(*it).first)!=(*it1).second.end())
242 grpsOfFam.push_back((*it1).first);
244 crudeFams[ii]=std::pair<std::string,std::pair<int,std::vector<std::string> > >((*it).first,std::pair<int,std::vector<std::string> >((*it).second,grpsOfFam));
246 RenameFamiliesFromMemToFileInternal(crudeFams);
247 for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::const_iterator it=crudeFams.begin();it!=crudeFams.end();it++)
249 int ngro((*it).second.second.size());
250 INTERP_KERNEL::AutoPtr<char> groName=MEDLoaderBase::buildEmptyString(MED_LNAME_SIZE*ngro);
252 for(std::vector<std::string>::const_iterator it2=(*it).second.second.begin();it2!=(*it).second.second.end();it2++,i++)
253 MEDLoaderBase::safeStrCpy2((*it2).c_str(),MED_LNAME_SIZE-1,groName+i*MED_LNAME_SIZE,tooLongStrPol);
254 INTERP_KERNEL::AutoPtr<char> famName=MEDLoaderBase::buildEmptyString(MED_NAME_SIZE);
255 MEDLoaderBase::safeStrCpy((*it).first.c_str(),MED_NAME_SIZE,famName,tooLongStrPol);
256 int ret=MEDfamilyCr(fid,mname.c_str(),famName,(*it).second.first,ngro,groName);
261 void MEDFileMeshL2::RenameFamiliesPatternInternal(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >& crudeFams, RenameFamiliesPatternFunc func)
264 std::vector<std::string> fams(crudeFams.size());
265 for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::const_iterator it=crudeFams.begin();it!=crudeFams.end();it++,ii++)
266 fams[ii]=(*it).first;
270 for(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >::iterator it=crudeFams.begin();it!=crudeFams.end();it++,ii++)
271 (*it).first=fams[ii];
275 * This method is dedicated to the killers that use a same family name to store different family ids. MED file API authorizes it.
276 * So this method renames families (if needed generaly not !) in order to have a discriminant name for families.
278 void MEDFileMeshL2::RenameFamiliesFromFileToMemInternal(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >& crudeFams)
280 RenameFamiliesPatternInternal(crudeFams,RenameFamiliesFromFileToMem);
283 bool MEDFileMeshL2::RenameFamiliesFromFileToMem(std::vector< std::string >& famNames)
285 std::map<std::string,int> m;
286 std::set<std::string> s;
287 for(std::vector< std::string >::const_iterator it=famNames.begin();it!=famNames.end();it++)
289 if(s.find(*it)!=s.end())
294 return false;// the general case !
295 for(std::vector< std::string >::iterator it=famNames.begin();it!=famNames.end();it++)
297 std::map<std::string,int>::iterator it2(m.find(*it));
300 std::ostringstream oss; oss << *it << ZE_SEP_FOR_FAMILY_KILLERS << std::setfill('0') << std::setw(ZE_SEP2_FOR_FAMILY_KILLERS) << (*it2).second++;
308 * This method is dedicated to the killers that use a same family name to store different family ids. MED file API authorizes it.
309 * So this method renames families (if needed generaly not !) in order to have a discriminant name for families.
311 void MEDFileMeshL2::RenameFamiliesFromMemToFileInternal(std::vector< std::pair<std::string,std::pair<int,std::vector<std::string> > > >& crudeFams)
313 RenameFamiliesPatternInternal(crudeFams,RenameFamiliesFromMemToFile);
316 bool MEDFileMeshL2::RenameFamiliesFromMemToFile(std::vector< std::string >& famNames)
318 bool isSmthingStrange(false);
319 for(std::vector< std::string >::const_iterator it=famNames.begin();it!=famNames.end();it++)
321 std::size_t found((*it).find(ZE_SEP_FOR_FAMILY_KILLERS));
322 if(found!=std::string::npos)
323 isSmthingStrange=true;
325 if(!isSmthingStrange)
328 std::map< std::string, std::vector<std::string> > m;
329 for(std::vector< std::string >::const_iterator it=famNames.begin();it!=famNames.end();it++)
331 std::size_t found((*it).find(ZE_SEP_FOR_FAMILY_KILLERS));
332 if(found!=std::string::npos && found>=1)
334 std::string s1((*it).substr(found+sizeof(ZE_SEP_FOR_FAMILY_KILLERS)-1));
335 if(s1.size()!=ZE_SEP2_FOR_FAMILY_KILLERS)
338 std::istringstream iss(s1);
340 bool isOK((iss.rdstate() & ( std::istream::failbit | std::istream::eofbit)) == std::istream::eofbit);
343 std::string s0((*it).substr(0,found));
344 m[s0].push_back(*it);
351 std::map<std::string,std::string> zeMap;
352 for(std::map< std::string, std::vector<std::string> >::const_iterator it=m.begin();it!=m.end();it++)
354 if((*it).second.size()==1)
356 for(std::vector<std::string>::const_iterator it1=(*it).second.begin();it1!=(*it).second.end();it1++)
357 zeMap[*it1]=(*it).first;
362 for(std::vector< std::string >::iterator it=famNames.begin();it!=famNames.end();it++)
364 std::map<std::string,std::string>::iterator it1(zeMap.find(*it));
372 MEDFileUMeshL2::MEDFileUMeshL2()
376 std::vector<std::string> MEDFileUMeshL2::loadCommonPart(med_idt fid, int mId, const std::string& mName, int dt, int it, int& Mdim)
379 _name.set(mName.c_str());
381 ParaMEDMEM::MEDCouplingMeshType meshType;
382 std::vector<std::string> ret(getAxisInfoOnMesh(fid,mId,mName.c_str(),meshType,nstep,Mdim));
386 return std::vector<std::string>();
388 if(meshType!=UNSTRUCTURED)
389 throw INTERP_KERNEL::Exception("Invalid mesh type ! You are expected an unstructured one whereas in file it is not an unstructured !");
390 _time=CheckMeshTimeStep(fid,mName,nstep,dt,it);
396 void MEDFileUMeshL2::loadAll(med_idt fid, int mId, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
399 std::vector<std::string> infosOnComp(loadCommonPart(fid,mId,mName,dt,it,Mdim));
402 loadConnectivity(fid,Mdim,mName,dt,it,mrs);//to improve check (dt,it) coherency
403 loadCoords(fid,mId,infosOnComp,mName,dt,it);
406 void MEDFileUMeshL2::loadPart(med_idt fid, int mId, const std::string& mName, const std::vector<INTERP_KERNEL::NormalizedCellType>& types, const std::vector<int>& slicPerTyp, int dt, int it, MEDFileMeshReadSelector *mrs)
409 std::vector<std::string> infosOnComp(loadCommonPart(fid,mId,mName,dt,it,Mdim));
412 loadPartOfConnectivity(fid,Mdim,mName,types,slicPerTyp,dt,it,mrs);
413 med_bool changement,transformation;
414 int nCoords(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation));
415 std::vector<bool> fetchedNodeIds(nCoords,false);
416 for(std::vector< std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> > >::const_iterator it0=_per_type_mesh.begin();it0!=_per_type_mesh.end();it0++)
417 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it1=(*it0).begin();it1!=(*it0).end();it1++)
418 (*it1)->getMesh()->computeNodeIdsAlg(fetchedNodeIds);
419 int nMin(std::distance(fetchedNodeIds.begin(),std::find(fetchedNodeIds.begin(),fetchedNodeIds.end(),true)));
420 int nMax(std::distance(fetchedNodeIds.rbegin(),std::find(fetchedNodeIds.rbegin(),fetchedNodeIds.rend(),true)));
422 for(std::vector< std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> > >::const_iterator it0=_per_type_mesh.begin();it0!=_per_type_mesh.end();it0++)
423 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it1=(*it0).begin();it1!=(*it0).end();it1++)
424 (*it1)->getMesh()->renumberNodesWithOffsetInConn(-nMin);
425 loadPartCoords(fid,mId,infosOnComp,mName,dt,it,nMin,nMax);
428 void MEDFileUMeshL2::loadConnectivity(med_idt fid, int mdim, const std::string& mName, int dt, int it, MEDFileMeshReadSelector *mrs)
430 _per_type_mesh.resize(1);
431 _per_type_mesh[0].clear();
432 for(int j=0;j<MED_N_CELL_FIXED_GEO;j++)
434 MEDFileUMeshPerType *tmp(MEDFileUMeshPerType::New(fid,mName.c_str(),dt,it,mdim,typmai[j],typmai2[j],mrs));
436 _per_type_mesh[0].push_back(tmp);
441 void MEDFileUMeshL2::loadPartOfConnectivity(med_idt fid, int mdim, const std::string& mName, const std::vector<INTERP_KERNEL::NormalizedCellType>& types, const std::vector<int>& slicPerTyp, int dt, int it, MEDFileMeshReadSelector *mrs)
443 std::size_t nbOfTypes(types.size());
444 if(slicPerTyp.size()!=3*nbOfTypes)
445 throw INTERP_KERNEL::Exception("MEDFileUMeshL2::loadPartOfConnectivity : The size of slicPerTyp array is expected to be equal to 3 times size of array types !");
446 std::set<INTERP_KERNEL::NormalizedCellType> types2(types.begin(),types.end());
447 if(types2.size()!=nbOfTypes)
448 throw INTERP_KERNEL::Exception("MEDFileUMeshL2::loadPartOfConnectivity : the geometric types in types array must appear once !");
449 _per_type_mesh.resize(1);
450 _per_type_mesh[0].clear();
451 for(std::size_t ii=0;ii<nbOfTypes;ii++)
453 int strt(slicPerTyp[3*ii+0]),stp(slicPerTyp[3*ii+1]),step(slicPerTyp[3*ii+2]);
454 MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> tmp(MEDFileUMeshPerType::NewPart(fid,mName.c_str(),dt,it,mdim,types[ii],strt,stp,step,mrs));
455 _per_type_mesh[0].push_back(tmp);
460 void MEDFileUMeshL2::loadCoords(med_idt fid, int mId, const std::vector<std::string>& infosOnComp, const std::string& mName, int dt, int it)
462 int spaceDim((int)infosOnComp.size());
463 med_bool changement,transformation;
464 int nCoords(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation));
465 _coords=DataArrayDouble::New();
466 _coords->alloc(nCoords,spaceDim);
467 double *coordsPtr(_coords->getPointer());
469 MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateRd,(fid,mName.c_str(),dt,it,MED_FULL_INTERLACE,coordsPtr));
470 if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_FAMILY_NUMBER,MED_NODAL,&changement,&transformation)>0)
472 _fam_coords=DataArrayInt::New();
473 _fam_coords->alloc(nCoords,1);
474 MEDFILESAFECALLERRD0(MEDmeshEntityFamilyNumberRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_fam_coords->getPointer()));
478 if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NUMBER,MED_NODAL,&changement,&transformation)>0)
480 _num_coords=DataArrayInt::New();
481 _num_coords->alloc(nCoords,1);
482 MEDFILESAFECALLERRD0(MEDmeshEntityNumberRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_num_coords->getPointer()));
486 if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NAME,MED_NODAL,&changement,&transformation)>0)
488 _name_coords=DataArrayAsciiChar::New();
489 _name_coords->alloc(nCoords+1,MED_SNAME_SIZE);//not a bug to avoid the memory corruption due to last \0 at the end
490 MEDFILESAFECALLERRD0(MEDmeshEntityNameRd,(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,_name_coords->getPointer()));
491 _name_coords->reAlloc(nCoords);//not a bug to avoid the memory corruption due to last \0 at the end
495 for(int i=0;i<spaceDim;i++)
496 _coords->setInfoOnComponent(i,infosOnComp[i]);
499 void MEDFileUMeshL2::loadPartCoords(med_idt fid, int mId, const std::vector<std::string>& infosOnComp, const std::string& mName, int dt, int it, int nMin, int nMax)
501 med_bool changement,transformation;
502 int spaceDim((int)infosOnComp.size()),nCoords(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&changement,&transformation));
503 _coords=DataArrayDouble::New();
504 int nbNodesToLoad(nMax-nMin);
505 _coords->alloc(nbNodesToLoad,spaceDim);
506 med_filter filter=MED_FILTER_INIT,filter2=MED_FILTER_INIT;
507 MEDfilterBlockOfEntityCr(fid,/*nentity*/nCoords,/*nvaluesperentity*/1,/*nconstituentpervalue*/spaceDim,
508 MED_ALL_CONSTITUENT,MED_FULL_INTERLACE,MED_COMPACT_STMODE,MED_NO_PROFILE,
509 /*start*/nMin+1,/*stride*/1,/*count*/1,/*blocksize*/nbNodesToLoad,
510 /*lastblocksize=useless because count=1*/0,&filter);
511 MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateAdvancedRd,(fid,mName.c_str(),dt,it,&filter,_coords->getPointer()));
512 _part_coords=PartDefinition::New(nMin,nMax,1);
513 MEDfilterClose(&filter);
514 MEDfilterBlockOfEntityCr(fid,nCoords,1,1,MED_ALL_CONSTITUENT,MED_FULL_INTERLACE,MED_COMPACT_STMODE,
515 MED_NO_PROFILE,nMin+1,1,1,nbNodesToLoad,0,&filter2);
516 if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_FAMILY_NUMBER,MED_NODAL,&changement,&transformation)>0)
518 _fam_coords=DataArrayInt::New();
519 _fam_coords->alloc(nbNodesToLoad,1);
520 MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_FAMILY_NUMBER,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_fam_coords->getPointer()));
524 if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NUMBER,MED_NODAL,&changement,&transformation)>0)
526 _num_coords=DataArrayInt::New();
527 _num_coords->alloc(nbNodesToLoad,1);
528 MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_NUMBER,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_num_coords->getPointer()));
532 if(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,MED_NAME,MED_NODAL,&changement,&transformation)>0)
534 _name_coords=DataArrayAsciiChar::New();
535 _name_coords->alloc(nbNodesToLoad+1,MED_SNAME_SIZE);//not a bug to avoid the memory corruption due to last \0 at the end
536 MEDFILESAFECALLERRD0(MEDmeshEntityAttributeAdvancedRd,(fid,mName.c_str(),MED_NAME,dt,it,MED_NODE,MED_NO_GEOTYPE,&filter2,_name_coords->getPointer()));
537 _name_coords->reAlloc(nbNodesToLoad);//not a bug to avoid the memory corruption due to last \0 at the end
541 MEDfilterClose(&filter2);
542 _coords->setInfoOnComponents(infosOnComp);
545 void MEDFileUMeshL2::sortTypes()
548 std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> > tmp(_per_type_mesh[0]);
549 _per_type_mesh.clear();
550 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it=tmp.begin();it!=tmp.end();it++)
551 mdims.insert((*it)->getDim());
554 int mdim=*mdims.rbegin();
555 _per_type_mesh.resize(mdim+1);
556 for(int dim=mdim+1;dim!=0;dim--)
558 std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >& elt=_per_type_mesh[mdim+1-dim];
559 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it=tmp.begin();it!=tmp.end();it++)
560 if((*it)->getDim()==dim-1)
563 // suppression of contiguous empty levels at the end of _per_type_mesh.
564 int nbOfUselessLev=0;
566 for(std::vector< std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> > >::reverse_iterator it2=_per_type_mesh.rbegin();it2!=_per_type_mesh.rend();it2++)
568 if((*it2).empty() && isFirst)
575 _per_type_mesh.resize(_per_type_mesh.size()-nbOfUselessLev);
578 void MEDFileUMeshL2::WriteCoords(med_idt fid, const std::string& mname, int dt, int it, double time, const DataArrayDouble *coords, const DataArrayInt *famCoords, const DataArrayInt *numCoords, const DataArrayAsciiChar *nameCoords)
582 MEDFILESAFECALLERWR0(MEDmeshNodeCoordinateWr,(fid,mname.c_str(),dt,it,time,MED_FULL_INTERLACE,coords->getNumberOfTuples(),coords->getConstPointer()));
584 MEDFILESAFECALLERWR0(MEDmeshEntityFamilyNumberWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,famCoords->getNumberOfTuples(),famCoords->getConstPointer()));
586 MEDFILESAFECALLERWR0(MEDmeshEntityNumberWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,numCoords->getNumberOfTuples(),numCoords->getConstPointer()));
589 if(nameCoords->getNumberOfComponents()!=MED_SNAME_SIZE)
591 std::ostringstream oss; oss << " MEDFileUMeshL2::WriteCoords : expected a name field on nodes with number of components set to " << MED_SNAME_SIZE;
592 oss << " ! The array has " << nameCoords->getNumberOfComponents() << " components !";
593 throw INTERP_KERNEL::Exception(oss.str().c_str());
595 MEDFILESAFECALLERWR0(MEDmeshEntityNameWr,(fid,mname.c_str(),dt,it,MED_NODE,MED_NO_GEOTYPE,nameCoords->getNumberOfTuples(),nameCoords->getConstPointer()));
599 bool MEDFileUMeshL2::isFamDefinedOnLev(int levId) const
601 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
602 if((*it)->getFam()==0)
607 bool MEDFileUMeshL2::isNumDefinedOnLev(int levId) const
609 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
610 if((*it)->getNum()==0)
615 bool MEDFileUMeshL2::isNamesDefinedOnLev(int levId) const
617 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >::const_iterator it=_per_type_mesh[levId].begin();it!=_per_type_mesh[levId].end();it++)
618 if((*it)->getNames()==0)
623 MEDFileCMeshL2::MEDFileCMeshL2()
627 void MEDFileCMeshL2::loadAll(med_idt fid, int mId, const std::string& mName, int dt, int it)
629 _name.set(mName.c_str());
632 ParaMEDMEM::MEDCouplingMeshType meshType;
633 std::vector<std::string> infosOnComp=getAxisInfoOnMesh(fid,mId,mName.c_str(),meshType,nstep,Mdim);
634 if(meshType!=CARTESIAN)
635 throw INTERP_KERNEL::Exception("Invalid mesh type ! You are expected a structured one whereas in file it is not a structured !");
636 _time=CheckMeshTimeStep(fid,mName,nstep,dt,it);
640 med_grid_type gridtype;
641 MEDFILESAFECALLERRD0(MEDmeshGridTypeRd,(fid,mName.c_str(),&gridtype));
642 if(gridtype!=MED_CARTESIAN_GRID)
643 throw INTERP_KERNEL::Exception("Invalid structured mesh ! Expected cartesian mesh type !");
644 _cmesh=MEDCouplingCMesh::New();
645 for(int i=0;i<Mdim;i++)
647 med_data_type dataTypeReq=GetDataTypeCorrespondingToSpaceId(i);
648 med_bool chgt=MED_FALSE,trsf=MED_FALSE;
649 int nbOfElt(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,dataTypeReq,MED_NO_CMODE,&chgt,&trsf));
650 MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> da=DataArrayDouble::New();
651 da->alloc(nbOfElt,1);
652 da->setInfoOnComponent(0,infosOnComp[i]);
653 MEDFILESAFECALLERRD0(MEDmeshGridIndexCoordinateRd,(fid,mName.c_str(),dt,it,i+1,da->getPointer()));
654 _cmesh->setCoordsAt(i,da);
658 med_data_type MEDFileCMeshL2::GetDataTypeCorrespondingToSpaceId(int id)
663 return MED_COORDINATE_AXIS1;
665 return MED_COORDINATE_AXIS2;
667 return MED_COORDINATE_AXIS3;
669 throw INTERP_KERNEL::Exception("Invalid meshdim detected in Cartesian Grid !");
673 MEDFileCLMeshL2::MEDFileCLMeshL2()
677 void MEDFileCLMeshL2::loadAll(med_idt fid, int mId, const std::string& mName, int dt, int it)
679 _name.set(mName.c_str());
682 ParaMEDMEM::MEDCouplingMeshType meshType;
683 std::vector<std::string> infosOnComp=getAxisInfoOnMesh(fid,mId,mName,meshType,nstep,Mdim);
684 if(meshType!=CURVE_LINEAR)
685 throw INTERP_KERNEL::Exception("Invalid mesh type ! You are expected a structured one whereas in file it is not a structured !");
686 _time=CheckMeshTimeStep(fid,mName,nstep,dt,it);
690 _clmesh=MEDCouplingCurveLinearMesh::New();
691 INTERP_KERNEL::AutoPtr<int> stGrid=new int[Mdim];
692 MEDFILESAFECALLERRD0(MEDmeshGridStructRd,(fid,mName.c_str(),dt,it,stGrid));
693 _clmesh->setNodeGridStructure(stGrid,((int *)stGrid)+Mdim);
694 med_bool chgt=MED_FALSE,trsf=MED_FALSE;
695 int nbNodes(MEDmeshnEntity(fid,mName.c_str(),dt,it,MED_NODE,MED_NONE,MED_COORDINATE,MED_NO_CMODE,&chgt,&trsf));
696 MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> da=DataArrayDouble::New();
697 da->alloc(nbNodes,infosOnComp.size());
698 da->setInfoOnComponents(infosOnComp);
699 MEDFILESAFECALLERRD0(MEDmeshNodeCoordinateRd,(fid,mName.c_str(),dt,it,MED_FULL_INTERLACE,da->getPointer()));
700 _clmesh->setCoords(da);
703 MEDFileUMeshPermCompute::MEDFileUMeshPermCompute(const MEDFileUMeshSplitL1* st):_st(st),_mpt_time(0),_num_time(0)
708 * Warning it returns an instance to deallocate !!!!
710 MEDFileUMeshPermCompute::operator MEDCouplingUMesh *() const
712 _st->_num->updateTime();
713 if((MEDCouplingUMesh *)_m==0)
716 _m=static_cast<MEDCouplingUMesh *>(_st->_m_by_types.getUmesh()->deepCpy());
717 _m->renumberCells(_st->_num->getConstPointer(),true);
722 if(_mpt_time==_st->_m_by_types.getTimeOfThis() && _num_time==_st->_num->getTimeOfThis())
727 _m=static_cast<MEDCouplingUMesh *>(_st->_m_by_types.getUmesh()->deepCpy());
728 _m->renumberCells(_st->_num->getConstPointer(),true);
734 void MEDFileUMeshPermCompute::operator=(MEDCouplingUMesh *m)
739 void MEDFileUMeshPermCompute::updateTime() const
741 _mpt_time=_st->_m_by_types.getTimeOfThis();
742 _num_time=_st->_num->getTimeOfThis();
745 std::vector<const BigMemoryObject *> MEDFileUMeshPermCompute::getDirectChildrenWithNull() const
747 std::vector<const BigMemoryObject *> ret;
748 ret.push_back((const MEDCouplingUMesh *)_m);
752 std::size_t MEDFileUMeshPermCompute::getHeapMemorySizeWithoutChildren() const
754 return sizeof(MEDFileUMeshPermCompute);
757 MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(const MEDFileUMeshSplitL1& other):RefCountObject(other),_m_by_types(other._m_by_types),_fam(other._fam),_num(other._num),_names(other._names),_rev_num(other._rev_num),_m(this)
761 MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(const MEDFileUMeshL2& l2, const std::string& mName, int id):_m(this)
763 const std::vector< MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshPerType> >& v=l2.getLev(id);
767 std::vector<const MEDCoupling1GTUMesh *> ms(sz);
768 std::vector<const DataArrayInt *> fams(sz),nums(sz);
769 std::vector<const DataArrayChar *> names(sz);
770 std::vector<const PartDefinition *> pds(sz);
771 for(int i=0;i<sz;i++)
773 MEDCoupling1GTUMesh *elt(v[i]->getMesh());
774 MEDCouplingAutoRefCountObjectPtr<DataArrayDouble> tmp2=l2.getCoords();
775 elt->setCoords(tmp2);
777 pds[i]=v[i]->getPartDef();
779 _m_by_types.assignParts(ms);
780 _m_by_types.assignDefParts(pds);
781 if(l2.isFamDefinedOnLev(id))
783 for(int i=0;i<sz;i++)
784 fams[i]=v[i]->getFam();
786 _fam=DataArrayInt::Aggregate(fams);
790 _fam=const_cast<DataArrayInt *>(fams[0]);
793 if(l2.isNumDefinedOnLev(id))
795 for(int i=0;i<sz;i++)
796 nums[i]=v[i]->getNum();
798 _num=DataArrayInt::Aggregate(nums);
802 _num=const_cast<DataArrayInt *>(nums[0]);
806 if(l2.isNamesDefinedOnLev(id))
808 for(int i=0;i<sz;i++)
809 names[i]=v[i]->getNames();
810 _names=dynamic_cast<DataArrayAsciiChar *>(DataArrayChar::Aggregate(names));
814 MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(MEDCoupling1GTUMesh *m):_m(this)
816 std::vector< const MEDCoupling1GTUMesh * > v(1);
821 MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(MEDCouplingUMesh *m):_m(this)
826 MEDFileUMeshSplitL1::MEDFileUMeshSplitL1(MEDCouplingUMesh *m, bool newOrOld):_m(this)
828 assignMesh(m,newOrOld);
831 void MEDFileUMeshSplitL1::setName(const std::string& name)
833 _m_by_types.setName(name);
836 std::size_t MEDFileUMeshSplitL1::getHeapMemorySizeWithoutChildren() const
841 std::vector<const BigMemoryObject *> MEDFileUMeshSplitL1::getDirectChildrenWithNull() const
843 std::vector<const BigMemoryObject *> ret;
844 ret.push_back(&_m_by_types);
846 ret.push_back((const DataArrayInt*)_fam);
847 ret.push_back((const DataArrayInt*)_num);
848 ret.push_back((const DataArrayInt*)_rev_num);
849 ret.push_back((const DataArrayAsciiChar*)_names);
853 MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::deepCpy(DataArrayDouble *coords) const
855 MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> ret=new MEDFileUMeshSplitL1(*this);
856 ret->_m_by_types=_m_by_types.deepCpy(coords);
857 if((const DataArrayInt *)_fam)
858 ret->_fam=_fam->deepCpy();
859 if((const DataArrayInt *)_num)
860 ret->_num=_num->deepCpy();
861 if((const DataArrayInt *)_rev_num)
862 ret->_rev_num=_rev_num->deepCpy();
863 if((const DataArrayAsciiChar *)_names)
864 ret->_names=_names->deepCpy();
868 bool MEDFileUMeshSplitL1::isEqual(const MEDFileUMeshSplitL1 *other, double eps, std::string& what) const
870 if(!_m_by_types.isEqual(other->_m_by_types,eps,what))
872 const DataArrayInt *d1=_fam;
873 const DataArrayInt *d2=other->_fam;
874 if((d1==0 && d2!=0) || (d1!=0 && d2==0))
876 what="Presence of family arr in one sublevel and not in other!";
880 if(!d1->isEqual(*d2))
882 what="family arr at a sublevel are not deeply equal !";
887 if((d1==0 && d2!=0) || (d1!=0 && d2==0))
889 what="Presence of cell numbering arr in one sublevel and not in other!";
893 if(!d1->isEqual(*d2))
895 what="Numbering cell arr at a sublevel are not deeply equal !";
898 const DataArrayAsciiChar *e1=_names;
899 const DataArrayAsciiChar *e2=other->_names;
900 if((e1==0 && e2!=0) || (e1!=0 && e2==0))
902 what="Presence of cell names arr in one sublevel and not in other!";
906 if(!e1->isEqual(*e2))
908 what="Name cell arr at a sublevel are not deeply equal !";
914 void MEDFileUMeshSplitL1::synchronizeTinyInfo(const MEDFileMesh& master) const
916 _m_by_types.synchronizeTinyInfo(master);
919 void MEDFileUMeshSplitL1::clearNonDiscrAttributes() const
921 _m_by_types.clearNonDiscrAttributes();
924 void MEDFileUMeshSplitL1::ClearNonDiscrAttributes(const MEDCouplingMesh *tmp)
928 (const_cast<MEDCouplingMesh *>(tmp))->setName("");
929 (const_cast<MEDCouplingMesh *>(tmp))->setDescription("");
930 (const_cast<MEDCouplingMesh *>(tmp))->setTime(0.,-1,-1);
931 (const_cast<MEDCouplingMesh *>(tmp))->setTimeUnit("");
934 void MEDFileUMeshSplitL1::setCoords(DataArrayDouble *coords)
936 _m_by_types.setCoords(coords);
939 void MEDFileUMeshSplitL1::assignMesh(MEDCouplingUMesh *m, bool newOrOld)
945 _m_by_types.assignUMesh(dynamic_cast<MEDCouplingUMesh *>(m->deepCpy()));
946 MEDCouplingAutoRefCountObjectPtr<DataArrayInt> da=_m_by_types.getUmesh()->getRenumArrForConsecutiveCellTypesSpec(typmai2,typmai2+MED_N_CELL_FIXED_GEO);
947 if(!da->isIdentity())
949 _num=da->invertArrayO2N2N2O(m->getNumberOfCells());
952 _m_by_types.getUmesh()->renumberCells(da->getConstPointer(),false);
957 if(!m->checkConsecutiveCellTypesAndOrder(typmai2,typmai2+MED_N_CELL_FIXED_GEO))
958 throw INTERP_KERNEL::Exception("MEDFileUMeshSplitL1::assignMesh(): the mesh does not follow the MED file numbering convention! Invoke sortCellsInMEDFileFrmt() first!");
960 _m_by_types.assignUMesh(m);
965 void MEDFileUMeshSplitL1::forceComputationOfParts() const
967 _m_by_types.forceComputationOfPartsFromUMesh();
970 void MEDFileUMeshSplitL1::assignParts(const std::vector< const MEDCoupling1GTUMesh * >& mParts)
972 _m_by_types.assignParts(mParts);
976 MEDFileUMeshSplitL1::MEDFileUMeshSplitL1():_m(this)
980 void MEDFileUMeshSplitL1::assignCommonPart()
982 _fam=DataArrayInt::New();
983 _fam->alloc(_m_by_types.getSize(),1);
984 _fam->fillWithValue(0);
987 bool MEDFileUMeshSplitL1::empty() const
989 return _m_by_types.empty();
992 bool MEDFileUMeshSplitL1::presenceOfOneFams(const std::vector<int>& ids) const
994 const DataArrayInt *fam=_fam;
997 return fam->presenceOfValue(ids);
1000 int MEDFileUMeshSplitL1::getMeshDimension() const
1002 return _m_by_types.getMeshDimension();
1005 void MEDFileUMeshSplitL1::simpleRepr(std::ostream& oss) const
1007 std::vector<int> code=_m_by_types.getDistributionOfTypes();
1008 int nbOfTypes=code.size()/3;
1009 for(int i=0;i<nbOfTypes;i++)
1011 INTERP_KERNEL::NormalizedCellType typ=(INTERP_KERNEL::NormalizedCellType) code[3*i];
1012 oss << " - Number of cells with type " << INTERP_KERNEL::CellModel::GetCellModel(typ).getRepr() << " : " << code[3*i+1] << std::endl;
1016 int MEDFileUMeshSplitL1::getSize() const
1018 return _m_by_types.getSize();
1021 MEDCouplingUMesh *MEDFileUMeshSplitL1::getFamilyPart(const int *idsBg, const int *idsEnd, bool renum) const
1023 MEDCouplingAutoRefCountObjectPtr<DataArrayInt> eltsToKeep=_fam->getIdsEqualList(idsBg,idsEnd);
1024 MEDCouplingUMesh *m=(MEDCouplingUMesh *)_m_by_types.getUmesh()->buildPartOfMySelf(eltsToKeep->getConstPointer(),eltsToKeep->getConstPointer()+eltsToKeep->getNumberOfTuples(),true);
1026 return renumIfNeeded(m,eltsToKeep->getConstPointer());
1030 DataArrayInt *MEDFileUMeshSplitL1::getFamilyPartArr(const int *idsBg, const int *idsEnd, bool renum) const
1032 MEDCouplingAutoRefCountObjectPtr<DataArrayInt> da=_fam->getIdsEqualList(idsBg,idsEnd);
1034 return renumIfNeededArr(da);
1038 std::vector<INTERP_KERNEL::NormalizedCellType> MEDFileUMeshSplitL1::getGeoTypes() const
1040 return _m_by_types.getGeoTypes();
1043 int MEDFileUMeshSplitL1::getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType ct) const
1045 return _m_by_types.getNumberOfCellsWithType(ct);
1048 MEDCouplingUMesh *MEDFileUMeshSplitL1::getWholeMesh(bool renum) const
1050 MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> tmp;
1051 if(renum && ((const DataArrayInt *)_num))
1054 { tmp=_m_by_types.getUmesh(); if(tmp) tmp->incrRef(); }
1058 int MEDFileUMeshSplitL1::getNumberOfCells() const
1060 return _m_by_types.getNumberOfCells();
1063 DataArrayInt *MEDFileUMeshSplitL1::extractFamilyFieldOnGeoType(INTERP_KERNEL::NormalizedCellType gt) const
1065 const DataArrayInt *fam(_fam);
1068 int start(0),stop(0);
1069 _m_by_types.getStartStopOfGeoTypeWithoutComputation(gt,start,stop);
1070 return fam->selectByTupleId2(start,stop,1);
1073 DataArrayInt *MEDFileUMeshSplitL1::extractNumberFieldOnGeoType(INTERP_KERNEL::NormalizedCellType gt) const
1075 const DataArrayInt *num(_num);
1078 int start(0),stop(0);
1079 _m_by_types.getStartStopOfGeoTypeWithoutComputation(gt,start,stop);
1080 return num->selectByTupleId2(start,stop,1);
1083 DataArrayInt *MEDFileUMeshSplitL1::getOrCreateAndGetFamilyField()
1085 if((DataArrayInt *)_fam)
1087 int nbOfTuples=_m_by_types.getSize();
1088 _fam=DataArrayInt::New(); _fam->alloc(nbOfTuples,1); _fam->fillWithZero();
1092 const DataArrayInt *MEDFileUMeshSplitL1::getFamilyField() const
1097 const DataArrayInt *MEDFileUMeshSplitL1::getNumberField() const
1102 const DataArrayInt *MEDFileUMeshSplitL1::getRevNumberField() const
1107 const DataArrayAsciiChar *MEDFileUMeshSplitL1::getNameField() const
1112 const PartDefinition *MEDFileUMeshSplitL1::getPartDef(INTERP_KERNEL::NormalizedCellType gt) const
1114 return _m_by_types.getPartDefOfWithoutComputation(gt);
1117 void MEDFileUMeshSplitL1::eraseFamilyField()
1119 _fam->fillWithZero();
1123 * This method ignores _m and _m_by_types.
1125 void MEDFileUMeshSplitL1::setGroupsFromScratch(const std::vector<const MEDCouplingUMesh *>& ms, std::map<std::string,int>& familyIds,
1126 std::map<std::string, std::vector<std::string> >& groups)
1128 std::vector< DataArrayInt * > corr;
1129 _m=MEDCouplingUMesh::FuseUMeshesOnSameCoords(ms,0,corr);
1130 std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> > corrMSafe(corr.begin(),corr.end());
1131 std::vector< std::vector<int> > fidsOfGroups;
1132 std::vector< const DataArrayInt * > corr2(corr.begin(),corr.end());
1133 _fam=DataArrayInt::MakePartition(corr2,((MEDCouplingUMesh *)_m)->getNumberOfCells(),fidsOfGroups);
1134 int nbOfCells=((MEDCouplingUMesh *)_m)->getNumberOfCells();
1135 std::map<int,std::string> newfams;
1136 std::map<int,int> famIdTrad;
1137 TraduceFamilyNumber(fidsOfGroups,familyIds,famIdTrad,newfams);
1138 int *w=_fam->getPointer();
1139 for(int i=0;i<nbOfCells;i++,w++)
1143 void MEDFileUMeshSplitL1::write(med_idt fid, const std::string& mName, int mdim) const
1145 std::vector<MEDCoupling1GTUMesh *> ms(_m_by_types.getParts());
1147 for(std::vector<MEDCoupling1GTUMesh *>::const_iterator it=ms.begin();it!=ms.end();it++)
1149 int nbCells=(*it)->getNumberOfCells();
1150 int end=start+nbCells;
1151 MEDCouplingAutoRefCountObjectPtr<DataArrayInt> fam,num;
1152 MEDCouplingAutoRefCountObjectPtr<DataArrayAsciiChar> names;
1153 if((const DataArrayInt *)_fam)
1154 fam=_fam->substr(start,end);
1155 if((const DataArrayInt *)_num)
1156 num=_num->substr(start,end);
1157 if((const DataArrayAsciiChar *)_names)
1158 names=static_cast<DataArrayAsciiChar *>(_names->substr(start,end));
1159 MEDFileUMeshPerType::Write(fid,mName,mdim,(*it),fam,num,names);
1164 void MEDFileUMeshSplitL1::renumberNodesInConn(const int *newNodeNumbersO2N)
1166 _m_by_types.renumberNodesInConnWithoutComputation(newNodeNumbersO2N);
1169 void MEDFileUMeshSplitL1::serialize(std::vector<int>& tinyInt, std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> >& bigArraysI) const
1171 bigArraysI.push_back(_fam);
1172 bigArraysI.push_back(_num);
1173 _m_by_types.serialize(tinyInt,bigArraysI);
1176 void MEDFileUMeshSplitL1::unserialize(const std::string& name, DataArrayDouble *coo, std::vector<int>& tinyInt, std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> >& bigArraysI)
1178 _fam=bigArraysI.back(); bigArraysI.pop_back();
1179 _num=bigArraysI.back(); bigArraysI.pop_back();
1180 _m_by_types.unserialize(name,coo,tinyInt,bigArraysI);
1183 void MEDFileUMeshSplitL1::changeFamilyIdArr(int oldId, int newId)
1185 DataArrayInt *arr=_fam;
1187 arr->changeValue(oldId,newId);
1190 void MEDFileUMeshSplitL1::setFamilyArr(DataArrayInt *famArr)
1197 int sz(_m_by_types.getSize());
1198 famArr->checkNbOfTuplesAndComp(sz,1,"MEDFileUMeshSplitL1::setFamilyArr : Problem in size of Family arr ! ");
1203 DataArrayInt *MEDFileUMeshSplitL1::getFamilyField()
1208 void MEDFileUMeshSplitL1::setRenumArr(DataArrayInt *renumArr)
1216 int sz(_m_by_types.getSize());
1217 renumArr->checkNbOfTuplesAndComp(sz,1,"MEDFileUMeshSplitL1::setRenumArr : Problem in size of numbering arr ! ");
1218 renumArr->incrRef();
1223 void MEDFileUMeshSplitL1::setNameArr(DataArrayAsciiChar *nameArr)
1230 int sz(_m_by_types.getSize());
1231 nameArr->checkNbOfTuplesAndComp(sz,MED_SNAME_SIZE,"MEDFileUMeshSplitL1::setNameArr : Problem in size of name arr ! ");
1236 MEDCouplingUMesh *MEDFileUMeshSplitL1::Renumber2(const DataArrayInt *renum, MEDCouplingUMesh *m, const int *cellIds)
1241 m->renumberCells(renum->getConstPointer(),true);
1244 MEDCouplingAutoRefCountObjectPtr<DataArrayInt> locnum=renum->selectByTupleId(cellIds,cellIds+m->getNumberOfCells());
1245 m->renumberCells(locnum->getConstPointer(),true);
1250 MEDFileUMeshSplitL1 *MEDFileUMeshSplitL1::Unserialize(const std::string& name, DataArrayDouble *coo, std::vector<int>& tinyInt, std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> >& bigArraysI)
1252 MEDCouplingAutoRefCountObjectPtr<MEDFileUMeshSplitL1> ret(new MEDFileUMeshSplitL1);
1253 ret->unserialize(name,coo,tinyInt,bigArraysI);
1257 MEDCouplingUMesh *MEDFileUMeshSplitL1::renumIfNeeded(MEDCouplingUMesh *m, const int *cellIds) const
1259 return Renumber2(_num,m,cellIds);
1262 DataArrayInt *MEDFileUMeshSplitL1::Renumber(const DataArrayInt *renum, const DataArrayInt *da)
1264 if((const DataArrayInt *)renum==0)
1267 return const_cast<DataArrayInt *>(da);
1269 return renum->selectByTupleId(da->getConstPointer(),da->getConstPointer()+da->getNumberOfTuples());
1272 DataArrayInt *MEDFileUMeshSplitL1::renumIfNeededArr(const DataArrayInt *da) const
1274 return Renumber(_num,da);
1277 std::vector<int> MEDFileUMeshSplitL1::GetNewFamiliesNumber(int nb, const std::map<std::string,int>& families)
1280 for(std::map<std::string,int>::const_iterator it=families.begin();it!=families.end();it++)
1281 id=std::max(id,(*it).second);
1284 std::vector<int> ret(nb);
1285 for(int i=1;i<=nb;i++)
1290 void MEDFileUMeshSplitL1::TraduceFamilyNumber(const std::vector< std::vector<int> >& fidsGrps, std::map<std::string,int>& familyIds,
1291 std::map<int,int>& famIdTrad, std::map<int,std::string>& newfams)
1293 std::set<int> allfids;
1297 void MEDFileUMeshSplitL1::computeRevNum() const
1300 int maxValue=_num->getMaxValue(pos);
1301 _rev_num=_num->invertArrayN2O2O2N(maxValue+1);
1306 MEDFileUMeshAggregateCompute::MEDFileUMeshAggregateCompute():_mp_time(0),_m_time(0)
1310 void MEDFileUMeshAggregateCompute::setName(const std::string& name)
1312 if(_m_time>=_mp_time)
1314 MEDCouplingUMesh *um(_m);
1318 if(_mp_time>=_m_time)
1320 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1322 MEDCoupling1GTUMesh *tmp(*it);
1329 void MEDFileUMeshAggregateCompute::assignParts(const std::vector< const MEDCoupling1GTUMesh * >& mParts)
1331 std::size_t sz(mParts.size());
1332 std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> > ret(sz);
1333 for(std::size_t i=0;i<sz;i++)
1335 const MEDCoupling1GTUMesh *elt(mParts[i]);
1337 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::assignParts : presence of null pointer !");
1338 ret[i]=const_cast<MEDCoupling1GTUMesh *>(elt); elt->incrRef();
1341 _part_def.clear(); _part_def.resize(sz);
1342 _mp_time=std::max(_mp_time,_m_time)+1;
1346 void MEDFileUMeshAggregateCompute::assignDefParts(const std::vector<const PartDefinition *>& partDefs)
1348 if(_mp_time<_m_time)
1349 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::assignDefParts : the parts require a computation !");
1350 std::size_t sz(partDefs.size());
1351 if(_part_def.size()!=partDefs.size() || _part_def.size()!=_m_parts.size())
1352 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::assignDefParts : sizes of vectors of part definition mismatch !");
1353 for(std::size_t i=0;i<sz;i++)
1355 const PartDefinition *elt(partDefs[i]);
1358 _part_def[i]=const_cast<PartDefinition*>(elt);
1362 void MEDFileUMeshAggregateCompute::assignUMesh(MEDCouplingUMesh *m)
1366 _m_time=std::max(_mp_time,_m_time)+1;
1369 MEDCouplingUMesh *MEDFileUMeshAggregateCompute::getUmesh() const
1371 if(_mp_time<=_m_time)
1373 std::vector< const MEDCoupling1GTUMesh *> mp(_m_parts.size());
1374 std::copy(_m_parts.begin(),_m_parts.end(),mp.begin());
1375 _m=MEDCoupling1GTUMesh::AggregateOnSameCoordsToUMesh(mp);
1376 _m_parts.clear();//to avoid memory peak !
1377 _m_time=_mp_time+1;//+1 is important ! That is to say that only _m is OK not _m_parts because cleared !
1381 int MEDFileUMeshAggregateCompute::getNumberOfCells() const
1383 if(_mp_time<=_m_time)
1384 return _m->getNumberOfCells();
1386 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1387 ret+=(*it)->getNumberOfCells();
1391 std::vector<INTERP_KERNEL::NormalizedCellType> MEDFileUMeshAggregateCompute::getGeoTypes() const
1393 if(_mp_time>=_m_time)
1395 std::size_t sz(_m_parts.size());
1396 std::vector<INTERP_KERNEL::NormalizedCellType> ret(sz);
1397 for(std::size_t i=0;i<sz;i++)
1398 ret[i]=_m_parts[i]->getCellModelEnum();
1402 return _m->getAllGeoTypesSorted();
1405 int MEDFileUMeshAggregateCompute::getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType ct) const
1407 if(_mp_time>=_m_time)
1409 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1411 const MEDCoupling1GTUMesh *elt(*it);
1412 if(elt && elt->getCellModelEnum()==ct)
1413 return elt->getNumberOfCells();
1418 return _m->getNumberOfCellsWithType(ct);
1421 std::vector<MEDCoupling1GTUMesh *> MEDFileUMeshAggregateCompute::retrievePartsWithoutComputation() const
1423 if(_mp_time<_m_time)
1424 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartsWithoutComputation : the parts require a computation !");
1426 std::vector<MEDCoupling1GTUMesh *> ret(_m_parts.size());
1428 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++,i++)
1430 const MEDCoupling1GTUMesh *elt(*it);
1431 ret[i]=const_cast<MEDCoupling1GTUMesh *>(elt);
1436 std::vector<MEDCoupling1GTUMesh *> MEDFileUMeshAggregateCompute::getParts() const
1438 if(_mp_time<_m_time)
1439 forceComputationOfPartsFromUMesh();
1440 return retrievePartsWithoutComputation();
1443 MEDCoupling1GTUMesh *MEDFileUMeshAggregateCompute::retrievePartWithoutComputation(INTERP_KERNEL::NormalizedCellType gt) const
1445 std::vector<MEDCoupling1GTUMesh *> v(retrievePartsWithoutComputation());
1446 std::size_t sz(v.size());
1447 for(std::size_t i=0;i<sz;i++)
1450 if(v[i]->getCellModelEnum()==gt)
1453 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartWithoutComputation : the geometric type is not existing !");
1456 void MEDFileUMeshAggregateCompute::getStartStopOfGeoTypeWithoutComputation(INTERP_KERNEL::NormalizedCellType gt, int& start, int& stop) const
1459 std::vector<MEDCoupling1GTUMesh *> v(retrievePartsWithoutComputation());
1460 std::size_t sz(v.size());
1461 for(std::size_t i=0;i<sz;i++)
1465 if(v[i]->getCellModelEnum()==gt)
1467 stop=start+v[i]->getNumberOfCells();
1471 start+=v[i]->getNumberOfCells();
1474 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getStartStopOfGeoTypeWithoutComputation : the geometric type is not existing !");
1477 void MEDFileUMeshAggregateCompute::renumberNodesInConnWithoutComputation(const int *newNodeNumbersO2N)
1479 if(_mp_time>_m_time)
1481 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1483 MEDCoupling1GTUMesh *m(*it);
1485 m->renumberNodesInConn(newNodeNumbersO2N);
1490 MEDCouplingUMesh *m(getUmesh());
1493 m->renumberNodesInConn(newNodeNumbersO2N);
1497 void MEDFileUMeshAggregateCompute::forceComputationOfPartsFromUMesh() const
1499 const MEDCouplingUMesh *m(_m);
1502 if(_m_parts.empty())
1503 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::forceComputationOfPartsFromUMesh : null UMesh !");
1505 return ;// no needs to compte parts they are already here !
1507 std::vector<MEDCouplingUMesh *> ms(m->splitByType());
1508 std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCouplingUMesh> > msMSafe(ms.begin(),ms.end());
1509 std::size_t sz(msMSafe.size());
1510 _m_parts.resize(sz);
1511 for(std::size_t i=0;i<sz;i++)
1512 _m_parts[i]=MEDCoupling1GTUMesh::New(ms[i]);
1514 _part_def.resize(_m_parts.size());
1515 _mp_time=std::max(_mp_time,_m_time);
1518 const PartDefinition *MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation(INTERP_KERNEL::NormalizedCellType gt) const
1520 if(_mp_time<_m_time)
1521 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation : the parts require a computation !");
1522 if(_m_parts.size()!=_part_def.size())
1523 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation : size of arrays are expected to be the same !");
1524 std::size_t sz(_m_parts.size());
1525 for(std::size_t i=0;i<sz;i++)
1527 const MEDCoupling1GTUMesh *mesh(_m_parts[i]);
1529 if(mesh->getCellModelEnum()==gt)
1530 return _part_def[i];
1532 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getPartDefOfWithoutComputation : The input geo type is not existing in this !");
1535 void MEDFileUMeshAggregateCompute::serialize(std::vector<int>& tinyInt, std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> >& bigArraysI) const
1537 if(_mp_time<_m_time)
1538 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : the parts require a computation !");
1539 std::size_t sz(_m_parts.size());
1540 tinyInt.push_back((int)sz);
1541 for(std::size_t i=0;i<sz;i++)
1543 const MEDCoupling1GTUMesh *mesh(_m_parts[i]);
1545 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : one part is empty !");
1546 tinyInt.push_back(mesh->getCellModelEnum());
1547 const MEDCoupling1SGTUMesh *mesh1(dynamic_cast<const MEDCoupling1SGTUMesh *>(mesh));
1548 const MEDCoupling1DGTUMesh *mesh2(dynamic_cast<const MEDCoupling1DGTUMesh *>(mesh));
1551 DataArrayInt *elt(mesh1->getNodalConnectivity());
1554 MEDCouplingAutoRefCountObjectPtr<DataArrayInt> elt1(elt);
1555 bigArraysI.push_back(elt1);
1559 DataArrayInt *elt1(mesh2->getNodalConnectivity()),*elt2(mesh2->getNodalConnectivityIndex());
1564 MEDCouplingAutoRefCountObjectPtr<DataArrayInt> elt11(elt1),elt22(elt2);
1565 bigArraysI.push_back(elt11); bigArraysI.push_back(elt22);
1568 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::serialize : unrecognized single geo type mesh !");
1569 const PartDefinition *pd(_part_def[i]);
1571 tinyInt.push_back(-1);
1574 std::vector<int> tinyTmp;
1575 pd->serialize(tinyTmp,bigArraysI);
1576 tinyInt.push_back((int)tinyTmp.size());
1577 tinyInt.insert(tinyInt.end(),tinyTmp.begin(),tinyTmp.end());
1582 void MEDFileUMeshAggregateCompute::unserialize(const std::string& name, DataArrayDouble *coo, std::vector<int>& tinyInt, std::vector< MEDCouplingAutoRefCountObjectPtr<DataArrayInt> >& bigArraysI)
1584 int nbParts(tinyInt.back()); tinyInt.pop_back();
1585 _part_def.clear(); _part_def.resize(nbParts);
1586 _m_parts.clear(); _m_parts.resize(nbParts);
1587 for(int i=0;i<nbParts;i++)
1589 INTERP_KERNEL::NormalizedCellType tp((INTERP_KERNEL::NormalizedCellType) tinyInt.back()); tinyInt.pop_back();
1590 MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> mesh(MEDCoupling1GTUMesh::New(name,tp));
1591 mesh->setCoords(coo);
1592 MEDCoupling1SGTUMesh *mesh1(dynamic_cast<MEDCoupling1SGTUMesh *>((MEDCoupling1GTUMesh *) mesh));
1593 MEDCoupling1DGTUMesh *mesh2(dynamic_cast<MEDCoupling1DGTUMesh *>((MEDCoupling1GTUMesh *) mesh));
1596 mesh1->setNodalConnectivity(bigArraysI.back()); bigArraysI.pop_back();
1600 MEDCouplingAutoRefCountObjectPtr<DataArrayInt> elt0,elt1;
1601 elt0=bigArraysI.back(); bigArraysI.pop_back();
1602 elt1=bigArraysI.back(); bigArraysI.pop_back();
1603 mesh2->setNodalConnectivity(elt0,elt1);
1606 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::unserialize : unrecognized single geo type mesh !");
1608 int pdid(tinyInt.back()); tinyInt.pop_back();
1610 _part_def[i]=PartDefinition::Unserialize(tinyInt,bigArraysI);
1611 _mp_time=std::max(_mp_time,_m_time)+1;
1616 * This method returns true if \a this is stored split by type false if stored in a merged unstructured mesh.
1618 bool MEDFileUMeshAggregateCompute::isStoredSplitByType() const
1620 return _mp_time>=_m_time;
1623 std::size_t MEDFileUMeshAggregateCompute::getTimeOfThis() const
1625 if(_mp_time>_m_time)
1626 return getTimeOfParts();
1627 if(_m_time>_mp_time)
1628 return getTimeOfUMesh();
1629 return std::max(getTimeOfParts(),getTimeOfUMesh());
1632 std::size_t MEDFileUMeshAggregateCompute::getTimeOfParts() const
1635 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1637 const MEDCoupling1GTUMesh *elt(*it);
1639 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getTimeOfParts : null obj in parts !");
1640 ret=std::max(ret,elt->getTimeOfThis());
1643 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getTimeOfParts : parts is empty !");
1647 std::size_t MEDFileUMeshAggregateCompute::getTimeOfUMesh() const
1649 const MEDCouplingUMesh *m(_m);
1651 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getTimeOfUMesh : unmesh is null !");
1652 return m->getTimeOfThis();
1655 std::size_t MEDFileUMeshAggregateCompute::getHeapMemorySizeWithoutChildren() const
1657 std::size_t ret(_m_parts.size()*sizeof(MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh>));
1661 std::vector<const BigMemoryObject *> MEDFileUMeshAggregateCompute::getDirectChildrenWithNull() const
1663 std::vector<const BigMemoryObject *> ret;
1664 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1665 ret.push_back((const MEDCoupling1GTUMesh *)*it);
1666 ret.push_back((const MEDCouplingUMesh *)_m);
1670 MEDFileUMeshAggregateCompute MEDFileUMeshAggregateCompute::deepCpy(DataArrayDouble *coords) const
1672 MEDFileUMeshAggregateCompute ret;
1673 ret._m_parts.resize(_m_parts.size());
1674 for(std::size_t i=0;i<_m_parts.size();i++)
1676 const MEDCoupling1GTUMesh *elt(_m_parts[i]);
1679 ret._m_parts[i]=static_cast<ParaMEDMEM::MEDCoupling1GTUMesh*>(elt->deepCpy());
1680 ret._m_parts[i]->setCoords(coords);
1683 ret._mp_time=_mp_time; ret._m_time=_m_time;
1684 if((const MEDCouplingUMesh *)_m)
1686 ret._m=static_cast<ParaMEDMEM::MEDCouplingUMesh*>(_m->deepCpy());
1687 ret._m->setCoords(coords);
1689 std::size_t sz(_part_def.size());
1690 ret._part_def.clear(); ret._part_def.resize(sz);
1691 for(std::size_t i=0;i<sz;i++)
1693 const PartDefinition *elt(_part_def[i]);
1695 ret._part_def[i]=elt->deepCpy();
1700 bool MEDFileUMeshAggregateCompute::isEqual(const MEDFileUMeshAggregateCompute& other, double eps, std::string& what) const
1702 const MEDCouplingUMesh *m1(getUmesh());
1703 const MEDCouplingUMesh *m2(other.getUmesh());
1704 if((m1==0 && m2!=0) || (m1!=0 && m2==0))
1706 what="Presence of mesh in one sublevel and not in other!";
1712 if(!m1->isEqualIfNotWhy(m2,eps,what2))
1714 what=std::string("meshes at a sublevel are not deeply equal (")+what2+std::string(")!");
1718 std::size_t sz(_part_def.size());
1719 if(sz!=other._part_def.size())
1721 what=std::string("number of subdivision per geo type for part definition is not the same !");
1724 for(std::size_t i=0;i<sz;i++)
1726 const PartDefinition *pd0(_part_def[i]),*pd1(other._part_def[i]);
1729 if((!pd0 && pd1) || (pd0 && !pd1))
1731 what=std::string("a cell part def is defined only for one among this or other !");
1734 bool ret(pd0->isEqual(pd1,what));
1741 void MEDFileUMeshAggregateCompute::clearNonDiscrAttributes() const
1743 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1744 MEDFileUMeshSplitL1::ClearNonDiscrAttributes(*it);
1745 MEDFileUMeshSplitL1::ClearNonDiscrAttributes(_m);
1748 void MEDFileUMeshAggregateCompute::synchronizeTinyInfo(const MEDFileMesh& master) const
1750 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1752 const MEDCoupling1GTUMesh *tmp(*it);
1755 (const_cast<MEDCoupling1GTUMesh *>(tmp))->setName(master.getName().c_str());
1756 (const_cast<MEDCoupling1GTUMesh *>(tmp))->setDescription(master.getDescription().c_str());
1757 (const_cast<MEDCoupling1GTUMesh *>(tmp))->setTime(master.getTimeValue(),master.getIteration(),master.getOrder());
1758 (const_cast<MEDCoupling1GTUMesh *>(tmp))->setTimeUnit(master.getTimeUnit());
1761 const MEDCouplingUMesh *m(_m);
1764 (const_cast<MEDCouplingUMesh *>(m))->setName(master.getName().c_str());
1765 (const_cast<MEDCouplingUMesh *>(m))->setDescription(master.getDescription().c_str());
1766 (const_cast<MEDCouplingUMesh *>(m))->setTime(master.getTimeValue(),master.getIteration(),master.getOrder());
1767 (const_cast<MEDCouplingUMesh *>(m))->setTimeUnit(master.getTimeUnit());
1771 bool MEDFileUMeshAggregateCompute::empty() const
1773 if(_mp_time<_m_time)
1774 return ((const MEDCouplingUMesh *)_m)==0;
1775 //else _mp_time>=_m_time)
1776 return _m_parts.empty();
1779 int MEDFileUMeshAggregateCompute::getMeshDimension() const
1781 if(_mp_time<_m_time)
1783 const MEDCouplingUMesh *m(_m);
1785 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getMeshDimension : no umesh in this !");
1786 return m->getMeshDimension();
1790 if(_m_parts.empty())
1791 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getMeshDimension : part mesh is empty !");
1792 const MEDCoupling1GTUMesh *m(_m_parts[0]);
1794 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getMeshDimension : part mesh contains null instance !");
1795 return m->getMeshDimension();
1799 std::vector<int> MEDFileUMeshAggregateCompute::getDistributionOfTypes() const
1801 if(_mp_time<_m_time)
1803 const MEDCouplingUMesh *m(_m);
1805 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getDistributionOfTypes : no umesh in this !");
1806 return m->getDistributionOfTypes();
1810 std::vector<int> ret;
1811 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1813 const MEDCoupling1GTUMesh *tmp(*it);
1815 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getDistributionOfTypes : part mesh contains null instance !");
1816 std::vector<int> ret0(tmp->getDistributionOfTypes());
1817 ret.insert(ret.end(),ret0.begin(),ret0.end());
1823 int MEDFileUMeshAggregateCompute::getSize() const
1825 if(_mp_time<_m_time)
1827 const MEDCouplingUMesh *m(_m);
1829 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getSize : no umesh in this !");
1830 return m->getNumberOfCells();
1835 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::const_iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1837 const MEDCoupling1GTUMesh *m(*it);
1839 throw INTERP_KERNEL::Exception("MEDFileUMeshAggregateCompute::getSize : part mesh contains null instance !");
1840 ret+=m->getNumberOfCells();
1846 void MEDFileUMeshAggregateCompute::setCoords(DataArrayDouble *coords)
1848 for(std::vector< MEDCouplingAutoRefCountObjectPtr<MEDCoupling1GTUMesh> >::iterator it=_m_parts.begin();it!=_m_parts.end();it++)
1850 MEDCoupling1GTUMesh *tmp(*it);
1852 (*it)->setCoords(coords);
1854 MEDCouplingUMesh *m(_m);
1856 m->setCoords(coords);