1 // Copyright (C) 2007-2016 CEA/DEN, EDF R&D
3 // This library is free software; you can redistribute it and/or
4 // modify it under the terms of the GNU Lesser General Public
5 // License as published by the Free Software Foundation; either
6 // version 2.1 of the License, or (at your option) any later version.
8 // This library is distributed in the hope that it will be useful,
9 // but WITHOUT ANY WARRANTY; without even the implied warranty of
10 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
11 // Lesser General Public License for more details.
13 // You should have received a copy of the GNU Lesser General Public
14 // License along with this library; if not, write to the Free Software
15 // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
17 // See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
19 // Author : Anthony Geay (EDF R&D)
21 #include "MEDCouplingUMesh.hxx"
22 #include "MEDCouplingCMesh.hxx"
23 #include "MEDCoupling1GTUMesh.hxx"
24 #include "MEDCouplingFieldDouble.hxx"
25 #include "MEDCouplingSkyLineArray.hxx"
26 #include "CellModel.hxx"
27 #include "VolSurfUser.txx"
28 #include "InterpolationUtils.hxx"
29 #include "PointLocatorAlgos.txx"
31 #include "BBTreeDst.txx"
32 #include "SplitterTetra.hxx"
33 #include "DiameterCalculator.hxx"
34 #include "DirectedBoundingBox.hxx"
35 #include "InterpKernelMatrixTools.hxx"
36 #include "InterpKernelMeshQuality.hxx"
37 #include "InterpKernelCellSimplify.hxx"
38 #include "InterpKernelGeo2DEdgeArcCircle.hxx"
39 #include "InterpKernelAutoPtr.hxx"
40 #include "InterpKernelGeo2DNode.hxx"
41 #include "InterpKernelGeo2DEdgeLin.hxx"
42 #include "InterpKernelGeo2DEdgeArcCircle.hxx"
43 #include "InterpKernelGeo2DQuadraticPolygon.hxx"
44 #include "OrientationInverter.hxx"
45 #include "MEDCouplingUMesh_internal.hxx"
54 using namespace MEDCoupling;
56 double MEDCouplingUMesh::EPS_FOR_POLYH_ORIENTATION=1.e-14;
59 const INTERP_KERNEL::NormalizedCellType MEDCouplingUMesh::MEDMEM_ORDER[N_MEDMEM_ORDER] = { INTERP_KERNEL::NORM_POINT1, INTERP_KERNEL::NORM_SEG2, INTERP_KERNEL::NORM_SEG3, INTERP_KERNEL::NORM_SEG4, INTERP_KERNEL::NORM_POLYL, INTERP_KERNEL::NORM_TRI3, INTERP_KERNEL::NORM_QUAD4, INTERP_KERNEL::NORM_TRI6, INTERP_KERNEL::NORM_TRI7, INTERP_KERNEL::NORM_QUAD8, INTERP_KERNEL::NORM_QUAD9, INTERP_KERNEL::NORM_POLYGON, INTERP_KERNEL::NORM_QPOLYG, INTERP_KERNEL::NORM_TETRA4, INTERP_KERNEL::NORM_PYRA5, INTERP_KERNEL::NORM_PENTA6, INTERP_KERNEL::NORM_HEXA8, INTERP_KERNEL::NORM_HEXGP12, INTERP_KERNEL::NORM_TETRA10, INTERP_KERNEL::NORM_PYRA13, INTERP_KERNEL::NORM_PENTA15, INTERP_KERNEL::NORM_HEXA20, INTERP_KERNEL::NORM_HEXA27, INTERP_KERNEL::NORM_POLYHED };
60 const int MEDCouplingUMesh::MEDCOUPLING2VTKTYPETRADUCER[INTERP_KERNEL::NORM_MAXTYPE+1]={1,3,21,5,9,7,22,34,23,28,-1,-1,-1,-1,10,14,13,-1,12,-1,24,-1,16,27,-1,26,-1,29,-1,-1,25,42,36,4};
63 MEDCouplingUMesh *MEDCouplingUMesh::New()
65 return new MEDCouplingUMesh;
68 MEDCouplingUMesh *MEDCouplingUMesh::New(const std::string& meshName, int meshDim)
70 MEDCouplingUMesh *ret=new MEDCouplingUMesh;
71 ret->setName(meshName);
72 ret->setMeshDimension(meshDim);
77 * Returns a new MEDCouplingUMesh which is a full copy of \a this one. No data is shared
78 * between \a this and the new mesh.
79 * \return MEDCouplingUMesh * - a new instance of MEDCouplingMesh. The caller is to
80 * delete this mesh using decrRef() as it is no more needed.
82 MEDCouplingUMesh *MEDCouplingUMesh::deepCopy() const
89 * Returns a new MEDCouplingUMesh which is a copy of \a this one.
90 * \param [in] recDeepCpy - if \a true, the copy is deep, else all data arrays of \a
91 * this mesh are shared by the new mesh.
92 * \return MEDCouplingUMesh * - a new instance of MEDCouplingMesh. The caller is to
93 * delete this mesh using decrRef() as it is no more needed.
95 MEDCouplingUMesh *MEDCouplingUMesh::clone(bool recDeepCpy) const
97 return new MEDCouplingUMesh(*this,recDeepCpy);
101 * This method behaves mostly like MEDCouplingUMesh::deepCopy method, except that only nodal connectivity arrays are deeply copied.
102 * The coordinates are shared between \a this and the returned instance.
104 * \return MEDCouplingUMesh * - A new object instance holding the copy of \a this (deep for connectivity, shallow for coordiantes)
105 * \sa MEDCouplingUMesh::deepCopy
107 MEDCouplingUMesh *MEDCouplingUMesh::deepCopyConnectivityOnly() const
109 checkConnectivityFullyDefined();
110 MCAuto<MEDCouplingUMesh> ret=clone(false);
111 MCAuto<DataArrayInt> c(getNodalConnectivity()->deepCopy()),ci(getNodalConnectivityIndex()->deepCopy());
112 ret->setConnectivity(c,ci);
116 void MEDCouplingUMesh::shallowCopyConnectivityFrom(const MEDCouplingPointSet *other)
119 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::shallowCopyConnectivityFrom : input pointer is null !");
120 const MEDCouplingUMesh *otherC=dynamic_cast<const MEDCouplingUMesh *>(other);
122 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::shallowCopyConnectivityFrom : input pointer is not an MEDCouplingUMesh instance !");
123 MEDCouplingUMesh *otherC2=const_cast<MEDCouplingUMesh *>(otherC);//sorry :(
124 setConnectivity(otherC2->getNodalConnectivity(),otherC2->getNodalConnectivityIndex(),true);
127 std::size_t MEDCouplingUMesh::getHeapMemorySizeWithoutChildren() const
129 std::size_t ret(MEDCouplingPointSet::getHeapMemorySizeWithoutChildren());
133 std::vector<const BigMemoryObject *> MEDCouplingUMesh::getDirectChildrenWithNull() const
135 std::vector<const BigMemoryObject *> ret(MEDCouplingPointSet::getDirectChildrenWithNull());
136 ret.push_back(_nodal_connec);
137 ret.push_back(_nodal_connec_index);
141 void MEDCouplingUMesh::updateTime() const
143 MEDCouplingPointSet::updateTime();
146 updateTimeWith(*_nodal_connec);
148 if(_nodal_connec_index)
150 updateTimeWith(*_nodal_connec_index);
154 MEDCouplingUMesh::MEDCouplingUMesh():_mesh_dim(-2),_nodal_connec(0),_nodal_connec_index(0)
159 * Checks if \a this mesh is well defined. If no exception is thrown by this method,
160 * then \a this mesh is most probably is writable, exchangeable and available for most
161 * of algorithms. When a mesh is constructed from scratch, it is a good habit to call
162 * this method to check that all is in order with \a this mesh.
163 * \throw If the mesh dimension is not set.
164 * \throw If the coordinates array is not set (if mesh dimension != -1 ).
165 * \throw If \a this mesh contains elements of dimension different from the mesh dimension.
166 * \throw If the connectivity data array has more than one component.
167 * \throw If the connectivity data array has a named component.
168 * \throw If the connectivity index data array has more than one component.
169 * \throw If the connectivity index data array has a named component.
171 void MEDCouplingUMesh::checkConsistencyLight() const
174 throw INTERP_KERNEL::Exception("No mesh dimension specified !");
176 MEDCouplingPointSet::checkConsistencyLight();
177 for(std::set<INTERP_KERNEL::NormalizedCellType>::const_iterator iter=_types.begin();iter!=_types.end();iter++)
179 if((int)INTERP_KERNEL::CellModel::GetCellModel(*iter).getDimension()!=_mesh_dim)
181 std::ostringstream message;
182 message << "Mesh invalid because dimension is " << _mesh_dim << " and there is presence of cell(s) with type " << (*iter);
183 throw INTERP_KERNEL::Exception(message.str().c_str());
188 if(_nodal_connec->getNumberOfComponents()!=1)
189 throw INTERP_KERNEL::Exception("Nodal connectivity array is expected to be with number of components set to one !");
190 if(_nodal_connec->getInfoOnComponent(0)!="")
191 throw INTERP_KERNEL::Exception("Nodal connectivity array is expected to have no info on its single component !");
195 throw INTERP_KERNEL::Exception("Nodal connectivity array is not defined !");
196 if(_nodal_connec_index)
198 if(_nodal_connec_index->getNumberOfComponents()!=1)
199 throw INTERP_KERNEL::Exception("Nodal connectivity index array is expected to be with number of components set to one !");
200 if(_nodal_connec_index->getInfoOnComponent(0)!="")
201 throw INTERP_KERNEL::Exception("Nodal connectivity index array is expected to have no info on its single component !");
205 throw INTERP_KERNEL::Exception("Nodal connectivity index array is not defined !");
209 * Checks if \a this mesh is well defined. If no exception is thrown by this method,
210 * then \a this mesh is most probably is writable, exchangeable and available for all
211 * algorithms. <br> In addition to the checks performed by checkConsistencyLight(), this
212 * method thoroughly checks the nodal connectivity.
213 * \param [in] eps - a not used parameter.
214 * \throw If the mesh dimension is not set.
215 * \throw If the coordinates array is not set (if mesh dimension != -1 ).
216 * \throw If \a this mesh contains elements of dimension different from the mesh dimension.
217 * \throw If the connectivity data array has more than one component.
218 * \throw If the connectivity data array has a named component.
219 * \throw If the connectivity index data array has more than one component.
220 * \throw If the connectivity index data array has a named component.
221 * \throw If number of nodes defining an element does not correspond to the type of element.
222 * \throw If the nodal connectivity includes an invalid node id.
224 void MEDCouplingUMesh::checkConsistency(double eps) const
226 checkConsistencyLight();
229 int meshDim=getMeshDimension();
230 int nbOfNodes=getNumberOfNodes();
231 int nbOfCells=getNumberOfCells();
232 const int *ptr=_nodal_connec->getConstPointer();
233 const int *ptrI=_nodal_connec_index->getConstPointer();
234 for(int i=0;i<nbOfCells;i++)
236 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)ptr[ptrI[i]]);
237 if((int)cm.getDimension()!=meshDim)
239 std::ostringstream oss;
240 oss << "MEDCouplingUMesh::checkConsistency : cell << #" << i<< " with type Type " << cm.getRepr() << " in 'this' whereas meshdim == " << meshDim << " !";
241 throw INTERP_KERNEL::Exception(oss.str());
243 int nbOfNodesInCell=ptrI[i+1]-ptrI[i]-1;
245 if(nbOfNodesInCell!=(int)cm.getNumberOfNodes())
247 std::ostringstream oss;
248 oss << "MEDCouplingUMesh::checkConsistency : cell #" << i << " with static Type '" << cm.getRepr() << "' has " << cm.getNumberOfNodes();
249 oss << " nodes whereas in connectivity there is " << nbOfNodesInCell << " nodes ! Looks very bad !";
250 throw INTERP_KERNEL::Exception(oss.str());
252 if(cm.isQuadratic() && cm.isDynamic() && meshDim == 2)
253 if (nbOfNodesInCell % 2 || nbOfNodesInCell < 4)
255 std::ostringstream oss;
256 oss << "MEDCouplingUMesh::checkConsistency : cell #" << i << " with quadratic type '" << cm.getRepr() << "' has " << nbOfNodesInCell;
257 oss << " nodes. This should be even, and greater or equal than 4!! Looks very bad!";
258 throw INTERP_KERNEL::Exception(oss.str());
260 for(const int *w=ptr+ptrI[i]+1;w!=ptr+ptrI[i+1];w++)
265 if(nodeId>=nbOfNodes)
267 std::ostringstream oss; oss << "Cell #" << i << " is built with node #" << nodeId << " whereas there are only " << nbOfNodes << " nodes in the mesh !";
268 throw INTERP_KERNEL::Exception(oss.str());
273 std::ostringstream oss; oss << "Cell #" << i << " is built with node #" << nodeId << " in connectivity ! sounds bad !";
274 throw INTERP_KERNEL::Exception(oss.str());
278 if((INTERP_KERNEL::NormalizedCellType)(ptr[ptrI[i]])!=INTERP_KERNEL::NORM_POLYHED)
280 std::ostringstream oss; oss << "Cell #" << i << " is built with node #-1 in connectivity ! sounds bad !";
281 throw INTERP_KERNEL::Exception(oss.str());
289 * Sets dimension of \a this mesh. The mesh dimension in general depends on types of
290 * elements contained in the mesh. For more info on the mesh dimension see
291 * \ref MEDCouplingUMeshPage.
292 * \param [in] meshDim - a new mesh dimension.
293 * \throw If \a meshDim is invalid. A valid range is <em> -1 <= meshDim <= 3</em>.
295 void MEDCouplingUMesh::setMeshDimension(int meshDim)
297 if(meshDim<-1 || meshDim>3)
298 throw INTERP_KERNEL::Exception("Invalid meshDim specified ! Must be greater or equal to -1 and lower or equal to 3 !");
304 * Allocates memory to store an estimation of the given number of cells. The closer is the estimation to the number of cells effectively inserted,
305 * the less will the library need to reallocate memory. If the number of cells to be inserted is not known simply put 0 to this parameter.
306 * If a nodal connectivity previouly existed before the call of this method, it will be reset.
308 * \param [in] nbOfCells - estimation of the number of cell \a this mesh will contain.
310 * \if ENABLE_EXAMPLES
311 * \ref medcouplingcppexamplesUmeshStdBuild1 "Here is a C++ example".<br>
312 * \ref medcouplingpyexamplesUmeshStdBuild1 "Here is a Python example".
315 void MEDCouplingUMesh::allocateCells(int nbOfCells)
318 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::allocateCells : the input number of cells should be >= 0 !");
319 if(_nodal_connec_index)
321 _nodal_connec_index->decrRef();
325 _nodal_connec->decrRef();
327 _nodal_connec_index=DataArrayInt::New();
328 _nodal_connec_index->reserve(nbOfCells+1);
329 _nodal_connec_index->pushBackSilent(0);
330 _nodal_connec=DataArrayInt::New();
331 _nodal_connec->reserve(2*nbOfCells);
337 * Appends a cell to the connectivity array. For deeper understanding what is
338 * happening see \ref MEDCouplingUMeshNodalConnectivity.
339 * \param [in] type - type of cell to add.
340 * \param [in] size - number of nodes constituting this cell.
341 * \param [in] nodalConnOfCell - the connectivity of the cell to add.
343 * \if ENABLE_EXAMPLES
344 * \ref medcouplingcppexamplesUmeshStdBuild1 "Here is a C++ example".<br>
345 * \ref medcouplingpyexamplesUmeshStdBuild1 "Here is a Python example".
348 void MEDCouplingUMesh::insertNextCell(INTERP_KERNEL::NormalizedCellType type, int size, const int *nodalConnOfCell)
350 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(type);
351 if(_nodal_connec_index==0)
352 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::insertNextCell : nodal connectivity not set ! invoke allocateCells before calling insertNextCell !");
353 if((int)cm.getDimension()==_mesh_dim)
356 if(size!=(int)cm.getNumberOfNodes())
358 std::ostringstream oss; oss << "MEDCouplingUMesh::insertNextCell : Trying to push a " << cm.getRepr() << " cell with a size of " << size;
359 oss << " ! Expecting " << cm.getNumberOfNodes() << " !";
360 throw INTERP_KERNEL::Exception(oss.str());
362 int idx=_nodal_connec_index->back();
364 _nodal_connec_index->pushBackSilent(val);
365 _nodal_connec->writeOnPlace(idx,type,nodalConnOfCell,size);
370 std::ostringstream oss; oss << "MEDCouplingUMesh::insertNextCell : cell type " << cm.getRepr() << " has a dimension " << cm.getDimension();
371 oss << " whereas Mesh Dimension of current UMesh instance is set to " << _mesh_dim << " ! Please invoke \"setMeshDimension\" method before or invoke ";
372 oss << "\"MEDCouplingUMesh::New\" static method with 2 parameters name and meshDimension !";
373 throw INTERP_KERNEL::Exception(oss.str());
378 * Compacts data arrays to release unused memory. This method is to be called after
379 * finishing cell insertion using \a this->insertNextCell().
381 * \if ENABLE_EXAMPLES
382 * \ref medcouplingcppexamplesUmeshStdBuild1 "Here is a C++ example".<br>
383 * \ref medcouplingpyexamplesUmeshStdBuild1 "Here is a Python example".
386 void MEDCouplingUMesh::finishInsertingCells()
388 _nodal_connec->pack();
389 _nodal_connec_index->pack();
390 _nodal_connec->declareAsNew();
391 _nodal_connec_index->declareAsNew();
396 * Entry point for iteration over cells of this. Warning the returned cell iterator should be deallocated.
397 * Useful for python users.
399 MEDCouplingUMeshCellIterator *MEDCouplingUMesh::cellIterator()
401 return new MEDCouplingUMeshCellIterator(this);
405 * Entry point for iteration over cells groups geo types per geotypes. Warning the returned cell iterator should be deallocated.
406 * If \a this is not so that that cells are grouped by geo types this method will throw an exception.
407 * In this case MEDCouplingUMesh::sortCellsInMEDFileFrmt or MEDCouplingUMesh::rearrange2ConsecutiveCellTypes methods for example can be called before invoking this method.
408 * Useful for python users.
410 MEDCouplingUMeshCellByTypeEntry *MEDCouplingUMesh::cellsByType()
412 if(!checkConsecutiveCellTypes())
413 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::cellsByType : this mesh is not sorted by type !");
414 return new MEDCouplingUMeshCellByTypeEntry(this);
418 * Returns a set of all cell types available in \a this mesh.
419 * \return std::set<INTERP_KERNEL::NormalizedCellType> - the set of cell types.
420 * \warning this method does not throw any exception even if \a this is not defined.
421 * \sa MEDCouplingUMesh::getAllGeoTypesSorted
423 std::set<INTERP_KERNEL::NormalizedCellType> MEDCouplingUMesh::getAllGeoTypes() const
429 * This method returns the sorted list of geometric types in \a this.
430 * Sorted means in the same order than the cells in \a this. A single entry in return vector means the maximal chunk of consecutive cells in \a this
431 * having the same geometric type. So a same geometric type can appear more than once if the cells are not sorted per geometric type.
433 * \throw if connectivity in \a this is not correctly defined.
435 * \sa MEDCouplingMesh::getAllGeoTypes
437 std::vector<INTERP_KERNEL::NormalizedCellType> MEDCouplingUMesh::getAllGeoTypesSorted() const
439 std::vector<INTERP_KERNEL::NormalizedCellType> ret;
440 checkConnectivityFullyDefined();
441 int nbOfCells(getNumberOfCells());
444 if(getNodalConnectivityArrayLen()<1)
445 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getAllGeoTypesSorted : the connectivity in this seems invalid !");
446 const int *c(_nodal_connec->begin()),*ci(_nodal_connec_index->begin());
447 ret.push_back((INTERP_KERNEL::NormalizedCellType)c[*ci++]);
448 for(int i=1;i<nbOfCells;i++,ci++)
449 if(ret.back()!=((INTERP_KERNEL::NormalizedCellType)c[*ci]))
450 ret.push_back((INTERP_KERNEL::NormalizedCellType)c[*ci]);
455 * This method is a method that compares \a this and \a other.
456 * This method compares \b all attributes, even names and component names.
458 bool MEDCouplingUMesh::isEqualIfNotWhy(const MEDCouplingMesh *other, double prec, std::string& reason) const
461 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::isEqualIfNotWhy : input other pointer is null !");
462 std::ostringstream oss; oss.precision(15);
463 const MEDCouplingUMesh *otherC=dynamic_cast<const MEDCouplingUMesh *>(other);
466 reason="mesh given in input is not castable in MEDCouplingUMesh !";
469 if(!MEDCouplingPointSet::isEqualIfNotWhy(other,prec,reason))
471 if(_mesh_dim!=otherC->_mesh_dim)
473 oss << "umesh dimension mismatch : this mesh dimension=" << _mesh_dim << " other mesh dimension=" << otherC->_mesh_dim;
477 if(_types!=otherC->_types)
479 oss << "umesh geometric type mismatch :\nThis geometric types are :";
480 for(std::set<INTERP_KERNEL::NormalizedCellType>::const_iterator iter=_types.begin();iter!=_types.end();iter++)
481 { const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(*iter); oss << cm.getRepr() << ", "; }
482 oss << "\nOther geometric types are :";
483 for(std::set<INTERP_KERNEL::NormalizedCellType>::const_iterator iter=otherC->_types.begin();iter!=otherC->_types.end();iter++)
484 { const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(*iter); oss << cm.getRepr() << ", "; }
488 if(_nodal_connec!=0 || otherC->_nodal_connec!=0)
489 if(_nodal_connec==0 || otherC->_nodal_connec==0)
491 reason="Only one UMesh between the two this and other has its nodal connectivity DataArrayInt defined !";
494 if(_nodal_connec!=otherC->_nodal_connec)
495 if(!_nodal_connec->isEqualIfNotWhy(*otherC->_nodal_connec,reason))
497 reason.insert(0,"Nodal connectivity DataArrayInt differ : ");
500 if(_nodal_connec_index!=0 || otherC->_nodal_connec_index!=0)
501 if(_nodal_connec_index==0 || otherC->_nodal_connec_index==0)
503 reason="Only one UMesh between the two this and other has its nodal connectivity index DataArrayInt defined !";
506 if(_nodal_connec_index!=otherC->_nodal_connec_index)
507 if(!_nodal_connec_index->isEqualIfNotWhy(*otherC->_nodal_connec_index,reason))
509 reason.insert(0,"Nodal connectivity index DataArrayInt differ : ");
516 * Checks if data arrays of this mesh (node coordinates, nodal
517 * connectivity of cells, etc) of two meshes are same. Textual data like name etc. are
519 * \param [in] other - the mesh to compare with.
520 * \param [in] prec - precision value used to compare node coordinates.
521 * \return bool - \a true if the two meshes are same.
523 bool MEDCouplingUMesh::isEqualWithoutConsideringStr(const MEDCouplingMesh *other, double prec) const
525 const MEDCouplingUMesh *otherC=dynamic_cast<const MEDCouplingUMesh *>(other);
528 if(!MEDCouplingPointSet::isEqualWithoutConsideringStr(other,prec))
530 if(_mesh_dim!=otherC->_mesh_dim)
532 if(_types!=otherC->_types)
534 if(_nodal_connec!=0 || otherC->_nodal_connec!=0)
535 if(_nodal_connec==0 || otherC->_nodal_connec==0)
537 if(_nodal_connec!=otherC->_nodal_connec)
538 if(!_nodal_connec->isEqualWithoutConsideringStr(*otherC->_nodal_connec))
540 if(_nodal_connec_index!=0 || otherC->_nodal_connec_index!=0)
541 if(_nodal_connec_index==0 || otherC->_nodal_connec_index==0)
543 if(_nodal_connec_index!=otherC->_nodal_connec_index)
544 if(!_nodal_connec_index->isEqualWithoutConsideringStr(*otherC->_nodal_connec_index))
550 * Checks if \a this and \a other meshes are geometrically equivalent with high
551 * probability, else an exception is thrown. The meshes are considered equivalent if
552 * (1) meshes contain the same number of nodes and the same number of elements of the
553 * same types (2) three cells of the two meshes (first, last and middle) are based
554 * on coincident nodes (with a specified precision).
555 * \param [in] other - the mesh to compare with.
556 * \param [in] prec - the precision used to compare nodes of the two meshes.
557 * \throw If the two meshes do not match.
559 void MEDCouplingUMesh::checkFastEquivalWith(const MEDCouplingMesh *other, double prec) const
561 MEDCouplingPointSet::checkFastEquivalWith(other,prec);
562 const MEDCouplingUMesh *otherC=dynamic_cast<const MEDCouplingUMesh *>(other);
564 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::checkFastEquivalWith : Two meshes are not not unstructured !");
568 * Returns the reverse nodal connectivity. The reverse nodal connectivity enumerates
569 * cells each node belongs to.
570 * \warning For speed reasons, this method does not check if node ids in the nodal
571 * connectivity correspond to the size of node coordinates array.
572 * \param [in,out] revNodal - an array holding ids of cells sharing each node.
573 * \param [in,out] revNodalIndx - an array, of length \a this->getNumberOfNodes() + 1,
574 * dividing cell ids in \a revNodal into groups each referring to one
575 * node. Its every element (except the last one) is an index pointing to the
576 * first id of a group of cells. For example cells sharing the node #1 are
577 * described by following range of indices:
578 * [ \a revNodalIndx[1], \a revNodalIndx[2] ) and the cell ids are
579 * \a revNodal[ \a revNodalIndx[1] ], \a revNodal[ \a revNodalIndx[1] + 1], ...
580 * Number of cells sharing the *i*-th node is
581 * \a revNodalIndx[ *i*+1 ] - \a revNodalIndx[ *i* ].
582 * \throw If the coordinates array is not set.
583 * \throw If the nodal connectivity of cells is not defined.
585 * \if ENABLE_EXAMPLES
586 * \ref cpp_mcumesh_getReverseNodalConnectivity "Here is a C++ example".<br>
587 * \ref py_mcumesh_getReverseNodalConnectivity "Here is a Python example".
590 void MEDCouplingUMesh::getReverseNodalConnectivity(DataArrayInt *revNodal, DataArrayInt *revNodalIndx) const
593 int nbOfNodes(getNumberOfNodes());
594 int *revNodalIndxPtr=(int *)malloc((nbOfNodes+1)*sizeof(int));
595 revNodalIndx->useArray(revNodalIndxPtr,true,C_DEALLOC,nbOfNodes+1,1);
596 std::fill(revNodalIndxPtr,revNodalIndxPtr+nbOfNodes+1,0);
597 const int *conn(_nodal_connec->begin()),*connIndex(_nodal_connec_index->begin());
598 int nbOfCells(getNumberOfCells()),nbOfEltsInRevNodal(0);
599 for(int eltId=0;eltId<nbOfCells;eltId++)
601 const int *strtNdlConnOfCurCell(conn+connIndex[eltId]+1),*endNdlConnOfCurCell(conn+connIndex[eltId+1]);
602 for(const int *iter=strtNdlConnOfCurCell;iter!=endNdlConnOfCurCell;iter++)
603 if(*iter>=0)//for polyhedrons
605 nbOfEltsInRevNodal++;
606 revNodalIndxPtr[(*iter)+1]++;
609 std::transform(revNodalIndxPtr+1,revNodalIndxPtr+nbOfNodes+1,revNodalIndxPtr,revNodalIndxPtr+1,std::plus<int>());
610 int *revNodalPtr=(int *)malloc((nbOfEltsInRevNodal)*sizeof(int));
611 revNodal->useArray(revNodalPtr,true,C_DEALLOC,nbOfEltsInRevNodal,1);
612 std::fill(revNodalPtr,revNodalPtr+nbOfEltsInRevNodal,-1);
613 for(int eltId=0;eltId<nbOfCells;eltId++)
615 const int *strtNdlConnOfCurCell=conn+connIndex[eltId]+1;
616 const int *endNdlConnOfCurCell=conn+connIndex[eltId+1];
617 for(const int *iter=strtNdlConnOfCurCell;iter!=endNdlConnOfCurCell;iter++)
618 if(*iter>=0)//for polyhedrons
619 *std::find_if(revNodalPtr+revNodalIndxPtr[*iter],revNodalPtr+revNodalIndxPtr[*iter+1],std::bind2nd(std::equal_to<int>(),-1))=eltId;
624 * Creates a new MEDCouplingUMesh containing cells, of dimension one less than \a
625 * this->getMeshDimension(), that bound cells of \a this mesh. In addition arrays
626 * describing correspondence between cells of \a this and the result meshes are
627 * returned. The arrays \a desc and \a descIndx (\ref numbering-indirect) describe the descending connectivity,
628 * i.e. enumerate cells of the result mesh bounding each cell of \a this mesh. The
629 * arrays \a revDesc and \a revDescIndx (\ref numbering-indirect) describe the reverse descending connectivity,
630 * i.e. enumerate cells of \a this mesh bounded by each cell of the result mesh.
631 * \warning For speed reasons, this method does not check if node ids in the nodal
632 * connectivity correspond to the size of node coordinates array.
633 * \warning Cells of the result mesh are \b not sorted by geometric type, hence,
634 * to write this mesh to the MED file, its cells must be sorted using
635 * sortCellsInMEDFileFrmt().
636 * \param [in,out] desc - the array containing cell ids of the result mesh bounding
637 * each cell of \a this mesh.
638 * \param [in,out] descIndx - the array, of length \a this->getNumberOfCells() + 1,
639 * dividing cell ids in \a desc into groups each referring to one
640 * cell of \a this mesh. Its every element (except the last one) is an index
641 * pointing to the first id of a group of cells. For example cells of the
642 * result mesh bounding the cell #1 of \a this mesh are described by following
644 * [ \a descIndx[1], \a descIndx[2] ) and the cell ids are
645 * \a desc[ \a descIndx[1] ], \a desc[ \a descIndx[1] + 1], ...
646 * Number of cells of the result mesh sharing the *i*-th cell of \a this mesh is
647 * \a descIndx[ *i*+1 ] - \a descIndx[ *i* ].
648 * \param [in,out] revDesc - the array containing cell ids of \a this mesh bounded
649 * by each cell of the result mesh.
650 * \param [in,out] revDescIndx - the array, of length one more than number of cells
651 * in the result mesh,
652 * dividing cell ids in \a revDesc into groups each referring to one
653 * cell of the result mesh the same way as \a descIndx divides \a desc.
654 * \return MEDCouplingUMesh * - a new instance of MEDCouplingUMesh. The caller is to
655 * delete this mesh using decrRef() as it is no more needed.
656 * \throw If the coordinates array is not set.
657 * \throw If the nodal connectivity of cells is node defined.
658 * \throw If \a desc == NULL || \a descIndx == NULL || \a revDesc == NULL || \a
659 * revDescIndx == NULL.
661 * \if ENABLE_EXAMPLES
662 * \ref cpp_mcumesh_buildDescendingConnectivity "Here is a C++ example".<br>
663 * \ref py_mcumesh_buildDescendingConnectivity "Here is a Python example".
665 * \sa buildDescendingConnectivity2()
667 MEDCouplingUMesh *MEDCouplingUMesh::buildDescendingConnectivity(DataArrayInt *desc, DataArrayInt *descIndx, DataArrayInt *revDesc, DataArrayInt *revDescIndx) const
669 return buildDescendingConnectivityGen<MinusOneSonsGenerator>(desc,descIndx,revDesc,revDescIndx,MEDCouplingFastNbrer);
673 * \a this has to have a mesh dimension equal to 3. If it is not the case an INTERP_KERNEL::Exception will be thrown.
674 * This behaves exactly as MEDCouplingUMesh::buildDescendingConnectivity does except that this method compute directly the transition from mesh dimension 3 to sub edges (dimension 1)
675 * in one shot. That is to say that this method is equivalent to 2 successive calls to MEDCouplingUMesh::buildDescendingConnectivity.
676 * This method returns 4 arrays and a mesh as MEDCouplingUMesh::buildDescendingConnectivity does.
677 * \sa MEDCouplingUMesh::buildDescendingConnectivity
679 MEDCouplingUMesh *MEDCouplingUMesh::explode3DMeshTo1D(DataArrayInt *desc, DataArrayInt *descIndx, DataArrayInt *revDesc, DataArrayInt *revDescIndx) const
682 if(getMeshDimension()!=3)
683 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::explode3DMeshTo1D : This has to have a mesh dimension to 3 !");
684 return buildDescendingConnectivityGen<MinusTwoSonsGenerator>(desc,descIndx,revDesc,revDescIndx,MEDCouplingFastNbrer);
688 * This method computes the micro edges constituting each cell in \a this. Micro edge is an edge for non quadratic cells. Micro edge is an half edge for quadratic cells.
689 * This method works for both meshes with mesh dimenstion equal to 2 or 3. Dynamical cells are not supported (polygons, polyhedrons...)
691 * \sa explode3DMeshTo1D, buildDescendingConnectiviy
693 MEDCouplingUMesh *MEDCouplingUMesh::explodeMeshIntoMicroEdges(DataArrayInt *desc, DataArrayInt *descIndx, DataArrayInt *revDesc, DataArrayInt *revDescIndx) const
696 switch(getMeshDimension())
699 return buildDescendingConnectivityGen<MicroEdgesGenerator2D>(desc,descIndx,revDesc,revDescIndx,MEDCouplingFastNbrer);
701 return buildDescendingConnectivityGen<MicroEdgesGenerator2D>(desc,descIndx,revDesc,revDescIndx,MEDCouplingFastNbrer);
703 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::explodeMeshIntoMicroEdges : Only 2D and 3D supported !");
708 * Creates a new MEDCouplingUMesh containing cells, of dimension one less than \a
709 * this->getMeshDimension(), that bound cells of \a this mesh. In
710 * addition arrays describing correspondence between cells of \a this and the result
711 * meshes are returned. The arrays \a desc and \a descIndx (\ref numbering-indirect) describe the descending
712 * connectivity, i.e. enumerate cells of the result mesh bounding each cell of \a this
713 * mesh. This method differs from buildDescendingConnectivity() in that apart
714 * from cell ids, \a desc returns mutual orientation of cells in \a this and the
715 * result meshes. So a positive id means that order of nodes in corresponding cells
716 * of two meshes is same, and a negative id means a reverse order of nodes. Since a
717 * cell with id #0 can't be negative, the array \a desc returns ids in FORTRAN mode,
718 * i.e. cell ids are one-based.
719 * Arrays \a revDesc and \a revDescIndx (\ref numbering-indirect) describe the reverse descending connectivity,
720 * i.e. enumerate cells of \a this mesh bounded by each cell of the result mesh.
721 * \warning For speed reasons, this method does not check if node ids in the nodal
722 * connectivity correspond to the size of node coordinates array.
723 * \warning Cells of the result mesh are \b not sorted by geometric type, hence,
724 * to write this mesh to the MED file, its cells must be sorted using
725 * sortCellsInMEDFileFrmt().
726 * \param [in,out] desc - the array containing cell ids of the result mesh bounding
727 * each cell of \a this mesh.
728 * \param [in,out] descIndx - the array, of length \a this->getNumberOfCells() + 1,
729 * dividing cell ids in \a desc into groups each referring to one
730 * cell of \a this mesh. Its every element (except the last one) is an index
731 * pointing to the first id of a group of cells. For example cells of the
732 * result mesh bounding the cell #1 of \a this mesh are described by following
734 * [ \a descIndx[1], \a descIndx[2] ) and the cell ids are
735 * \a desc[ \a descIndx[1] ], \a desc[ \a descIndx[1] + 1], ...
736 * Number of cells of the result mesh sharing the *i*-th cell of \a this mesh is
737 * \a descIndx[ *i*+1 ] - \a descIndx[ *i* ].
738 * \param [in,out] revDesc - the array containing cell ids of \a this mesh bounded
739 * by each cell of the result mesh.
740 * \param [in,out] revDescIndx - the array, of length one more than number of cells
741 * in the result mesh,
742 * dividing cell ids in \a revDesc into groups each referring to one
743 * cell of the result mesh the same way as \a descIndx divides \a desc.
744 * \return MEDCouplingUMesh * - a new instance of MEDCouplingUMesh. This result mesh
745 * shares the node coordinates array with \a this mesh. The caller is to
746 * delete this mesh using decrRef() as it is no more needed.
747 * \throw If the coordinates array is not set.
748 * \throw If the nodal connectivity of cells is node defined.
749 * \throw If \a desc == NULL || \a descIndx == NULL || \a revDesc == NULL || \a
750 * revDescIndx == NULL.
752 * \if ENABLE_EXAMPLES
753 * \ref cpp_mcumesh_buildDescendingConnectivity2 "Here is a C++ example".<br>
754 * \ref py_mcumesh_buildDescendingConnectivity2 "Here is a Python example".
756 * \sa buildDescendingConnectivity()
758 MEDCouplingUMesh *MEDCouplingUMesh::buildDescendingConnectivity2(DataArrayInt *desc, DataArrayInt *descIndx, DataArrayInt *revDesc, DataArrayInt *revDescIndx) const
760 return buildDescendingConnectivityGen<MinusOneSonsGenerator>(desc,descIndx,revDesc,revDescIndx,MEDCouplingOrientationSensitiveNbrer);
764 * \b WARNING this method do the assumption that connectivity lies on the coordinates set.
765 * For speed reasons no check of this will be done. This method calls
766 * MEDCouplingUMesh::buildDescendingConnectivity to compute the result.
767 * This method lists cell by cell in \b this which are its neighbors. To compute the result
768 * only connectivities are considered.
769 * The neighbor cells of cell having id 'cellId' are neighbors[neighborsIndx[cellId]:neighborsIndx[cellId+1]].
770 * The format of return is hence \ref numbering-indirect.
772 * \param [out] neighbors is an array storing all the neighbors of all cells in \b this. This array is newly
773 * allocated and should be dealt by the caller. \b neighborsIndx 2nd output
774 * parameter allows to select the right part in this array (\ref numbering-indirect). The number of tuples
775 * is equal to the last values in \b neighborsIndx.
776 * \param [out] neighborsIndx is an array of size this->getNumberOfCells()+1 newly allocated and should be
777 * dealt by the caller. This arrays allow to use the first output parameter \b neighbors (\ref numbering-indirect).
779 void MEDCouplingUMesh::computeNeighborsOfCells(DataArrayInt *&neighbors, DataArrayInt *&neighborsIndx) const
781 MCAuto<DataArrayInt> desc=DataArrayInt::New();
782 MCAuto<DataArrayInt> descIndx=DataArrayInt::New();
783 MCAuto<DataArrayInt> revDesc=DataArrayInt::New();
784 MCAuto<DataArrayInt> revDescIndx=DataArrayInt::New();
785 MCAuto<MEDCouplingUMesh> meshDM1=buildDescendingConnectivity(desc,descIndx,revDesc,revDescIndx);
787 ComputeNeighborsOfCellsAdv(desc,descIndx,revDesc,revDescIndx,neighbors,neighborsIndx);
790 void MEDCouplingUMesh::computeCellNeighborhoodFromNodesOne(const DataArrayInt *nodeNeigh, const DataArrayInt *nodeNeighI, MCAuto<DataArrayInt>& cellNeigh, MCAuto<DataArrayInt>& cellNeighIndex) const
792 if(!nodeNeigh || !nodeNeighI)
793 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::computeCellNeighborhoodFromNodesOne : null pointer !");
794 checkConsistencyLight();
795 nodeNeigh->checkAllocated(); nodeNeighI->checkAllocated();
796 nodeNeigh->checkNbOfComps(1,"MEDCouplingUMesh::computeCellNeighborhoodFromNodesOne : node neigh");
797 nodeNeighI->checkNbOfComps(1,"MEDCouplingUMesh::computeCellNeighborhoodFromNodesOne : node neigh index");
798 nodeNeighI->checkNbOfTuples(1+getNumberOfNodes(),"MEDCouplingUMesh::computeCellNeighborhoodFromNodesOne : invalid length");
799 int nbCells(getNumberOfCells());
800 const int *c(_nodal_connec->begin()),*ci(_nodal_connec_index->begin()),*ne(nodeNeigh->begin()),*nei(nodeNeighI->begin());
801 cellNeigh=DataArrayInt::New(); cellNeigh->alloc(0,1); cellNeighIndex=DataArrayInt::New(); cellNeighIndex->alloc(1,1); cellNeighIndex->setIJ(0,0,0);
802 for(int i=0;i<nbCells;i++)
805 for(const int *it=c+ci[i]+1;it!=c+ci[i+1];it++)
807 s.insert(ne+nei[*it],ne+nei[*it+1]);
809 cellNeigh->insertAtTheEnd(s.begin(),s.end());
810 cellNeighIndex->pushBackSilent(cellNeigh->getNumberOfTuples());
815 * This method is called by MEDCouplingUMesh::computeNeighborsOfCells. This methods performs the algorithm
816 * of MEDCouplingUMesh::computeNeighborsOfCells.
817 * This method is useful for users that want to reduce along a criterion the set of neighbours cell. This is
818 * typically the case to extract a set a neighbours,
819 * excluding a set of meshdim-1 cells in input descending connectivity.
820 * Typically \b desc, \b descIndx, \b revDesc and \b revDescIndx (\ref numbering-indirect) input params are
821 * the result of MEDCouplingUMesh::buildDescendingConnectivity.
822 * This method lists cell by cell in \b this which are its neighbors. To compute the result only connectivities
824 * The neighbor cells of cell having id 'cellId' are neighbors[neighborsIndx[cellId]:neighborsIndx[cellId+1]].
826 * \param [in] desc descending connectivity array.
827 * \param [in] descIndx descending connectivity index array used to walk through \b desc (\ref numbering-indirect).
828 * \param [in] revDesc reverse descending connectivity array.
829 * \param [in] revDescIndx reverse descending connectivity index array used to walk through \b revDesc (\ref numbering-indirect).
830 * \param [out] neighbors is an array storing all the neighbors of all cells in \b this. This array is newly allocated and should be dealt by the caller. \b neighborsIndx 2nd output
831 * parameter allows to select the right part in this array. The number of tuples is equal to the last values in \b neighborsIndx.
832 * \param [out] neighborsIndx is an array of size this->getNumberOfCells()+1 newly allocated and should be dealt by the caller. This arrays allow to use the first output parameter \b neighbors.
834 void MEDCouplingUMesh::ComputeNeighborsOfCellsAdv(const DataArrayInt *desc, const DataArrayInt *descIndx, const DataArrayInt *revDesc, const DataArrayInt *revDescIndx,
835 DataArrayInt *&neighbors, DataArrayInt *&neighborsIndx)
837 if(!desc || !descIndx || !revDesc || !revDescIndx)
838 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ComputeNeighborsOfCellsAdv some input array is empty !");
839 const int *descPtr=desc->begin();
840 const int *descIPtr=descIndx->begin();
841 const int *revDescPtr=revDesc->begin();
842 const int *revDescIPtr=revDescIndx->begin();
844 int nbCells=descIndx->getNumberOfTuples()-1;
845 MCAuto<DataArrayInt> out0=DataArrayInt::New();
846 MCAuto<DataArrayInt> out1=DataArrayInt::New(); out1->alloc(nbCells+1,1);
847 int *out1Ptr=out1->getPointer();
849 out0->reserve(desc->getNumberOfTuples());
850 for(int i=0;i<nbCells;i++,descIPtr++,out1Ptr++)
852 for(const int *w1=descPtr+descIPtr[0];w1!=descPtr+descIPtr[1];w1++)
854 std::set<int> s(revDescPtr+revDescIPtr[*w1],revDescPtr+revDescIPtr[(*w1)+1]);
856 out0->insertAtTheEnd(s.begin(),s.end());
858 *out1Ptr=out0->getNumberOfTuples();
860 neighbors=out0.retn();
861 neighborsIndx=out1.retn();
865 * Explodes \a this into edges whatever its dimension.
867 MCAuto<MEDCouplingUMesh> MEDCouplingUMesh::explodeIntoEdges(MCAuto<DataArrayInt>& desc, MCAuto<DataArrayInt>& descIndex, MCAuto<DataArrayInt>& revDesc, MCAuto<DataArrayInt>& revDescIndx) const
870 int mdim(getMeshDimension());
871 desc=DataArrayInt::New(); descIndex=DataArrayInt::New(); revDesc=DataArrayInt::New(); revDescIndx=DataArrayInt::New();
872 MCAuto<MEDCouplingUMesh> mesh1D;
877 mesh1D=explode3DMeshTo1D(desc,descIndex,revDesc,revDescIndx);
882 mesh1D=buildDescendingConnectivity(desc,descIndex,revDesc,revDescIndx);
887 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::computeNeighborsOfNodes : Mesh dimension supported are [3,2] !");
894 * \b WARNING this method do the assumption that connectivity lies on the coordinates set.
895 * For speed reasons no check of this will be done. This method calls
896 * MEDCouplingUMesh::buildDescendingConnectivity to compute the result.
897 * This method lists node by node in \b this which are its neighbors. To compute the result
898 * only connectivities are considered.
899 * The neighbor nodes of node having id 'nodeId' are neighbors[neighborsIndx[cellId]:neighborsIndx[cellId+1]].
901 * \param [out] neighbors is an array storing all the neighbors of all nodes in \b this. This array
902 * is newly allocated and should be dealt by the caller. \b neighborsIndx 2nd output
903 * parameter allows to select the right part in this array (\ref numbering-indirect).
904 * The number of tuples is equal to the last values in \b neighborsIndx.
905 * \param [out] neighborsIdx is an array of size this->getNumberOfCells()+1 newly allocated and should
906 * be dealt by the caller. This arrays allow to use the first output parameter \b neighbors.
908 * \sa MEDCouplingUMesh::computeEnlargedNeighborsOfNodes
910 void MEDCouplingUMesh::computeNeighborsOfNodes(DataArrayInt *&neighbors, DataArrayInt *&neighborsIdx) const
913 int mdim(getMeshDimension()),nbNodes(getNumberOfNodes());
914 MCAuto<DataArrayInt> desc(DataArrayInt::New()),descIndx(DataArrayInt::New()),revDesc(DataArrayInt::New()),revDescIndx(DataArrayInt::New());
915 MCConstAuto<MEDCouplingUMesh> mesh1D;
920 mesh1D=explode3DMeshTo1D(desc,descIndx,revDesc,revDescIndx);
925 mesh1D=buildDescendingConnectivity(desc,descIndx,revDesc,revDescIndx);
930 mesh1D.takeRef(this);
935 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::computeNeighborsOfNodes : Mesh dimension supported are [3,2,1] !");
938 desc=DataArrayInt::New(); descIndx=DataArrayInt::New(); revDesc=0; revDescIndx=0;
939 mesh1D->getReverseNodalConnectivity(desc,descIndx);
940 MCAuto<DataArrayInt> ret0(DataArrayInt::New());
941 ret0->alloc(desc->getNumberOfTuples(),1);
942 int *r0Pt(ret0->getPointer());
943 const int *c1DPtr(mesh1D->getNodalConnectivity()->begin()),*rn(desc->begin()),*rni(descIndx->begin());
944 for(int i=0;i<nbNodes;i++,rni++)
946 for(const int *oneDCellIt=rn+rni[0];oneDCellIt!=rn+rni[1];oneDCellIt++)
947 *r0Pt++=c1DPtr[3*(*oneDCellIt)+1]==i?c1DPtr[3*(*oneDCellIt)+2]:c1DPtr[3*(*oneDCellIt)+1];
949 neighbors=ret0.retn();
950 neighborsIdx=descIndx.retn();
954 * Computes enlarged neighbors for each nodes in \a this. The behavior of this method is close to MEDCouplingUMesh::computeNeighborsOfNodes except that the neighborhood of each node is wider here.
955 * A node j is considered to be in the neighborhood of i if and only if there is a cell in \a this containing in its nodal connectivity both i and j.
956 * This method is useful to find ghost cells of a part of a mesh with a code based on fields on nodes.
958 * \sa MEDCouplingUMesh::computeNeighborsOfNodes
960 void MEDCouplingUMesh::computeEnlargedNeighborsOfNodes(MCAuto<DataArrayInt> &neighbors, MCAuto<DataArrayInt>& neighborsIdx) const
963 int nbOfNodes(getNumberOfNodes());
964 const int *conn(_nodal_connec->begin()),*connIndex(_nodal_connec_index->begin());
965 int nbOfCells(getNumberOfCells());
966 std::vector< std::set<int> > st0(nbOfNodes);
967 for(int eltId=0;eltId<nbOfCells;eltId++)
969 const int *strtNdlConnOfCurCell(conn+connIndex[eltId]+1),*endNdlConnOfCurCell(conn+connIndex[eltId+1]);
970 std::set<int> s(strtNdlConnOfCurCell,endNdlConnOfCurCell); s.erase(-1); //for polyhedrons
971 for(std::set<int>::const_iterator iter2=s.begin();iter2!=s.end();iter2++)
972 st0[*iter2].insert(s.begin(),s.end());
974 neighborsIdx=DataArrayInt::New(); neighborsIdx->alloc(nbOfNodes+1,1); neighborsIdx->setIJ(0,0,0);
976 int *neighIdx(neighborsIdx->getPointer());
977 for(std::vector< std::set<int> >::const_iterator it=st0.begin();it!=st0.end();it++,neighIdx++)
978 neighIdx[1]=neighIdx[0]+(*it).size()-1;
980 neighbors=DataArrayInt::New(); neighbors->alloc(neighborsIdx->back(),1);
982 const int *neighIdx(neighborsIdx->begin());
983 int *neigh(neighbors->getPointer()),nodeId(0);
984 for(std::vector< std::set<int> >::const_iterator it=st0.begin();it!=st0.end();it++,neighIdx++,nodeId++)
986 std::set<int> s(*it); s.erase(nodeId);
987 std::copy(s.begin(),s.end(),neigh+*neighIdx);
993 * Converts specified cells to either polygons (if \a this is a 2D mesh) or
994 * polyhedrons (if \a this is a 3D mesh). The cells to convert are specified by an
995 * array of cell ids. Pay attention that after conversion all algorithms work slower
996 * with \a this mesh than before conversion. <br> If an exception is thrown during the
997 * conversion due presence of invalid ids in the array of cells to convert, as a
998 * result \a this mesh contains some already converted elements. In this case the 2D
999 * mesh remains valid but 3D mesh becomes \b inconsistent!
1000 * \warning This method can significantly modify the order of geometric types in \a this,
1001 * hence, to write this mesh to the MED file, its cells must be sorted using
1002 * sortCellsInMEDFileFrmt().
1003 * \param [in] cellIdsToConvertBg - the array holding ids of cells to convert.
1004 * \param [in] cellIdsToConvertEnd - a pointer to the last-plus-one-th element of \a
1005 * cellIdsToConvertBg.
1006 * \throw If the coordinates array is not set.
1007 * \throw If the nodal connectivity of cells is node defined.
1008 * \throw If dimension of \a this mesh is not either 2 or 3.
1010 * \if ENABLE_EXAMPLES
1011 * \ref cpp_mcumesh_convertToPolyTypes "Here is a C++ example".<br>
1012 * \ref py_mcumesh_convertToPolyTypes "Here is a Python example".
1015 void MEDCouplingUMesh::convertToPolyTypes(const int *cellIdsToConvertBg, const int *cellIdsToConvertEnd)
1017 checkFullyDefined();
1018 int dim=getMeshDimension();
1020 throw INTERP_KERNEL::Exception("Invalid mesh dimension : must be 2 or 3 !");
1021 int nbOfCells(getNumberOfCells());
1024 const int *connIndex=_nodal_connec_index->begin();
1025 int *conn=_nodal_connec->getPointer();
1026 for(const int *iter=cellIdsToConvertBg;iter!=cellIdsToConvertEnd;iter++)
1028 if(*iter>=0 && *iter<nbOfCells)
1030 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[connIndex[*iter]]);
1031 if(!cm.isQuadratic())
1032 conn[connIndex[*iter]]=INTERP_KERNEL::NORM_POLYGON;
1034 conn[connIndex[*iter]]=INTERP_KERNEL::NORM_QPOLYG;
1038 std::ostringstream oss; oss << "MEDCouplingUMesh::convertToPolyTypes : On rank #" << std::distance(cellIdsToConvertBg,iter) << " value is " << *iter << " which is not";
1039 oss << " in range [0," << nbOfCells << ") !";
1040 throw INTERP_KERNEL::Exception(oss.str());
1046 int *connIndex(_nodal_connec_index->getPointer());
1047 const int *connOld(_nodal_connec->getConstPointer());
1048 MCAuto<DataArrayInt> connNew(DataArrayInt::New()),connNewI(DataArrayInt::New()); connNew->alloc(0,1); connNewI->alloc(1,1); connNewI->setIJ(0,0,0);
1049 std::vector<bool> toBeDone(nbOfCells,false);
1050 for(const int *iter=cellIdsToConvertBg;iter!=cellIdsToConvertEnd;iter++)
1052 if(*iter>=0 && *iter<nbOfCells)
1053 toBeDone[*iter]=true;
1056 std::ostringstream oss; oss << "MEDCouplingUMesh::convertToPolyTypes : On rank #" << std::distance(cellIdsToConvertBg,iter) << " value is " << *iter << " which is not";
1057 oss << " in range [0," << nbOfCells << ") !";
1058 throw INTERP_KERNEL::Exception(oss.str());
1061 for(int cellId=0;cellId<nbOfCells;cellId++)
1063 int pos(connIndex[cellId]),posP1(connIndex[cellId+1]);
1064 int lgthOld(posP1-pos-1);
1065 if(toBeDone[cellId])
1067 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)connOld[pos]);
1068 unsigned nbOfFaces(cm.getNumberOfSons2(connOld+pos+1,lgthOld));
1069 int *tmp(new int[nbOfFaces*lgthOld+1]);
1070 int *work=tmp; *work++=INTERP_KERNEL::NORM_POLYHED;
1071 for(unsigned j=0;j<nbOfFaces;j++)
1073 INTERP_KERNEL::NormalizedCellType type;
1074 unsigned offset=cm.fillSonCellNodalConnectivity2(j,connOld+pos+1,lgthOld,work,type);
1078 std::size_t newLgth(std::distance(tmp,work)-1);//-1 for last -1
1079 connNew->pushBackValsSilent(tmp,tmp+newLgth);
1080 connNewI->pushBackSilent(connNewI->back()+(int)newLgth);
1085 connNew->pushBackValsSilent(connOld+pos,connOld+posP1);
1086 connNewI->pushBackSilent(connNewI->back()+posP1-pos);
1089 setConnectivity(connNew,connNewI,false);//false because computeTypes called just behind.
1095 * Converts all cells to either polygons (if \a this is a 2D mesh) or
1096 * polyhedrons (if \a this is a 3D mesh).
1097 * \warning As this method is purely for user-friendliness and no optimization is
1098 * done to avoid construction of a useless vector, this method can be costly
1100 * \throw If the coordinates array is not set.
1101 * \throw If the nodal connectivity of cells is node defined.
1102 * \throw If dimension of \a this mesh is not either 2 or 3.
1104 void MEDCouplingUMesh::convertAllToPoly()
1106 int nbOfCells=getNumberOfCells();
1107 std::vector<int> cellIds(nbOfCells);
1108 for(int i=0;i<nbOfCells;i++)
1110 convertToPolyTypes(&cellIds[0],&cellIds[0]+cellIds.size());
1114 * Fixes nodal connectivity of invalid cells of type NORM_POLYHED. This method
1115 * expects that all NORM_POLYHED cells have connectivity similar to that of prismatic
1116 * volumes like NORM_HEXA8, NORM_PENTA6 etc., i.e. the first half of nodes describes a
1117 * base facet of the volume and the second half of nodes describes an opposite facet
1118 * having the same number of nodes as the base one. This method converts such
1119 * connectivity to a valid polyhedral format where connectivity of each facet is
1120 * explicitly described and connectivity of facets are separated by -1. If \a this mesh
1121 * contains a NORM_POLYHED cell with a valid connectivity, or an invalid connectivity is
1122 * not as expected, an exception is thrown and the mesh remains unchanged. Care of
1123 * a correct orientation of the first facet of a polyhedron, else orientation of a
1124 * corrected cell is reverse.<br>
1125 * This method is useful to build an extruded unstructured mesh with polyhedrons as
1126 * it releases the user from boring description of polyhedra connectivity in the valid
1128 * \throw If \a this->getMeshDimension() != 3.
1129 * \throw If \a this->getSpaceDimension() != 3.
1130 * \throw If the nodal connectivity of cells is not defined.
1131 * \throw If the coordinates array is not set.
1132 * \throw If \a this mesh contains polyhedrons with the valid connectivity.
1133 * \throw If \a this mesh contains polyhedrons with odd number of nodes.
1135 * \if ENABLE_EXAMPLES
1136 * \ref cpp_mcumesh_arePolyhedronsNotCorrectlyOriented "Here is a C++ example".<br>
1137 * \ref py_mcumesh_arePolyhedronsNotCorrectlyOriented "Here is a Python example".
1140 void MEDCouplingUMesh::convertExtrudedPolyhedra()
1142 checkFullyDefined();
1143 if(getMeshDimension()!=3 || getSpaceDimension()!=3)
1144 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertExtrudedPolyhedra works on umeshes with meshdim equal to 3 and spaceDim equal to 3 too!");
1145 int nbOfCells=getNumberOfCells();
1146 MCAuto<DataArrayInt> newCi=DataArrayInt::New();
1147 newCi->alloc(nbOfCells+1,1);
1148 int *newci=newCi->getPointer();
1149 const int *ci=_nodal_connec_index->getConstPointer();
1150 const int *c=_nodal_connec->getConstPointer();
1152 for(int i=0;i<nbOfCells;i++)
1154 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)c[ci[i]];
1155 if(type==INTERP_KERNEL::NORM_POLYHED)
1157 if(std::count(c+ci[i]+1,c+ci[i+1],-1)!=0)
1159 std::ostringstream oss; oss << "MEDCouplingUMesh::convertExtrudedPolyhedra : cell # " << i << " is a polhedron BUT it has NOT exactly 1 face !";
1160 throw INTERP_KERNEL::Exception(oss.str());
1162 std::size_t n2=std::distance(c+ci[i]+1,c+ci[i+1]);
1165 std::ostringstream oss; oss << "MEDCouplingUMesh::convertExtrudedPolyhedra : cell # " << i << " is a polhedron with 1 face but there is a mismatch of number of nodes in face should be even !";
1166 throw INTERP_KERNEL::Exception(oss.str());
1169 newci[i+1]=7*n1+2+newci[i];//6*n1 (nodal length) + n1+2 (number of faces) - 1 (number of '-1' separator is equal to number of faces -1) + 1 (for cell type)
1172 newci[i+1]=(ci[i+1]-ci[i])+newci[i];
1174 MCAuto<DataArrayInt> newC=DataArrayInt::New();
1175 newC->alloc(newci[nbOfCells],1);
1176 int *newc=newC->getPointer();
1177 for(int i=0;i<nbOfCells;i++)
1179 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)c[ci[i]];
1180 if(type==INTERP_KERNEL::NORM_POLYHED)
1182 std::size_t n1=std::distance(c+ci[i]+1,c+ci[i+1])/2;
1183 newc=std::copy(c+ci[i],c+ci[i]+n1+1,newc);
1185 for(std::size_t j=0;j<n1;j++)
1187 newc[j]=c[ci[i]+1+n1+(n1-j)%n1];
1189 newc[n1+5*j+1]=c[ci[i]+1+j];
1190 newc[n1+5*j+2]=c[ci[i]+1+j+n1];
1191 newc[n1+5*j+3]=c[ci[i]+1+(j+1)%n1+n1];
1192 newc[n1+5*j+4]=c[ci[i]+1+(j+1)%n1];
1197 newc=std::copy(c+ci[i],c+ci[i+1],newc);
1199 _nodal_connec_index->decrRef(); _nodal_connec_index=newCi.retn();
1200 _nodal_connec->decrRef(); _nodal_connec=newC.retn();
1205 * Converts all polygons (if \a this is a 2D mesh) or polyhedrons (if \a this is a 3D
1206 * mesh) to cells of classical types. This method is opposite to convertToPolyTypes().
1207 * \warning Cells of the result mesh are \b not sorted by geometric type, hence,
1208 * to write this mesh to the MED file, its cells must be sorted using
1209 * sortCellsInMEDFileFrmt().
1210 * \warning Cells (and most notably polyhedrons) must be correctly oriented for this to work
1211 * properly. See orientCorrectlyPolyhedrons() and arePolyhedronsNotCorrectlyOriented().
1212 * \return \c true if at least one cell has been converted, \c false else. In the
1213 * last case the nodal connectivity remains unchanged.
1214 * \throw If the coordinates array is not set.
1215 * \throw If the nodal connectivity of cells is not defined.
1216 * \throw If \a this->getMeshDimension() < 0.
1218 bool MEDCouplingUMesh::unPolyze()
1220 checkFullyDefined();
1221 int mdim=getMeshDimension();
1223 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::unPolyze works on umeshes with meshdim equals to 0, 1 2 or 3 !");
1226 int nbOfCells=getNumberOfCells();
1229 int initMeshLgth=getNodalConnectivityArrayLen();
1230 int *conn=_nodal_connec->getPointer();
1231 int *index=_nodal_connec_index->getPointer();
1236 for(int i=0;i<nbOfCells;i++)
1238 lgthOfCurCell=index[i+1]-posOfCurCell;
1239 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)conn[posOfCurCell];
1240 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(type);
1241 INTERP_KERNEL::NormalizedCellType newType=INTERP_KERNEL::NORM_ERROR;
1245 switch(cm.getDimension())
1249 INTERP_KERNEL::AutoPtr<int> tmp=new int[lgthOfCurCell-1];
1250 std::copy(conn+posOfCurCell+1,conn+posOfCurCell+lgthOfCurCell,(int *)tmp);
1251 newType=INTERP_KERNEL::CellSimplify::tryToUnPoly2D(cm.isQuadratic(),tmp,lgthOfCurCell-1,conn+newPos+1,newLgth);
1256 int nbOfFaces,lgthOfPolyhConn;
1257 INTERP_KERNEL::AutoPtr<int> zipFullReprOfPolyh=INTERP_KERNEL::CellSimplify::getFullPolyh3DCell(type,conn+posOfCurCell+1,lgthOfCurCell-1,nbOfFaces,lgthOfPolyhConn);
1258 newType=INTERP_KERNEL::CellSimplify::tryToUnPoly3D(zipFullReprOfPolyh,nbOfFaces,lgthOfPolyhConn,conn+newPos+1,newLgth);
1263 newType=(lgthOfCurCell==3)?INTERP_KERNEL::NORM_SEG2:INTERP_KERNEL::NORM_POLYL;
1267 ret=ret || (newType!=type);
1268 conn[newPos]=newType;
1270 posOfCurCell=index[i+1];
1275 std::copy(conn+posOfCurCell,conn+posOfCurCell+lgthOfCurCell,conn+newPos);
1276 newPos+=lgthOfCurCell;
1277 posOfCurCell+=lgthOfCurCell;
1281 if(newPos!=initMeshLgth)
1282 _nodal_connec->reAlloc(newPos);
1289 * This method expects that spaceDimension is equal to 3 and meshDimension equal to 3.
1290 * This method performs operation only on polyhedrons in \b this. If no polyhedrons exists in \b this, \b this remains unchanged.
1291 * This method allows to merge if any coplanar 3DSurf cells that may appear in some polyhedrons cells.
1293 * \param [in] eps is a relative precision that allows to establish if some 3D plane are coplanar or not. This epsilon is used to recenter around origin to have maximal
1296 void MEDCouplingUMesh::simplifyPolyhedra(double eps)
1298 checkFullyDefined();
1299 if(getMeshDimension()!=3 || getSpaceDimension()!=3)
1300 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::simplifyPolyhedra : works on meshdimension 3 and spaceDimension 3 !");
1301 MCAuto<DataArrayDouble> coords=getCoords()->deepCopy();
1302 coords->recenterForMaxPrecision(eps);
1304 int nbOfCells=getNumberOfCells();
1305 const int *conn=_nodal_connec->getConstPointer();
1306 const int *index=_nodal_connec_index->getConstPointer();
1307 MCAuto<DataArrayInt> connINew=DataArrayInt::New();
1308 connINew->alloc(nbOfCells+1,1);
1309 int *connINewPtr=connINew->getPointer(); *connINewPtr++=0;
1310 MCAuto<DataArrayInt> connNew=DataArrayInt::New(); connNew->alloc(0,1);
1312 for(int i=0;i<nbOfCells;i++,connINewPtr++)
1314 if(conn[index[i]]==(int)INTERP_KERNEL::NORM_POLYHED)
1316 SimplifyPolyhedronCell(eps,coords,conn+index[i],conn+index[i+1],connNew);
1320 connNew->insertAtTheEnd(conn+index[i],conn+index[i+1]);
1321 *connINewPtr=connNew->getNumberOfTuples();
1324 setConnectivity(connNew,connINew,false);
1328 * This method returns all node ids used in the connectivity of \b this. The data array returned has to be dealt by the caller.
1329 * The returned node ids are sorted ascendingly. This method is close to MEDCouplingUMesh::getNodeIdsInUse except
1330 * the format of the returned DataArrayInt instance.
1332 * \return a newly allocated DataArrayInt sorted ascendingly of fetched node ids.
1333 * \sa MEDCouplingUMesh::getNodeIdsInUse, areAllNodesFetched
1335 DataArrayInt *MEDCouplingUMesh::computeFetchedNodeIds() const
1337 checkConnectivityFullyDefined();
1338 const int *maxEltPt(std::max_element(_nodal_connec->begin(),_nodal_connec->end()));
1339 int maxElt(maxEltPt==_nodal_connec->end()?0:std::abs(*maxEltPt)+1);
1340 std::vector<bool> retS(maxElt,false);
1341 computeNodeIdsAlg(retS);
1342 return DataArrayInt::BuildListOfSwitchedOn(retS);
1346 * \param [in,out] nodeIdsInUse an array of size typically equal to nbOfNodes.
1347 * \sa MEDCouplingUMesh::getNodeIdsInUse, areAllNodesFetched
1349 void MEDCouplingUMesh::computeNodeIdsAlg(std::vector<bool>& nodeIdsInUse) const
1351 int nbOfNodes((int)nodeIdsInUse.size()),nbOfCells(getNumberOfCells());
1352 const int *connIndex(_nodal_connec_index->getConstPointer()),*conn(_nodal_connec->getConstPointer());
1353 for(int i=0;i<nbOfCells;i++)
1354 for(int j=connIndex[i]+1;j<connIndex[i+1];j++)
1357 if(conn[j]<nbOfNodes)
1358 nodeIdsInUse[conn[j]]=true;
1361 std::ostringstream oss; oss << "MEDCouplingUMesh::computeNodeIdsAlg : In cell #" << i << " presence of node id " << conn[j] << " not in [0," << nbOfNodes << ") !";
1362 throw INTERP_KERNEL::Exception(oss.str());
1369 struct MEDCouplingAccVisit
1371 MEDCouplingAccVisit():_new_nb_of_nodes(0) { }
1372 int operator()(int val) { if(val!=-1) return _new_nb_of_nodes++; else return -1; }
1373 int _new_nb_of_nodes;
1379 * Finds nodes not used in any cell and returns an array giving a new id to every node
1380 * by excluding the unused nodes, for which the array holds -1. The result array is
1381 * a mapping in "Old to New" mode.
1382 * \param [out] nbrOfNodesInUse - number of node ids present in the nodal connectivity.
1383 * \return DataArrayInt * - a new instance of DataArrayInt. Its length is \a
1384 * this->getNumberOfNodes(). It holds for each node of \a this mesh either -1
1385 * if the node is unused or a new id else. The caller is to delete this
1386 * array using decrRef() as it is no more needed.
1387 * \throw If the coordinates array is not set.
1388 * \throw If the nodal connectivity of cells is not defined.
1389 * \throw If the nodal connectivity includes an invalid id.
1391 * \if ENABLE_EXAMPLES
1392 * \ref cpp_mcumesh_getNodeIdsInUse "Here is a C++ example".<br>
1393 * \ref py_mcumesh_getNodeIdsInUse "Here is a Python example".
1395 * \sa computeFetchedNodeIds, computeNodeIdsAlg()
1397 DataArrayInt *MEDCouplingUMesh::getNodeIdsInUse(int& nbrOfNodesInUse) const
1400 int nbOfNodes(getNumberOfNodes());
1401 MCAuto<DataArrayInt> ret=DataArrayInt::New();
1402 ret->alloc(nbOfNodes,1);
1403 int *traducer=ret->getPointer();
1404 std::fill(traducer,traducer+nbOfNodes,-1);
1405 int nbOfCells=getNumberOfCells();
1406 const int *connIndex=_nodal_connec_index->getConstPointer();
1407 const int *conn=_nodal_connec->getConstPointer();
1408 for(int i=0;i<nbOfCells;i++)
1409 for(int j=connIndex[i]+1;j<connIndex[i+1];j++)
1412 if(conn[j]<nbOfNodes)
1413 traducer[conn[j]]=1;
1416 std::ostringstream oss; oss << "MEDCouplingUMesh::getNodeIdsInUse : In cell #" << i << " presence of node id " << conn[j] << " not in [0," << nbOfNodes << ") !";
1417 throw INTERP_KERNEL::Exception(oss.str());
1420 nbrOfNodesInUse=(int)std::count(traducer,traducer+nbOfNodes,1);
1421 std::transform(traducer,traducer+nbOfNodes,traducer,MEDCouplingAccVisit());
1426 * This method returns a newly allocated array containing this->getNumberOfCells() tuples and 1 component.
1427 * For each cell in \b this the number of nodes constituting cell is computed.
1428 * For each polyhedron cell, the sum of the number of nodes of each face constituting polyhedron cell is returned.
1429 * So for pohyhedrons some nodes can be counted several times in the returned result.
1431 * \return a newly allocated array
1432 * \sa MEDCouplingUMesh::computeEffectiveNbOfNodesPerCell
1434 DataArrayInt *MEDCouplingUMesh::computeNbOfNodesPerCell() const
1436 checkConnectivityFullyDefined();
1437 int nbOfCells=getNumberOfCells();
1438 MCAuto<DataArrayInt> ret=DataArrayInt::New();
1439 ret->alloc(nbOfCells,1);
1440 int *retPtr=ret->getPointer();
1441 const int *conn=getNodalConnectivity()->getConstPointer();
1442 const int *connI=getNodalConnectivityIndex()->getConstPointer();
1443 for(int i=0;i<nbOfCells;i++,retPtr++)
1445 if(conn[connI[i]]!=(int)INTERP_KERNEL::NORM_POLYHED)
1446 *retPtr=connI[i+1]-connI[i]-1;
1448 *retPtr=connI[i+1]-connI[i]-1-std::count(conn+connI[i]+1,conn+connI[i+1],-1);
1454 * This method computes effective number of nodes per cell. That is to say nodes appearing several times in nodal connectivity of a cell,
1455 * will be counted only once here whereas it will be counted several times in MEDCouplingUMesh::computeNbOfNodesPerCell method.
1457 * \return DataArrayInt * - new object to be deallocated by the caller.
1458 * \sa MEDCouplingUMesh::computeNbOfNodesPerCell
1460 DataArrayInt *MEDCouplingUMesh::computeEffectiveNbOfNodesPerCell() const
1462 checkConnectivityFullyDefined();
1463 int nbOfCells=getNumberOfCells();
1464 MCAuto<DataArrayInt> ret=DataArrayInt::New();
1465 ret->alloc(nbOfCells,1);
1466 int *retPtr=ret->getPointer();
1467 const int *conn=getNodalConnectivity()->getConstPointer();
1468 const int *connI=getNodalConnectivityIndex()->getConstPointer();
1469 for(int i=0;i<nbOfCells;i++,retPtr++)
1471 std::set<int> s(conn+connI[i]+1,conn+connI[i+1]);
1472 if(conn[connI[i]]!=(int)INTERP_KERNEL::NORM_POLYHED)
1473 *retPtr=(int)s.size();
1477 *retPtr=(int)s.size();
1484 * This method returns a newly allocated array containing this->getNumberOfCells() tuples and 1 component.
1485 * For each cell in \b this the number of faces constituting (entity of dimension this->getMeshDimension()-1) cell is computed.
1487 * \return a newly allocated array
1489 DataArrayInt *MEDCouplingUMesh::computeNbOfFacesPerCell() const
1491 checkConnectivityFullyDefined();
1492 int nbOfCells=getNumberOfCells();
1493 MCAuto<DataArrayInt> ret=DataArrayInt::New();
1494 ret->alloc(nbOfCells,1);
1495 int *retPtr=ret->getPointer();
1496 const int *conn=getNodalConnectivity()->getConstPointer();
1497 const int *connI=getNodalConnectivityIndex()->getConstPointer();
1498 for(int i=0;i<nbOfCells;i++,retPtr++,connI++)
1500 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[*connI]);
1501 *retPtr=cm.getNumberOfSons2(conn+connI[0]+1,connI[1]-connI[0]-1);
1507 * Removes unused nodes (the node coordinates array is shorten) and returns an array
1508 * mapping between new and old node ids in "Old to New" mode. -1 values in the returned
1509 * array mean that the corresponding old node is no more used.
1510 * \return DataArrayInt * - a new instance of DataArrayInt of length \a
1511 * this->getNumberOfNodes() before call of this method. The caller is to
1512 * delete this array using decrRef() as it is no more needed.
1513 * \throw If the coordinates array is not set.
1514 * \throw If the nodal connectivity of cells is not defined.
1515 * \throw If the nodal connectivity includes an invalid id.
1516 * \sa areAllNodesFetched
1518 * \if ENABLE_EXAMPLES
1519 * \ref cpp_mcumesh_zipCoordsTraducer "Here is a C++ example".<br>
1520 * \ref py_mcumesh_zipCoordsTraducer "Here is a Python example".
1523 DataArrayInt *MEDCouplingUMesh::zipCoordsTraducer()
1525 return MEDCouplingPointSet::zipCoordsTraducer();
1529 * This method stands if 'cell1' and 'cell2' are equals regarding 'compType' policy.
1530 * The semantic of 'compType' is specified in MEDCouplingPointSet::zipConnectivityTraducer method.
1532 int MEDCouplingUMesh::AreCellsEqual(const int *conn, const int *connI, int cell1, int cell2, int compType)
1537 return AreCellsEqualPolicy0(conn,connI,cell1,cell2);
1539 return AreCellsEqualPolicy1(conn,connI,cell1,cell2);
1541 return AreCellsEqualPolicy2(conn,connI,cell1,cell2);
1543 return AreCellsEqualPolicy2NoType(conn,connI,cell1,cell2);
1545 return AreCellsEqualPolicy7(conn,connI,cell1,cell2);
1547 throw INTERP_KERNEL::Exception("Unknown comparison asked ! Must be in 0,1,2,3 or 7.");
1551 * This method is the last step of the MEDCouplingPointSet::zipConnectivityTraducer with policy 0.
1553 int MEDCouplingUMesh::AreCellsEqualPolicy0(const int *conn, const int *connI, int cell1, int cell2)
1555 if(connI[cell1+1]-connI[cell1]==connI[cell2+1]-connI[cell2])
1556 return std::equal(conn+connI[cell1]+1,conn+connI[cell1+1],conn+connI[cell2]+1)?1:0;
1561 * This method is the last step of the MEDCouplingPointSet::zipConnectivityTraducer with policy 1.
1563 int MEDCouplingUMesh::AreCellsEqualPolicy1(const int *conn, const int *connI, int cell1, int cell2)
1565 int sz=connI[cell1+1]-connI[cell1];
1566 if(sz==connI[cell2+1]-connI[cell2])
1568 if(conn[connI[cell1]]==conn[connI[cell2]])
1570 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[connI[cell1]]);
1571 unsigned dim=cm.getDimension();
1577 INTERP_KERNEL::AutoPtr<int> tmp=new int[sz1];
1578 int *work=std::copy(conn+connI[cell1]+1,conn+connI[cell1+1],(int *)tmp);
1579 std::copy(conn+connI[cell1]+1,conn+connI[cell1+1],work);
1580 work=std::search((int *)tmp,(int *)tmp+sz1,conn+connI[cell2]+1,conn+connI[cell2+1]);
1581 return work!=tmp+sz1?1:0;
1584 return std::equal(conn+connI[cell1]+1,conn+connI[cell1+1],conn+connI[cell2]+1)?1:0;//case of SEG2 and SEG3
1587 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::AreCellsEqualPolicy1 : not implemented yet for meshdim == 3 !");
1594 * This method is the last step of the MEDCouplingPointSet::zipConnectivityTraducer with policy 2.
1596 int MEDCouplingUMesh::AreCellsEqualPolicy2(const int *conn, const int *connI, int cell1, int cell2)
1598 if(connI[cell1+1]-connI[cell1]==connI[cell2+1]-connI[cell2])
1600 if(conn[connI[cell1]]==conn[connI[cell2]])
1602 std::set<int> s1(conn+connI[cell1]+1,conn+connI[cell1+1]);
1603 std::set<int> s2(conn+connI[cell2]+1,conn+connI[cell2+1]);
1611 * This method is less restrictive than AreCellsEqualPolicy2. Here the geometric type is absolutely not taken into account !
1613 int MEDCouplingUMesh::AreCellsEqualPolicy2NoType(const int *conn, const int *connI, int cell1, int cell2)
1615 if(connI[cell1+1]-connI[cell1]==connI[cell2+1]-connI[cell2])
1617 std::set<int> s1(conn+connI[cell1]+1,conn+connI[cell1+1]);
1618 std::set<int> s2(conn+connI[cell2]+1,conn+connI[cell2+1]);
1625 * This method is the last step of the MEDCouplingPointSet::zipConnectivityTraducer with policy 7.
1627 int MEDCouplingUMesh::AreCellsEqualPolicy7(const int *conn, const int *connI, int cell1, int cell2)
1629 int sz=connI[cell1+1]-connI[cell1];
1630 if(sz==connI[cell2+1]-connI[cell2])
1632 if(conn[connI[cell1]]==conn[connI[cell2]])
1634 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[connI[cell1]]);
1635 unsigned dim=cm.getDimension();
1641 INTERP_KERNEL::AutoPtr<int> tmp=new int[sz1];
1642 int *work=std::copy(conn+connI[cell1]+1,conn+connI[cell1+1],(int *)tmp);
1643 std::copy(conn+connI[cell1]+1,conn+connI[cell1+1],work);
1644 work=std::search((int *)tmp,(int *)tmp+sz1,conn+connI[cell2]+1,conn+connI[cell2+1]);
1649 std::reverse_iterator<int *> it1((int *)tmp+sz1);
1650 std::reverse_iterator<int *> it2((int *)tmp);
1651 if(std::search(it1,it2,conn+connI[cell2]+1,conn+connI[cell2+1])!=it2)
1657 return work!=tmp+sz1?1:0;
1660 {//case of SEG2 and SEG3
1661 if(std::equal(conn+connI[cell1]+1,conn+connI[cell1+1],conn+connI[cell2]+1))
1663 if(!cm.isQuadratic())
1665 std::reverse_iterator<const int *> it1(conn+connI[cell1+1]);
1666 std::reverse_iterator<const int *> it2(conn+connI[cell1]+1);
1667 if(std::equal(it1,it2,conn+connI[cell2]+1))
1673 if(conn[connI[cell1]+1]==conn[connI[cell2]+2] && conn[connI[cell1]+2]==conn[connI[cell2]+1] && conn[connI[cell1]+3]==conn[connI[cell2]+3])
1680 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::AreCellsEqualPolicy7 : not implemented yet for meshdim == 3 !");
1688 * This method find cells that are equal (regarding \a compType) in \a this. The comparison is specified
1690 * This method keeps the coordiantes of \a this. This method is time consuming.
1692 * \param [in] compType input specifying the technique used to compare cells each other.
1693 * - 0 : exactly. A cell is detected to be the same if and only if the connectivity is exactly the same without permutation and types same too. This is the strongest policy.
1694 * - 1 : permutation same orientation. cell1 and cell2 are considered equal if the connectivity of cell2 can be deduced by those of cell1 by direct permutation (with exactly the same orientation)
1695 * and their type equal. For 1D mesh the policy 1 is equivalent to 0.
1696 * - 2 : nodal. cell1 and cell2 are equal if and only if cell1 and cell2 have same type and have the same nodes constituting connectivity. This is the laziest policy. This policy
1697 * can be used for users not sensitive to orientation of cell
1698 * \param [in] startCellId specifies the cellId starting from which the equality computation will be carried out. By default it is 0, which it means that all cells in \a this will be scanned.
1699 * \param [out] commonCellsArr common cells ids (\ref numbering-indirect)
1700 * \param [out] commonCellsIArr common cells ids (\ref numbering-indirect)
1701 * \return the correspondance array old to new in a newly allocated array.
1704 void MEDCouplingUMesh::findCommonCells(int compType, int startCellId, DataArrayInt *& commonCellsArr, DataArrayInt *& commonCellsIArr) const
1706 MCAuto<DataArrayInt> revNodal=DataArrayInt::New(),revNodalI=DataArrayInt::New();
1707 getReverseNodalConnectivity(revNodal,revNodalI);
1708 FindCommonCellsAlg(compType,startCellId,_nodal_connec,_nodal_connec_index,revNodal,revNodalI,commonCellsArr,commonCellsIArr);
1711 void MEDCouplingUMesh::FindCommonCellsAlg(int compType, int startCellId, const DataArrayInt *nodal, const DataArrayInt *nodalI, const DataArrayInt *revNodal, const DataArrayInt *revNodalI,
1712 DataArrayInt *& commonCellsArr, DataArrayInt *& commonCellsIArr)
1714 MCAuto<DataArrayInt> commonCells=DataArrayInt::New(),commonCellsI=DataArrayInt::New(); commonCells->alloc(0,1);
1715 int nbOfCells=nodalI->getNumberOfTuples()-1;
1716 commonCellsI->reserve(1); commonCellsI->pushBackSilent(0);
1717 const int *revNodalPtr=revNodal->getConstPointer(),*revNodalIPtr=revNodalI->getConstPointer();
1718 const int *connPtr=nodal->getConstPointer(),*connIPtr=nodalI->getConstPointer();
1719 std::vector<bool> isFetched(nbOfCells,false);
1722 for(int i=0;i<nbOfCells;i++)
1726 const int *connOfNode=std::find_if(connPtr+connIPtr[i]+1,connPtr+connIPtr[i+1],std::bind2nd(std::not_equal_to<int>(),-1));
1727 std::vector<int> v,v2;
1728 if(connOfNode!=connPtr+connIPtr[i+1])
1730 const int *locRevNodal=std::find(revNodalPtr+revNodalIPtr[*connOfNode],revNodalPtr+revNodalIPtr[*connOfNode+1],i);
1731 v2.insert(v2.end(),locRevNodal,revNodalPtr+revNodalIPtr[*connOfNode+1]);
1734 for(;connOfNode!=connPtr+connIPtr[i+1] && v2.size()>1;connOfNode++)
1738 const int *locRevNodal=std::find(revNodalPtr+revNodalIPtr[*connOfNode],revNodalPtr+revNodalIPtr[*connOfNode+1],i);
1739 std::vector<int>::iterator it=std::set_intersection(v.begin(),v.end(),locRevNodal,revNodalPtr+revNodalIPtr[*connOfNode+1],v2.begin());
1740 v2.resize(std::distance(v2.begin(),it));
1744 if(AreCellsEqualInPool(v2,compType,connPtr,connIPtr,commonCells))
1746 int pos=commonCellsI->back();
1747 commonCellsI->pushBackSilent(commonCells->getNumberOfTuples());
1748 for(const int *it=commonCells->begin()+pos;it!=commonCells->end();it++)
1749 isFetched[*it]=true;
1757 for(int i=startCellId;i<nbOfCells;i++)
1761 const int *connOfNode=std::find_if(connPtr+connIPtr[i]+1,connPtr+connIPtr[i+1],std::bind2nd(std::not_equal_to<int>(),-1));
1762 std::vector<int> v,v2;
1763 if(connOfNode!=connPtr+connIPtr[i+1])
1765 v2.insert(v2.end(),revNodalPtr+revNodalIPtr[*connOfNode],revNodalPtr+revNodalIPtr[*connOfNode+1]);
1768 for(;connOfNode!=connPtr+connIPtr[i+1] && v2.size()>1;connOfNode++)
1772 std::vector<int>::iterator it=std::set_intersection(v.begin(),v.end(),revNodalPtr+revNodalIPtr[*connOfNode],revNodalPtr+revNodalIPtr[*connOfNode+1],v2.begin());
1773 v2.resize(std::distance(v2.begin(),it));
1777 if(AreCellsEqualInPool(v2,compType,connPtr,connIPtr,commonCells))
1779 int pos=commonCellsI->back();
1780 commonCellsI->pushBackSilent(commonCells->getNumberOfTuples());
1781 for(const int *it=commonCells->begin()+pos;it!=commonCells->end();it++)
1782 isFetched[*it]=true;
1788 commonCellsArr=commonCells.retn();
1789 commonCellsIArr=commonCellsI.retn();
1793 * Checks if \a this mesh includes all cells of an \a other mesh, and returns an array
1794 * giving for each cell of the \a other an id of a cell in \a this mesh. A value larger
1795 * than \a this->getNumberOfCells() in the returned array means that there is no
1796 * corresponding cell in \a this mesh.
1797 * It is expected that \a this and \a other meshes share the same node coordinates
1798 * array, if it is not so an exception is thrown.
1799 * \param [in] other - the mesh to compare with.
1800 * \param [in] compType - specifies a cell comparison technique. For meaning of its
1801 * valid values [0,1,2], see zipConnectivityTraducer().
1802 * \param [out] arr - a new instance of DataArrayInt returning correspondence
1803 * between cells of the two meshes. It contains \a other->getNumberOfCells()
1804 * values. The caller is to delete this array using
1805 * decrRef() as it is no more needed.
1806 * \return bool - \c true if all cells of \a other mesh are present in the \a this
1809 * \if ENABLE_EXAMPLES
1810 * \ref cpp_mcumesh_areCellsIncludedIn "Here is a C++ example".<br>
1811 * \ref py_mcumesh_areCellsIncludedIn "Here is a Python example".
1813 * \sa checkDeepEquivalOnSameNodesWith()
1814 * \sa checkGeoEquivalWith()
1816 bool MEDCouplingUMesh::areCellsIncludedIn(const MEDCouplingUMesh *other, int compType, DataArrayInt *& arr) const
1818 MCAuto<MEDCouplingUMesh> mesh=MergeUMeshesOnSameCoords(this,other);
1819 int nbOfCells=getNumberOfCells();
1820 static const int possibleCompType[]={0,1,2};
1821 if(std::find(possibleCompType,possibleCompType+sizeof(possibleCompType)/sizeof(int),compType)==possibleCompType+sizeof(possibleCompType)/sizeof(int))
1823 std::ostringstream oss; oss << "MEDCouplingUMesh::areCellsIncludedIn : only following policies are possible : ";
1824 std::copy(possibleCompType,possibleCompType+sizeof(possibleCompType)/sizeof(int),std::ostream_iterator<int>(oss," "));
1826 throw INTERP_KERNEL::Exception(oss.str());
1828 MCAuto<DataArrayInt> o2n=mesh->zipConnectivityTraducer(compType,nbOfCells);
1829 arr=o2n->subArray(nbOfCells);
1830 arr->setName(other->getName());
1832 if(other->getNumberOfCells()==0)
1834 return arr->getMaxValue(tmp)<nbOfCells;
1838 * This method makes the assumption that \a this and \a other share the same coords. If not an exception will be thrown !
1839 * This method tries to determine if \b other is fully included in \b this.
1840 * The main difference is that this method is not expected to throw exception.
1841 * This method has two outputs :
1843 * \param other other mesh
1844 * \param arr is an output parameter that returns a \b newly created instance. This array is of size 'other->getNumberOfCells()'.
1845 * \return If \a other is fully included in 'this 'true is returned. If not false is returned.
1847 bool MEDCouplingUMesh::areCellsIncludedInPolicy7(const MEDCouplingUMesh *other, DataArrayInt *& arr) const
1849 MCAuto<MEDCouplingUMesh> mesh=MergeUMeshesOnSameCoords(this,other);
1850 DataArrayInt *commonCells=0,*commonCellsI=0;
1851 int thisNbCells=getNumberOfCells();
1852 mesh->findCommonCells(7,thisNbCells,commonCells,commonCellsI);
1853 MCAuto<DataArrayInt> commonCellsTmp(commonCells),commonCellsITmp(commonCellsI);
1854 const int *commonCellsPtr=commonCells->getConstPointer(),*commonCellsIPtr=commonCellsI->getConstPointer();
1855 int otherNbCells=other->getNumberOfCells();
1856 MCAuto<DataArrayInt> arr2=DataArrayInt::New();
1857 arr2->alloc(otherNbCells,1);
1858 arr2->fillWithZero();
1859 int *arr2Ptr=arr2->getPointer();
1860 int nbOfCommon=commonCellsI->getNumberOfTuples()-1;
1861 for(int i=0;i<nbOfCommon;i++)
1863 int start=commonCellsPtr[commonCellsIPtr[i]];
1864 if(start<thisNbCells)
1866 for(int j=commonCellsIPtr[i]+1;j!=commonCellsIPtr[i+1];j++)
1868 int sig=commonCellsPtr[j]>0?1:-1;
1869 int val=std::abs(commonCellsPtr[j])-1;
1870 if(val>=thisNbCells)
1871 arr2Ptr[val-thisNbCells]=sig*(start+1);
1875 arr2->setName(other->getName());
1876 if(arr2->presenceOfValue(0))
1882 MEDCouplingUMesh *MEDCouplingUMesh::mergeMyselfWithOnSameCoords(const MEDCouplingPointSet *other) const
1885 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::mergeMyselfWithOnSameCoords : input other is null !");
1886 const MEDCouplingUMesh *otherC=dynamic_cast<const MEDCouplingUMesh *>(other);
1888 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::mergeMyselfWithOnSameCoords : the input other mesh is not of type unstructured !");
1889 std::vector<const MEDCouplingUMesh *> ms(2);
1892 return MergeUMeshesOnSameCoords(ms);
1896 * Build a sub part of \b this lying or not on the same coordinates than \b this (regarding value of \b keepCoords).
1897 * By default coordinates are kept. This method is close to MEDCouplingUMesh::buildPartOfMySelf except that here input
1898 * cellIds is not given explicitely but by a range python like.
1903 * \param keepCoords that specifies if you want or not to keep coords as this or zip it (see MEDCoupling::MEDCouplingUMesh::zipCoords). If true zipCoords is \b NOT called, if false, zipCoords is called.
1904 * \return a newly allocated
1906 * \warning This method modifies can generate an unstructured mesh whose cells are not sorted by geometric type order.
1907 * In view of the MED file writing, a renumbering of cells of returned unstructured mesh (using MEDCouplingUMesh::sortCellsInMEDFileFrmt) should be necessary.
1909 MEDCouplingUMesh *MEDCouplingUMesh::buildPartOfMySelfSlice(int start, int end, int step, bool keepCoords) const
1911 if(getMeshDimension()!=-1)
1912 return static_cast<MEDCouplingUMesh *>(MEDCouplingPointSet::buildPartOfMySelfSlice(start,end,step,keepCoords));
1915 int newNbOfCells=DataArray::GetNumberOfItemGivenBESRelative(start,end,step,"MEDCouplingUMesh::buildPartOfMySelfSlice for -1 dimension mesh ");
1917 throw INTERP_KERNEL::Exception("-1D mesh has only one cell !");
1919 throw INTERP_KERNEL::Exception("-1D mesh has only one cell : 0 !");
1921 return const_cast<MEDCouplingUMesh *>(this);
1926 * Creates a new MEDCouplingUMesh containing specified cells of \a this mesh.
1927 * The result mesh shares or not the node coordinates array with \a this mesh depending
1928 * on \a keepCoords parameter.
1929 * \warning Cells of the result mesh can be \b not sorted by geometric type, hence,
1930 * to write this mesh to the MED file, its cells must be sorted using
1931 * sortCellsInMEDFileFrmt().
1932 * \param [in] begin - an array of cell ids to include to the new mesh.
1933 * \param [in] end - a pointer to last-plus-one-th element of \a begin.
1934 * \param [in] keepCoords - if \c true, the result mesh shares the node coordinates
1935 * array of \a this mesh, else "free" nodes are removed from the result mesh
1936 * by calling zipCoords().
1937 * \return MEDCouplingUMesh * - a new instance of MEDCouplingUMesh. The caller is
1938 * to delete this mesh using decrRef() as it is no more needed.
1939 * \throw If the coordinates array is not set.
1940 * \throw If the nodal connectivity of cells is not defined.
1941 * \throw If any cell id in the array \a begin is not valid.
1943 * \if ENABLE_EXAMPLES
1944 * \ref cpp_mcumesh_buildPartOfMySelf "Here is a C++ example".<br>
1945 * \ref py_mcumesh_buildPartOfMySelf "Here is a Python example".
1948 MEDCouplingUMesh *MEDCouplingUMesh::buildPartOfMySelf(const int *begin, const int *end, bool keepCoords) const
1950 if(getMeshDimension()!=-1)
1951 return static_cast<MEDCouplingUMesh *>(MEDCouplingPointSet::buildPartOfMySelf(begin,end,keepCoords));
1955 throw INTERP_KERNEL::Exception("-1D mesh has only one cell !");
1957 throw INTERP_KERNEL::Exception("-1D mesh has only one cell : 0 !");
1959 return const_cast<MEDCouplingUMesh *>(this);
1964 * This method operates only on nodal connectivity on \b this. Coordinates of \b this is completely ignored here.
1966 * This method allows to partially modify some cells in \b this (whose list is specified by [ \b cellIdsBg, \b cellIdsEnd ) ) with cells coming in \b otherOnSameCoordsThanThis.
1967 * Size of [ \b cellIdsBg, \b cellIdsEnd ) ) must be equal to the number of cells of otherOnSameCoordsThanThis.
1968 * The number of cells of \b this will remain the same with this method.
1970 * \param [in] cellIdsBg begin of cell ids (included) of cells in this to assign
1971 * \param [in] cellIdsEnd end of cell ids (excluded) of cells in this to assign
1972 * \param [in] otherOnSameCoordsThanThis an another mesh with same meshdimension than \b this with exactly the same number of cells than cell ids list in [\b cellIdsBg, \b cellIdsEnd ).
1973 * Coordinate pointer of \b this and those of \b otherOnSameCoordsThanThis must be the same
1975 void MEDCouplingUMesh::setPartOfMySelf(const int *cellIdsBg, const int *cellIdsEnd, const MEDCouplingUMesh& otherOnSameCoordsThanThis)
1977 checkConnectivityFullyDefined();
1978 otherOnSameCoordsThanThis.checkConnectivityFullyDefined();
1979 if(getCoords()!=otherOnSameCoordsThanThis.getCoords())
1980 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::setPartOfMySelf : coordinates pointer are not the same ! Invoke setCoords or call tryToShareSameCoords method !");
1981 if(getMeshDimension()!=otherOnSameCoordsThanThis.getMeshDimension())
1983 std::ostringstream oss; oss << "MEDCouplingUMesh::setPartOfMySelf : Mismatch of meshdimensions ! this is equal to " << getMeshDimension();
1984 oss << ", whereas other mesh dimension is set equal to " << otherOnSameCoordsThanThis.getMeshDimension() << " !";
1985 throw INTERP_KERNEL::Exception(oss.str());
1987 std::size_t nbOfCellsToModify(std::distance(cellIdsBg,cellIdsEnd));
1988 if(nbOfCellsToModify!=otherOnSameCoordsThanThis.getNumberOfCells())
1990 std::ostringstream oss; oss << "MEDCouplingUMesh::setPartOfMySelf : cells ids length (" << nbOfCellsToModify << ") do not match the number of cells of other mesh (" << otherOnSameCoordsThanThis.getNumberOfCells() << ") !";
1991 throw INTERP_KERNEL::Exception(oss.str());
1993 std::size_t nbOfCells(getNumberOfCells());
1994 bool easyAssign(true);
1995 const int *connI(_nodal_connec_index->begin());
1996 const int *connIOther=otherOnSameCoordsThanThis._nodal_connec_index->begin();
1997 for(const int *it=cellIdsBg;it!=cellIdsEnd && easyAssign;it++,connIOther++)
1999 if(*it>=0 && *it<(int)nbOfCells)
2001 easyAssign=(connIOther[1]-connIOther[0])==(connI[*it+1]-connI[*it]);
2005 std::ostringstream oss; oss << "MEDCouplingUMesh::setPartOfMySelf : On pos #" << std::distance(cellIdsBg,it) << " id is equal to " << *it << " which is not in [0," << nbOfCells << ") !";
2006 throw INTERP_KERNEL::Exception(oss.str());
2011 MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx(cellIdsBg,cellIdsEnd,_nodal_connec,_nodal_connec_index,otherOnSameCoordsThanThis._nodal_connec,otherOnSameCoordsThanThis._nodal_connec_index);
2016 DataArrayInt *arrOut=0,*arrIOut=0;
2017 MEDCouplingUMesh::SetPartOfIndexedArrays(cellIdsBg,cellIdsEnd,_nodal_connec,_nodal_connec_index,otherOnSameCoordsThanThis._nodal_connec,otherOnSameCoordsThanThis._nodal_connec_index,
2019 MCAuto<DataArrayInt> arrOutAuto(arrOut),arrIOutAuto(arrIOut);
2020 setConnectivity(arrOut,arrIOut,true);
2024 void MEDCouplingUMesh::setPartOfMySelfSlice(int start, int end, int step, const MEDCouplingUMesh& otherOnSameCoordsThanThis)
2026 checkConnectivityFullyDefined();
2027 otherOnSameCoordsThanThis.checkConnectivityFullyDefined();
2028 if(getCoords()!=otherOnSameCoordsThanThis.getCoords())
2029 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::setPartOfMySelfSlice : coordinates pointer are not the same ! Invoke setCoords or call tryToShareSameCoords method !");
2030 if(getMeshDimension()!=otherOnSameCoordsThanThis.getMeshDimension())
2032 std::ostringstream oss; oss << "MEDCouplingUMesh::setPartOfMySelfSlice : Mismatch of meshdimensions ! this is equal to " << getMeshDimension();
2033 oss << ", whereas other mesh dimension is set equal to " << otherOnSameCoordsThanThis.getMeshDimension() << " !";
2034 throw INTERP_KERNEL::Exception(oss.str());
2036 int nbOfCellsToModify=DataArray::GetNumberOfItemGivenBESRelative(start,end,step,"MEDCouplingUMesh::setPartOfMySelfSlice : ");
2037 if(nbOfCellsToModify!=(int)otherOnSameCoordsThanThis.getNumberOfCells())
2039 std::ostringstream oss; oss << "MEDCouplingUMesh::setPartOfMySelfSlice : cells ids length (" << nbOfCellsToModify << ") do not match the number of cells of other mesh (" << otherOnSameCoordsThanThis.getNumberOfCells() << ") !";
2040 throw INTERP_KERNEL::Exception(oss.str());
2042 int nbOfCells=getNumberOfCells();
2043 bool easyAssign=true;
2044 const int *connI=_nodal_connec_index->getConstPointer();
2045 const int *connIOther=otherOnSameCoordsThanThis._nodal_connec_index->getConstPointer();
2047 for(int i=0;i<nbOfCellsToModify && easyAssign;i++,it+=step,connIOther++)
2049 if(it>=0 && it<nbOfCells)
2051 easyAssign=(connIOther[1]-connIOther[0])==(connI[it+1]-connI[it]);
2055 std::ostringstream oss; oss << "MEDCouplingUMesh::setPartOfMySelfSlice : On pos #" << i << " id is equal to " << it << " which is not in [0," << nbOfCells << ") !";
2056 throw INTERP_KERNEL::Exception(oss.str());
2061 MEDCouplingUMesh::SetPartOfIndexedArraysSameIdxSlice(start,end,step,_nodal_connec,_nodal_connec_index,otherOnSameCoordsThanThis._nodal_connec,otherOnSameCoordsThanThis._nodal_connec_index);
2066 DataArrayInt *arrOut=0,*arrIOut=0;
2067 MEDCouplingUMesh::SetPartOfIndexedArraysSlice(start,end,step,_nodal_connec,_nodal_connec_index,otherOnSameCoordsThanThis._nodal_connec,otherOnSameCoordsThanThis._nodal_connec_index,
2069 MCAuto<DataArrayInt> arrOutAuto(arrOut),arrIOutAuto(arrIOut);
2070 setConnectivity(arrOut,arrIOut,true);
2076 * Creates a new MEDCouplingUMesh containing cells, of dimension one less than \a
2077 * this->getMeshDimension(), that bound some cells of \a this mesh.
2078 * The cells of lower dimension to include to the result mesh are selected basing on
2079 * specified node ids and the value of \a fullyIn parameter. If \a fullyIn ==\c true, a
2080 * cell is copied if its all nodes are in the array \a begin of node ids. If \a fullyIn
2081 * ==\c false, a cell is copied if any its node is in the array of node ids. The
2082 * created mesh shares the node coordinates array with \a this mesh.
2083 * \param [in] begin - the array of node ids.
2084 * \param [in] end - a pointer to the (last+1)-th element of \a begin.
2085 * \param [in] fullyIn - if \c true, then cells whose all nodes are in the
2086 * array \a begin are added, else cells whose any node is in the
2087 * array \a begin are added.
2088 * \return MEDCouplingUMesh * - new instance of MEDCouplingUMesh. The caller is
2089 * to delete this mesh using decrRef() as it is no more needed.
2090 * \throw If the coordinates array is not set.
2091 * \throw If the nodal connectivity of cells is not defined.
2092 * \throw If any node id in \a begin is not valid.
2094 * \if ENABLE_EXAMPLES
2095 * \ref cpp_mcumesh_buildFacePartOfMySelfNode "Here is a C++ example".<br>
2096 * \ref py_mcumesh_buildFacePartOfMySelfNode "Here is a Python example".
2099 MEDCouplingUMesh *MEDCouplingUMesh::buildFacePartOfMySelfNode(const int *begin, const int *end, bool fullyIn) const
2101 MCAuto<DataArrayInt> desc,descIndx,revDesc,revDescIndx;
2102 desc=DataArrayInt::New(); descIndx=DataArrayInt::New(); revDesc=DataArrayInt::New(); revDescIndx=DataArrayInt::New();
2103 MCAuto<MEDCouplingUMesh> subMesh=buildDescendingConnectivity(desc,descIndx,revDesc,revDescIndx);
2104 desc=0; descIndx=0; revDesc=0; revDescIndx=0;
2105 return static_cast<MEDCouplingUMesh*>(subMesh->buildPartOfMySelfNode(begin,end,fullyIn));
2109 * Creates a new MEDCouplingUMesh containing cells, of dimension one less than \a
2110 * this->getMeshDimension(), which bound only one cell of \a this mesh.
2111 * \param [in] keepCoords - if \c true, the result mesh shares the node coordinates
2112 * array of \a this mesh, else "free" nodes are removed from the result mesh
2113 * by calling zipCoords().
2114 * \return MEDCouplingUMesh * - a new instance of MEDCouplingUMesh. The caller is
2115 * to delete this mesh using decrRef() as it is no more needed.
2116 * \throw If the coordinates array is not set.
2117 * \throw If the nodal connectivity of cells is not defined.
2119 * \if ENABLE_EXAMPLES
2120 * \ref cpp_mcumesh_buildBoundaryMesh "Here is a C++ example".<br>
2121 * \ref py_mcumesh_buildBoundaryMesh "Here is a Python example".
2124 MEDCouplingUMesh *MEDCouplingUMesh::buildBoundaryMesh(bool keepCoords) const
2126 DataArrayInt *desc=DataArrayInt::New();
2127 DataArrayInt *descIndx=DataArrayInt::New();
2128 DataArrayInt *revDesc=DataArrayInt::New();
2129 DataArrayInt *revDescIndx=DataArrayInt::New();
2131 MCAuto<MEDCouplingUMesh> meshDM1=buildDescendingConnectivity(desc,descIndx,revDesc,revDescIndx);
2134 descIndx->decrRef();
2135 int nbOfCells=meshDM1->getNumberOfCells();
2136 const int *revDescIndxC=revDescIndx->getConstPointer();
2137 std::vector<int> boundaryCells;
2138 for(int i=0;i<nbOfCells;i++)
2139 if(revDescIndxC[i+1]-revDescIndxC[i]==1)
2140 boundaryCells.push_back(i);
2141 revDescIndx->decrRef();
2142 MEDCouplingUMesh *ret=meshDM1->buildPartOfMySelf(&boundaryCells[0],&boundaryCells[0]+boundaryCells.size(),keepCoords);
2147 * This method returns a newly created DataArrayInt instance containing ids of cells located in boundary.
2148 * A cell is detected to be on boundary if it contains one or more than one face having only one father.
2149 * This method makes the assumption that \a this is fully defined (coords,connectivity). If not an exception will be thrown.
2151 DataArrayInt *MEDCouplingUMesh::findCellIdsOnBoundary() const
2153 checkFullyDefined();
2154 MCAuto<DataArrayInt> desc=DataArrayInt::New();
2155 MCAuto<DataArrayInt> descIndx=DataArrayInt::New();
2156 MCAuto<DataArrayInt> revDesc=DataArrayInt::New();
2157 MCAuto<DataArrayInt> revDescIndx=DataArrayInt::New();
2159 buildDescendingConnectivity(desc,descIndx,revDesc,revDescIndx)->decrRef();
2160 desc=(DataArrayInt*)0; descIndx=(DataArrayInt*)0;
2162 MCAuto<DataArrayInt> tmp=revDescIndx->deltaShiftIndex();
2163 MCAuto<DataArrayInt> faceIds=tmp->findIdsEqual(1); tmp=(DataArrayInt*)0;
2164 const int *revDescPtr=revDesc->getConstPointer();
2165 const int *revDescIndxPtr=revDescIndx->getConstPointer();
2166 int nbOfCells=getNumberOfCells();
2167 std::vector<bool> ret1(nbOfCells,false);
2169 for(const int *pt=faceIds->begin();pt!=faceIds->end();pt++)
2170 if(!ret1[revDescPtr[revDescIndxPtr[*pt]]])
2171 { ret1[revDescPtr[revDescIndxPtr[*pt]]]=true; sz++; }
2173 DataArrayInt *ret2=DataArrayInt::New();
2175 int *ret2Ptr=ret2->getPointer();
2177 for(std::vector<bool>::const_iterator it=ret1.begin();it!=ret1.end();it++,sz++)
2180 ret2->setName("BoundaryCells");
2185 * This method finds in \b this the cell ids that lie on mesh \b otherDimM1OnSameCoords.
2186 * \b this and \b otherDimM1OnSameCoords have to lie on the same coordinate array pointer. The coherency of that coords array with connectivity
2187 * of \b this and \b otherDimM1OnSameCoords is not important here because this method works only on connectivity.
2188 * this->getMeshDimension() - 1 must be equal to otherDimM1OnSameCoords.getMeshDimension()
2190 * s0 is the cell ids set in \b this lying on at least one node in the fetched nodes in \b otherDimM1OnSameCoords.
2191 * This method also returns the cells ids set s1 which contains the cell ids in \b this for which one of the dim-1 constituent
2192 * equals a cell in \b otherDimM1OnSameCoords.
2194 * \throw if \b otherDimM1OnSameCoords is not part of constituent of \b this, or if coordinate pointer of \b this and \b otherDimM1OnSameCoords
2195 * are not same, or if this->getMeshDimension()-1!=otherDimM1OnSameCoords.getMeshDimension()
2197 * \param [in] otherDimM1OnSameCoords
2198 * \param [out] cellIdsRk0 a newly allocated array containing the cell ids of s0 (which are cell ids of \b this) in the above algorithm.
2199 * \param [out] cellIdsRk1 a newly allocated array containing the cell ids of s1 \b indexed into the \b cellIdsRk0 subset. To get the absolute ids of s1, simply invoke
2200 * cellIdsRk1->transformWithIndArr(cellIdsRk0->begin(),cellIdsRk0->end());
2202 void MEDCouplingUMesh::findCellIdsLyingOn(const MEDCouplingUMesh& otherDimM1OnSameCoords, DataArrayInt *&cellIdsRk0, DataArrayInt *&cellIdsRk1) const
2204 if(getCoords()!=otherDimM1OnSameCoords.getCoords())
2205 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::findCellIdsLyingOn : coordinates pointer are not the same ! Use tryToShareSameCoords method !");
2206 checkConnectivityFullyDefined();
2207 otherDimM1OnSameCoords.checkConnectivityFullyDefined();
2208 if(getMeshDimension()-1!=otherDimM1OnSameCoords.getMeshDimension())
2209 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::findCellIdsLyingOn : invalid mesh dimension of input mesh regarding meshdimesion of this !");
2210 MCAuto<DataArrayInt> fetchedNodeIds1=otherDimM1OnSameCoords.computeFetchedNodeIds();
2211 MCAuto<DataArrayInt> s0arr=getCellIdsLyingOnNodes(fetchedNodeIds1->begin(),fetchedNodeIds1->end(),false);
2212 MCAuto<MEDCouplingUMesh> thisPart=static_cast<MEDCouplingUMesh *>(buildPartOfMySelf(s0arr->begin(),s0arr->end(),true));
2213 MCAuto<DataArrayInt> descThisPart=DataArrayInt::New(),descIThisPart=DataArrayInt::New(),revDescThisPart=DataArrayInt::New(),revDescIThisPart=DataArrayInt::New();
2214 MCAuto<MEDCouplingUMesh> thisPartConsti=thisPart->buildDescendingConnectivity(descThisPart,descIThisPart,revDescThisPart,revDescIThisPart);
2215 const int *revDescThisPartPtr=revDescThisPart->getConstPointer(),*revDescIThisPartPtr=revDescIThisPart->getConstPointer();
2216 DataArrayInt *idsOtherInConsti=0;
2217 bool b=thisPartConsti->areCellsIncludedIn(&otherDimM1OnSameCoords,2,idsOtherInConsti);
2218 MCAuto<DataArrayInt> idsOtherInConstiAuto(idsOtherInConsti);
2220 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::findCellIdsLyingOn : the given mdim-1 mesh in other is not a constituent of this !");
2222 for(const int *idOther=idsOtherInConsti->begin();idOther!=idsOtherInConsti->end();idOther++)
2223 s1.insert(revDescThisPartPtr+revDescIThisPartPtr[*idOther],revDescThisPartPtr+revDescIThisPartPtr[*idOther+1]);
2224 MCAuto<DataArrayInt> s1arr_renum1=DataArrayInt::New(); s1arr_renum1->alloc((int)s1.size(),1); std::copy(s1.begin(),s1.end(),s1arr_renum1->getPointer());
2225 s1arr_renum1->sort();
2226 cellIdsRk0=s0arr.retn();
2227 //cellIdsRk1=s_renum1.retn();
2228 cellIdsRk1=s1arr_renum1.retn();
2232 * This method computes the skin of \b this. That is to say the consituting meshdim-1 mesh is built and only the boundary subpart is
2233 * returned. This subpart of meshdim-1 mesh is built using meshdim-1 cells in it shared only one cell in \b this.
2235 * \return a newly allocated mesh lying on the same coordinates than \b this. The caller has to deal with returned mesh.
2237 MEDCouplingUMesh *MEDCouplingUMesh::computeSkin() const
2239 MCAuto<DataArrayInt> desc=DataArrayInt::New();
2240 MCAuto<DataArrayInt> descIndx=DataArrayInt::New();
2241 MCAuto<DataArrayInt> revDesc=DataArrayInt::New();
2242 MCAuto<DataArrayInt> revDescIndx=DataArrayInt::New();
2244 MCAuto<MEDCouplingUMesh> meshDM1=buildDescendingConnectivity(desc,descIndx,revDesc,revDescIndx);
2245 revDesc=0; desc=0; descIndx=0;
2246 MCAuto<DataArrayInt> revDescIndx2=revDescIndx->deltaShiftIndex();
2247 MCAuto<DataArrayInt> part=revDescIndx2->findIdsEqual(1);
2248 return static_cast<MEDCouplingUMesh *>(meshDM1->buildPartOfMySelf(part->begin(),part->end(),true));
2252 * Finds nodes lying on the boundary of \a this mesh.
2253 * \return DataArrayInt * - a new instance of DataArrayInt holding ids of found
2254 * nodes. The caller is to delete this array using decrRef() as it is no
2256 * \throw If the coordinates array is not set.
2257 * \throw If the nodal connectivity of cells is node defined.
2259 * \if ENABLE_EXAMPLES
2260 * \ref cpp_mcumesh_findBoundaryNodes "Here is a C++ example".<br>
2261 * \ref py_mcumesh_findBoundaryNodes "Here is a Python example".
2264 DataArrayInt *MEDCouplingUMesh::findBoundaryNodes() const
2266 MCAuto<MEDCouplingUMesh> skin=computeSkin();
2267 return skin->computeFetchedNodeIds();
2270 MEDCouplingUMesh *MEDCouplingUMesh::buildUnstructured() const
2273 return const_cast<MEDCouplingUMesh *>(this);
2277 * This method expects that \b this and \b otherDimM1OnSameCoords share the same coordinates array.
2278 * otherDimM1OnSameCoords->getMeshDimension() is expected to be equal to this->getMeshDimension()-1.
2279 * This method searches for nodes needed to be duplicated. These nodes are nodes fetched by \b otherDimM1OnSameCoords which are not part of the boundary of \b otherDimM1OnSameCoords.
2280 * If a node is in the boundary of \b this \b and in the boundary of \b otherDimM1OnSameCoords this node is considerd as needed to be duplicated.
2281 * When the set of node ids \b nodeIdsToDuplicate is computed, cell ids in \b this is searched so that their connectivity includes at least 1 node in \b nodeIdsToDuplicate.
2283 * \param [in] otherDimM1OnSameCoords a mesh lying on the same coords than \b this and with a mesh dimension equal to those of \b this minus 1. WARNING this input
2284 * parameter is altered during the call.
2285 * \param [out] nodeIdsToDuplicate node ids needed to be duplicated following the algorithm explain above.
2286 * \param [out] cellIdsNeededToBeRenum cell ids in \b this in which the renumber of nodes should be performed.
2287 * \param [out] cellIdsNotModified cell ids int \b this that lies on \b otherDimM1OnSameCoords mesh whose connectivity do \b not need to be modified as it is the case for \b cellIdsNeededToBeRenum.
2289 * \warning This method modifies param \b otherDimM1OnSameCoords (for speed reasons).
2291 void MEDCouplingUMesh::findNodesToDuplicate(const MEDCouplingUMesh& otherDimM1OnSameCoords, DataArrayInt *& nodeIdsToDuplicate,
2292 DataArrayInt *& cellIdsNeededToBeRenum, DataArrayInt *& cellIdsNotModified) const
2294 typedef MCAuto<DataArrayInt> DAInt;
2295 typedef MCAuto<MEDCouplingUMesh> MCUMesh;
2297 checkFullyDefined();
2298 otherDimM1OnSameCoords.checkFullyDefined();
2299 if(getCoords()!=otherDimM1OnSameCoords.getCoords())
2300 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::findNodesToDuplicate : meshes do not share the same coords array !");
2301 if(otherDimM1OnSameCoords.getMeshDimension()!=getMeshDimension()-1)
2302 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::findNodesToDuplicate : the mesh given in other parameter must have this->getMeshDimension()-1 !");
2304 // Checking star-shaped M1 group:
2305 DAInt dt0=DataArrayInt::New(),dit0=DataArrayInt::New(),rdt0=DataArrayInt::New(),rdit0=DataArrayInt::New();
2306 MCUMesh meshM2 = otherDimM1OnSameCoords.buildDescendingConnectivity(dt0, dit0, rdt0, rdit0);
2307 DAInt dsi = rdit0->deltaShiftIndex();
2308 DAInt idsTmp0 = dsi->findIdsNotInRange(-1, 3);
2309 if(idsTmp0->getNumberOfTuples())
2310 throw INTERP_KERNEL::Exception("MEDFileUMesh::buildInnerBoundaryAlongM1Group: group is too complex: some points (or edges) have more than two connected segments (or faces)!");
2311 dt0=0; dit0=0; rdt0=0; rdit0=0; idsTmp0=0;
2313 // Get extreme nodes from the group (they won't be duplicated), ie nodes belonging to boundary cells of M1
2314 DAInt xtremIdsM2 = dsi->findIdsEqual(1); dsi = 0;
2315 MCUMesh meshM2Part = static_cast<MEDCouplingUMesh *>(meshM2->buildPartOfMySelf(xtremIdsM2->begin(), xtremIdsM2->end(),true));
2316 DAInt xtrem = meshM2Part->computeFetchedNodeIds();
2317 // Remove from the list points on the boundary of the M0 mesh (those need duplication!)
2318 dt0=DataArrayInt::New(),dit0=DataArrayInt::New(),rdt0=DataArrayInt::New(),rdit0=DataArrayInt::New();
2319 MCUMesh m0desc = buildDescendingConnectivity(dt0, dit0, rdt0, rdit0); dt0=0; dit0=0; rdt0=0;
2320 dsi = rdit0->deltaShiftIndex();
2321 DAInt boundSegs = dsi->findIdsEqual(1); // boundary segs/faces of the M0 mesh
2322 MCUMesh m0descSkin = static_cast<MEDCouplingUMesh *>(m0desc->buildPartOfMySelf(boundSegs->begin(),boundSegs->end(), true));
2323 DAInt fNodes = m0descSkin->computeFetchedNodeIds();
2324 // In 3D, some points on the boundary of M0 still need duplication:
2326 if (getMeshDimension() == 3)
2328 DAInt dnu1=DataArrayInt::New(), dnu2=DataArrayInt::New(), dnu3=DataArrayInt::New(), dnu4=DataArrayInt::New();
2329 MCUMesh m0descSkinDesc = m0descSkin->buildDescendingConnectivity(dnu1, dnu2, dnu3, dnu4);
2330 dnu1=0;dnu2=0;dnu3=0;dnu4=0;
2331 DataArrayInt * corresp=0;
2332 meshM2->areCellsIncludedIn(m0descSkinDesc,2,corresp);
2333 DAInt validIds = corresp->findIdsInRange(0, meshM2->getNumberOfCells());
2335 if (validIds->getNumberOfTuples())
2337 MCUMesh m1IntersecSkin = static_cast<MEDCouplingUMesh *>(m0descSkinDesc->buildPartOfMySelf(validIds->begin(), validIds->end(), true));
2338 DAInt notDuplSkin = m1IntersecSkin->findBoundaryNodes();
2339 DAInt fNodes1 = fNodes->buildSubstraction(notDuplSkin);
2340 notDup = xtrem->buildSubstraction(fNodes1);
2343 notDup = xtrem->buildSubstraction(fNodes);
2346 notDup = xtrem->buildSubstraction(fNodes);
2348 // Now compute cells around group (i.e. cells where we will do the propagation to identify the two sub-sets delimited by the group)
2349 DAInt m1Nodes = otherDimM1OnSameCoords.computeFetchedNodeIds();
2350 DAInt dupl = m1Nodes->buildSubstraction(notDup);
2351 DAInt cellsAroundGroup = getCellIdsLyingOnNodes(dupl->begin(), dupl->end(), false); // false= take cell in, even if not all nodes are in notDup
2354 MCUMesh m0Part2=static_cast<MEDCouplingUMesh *>(buildPartOfMySelf(cellsAroundGroup->begin(),cellsAroundGroup->end(),true));
2355 int nCells2 = m0Part2->getNumberOfCells();
2356 DAInt desc00=DataArrayInt::New(),descI00=DataArrayInt::New(),revDesc00=DataArrayInt::New(),revDescI00=DataArrayInt::New();
2357 MCUMesh m01=m0Part2->buildDescendingConnectivity(desc00,descI00,revDesc00,revDescI00);
2359 // Neighbor information of the mesh without considering the crack (serves to count how many connex pieces it is made of)
2360 DataArrayInt *tmp00=0,*tmp11=0;
2361 MEDCouplingUMesh::ComputeNeighborsOfCellsAdv(desc00,descI00,revDesc00,revDescI00, tmp00, tmp11);
2362 DAInt neighInit00(tmp00);
2363 DAInt neighIInit00(tmp11);
2364 // Neighbor information of the mesh WITH the crack (some neighbors are removed):
2365 DataArrayInt *idsTmp=0;
2366 m01->areCellsIncludedIn(&otherDimM1OnSameCoords,2,idsTmp);
2368 // In the neighbor information remove the connection between high dimension cells and its low level constituents which are part
2369 // of the frontier given in parameter (i.e. the cells of low dimension from the group delimiting the crack):
2370 MEDCouplingUMesh::RemoveIdsFromIndexedArrays(ids->begin(),ids->end(),desc00,descI00);
2371 DataArrayInt *tmp0=0,*tmp1=0;
2372 // Compute the neighbor of each cell in m0Part2, taking into account the broken link above. Two
2373 // cells on either side of the crack (defined by the mesh of low dimension) are not neighbor anymore.
2374 ComputeNeighborsOfCellsAdv(desc00,descI00,revDesc00,revDescI00,tmp0,tmp1);
2375 DAInt neigh00(tmp0);
2376 DAInt neighI00(tmp1);
2378 // For each initial connex part of the sub-mesh (or said differently for each independent crack):
2379 int seed = 0, nIter = 0;
2380 int nIterMax = nCells2+1; // Safety net for the loop
2381 DAInt hitCells = DataArrayInt::New(); hitCells->alloc(nCells2);
2382 hitCells->fillWithValue(-1);
2383 DAInt cellsToModifyConn0_torenum = DataArrayInt::New();
2384 cellsToModifyConn0_torenum->alloc(0,1);
2385 while (nIter < nIterMax)
2387 DAInt t = hitCells->findIdsEqual(-1);
2388 if (!t->getNumberOfTuples())
2390 // Connex zone without the crack (to compute the next seed really)
2392 DAInt connexCheck = MEDCouplingUMesh::ComputeSpreadZoneGraduallyFromSeed(&seed, &seed+1, neighInit00,neighIInit00, -1, dnu);
2394 for (int * ptr = connexCheck->getPointer(); cnt < connexCheck->getNumberOfTuples(); ptr++, cnt++)
2395 hitCells->setIJ(*ptr,0,1);
2396 // Connex zone WITH the crack (to identify cells lying on either part of the crack)
2397 DAInt spreadZone = MEDCouplingUMesh::ComputeSpreadZoneGraduallyFromSeed(&seed, &seed+1, neigh00,neighI00, -1, dnu);
2398 cellsToModifyConn0_torenum = DataArrayInt::Aggregate(cellsToModifyConn0_torenum, spreadZone, 0);
2399 // Compute next seed, i.e. a cell in another connex part, which was not covered by the previous iterations
2400 DAInt comple = cellsToModifyConn0_torenum->buildComplement(nCells2);
2401 DAInt nonHitCells = hitCells->findIdsEqual(-1);
2402 DAInt intersec = nonHitCells->buildIntersection(comple);
2403 if (intersec->getNumberOfTuples())
2404 { seed = intersec->getIJ(0,0); }
2409 if (nIter >= nIterMax)
2410 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::findNodesToDuplicate(): internal error - too many iterations.");
2412 DAInt cellsToModifyConn1_torenum=cellsToModifyConn0_torenum->buildComplement(neighI00->getNumberOfTuples()-1);
2413 cellsToModifyConn0_torenum->transformWithIndArr(cellsAroundGroup->begin(),cellsAroundGroup->end());
2414 cellsToModifyConn1_torenum->transformWithIndArr(cellsAroundGroup->begin(),cellsAroundGroup->end());
2416 cellIdsNeededToBeRenum=cellsToModifyConn0_torenum.retn();
2417 cellIdsNotModified=cellsToModifyConn1_torenum.retn();
2418 nodeIdsToDuplicate=dupl.retn();
2422 * This method operates a modification of the connectivity and coords in \b this.
2423 * Every time that a node id in [ \b nodeIdsToDuplicateBg, \b nodeIdsToDuplicateEnd ) will append in nodal connectivity of \b this
2424 * its ids will be modified to id this->getNumberOfNodes()+std::distance(nodeIdsToDuplicateBg,std::find(nodeIdsToDuplicateBg,nodeIdsToDuplicateEnd,id)).
2425 * More explicitely the renumber array in nodes is not explicitely given in old2new to avoid to build a big array of renumbering whereas typically few node ids needs to be
2426 * renumbered. The node id nodeIdsToDuplicateBg[0] will have id this->getNumberOfNodes()+0, node id nodeIdsToDuplicateBg[1] will have id this->getNumberOfNodes()+1,
2427 * node id nodeIdsToDuplicateBg[2] will have id this->getNumberOfNodes()+2...
2429 * As a consequence nodal connectivity array length will remain unchanged by this method, and nodal connectivity index array will remain unchanged by this method.
2431 * \param [in] nodeIdsToDuplicateBg begin of node ids (included) to be duplicated in connectivity only
2432 * \param [in] nodeIdsToDuplicateEnd end of node ids (excluded) to be duplicated in connectivity only
2434 void MEDCouplingUMesh::duplicateNodes(const int *nodeIdsToDuplicateBg, const int *nodeIdsToDuplicateEnd)
2436 int nbOfNodes=getNumberOfNodes();
2437 duplicateNodesInCoords(nodeIdsToDuplicateBg,nodeIdsToDuplicateEnd);
2438 duplicateNodesInConn(nodeIdsToDuplicateBg,nodeIdsToDuplicateEnd,nbOfNodes);
2442 * This method renumbers only nodal connectivity in \a this. The renumbering is only an offset applied. So this method is a specialization of
2443 * \a renumberNodesInConn. \b WARNING, this method does not check that the resulting node ids in the nodal connectivity is in a valid range !
2445 * \param [in] offset - specifies the offset to be applied on each element of connectivity.
2447 * \sa renumberNodesInConn
2449 void MEDCouplingUMesh::renumberNodesWithOffsetInConn(int offset)
2451 checkConnectivityFullyDefined();
2452 int *conn(getNodalConnectivity()->getPointer());
2453 const int *connIndex(getNodalConnectivityIndex()->getConstPointer());
2454 int nbOfCells(getNumberOfCells());
2455 for(int i=0;i<nbOfCells;i++)
2456 for(int iconn=connIndex[i]+1;iconn!=connIndex[i+1];iconn++)
2458 int& node=conn[iconn];
2459 if(node>=0)//avoid polyhedron separator
2464 _nodal_connec->declareAsNew();
2469 * Same than renumberNodesInConn(const int *) except that here the format of old-to-new traducer is using map instead
2470 * of array. This method is dedicated for renumbering from a big set of nodes the a tiny set of nodes which is the case during extraction
2473 void MEDCouplingUMesh::renumberNodesInConn(const INTERP_KERNEL::HashMap<int,int>& newNodeNumbersO2N)
2475 checkConnectivityFullyDefined();
2476 int *conn(getNodalConnectivity()->getPointer());
2477 const int *connIndex(getNodalConnectivityIndex()->getConstPointer());
2478 int nbOfCells(getNumberOfCells());
2479 for(int i=0;i<nbOfCells;i++)
2480 for(int iconn=connIndex[i]+1;iconn!=connIndex[i+1];iconn++)
2482 int& node=conn[iconn];
2483 if(node>=0)//avoid polyhedron separator
2485 INTERP_KERNEL::HashMap<int,int>::const_iterator it(newNodeNumbersO2N.find(node));
2486 if(it!=newNodeNumbersO2N.end())
2492 std::ostringstream oss; oss << "MEDCouplingUMesh::renumberNodesInConn(map) : presence in connectivity for cell #" << i << " of node #" << node << " : Not in map !";
2493 throw INTERP_KERNEL::Exception(oss.str());
2497 _nodal_connec->declareAsNew();
2502 * Changes ids of nodes within the nodal connectivity arrays according to a permutation
2503 * array in "Old to New" mode. The node coordinates array is \b not changed by this method.
2504 * This method is a generalization of shiftNodeNumbersInConn().
2505 * \warning This method performs no check of validity of new ids. **Use it with care !**
2506 * \param [in] newNodeNumbersO2N - a permutation array, of length \a
2507 * this->getNumberOfNodes(), in "Old to New" mode.
2508 * See \ref numbering for more info on renumbering modes.
2509 * \throw If the nodal connectivity of cells is not defined.
2511 * \if ENABLE_EXAMPLES
2512 * \ref cpp_mcumesh_renumberNodesInConn "Here is a C++ example".<br>
2513 * \ref py_mcumesh_renumberNodesInConn "Here is a Python example".
2516 void MEDCouplingUMesh::renumberNodesInConn(const int *newNodeNumbersO2N)
2518 checkConnectivityFullyDefined();
2519 int *conn=getNodalConnectivity()->getPointer();
2520 const int *connIndex=getNodalConnectivityIndex()->getConstPointer();
2521 int nbOfCells(getNumberOfCells());
2522 for(int i=0;i<nbOfCells;i++)
2523 for(int iconn=connIndex[i]+1;iconn!=connIndex[i+1];iconn++)
2525 int& node=conn[iconn];
2526 if(node>=0)//avoid polyhedron separator
2528 node=newNodeNumbersO2N[node];
2531 _nodal_connec->declareAsNew();
2536 * This method renumbers nodes \b in \b connectivity \b only \b without \b any \b reference \b to \b coords.
2537 * This method performs no check on the fact that new coordinate ids are valid. \b Use \b it \b with \b care !
2538 * This method is an specialization of \ref MEDCoupling::MEDCouplingUMesh::renumberNodesInConn "renumberNodesInConn method".
2540 * \param [in] delta specifies the shift size applied to nodeId in nodal connectivity in \b this.
2542 void MEDCouplingUMesh::shiftNodeNumbersInConn(int delta)
2544 checkConnectivityFullyDefined();
2545 int *conn=getNodalConnectivity()->getPointer();
2546 const int *connIndex=getNodalConnectivityIndex()->getConstPointer();
2547 int nbOfCells=getNumberOfCells();
2548 for(int i=0;i<nbOfCells;i++)
2549 for(int iconn=connIndex[i]+1;iconn!=connIndex[i+1];iconn++)
2551 int& node=conn[iconn];
2552 if(node>=0)//avoid polyhedron separator
2557 _nodal_connec->declareAsNew();
2562 * This method operates a modification of the connectivity in \b this.
2563 * Coordinates are \b NOT considered here and will remain unchanged by this method. this->_coords can ever been null for the needs of this method.
2564 * Every time that a node id in [ \b nodeIdsToDuplicateBg, \b nodeIdsToDuplicateEnd ) will append in nodal connectivity of \b this
2565 * its ids will be modified to id offset+std::distance(nodeIdsToDuplicateBg,std::find(nodeIdsToDuplicateBg,nodeIdsToDuplicateEnd,id)).
2566 * More explicitely the renumber array in nodes is not explicitely given in old2new to avoid to build a big array of renumbering whereas typically few node ids needs to be
2567 * renumbered. The node id nodeIdsToDuplicateBg[0] will have id offset+0, node id nodeIdsToDuplicateBg[1] will have id offset+1,
2568 * node id nodeIdsToDuplicateBg[2] will have id offset+2...
2570 * As a consequence nodal connectivity array length will remain unchanged by this method, and nodal connectivity index array will remain unchanged by this method.
2571 * As an another consequense after the call of this method \b this can be transiently non cohrent.
2573 * \param [in] nodeIdsToDuplicateBg begin of node ids (included) to be duplicated in connectivity only
2574 * \param [in] nodeIdsToDuplicateEnd end of node ids (excluded) to be duplicated in connectivity only
2575 * \param [in] offset the offset applied to all node ids in connectivity that are in [ \a nodeIdsToDuplicateBg, \a nodeIdsToDuplicateEnd ).
2577 void MEDCouplingUMesh::duplicateNodesInConn(const int *nodeIdsToDuplicateBg, const int *nodeIdsToDuplicateEnd, int offset)
2579 checkConnectivityFullyDefined();
2580 std::map<int,int> m;
2582 for(const int *work=nodeIdsToDuplicateBg;work!=nodeIdsToDuplicateEnd;work++,val++)
2584 int *conn=getNodalConnectivity()->getPointer();
2585 const int *connIndex=getNodalConnectivityIndex()->getConstPointer();
2586 int nbOfCells=getNumberOfCells();
2587 for(int i=0;i<nbOfCells;i++)
2588 for(int iconn=connIndex[i]+1;iconn!=connIndex[i+1];iconn++)
2590 int& node=conn[iconn];
2591 if(node>=0)//avoid polyhedron separator
2593 std::map<int,int>::iterator it=m.find(node);
2602 * This method renumbers cells of \a this using the array specified by [old2NewBg;old2NewBg+getNumberOfCells())
2604 * Contrary to MEDCouplingPointSet::renumberNodes, this method makes a permutation without any fuse of cell.
2605 * After the call of this method the number of cells remains the same as before.
2607 * If 'check' equals true the method will check that any elements in [ \a old2NewBg; \a old2NewEnd ) is unique ; if not
2608 * an INTERP_KERNEL::Exception will be thrown. When 'check' equals true [ \a old2NewBg ; \a old2NewEnd ) is not expected to
2609 * be strictly in [0;this->getNumberOfCells()).
2611 * If 'check' equals false the method will not check the content of [ \a old2NewBg ; \a old2NewEnd ).
2612 * To avoid any throw of SIGSEGV when 'check' equals false, the elements in [ \a old2NewBg ; \a old2NewEnd ) should be unique and
2613 * should be contained in[0;this->getNumberOfCells()).
2615 * \param [in] old2NewBg is expected to be a dynamically allocated pointer of size at least equal to this->getNumberOfCells()
2618 void MEDCouplingUMesh::renumberCells(const int *old2NewBg, bool check)
2620 checkConnectivityFullyDefined();
2621 int nbCells=getNumberOfCells();
2622 const int *array=old2NewBg;
2624 array=DataArrayInt::CheckAndPreparePermutation(old2NewBg,old2NewBg+nbCells);
2626 const int *conn=_nodal_connec->getConstPointer();
2627 const int *connI=_nodal_connec_index->getConstPointer();
2628 MCAuto<DataArrayInt> o2n=DataArrayInt::New(); o2n->useArray(array,false,C_DEALLOC,nbCells,1);
2629 MCAuto<DataArrayInt> n2o=o2n->invertArrayO2N2N2O(nbCells);
2630 const int *n2oPtr=n2o->begin();
2631 MCAuto<DataArrayInt> newConn=DataArrayInt::New();
2632 newConn->alloc(_nodal_connec->getNumberOfTuples(),_nodal_connec->getNumberOfComponents());
2633 newConn->copyStringInfoFrom(*_nodal_connec);
2634 MCAuto<DataArrayInt> newConnI=DataArrayInt::New();
2635 newConnI->alloc(_nodal_connec_index->getNumberOfTuples(),_nodal_connec_index->getNumberOfComponents());
2636 newConnI->copyStringInfoFrom(*_nodal_connec_index);
2638 int *newC=newConn->getPointer();
2639 int *newCI=newConnI->getPointer();
2642 for(int i=0;i<nbCells;i++)
2645 int nbOfElts=connI[pos+1]-connI[pos];
2646 newC=std::copy(conn+connI[pos],conn+connI[pos+1],newC);
2651 setConnectivity(newConn,newConnI);
2653 free(const_cast<int *>(array));
2657 * Finds cells whose bounding boxes intersect a given bounding box.
2658 * \param [in] bbox - an array defining the bounding box via coordinates of its
2659 * extremum points in "no interlace" mode, i.e. xMin, xMax, yMin, yMax, zMin,
2661 * \param [in] eps - a factor used to increase size of the bounding box of cell
2662 * before comparing it with \a bbox. This factor is multiplied by the maximal
2663 * extent of the bounding box of cell to produce an addition to this bounding box.
2664 * \return DataArrayInt * - a new instance of DataArrayInt holding ids for found
2665 * cells. The caller is to delete this array using decrRef() as it is no more
2667 * \throw If the coordinates array is not set.
2668 * \throw If the nodal connectivity of cells is not defined.
2670 * \if ENABLE_EXAMPLES
2671 * \ref cpp_mcumesh_getCellsInBoundingBox "Here is a C++ example".<br>
2672 * \ref py_mcumesh_getCellsInBoundingBox "Here is a Python example".
2675 DataArrayInt *MEDCouplingUMesh::getCellsInBoundingBox(const double *bbox, double eps) const
2677 MCAuto<DataArrayInt> elems=DataArrayInt::New(); elems->alloc(0,1);
2678 if(getMeshDimension()==-1)
2680 elems->pushBackSilent(0);
2681 return elems.retn();
2683 int dim=getSpaceDimension();
2684 INTERP_KERNEL::AutoPtr<double> elem_bb=new double[2*dim];
2685 const int* conn = getNodalConnectivity()->getConstPointer();
2686 const int* conn_index= getNodalConnectivityIndex()->getConstPointer();
2687 const double* coords = getCoords()->getConstPointer();
2688 int nbOfCells=getNumberOfCells();
2689 for ( int ielem=0; ielem<nbOfCells;ielem++ )
2691 for (int i=0; i<dim; i++)
2693 elem_bb[i*2]=std::numeric_limits<double>::max();
2694 elem_bb[i*2+1]=-std::numeric_limits<double>::max();
2697 for (int inode=conn_index[ielem]+1; inode<conn_index[ielem+1]; inode++)//+1 due to offset of cell type.
2699 int node= conn[inode];
2700 if(node>=0)//avoid polyhedron separator
2702 for (int idim=0; idim<dim; idim++)
2704 if ( coords[node*dim+idim] < elem_bb[idim*2] )
2706 elem_bb[idim*2] = coords[node*dim+idim] ;
2708 if ( coords[node*dim+idim] > elem_bb[idim*2+1] )
2710 elem_bb[idim*2+1] = coords[node*dim+idim] ;
2715 if (intersectsBoundingBox(elem_bb, bbox, dim, eps))
2716 elems->pushBackSilent(ielem);
2718 return elems.retn();
2722 * Given a boundary box 'bbox' returns elements 'elems' contained in this 'bbox' or touching 'bbox' (within 'eps' distance).
2723 * Warning 'elems' is incremented during the call so if elems is not empty before call returned elements will be
2724 * added in 'elems' parameter.
2726 DataArrayInt *MEDCouplingUMesh::getCellsInBoundingBox(const INTERP_KERNEL::DirectedBoundingBox& bbox, double eps)
2728 MCAuto<DataArrayInt> elems=DataArrayInt::New(); elems->alloc(0,1);
2729 if(getMeshDimension()==-1)
2731 elems->pushBackSilent(0);
2732 return elems.retn();
2734 int dim=getSpaceDimension();
2735 INTERP_KERNEL::AutoPtr<double> elem_bb=new double[2*dim];
2736 const int* conn = getNodalConnectivity()->getConstPointer();
2737 const int* conn_index= getNodalConnectivityIndex()->getConstPointer();
2738 const double* coords = getCoords()->getConstPointer();
2739 int nbOfCells=getNumberOfCells();
2740 for ( int ielem=0; ielem<nbOfCells;ielem++ )
2742 for (int i=0; i<dim; i++)
2744 elem_bb[i*2]=std::numeric_limits<double>::max();
2745 elem_bb[i*2+1]=-std::numeric_limits<double>::max();
2748 for (int inode=conn_index[ielem]+1; inode<conn_index[ielem+1]; inode++)//+1 due to offset of cell type.
2750 int node= conn[inode];
2751 if(node>=0)//avoid polyhedron separator
2753 for (int idim=0; idim<dim; idim++)
2755 if ( coords[node*dim+idim] < elem_bb[idim*2] )
2757 elem_bb[idim*2] = coords[node*dim+idim] ;
2759 if ( coords[node*dim+idim] > elem_bb[idim*2+1] )
2761 elem_bb[idim*2+1] = coords[node*dim+idim] ;
2766 if(intersectsBoundingBox(bbox, elem_bb, dim, eps))
2767 elems->pushBackSilent(ielem);
2769 return elems.retn();
2773 * Returns a type of a cell by its id.
2774 * \param [in] cellId - the id of the cell of interest.
2775 * \return INTERP_KERNEL::NormalizedCellType - enumeration item describing the cell type.
2776 * \throw If \a cellId is invalid. Valid range is [0, \a this->getNumberOfCells() ).
2778 INTERP_KERNEL::NormalizedCellType MEDCouplingUMesh::getTypeOfCell(std::size_t cellId) const
2780 const int *ptI(_nodal_connec_index->begin()),*pt(_nodal_connec->begin());
2781 if(cellId<_nodal_connec_index->getNbOfElems()-1)
2782 return (INTERP_KERNEL::NormalizedCellType) pt[ptI[cellId]];
2785 std::ostringstream oss; oss << "MEDCouplingUMesh::getTypeOfCell : Requesting type of cell #" << cellId << " but it should be in [0," << _nodal_connec_index->getNbOfElems()-1 << ") !";
2786 throw INTERP_KERNEL::Exception(oss.str());
2791 * This method returns a newly allocated array containing cell ids (ascendingly sorted) whose geometric type are equal to type.
2792 * This method does not throw exception if geometric type \a type is not in \a this.
2793 * This method throws an INTERP_KERNEL::Exception if meshdimension of \b this is not equal to those of \b type.
2794 * The coordinates array is not considered here.
2796 * \param [in] type the geometric type
2797 * \return cell ids in this having geometric type \a type.
2799 DataArrayInt *MEDCouplingUMesh::giveCellsWithType(INTERP_KERNEL::NormalizedCellType type) const
2802 MCAuto<DataArrayInt> ret=DataArrayInt::New();
2804 checkConnectivityFullyDefined();
2805 int nbCells=getNumberOfCells();
2806 int mdim=getMeshDimension();
2807 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(type);
2808 if(mdim!=(int)cm.getDimension())
2809 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::giveCellsWithType : Mismatch between mesh dimension and dimension of the cell !");
2810 const int *ptI=_nodal_connec_index->getConstPointer();
2811 const int *pt=_nodal_connec->getConstPointer();
2812 for(int i=0;i<nbCells;i++)
2814 if((INTERP_KERNEL::NormalizedCellType)pt[ptI[i]]==type)
2815 ret->pushBackSilent(i);
2821 * Returns nb of cells having the geometric type \a type. No throw if no cells in \a this has the geometric type \a type.
2823 std::size_t MEDCouplingUMesh::getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType type) const
2825 const int *ptI(_nodal_connec_index->begin()),*pt(_nodal_connec->begin());
2826 std::size_t nbOfCells(getNumberOfCells()),ret(0);
2827 for(std::size_t i=0;i<nbOfCells;i++)
2828 if((INTERP_KERNEL::NormalizedCellType) pt[ptI[i]]==type)
2834 * Returns the nodal connectivity of a given cell.
2835 * The separator of faces within polyhedron connectivity (-1) is not returned, thus
2836 * all returned node ids can be used in getCoordinatesOfNode().
2837 * \param [in] cellId - an id of the cell of interest.
2838 * \param [in,out] conn - a vector where the node ids are appended. It is not
2839 * cleared before the appending.
2840 * \throw If \a cellId is invalid. Valid range is [0, \a this->getNumberOfCells() ).
2842 void MEDCouplingUMesh::getNodeIdsOfCell(std::size_t cellId, std::vector<int>& conn) const
2844 const int *ptI(_nodal_connec_index->begin()),*pt(_nodal_connec->begin());
2845 for(const int *w=pt+ptI[cellId]+1;w!=pt+ptI[cellId+1];w++)
2850 std::string MEDCouplingUMesh::simpleRepr() const
2852 static const char msg0[]="No coordinates specified !";
2853 std::ostringstream ret;
2854 ret << "Unstructured mesh with name : \"" << getName() << "\"\n";
2855 ret << "Description of mesh : \"" << getDescription() << "\"\n";
2857 double tt=getTime(tmpp1,tmpp2);
2858 ret << "Time attached to the mesh [unit] : " << tt << " [" << getTimeUnit() << "]\n";
2859 ret << "Iteration : " << tmpp1 << " Order : " << tmpp2 << "\n";
2861 { ret << "Mesh dimension : " << _mesh_dim << "\nSpace dimension : "; }
2863 { ret << " Mesh dimension has not been set or is invalid !"; }
2866 const int spaceDim=getSpaceDimension();
2867 ret << spaceDim << "\nInfo attached on space dimension : ";
2868 for(int i=0;i<spaceDim;i++)
2869 ret << "\"" << _coords->getInfoOnComponent(i) << "\" ";
2873 ret << msg0 << "\n";
2874 ret << "Number of nodes : ";
2876 ret << getNumberOfNodes() << "\n";
2878 ret << msg0 << "\n";
2879 ret << "Number of cells : ";
2880 if(_nodal_connec!=0 && _nodal_connec_index!=0)
2881 ret << getNumberOfCells() << "\n";
2883 ret << "No connectivity specified !" << "\n";
2884 ret << "Cell types present : ";
2885 for(std::set<INTERP_KERNEL::NormalizedCellType>::const_iterator iter=_types.begin();iter!=_types.end();iter++)
2887 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(*iter);
2888 ret << cm.getRepr() << " ";
2894 std::string MEDCouplingUMesh::advancedRepr() const
2896 std::ostringstream ret;
2897 ret << simpleRepr();
2898 ret << "\nCoordinates array : \n___________________\n\n";
2900 _coords->reprWithoutNameStream(ret);
2902 ret << "No array set !\n";
2903 ret << "\n\nConnectivity arrays : \n_____________________\n\n";
2904 reprConnectivityOfThisLL(ret);
2909 * This method returns a C++ code that is a dump of \a this.
2910 * This method will throw if this is not fully defined.
2912 std::string MEDCouplingUMesh::cppRepr() const
2914 static const char coordsName[]="coords";
2915 static const char connName[]="conn";
2916 static const char connIName[]="connI";
2917 checkFullyDefined();
2918 std::ostringstream ret; ret << "// coordinates" << std::endl;
2919 _coords->reprCppStream(coordsName,ret); ret << std::endl << "// connectivity" << std::endl;
2920 _nodal_connec->reprCppStream(connName,ret); ret << std::endl;
2921 _nodal_connec_index->reprCppStream(connIName,ret); ret << std::endl;
2922 ret << "MEDCouplingUMesh *mesh=MEDCouplingUMesh::New(\"" << getName() << "\"," << getMeshDimension() << ");" << std::endl;
2923 ret << "mesh->setCoords(" << coordsName << ");" << std::endl;
2924 ret << "mesh->setConnectivity(" << connName << "," << connIName << ",true);" << std::endl;
2925 ret << coordsName << "->decrRef(); " << connName << "->decrRef(); " << connIName << "->decrRef();" << std::endl;
2929 std::string MEDCouplingUMesh::reprConnectivityOfThis() const
2931 std::ostringstream ret;
2932 reprConnectivityOfThisLL(ret);
2937 * This method builds a newly allocated instance (with the same name than \a this) that the caller has the responsability to deal with.
2938 * This method returns an instance with all arrays allocated (connectivity, connectivity index, coordinates)
2939 * but with length of these arrays set to 0. It allows to define an "empty" mesh (with nor cells nor nodes but compliant with
2942 * This method expects that \a this has a mesh dimension set and higher or equal to 0. If not an exception will be thrown.
2943 * This method analyzes the 3 arrays of \a this. For each the following behaviour is done : if the array is null a newly one is created
2944 * with number of tuples set to 0, if not the array is taken as this in the returned instance.
2946 MEDCouplingUMesh *MEDCouplingUMesh::buildSetInstanceFromThis(int spaceDim) const
2948 int mdim=getMeshDimension();
2950 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSetInstanceFromThis : invalid mesh dimension ! Should be >= 0 !");
2951 MCAuto<MEDCouplingUMesh> ret=MEDCouplingUMesh::New(getName(),mdim);
2952 MCAuto<DataArrayInt> tmp1,tmp2;
2953 bool needToCpyCT=true;
2956 tmp1=DataArrayInt::New(); tmp1->alloc(0,1);
2964 if(!_nodal_connec_index)
2966 tmp2=DataArrayInt::New(); tmp2->alloc(1,1); tmp2->setIJ(0,0,0);
2971 tmp2=_nodal_connec_index;
2974 ret->setConnectivity(tmp1,tmp2,false);
2979 MCAuto<DataArrayDouble> coords=DataArrayDouble::New(); coords->alloc(0,spaceDim);
2980 ret->setCoords(coords);
2983 ret->setCoords(_coords);
2987 int MEDCouplingUMesh::getNumberOfNodesInCell(int cellId) const
2989 const int *ptI=_nodal_connec_index->getConstPointer();
2990 const int *pt=_nodal_connec->getConstPointer();
2991 if(pt[ptI[cellId]]!=INTERP_KERNEL::NORM_POLYHED)
2992 return ptI[cellId+1]-ptI[cellId]-1;
2994 return (int)std::count_if(pt+ptI[cellId]+1,pt+ptI[cellId+1],std::bind2nd(std::not_equal_to<int>(),-1));
2998 * Returns types of cells of the specified part of \a this mesh.
2999 * This method avoids computing sub-mesh explicitely to get its types.
3000 * \param [in] begin - an array of cell ids of interest.
3001 * \param [in] end - the end of \a begin, i.e. a pointer to its (last+1)-th element.
3002 * \return std::set<INTERP_KERNEL::NormalizedCellType> - a set of enumeration items
3003 * describing the cell types.
3004 * \throw If the coordinates array is not set.
3005 * \throw If the nodal connectivity of cells is not defined.
3006 * \sa getAllGeoTypes()
3008 std::set<INTERP_KERNEL::NormalizedCellType> MEDCouplingUMesh::getTypesOfPart(const int *begin, const int *end) const
3010 checkFullyDefined();
3011 std::set<INTERP_KERNEL::NormalizedCellType> ret;
3012 const int *conn=_nodal_connec->getConstPointer();
3013 const int *connIndex=_nodal_connec_index->getConstPointer();
3014 for(const int *w=begin;w!=end;w++)
3015 ret.insert((INTERP_KERNEL::NormalizedCellType)conn[connIndex[*w]]);
3020 * Defines the nodal connectivity using given connectivity arrays in \ref numbering-indirect format.
3021 * Optionally updates
3022 * a set of types of cells constituting \a this mesh.
3023 * This method is for advanced users having prepared their connectivity before. For
3024 * more info on using this method see \ref MEDCouplingUMeshAdvBuild.
3025 * \param [in] conn - the nodal connectivity array.
3026 * \param [in] connIndex - the nodal connectivity index array.
3027 * \param [in] isComputingTypes - if \c true, the set of types constituting \a this
3030 void MEDCouplingUMesh::setConnectivity(DataArrayInt *conn, DataArrayInt *connIndex, bool isComputingTypes)
3032 DataArrayInt::SetArrayIn(conn,_nodal_connec);
3033 DataArrayInt::SetArrayIn(connIndex,_nodal_connec_index);
3034 if(isComputingTypes)
3040 * Copy constructor. If 'deepCopy' is false \a this is a shallow copy of other.
3041 * If 'deeCpy' is true all arrays (coordinates and connectivities) are deeply copied.
3043 MEDCouplingUMesh::MEDCouplingUMesh(const MEDCouplingUMesh& other, bool deepCpy):MEDCouplingPointSet(other,deepCpy),_mesh_dim(other._mesh_dim),
3044 _nodal_connec(0),_nodal_connec_index(0),
3045 _types(other._types)
3047 if(other._nodal_connec)
3048 _nodal_connec=other._nodal_connec->performCopyOrIncrRef(deepCpy);
3049 if(other._nodal_connec_index)
3050 _nodal_connec_index=other._nodal_connec_index->performCopyOrIncrRef(deepCpy);
3053 MEDCouplingUMesh::~MEDCouplingUMesh()
3056 _nodal_connec->decrRef();
3057 if(_nodal_connec_index)
3058 _nodal_connec_index->decrRef();
3062 * Recomputes a set of cell types of \a this mesh. For more info see
3063 * \ref MEDCouplingUMeshNodalConnectivity.
3065 void MEDCouplingUMesh::computeTypes()
3067 ComputeAllTypesInternal(_types,_nodal_connec,_nodal_connec_index);
3072 * Returns a number of cells constituting \a this mesh.
3073 * \return int - the number of cells in \a this mesh.
3074 * \throw If the nodal connectivity of cells is not defined.
3076 std::size_t MEDCouplingUMesh::getNumberOfCells() const
3078 if(_nodal_connec_index)
3079 return _nodal_connec_index->getNumberOfTuples()-1;
3084 throw INTERP_KERNEL::Exception("Unable to get number of cells because no connectivity specified !");
3088 * Returns a dimension of \a this mesh, i.e. a dimension of cells constituting \a this
3089 * mesh. For more info see \ref meshes.
3090 * \return int - the dimension of \a this mesh.
3091 * \throw If the mesh dimension is not defined using setMeshDimension().
3093 int MEDCouplingUMesh::getMeshDimension() const
3096 throw INTERP_KERNEL::Exception("No mesh dimension specified !");
3101 * Returns a length of the nodal connectivity array.
3102 * This method is for test reason. Normally the integer returned is not useable by
3103 * user. For more info see \ref MEDCouplingUMeshNodalConnectivity.
3104 * \return int - the length of the nodal connectivity array.
3106 int MEDCouplingUMesh::getNodalConnectivityArrayLen() const
3108 return _nodal_connec->getNbOfElems();
3112 * First step of serialization process. Used by ParaMEDMEM and MEDCouplingCorba to transfert data between process.
3114 void MEDCouplingUMesh::getTinySerializationInformation(std::vector<double>& tinyInfoD, std::vector<int>& tinyInfo, std::vector<std::string>& littleStrings) const
3116 MEDCouplingPointSet::getTinySerializationInformation(tinyInfoD,tinyInfo,littleStrings);
3117 tinyInfo.push_back(getMeshDimension());
3118 tinyInfo.push_back(getNumberOfCells());
3120 tinyInfo.push_back(getNodalConnectivityArrayLen());
3122 tinyInfo.push_back(-1);
3126 * First step of unserialization process.
3128 bool MEDCouplingUMesh::isEmptyMesh(const std::vector<int>& tinyInfo) const
3130 return tinyInfo[6]<=0;
3134 * Second step of serialization process.
3135 * \param tinyInfo must be equal to the result given by getTinySerializationInformation method.
3138 * \param littleStrings
3140 void MEDCouplingUMesh::resizeForUnserialization(const std::vector<int>& tinyInfo, DataArrayInt *a1, DataArrayDouble *a2, std::vector<std::string>& littleStrings) const
3142 MEDCouplingPointSet::resizeForUnserialization(tinyInfo,a1,a2,littleStrings);
3144 a1->alloc(tinyInfo[7]+tinyInfo[6]+1,1);
3148 * Third and final step of serialization process.
3150 void MEDCouplingUMesh::serialize(DataArrayInt *&a1, DataArrayDouble *&a2) const
3152 MEDCouplingPointSet::serialize(a1,a2);
3153 if(getMeshDimension()>-1)
3155 a1=DataArrayInt::New();
3156 a1->alloc(getNodalConnectivityArrayLen()+getNumberOfCells()+1,1);
3157 int *ptA1=a1->getPointer();
3158 const int *conn=getNodalConnectivity()->getConstPointer();
3159 const int *index=getNodalConnectivityIndex()->getConstPointer();
3160 ptA1=std::copy(index,index+getNumberOfCells()+1,ptA1);
3161 std::copy(conn,conn+getNodalConnectivityArrayLen(),ptA1);
3168 * Second and final unserialization process.
3169 * \param tinyInfo must be equal to the result given by getTinySerializationInformation method.
3171 void MEDCouplingUMesh::unserialization(const std::vector<double>& tinyInfoD, const std::vector<int>& tinyInfo, const DataArrayInt *a1, DataArrayDouble *a2, const std::vector<std::string>& littleStrings)
3173 MEDCouplingPointSet::unserialization(tinyInfoD,tinyInfo,a1,a2,littleStrings);
3174 setMeshDimension(tinyInfo[5]);
3178 const int *recvBuffer=a1->getConstPointer();
3179 MCAuto<DataArrayInt> myConnecIndex=DataArrayInt::New();
3180 myConnecIndex->alloc(tinyInfo[6]+1,1);
3181 std::copy(recvBuffer,recvBuffer+tinyInfo[6]+1,myConnecIndex->getPointer());
3182 MCAuto<DataArrayInt> myConnec=DataArrayInt::New();
3183 myConnec->alloc(tinyInfo[7],1);
3184 std::copy(recvBuffer+tinyInfo[6]+1,recvBuffer+tinyInfo[6]+1+tinyInfo[7],myConnec->getPointer());
3185 setConnectivity(myConnec, myConnecIndex);
3192 * Returns a new MEDCouplingFieldDouble containing volumes of cells constituting \a this
3194 * For 1D cells, the returned field contains lengths.<br>
3195 * For 2D cells, the returned field contains areas.<br>
3196 * For 3D cells, the returned field contains volumes.
3197 * \param [in] isAbs - if \c true, the computed cell volume does not reflect cell
3198 * orientation, i.e. the volume is always positive.
3199 * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on cells
3200 * and one time . The caller is to delete this field using decrRef() as it is no
3203 MEDCouplingFieldDouble *MEDCouplingUMesh::getMeasureField(bool isAbs) const
3205 std::string name="MeasureOfMesh_";
3207 int nbelem=getNumberOfCells();
3208 MCAuto<MEDCouplingFieldDouble> field=MEDCouplingFieldDouble::New(ON_CELLS,ONE_TIME);
3209 field->setName(name);
3210 MCAuto<DataArrayDouble> array=DataArrayDouble::New();
3211 array->alloc(nbelem,1);
3212 double *area_vol=array->getPointer();
3213 field->setArray(array) ; array=0;
3214 field->setMesh(const_cast<MEDCouplingUMesh *>(this));
3215 field->synchronizeTimeWithMesh();
3216 if(getMeshDimension()!=-1)
3219 INTERP_KERNEL::NormalizedCellType type;
3220 int dim_space=getSpaceDimension();
3221 const double *coords=getCoords()->getConstPointer();
3222 const int *connec=getNodalConnectivity()->getConstPointer();
3223 const int *connec_index=getNodalConnectivityIndex()->getConstPointer();
3224 for(int iel=0;iel<nbelem;iel++)
3226 ipt=connec_index[iel];
3227 type=(INTERP_KERNEL::NormalizedCellType)connec[ipt];
3228 area_vol[iel]=INTERP_KERNEL::computeVolSurfOfCell2<int,INTERP_KERNEL::ALL_C_MODE>(type,connec+ipt+1,connec_index[iel+1]-ipt-1,coords,dim_space);
3231 std::transform(area_vol,area_vol+nbelem,area_vol,std::ptr_fun<double,double>(fabs));
3235 area_vol[0]=std::numeric_limits<double>::max();
3237 return field.retn();
3241 * Returns a new DataArrayDouble containing volumes of specified cells of \a this
3243 * For 1D cells, the returned array contains lengths.<br>
3244 * For 2D cells, the returned array contains areas.<br>
3245 * For 3D cells, the returned array contains volumes.
3246 * This method avoids building explicitly a part of \a this mesh to perform the work.
3247 * \param [in] isAbs - if \c true, the computed cell volume does not reflect cell
3248 * orientation, i.e. the volume is always positive.
3249 * \param [in] begin - an array of cell ids of interest.
3250 * \param [in] end - the end of \a begin, i.e. a pointer to its (last+1)-th element.
3251 * \return DataArrayDouble * - a new instance of DataArrayDouble. The caller is to
3252 * delete this array using decrRef() as it is no more needed.
3254 * \if ENABLE_EXAMPLES
3255 * \ref cpp_mcumesh_getPartMeasureField "Here is a C++ example".<br>
3256 * \ref py_mcumesh_getPartMeasureField "Here is a Python example".
3258 * \sa getMeasureField()
3260 DataArrayDouble *MEDCouplingUMesh::getPartMeasureField(bool isAbs, const int *begin, const int *end) const
3262 std::string name="PartMeasureOfMesh_";
3264 int nbelem=(int)std::distance(begin,end);
3265 MCAuto<DataArrayDouble> array=DataArrayDouble::New();
3266 array->setName(name);
3267 array->alloc(nbelem,1);
3268 double *area_vol=array->getPointer();
3269 if(getMeshDimension()!=-1)
3272 INTERP_KERNEL::NormalizedCellType type;
3273 int dim_space=getSpaceDimension();
3274 const double *coords=getCoords()->getConstPointer();
3275 const int *connec=getNodalConnectivity()->getConstPointer();
3276 const int *connec_index=getNodalConnectivityIndex()->getConstPointer();
3277 for(const int *iel=begin;iel!=end;iel++)
3279 ipt=connec_index[*iel];
3280 type=(INTERP_KERNEL::NormalizedCellType)connec[ipt];
3281 *area_vol++=INTERP_KERNEL::computeVolSurfOfCell2<int,INTERP_KERNEL::ALL_C_MODE>(type,connec+ipt+1,connec_index[*iel+1]-ipt-1,coords,dim_space);
3284 std::transform(array->getPointer(),area_vol,array->getPointer(),std::ptr_fun<double,double>(fabs));
3288 area_vol[0]=std::numeric_limits<double>::max();
3290 return array.retn();
3294 * Returns a new MEDCouplingFieldDouble containing volumes of cells of a dual mesh of
3295 * \a this one. The returned field contains the dual cell volume for each corresponding
3296 * node in \a this mesh. In other words, the field returns the getMeasureField() of
3297 * the dual mesh in P1 sens of \a this.<br>
3298 * For 1D cells, the returned field contains lengths.<br>
3299 * For 2D cells, the returned field contains areas.<br>
3300 * For 3D cells, the returned field contains volumes.
3301 * This method is useful to check "P1*" conservative interpolators.
3302 * \param [in] isAbs - if \c true, the computed cell volume does not reflect cell
3303 * orientation, i.e. the volume is always positive.
3304 * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
3305 * nodes and one time. The caller is to delete this array using decrRef() as
3306 * it is no more needed.
3308 MEDCouplingFieldDouble *MEDCouplingUMesh::getMeasureFieldOnNode(bool isAbs) const
3310 MCAuto<MEDCouplingFieldDouble> tmp=getMeasureField(isAbs);
3311 std::string name="MeasureOnNodeOfMesh_";
3313 int nbNodes=getNumberOfNodes();
3314 MCAuto<MEDCouplingFieldDouble> ret=MEDCouplingFieldDouble::New(ON_NODES);
3315 double cst=1./((double)getMeshDimension()+1.);
3316 MCAuto<DataArrayDouble> array=DataArrayDouble::New();
3317 array->alloc(nbNodes,1);
3318 double *valsToFill=array->getPointer();
3319 std::fill(valsToFill,valsToFill+nbNodes,0.);
3320 const double *values=tmp->getArray()->getConstPointer();
3321 MCAuto<DataArrayInt> da=DataArrayInt::New();
3322 MCAuto<DataArrayInt> daInd=DataArrayInt::New();
3323 getReverseNodalConnectivity(da,daInd);
3324 const int *daPtr=da->getConstPointer();
3325 const int *daIPtr=daInd->getConstPointer();
3326 for(int i=0;i<nbNodes;i++)
3327 for(const int *cell=daPtr+daIPtr[i];cell!=daPtr+daIPtr[i+1];cell++)
3328 valsToFill[i]+=cst*values[*cell];
3330 ret->setArray(array);
3335 * Returns a new MEDCouplingFieldDouble holding normal vectors to cells of \a this
3336 * mesh. The returned normal vectors to each cell have a norm2 equal to 1.
3337 * The computed vectors have <em> this->getMeshDimension()+1 </em> components
3338 * and are normalized.
3339 * <br> \a this can be either
3340 * - a 2D mesh in 2D or 3D space or
3341 * - an 1D mesh in 2D space.
3343 * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
3344 * cells and one time. The caller is to delete this field using decrRef() as
3345 * it is no more needed.
3346 * \throw If the nodal connectivity of cells is not defined.
3347 * \throw If the coordinates array is not set.
3348 * \throw If the mesh dimension is not set.
3349 * \throw If the mesh and space dimension is not as specified above.
3351 MEDCouplingFieldDouble *MEDCouplingUMesh::buildOrthogonalField() const
3353 if((getMeshDimension()!=2) && (getMeshDimension()!=1 || getSpaceDimension()!=2))
3354 throw INTERP_KERNEL::Exception("Expected a umesh with ( meshDim == 2 spaceDim == 2 or 3 ) or ( meshDim == 1 spaceDim == 2 ) !");
3355 MCAuto<MEDCouplingFieldDouble> ret=MEDCouplingFieldDouble::New(ON_CELLS,ONE_TIME);
3356 MCAuto<DataArrayDouble> array=DataArrayDouble::New();
3357 int nbOfCells=getNumberOfCells();
3358 int nbComp=getMeshDimension()+1;
3359 array->alloc(nbOfCells,nbComp);
3360 double *vals=array->getPointer();
3361 const int *connI=_nodal_connec_index->getConstPointer();
3362 const int *conn=_nodal_connec->getConstPointer();
3363 const double *coords=_coords->getConstPointer();
3364 if(getMeshDimension()==2)
3366 if(getSpaceDimension()==3)
3368 MCAuto<DataArrayDouble> loc=computeCellCenterOfMass();
3369 const double *locPtr=loc->getConstPointer();
3370 for(int i=0;i<nbOfCells;i++,vals+=3)
3372 int offset=connI[i];
3373 INTERP_KERNEL::crossprod<3>(locPtr+3*i,coords+3*conn[offset+1],coords+3*conn[offset+2],vals);
3374 double n=INTERP_KERNEL::norm<3>(vals);
3375 std::transform(vals,vals+3,vals,std::bind2nd(std::multiplies<double>(),1./n));
3380 MCAuto<MEDCouplingFieldDouble> isAbs=getMeasureField(false);
3381 const double *isAbsPtr=isAbs->getArray()->begin();
3382 for(int i=0;i<nbOfCells;i++,isAbsPtr++)
3383 { vals[3*i]=0.; vals[3*i+1]=0.; vals[3*i+2]=*isAbsPtr>0.?1.:-1.; }
3386 else//meshdimension==1
3389 for(int i=0;i<nbOfCells;i++)
3391 int offset=connI[i];
3392 std::transform(coords+2*conn[offset+2],coords+2*conn[offset+2]+2,coords+2*conn[offset+1],tmp,std::minus<double>());
3393 double n=INTERP_KERNEL::norm<2>(tmp);
3394 std::transform(tmp,tmp+2,tmp,std::bind2nd(std::multiplies<double>(),1./n));
3399 ret->setArray(array);
3401 ret->synchronizeTimeWithSupport();
3406 * Returns a new MEDCouplingFieldDouble holding normal vectors to specified cells of
3407 * \a this mesh. The computed vectors have <em> this->getMeshDimension()+1 </em> components
3408 * and are normalized.
3409 * <br> \a this can be either
3410 * - a 2D mesh in 2D or 3D space or
3411 * - an 1D mesh in 2D space.
3413 * This method avoids building explicitly a part of \a this mesh to perform the work.
3414 * \param [in] begin - an array of cell ids of interest.
3415 * \param [in] end - the end of \a begin, i.e. a pointer to its (last+1)-th element.
3416 * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
3417 * cells and one time. The caller is to delete this field using decrRef() as
3418 * it is no more needed.
3419 * \throw If the nodal connectivity of cells is not defined.
3420 * \throw If the coordinates array is not set.
3421 * \throw If the mesh dimension is not set.
3422 * \throw If the mesh and space dimension is not as specified above.
3423 * \sa buildOrthogonalField()
3425 * \if ENABLE_EXAMPLES
3426 * \ref cpp_mcumesh_buildPartOrthogonalField "Here is a C++ example".<br>
3427 * \ref py_mcumesh_buildPartOrthogonalField "Here is a Python example".
3430 MEDCouplingFieldDouble *MEDCouplingUMesh::buildPartOrthogonalField(const int *begin, const int *end) const
3432 if((getMeshDimension()!=2) && (getMeshDimension()!=1 || getSpaceDimension()!=2))
3433 throw INTERP_KERNEL::Exception("Expected a umesh with ( meshDim == 2 spaceDim == 2 or 3 ) or ( meshDim == 1 spaceDim == 2 ) !");
3434 MCAuto<MEDCouplingFieldDouble> ret=MEDCouplingFieldDouble::New(ON_CELLS,ONE_TIME);
3435 MCAuto<DataArrayDouble> array=DataArrayDouble::New();
3436 std::size_t nbelems=std::distance(begin,end);
3437 int nbComp=getMeshDimension()+1;
3438 array->alloc((int)nbelems,nbComp);
3439 double *vals=array->getPointer();
3440 const int *connI=_nodal_connec_index->getConstPointer();
3441 const int *conn=_nodal_connec->getConstPointer();
3442 const double *coords=_coords->getConstPointer();
3443 if(getMeshDimension()==2)
3445 if(getSpaceDimension()==3)
3447 MCAuto<DataArrayDouble> loc=getPartBarycenterAndOwner(begin,end);
3448 const double *locPtr=loc->getConstPointer();
3449 for(const int *i=begin;i!=end;i++,vals+=3,locPtr+=3)
3451 int offset=connI[*i];
3452 INTERP_KERNEL::crossprod<3>(locPtr,coords+3*conn[offset+1],coords+3*conn[offset+2],vals);
3453 double n=INTERP_KERNEL::norm<3>(vals);
3454 std::transform(vals,vals+3,vals,std::bind2nd(std::multiplies<double>(),1./n));
3459 for(std::size_t i=0;i<nbelems;i++)
3460 { vals[3*i]=0.; vals[3*i+1]=0.; vals[3*i+2]=1.; }
3463 else//meshdimension==1
3466 for(const int *i=begin;i!=end;i++)
3468 int offset=connI[*i];
3469 std::transform(coords+2*conn[offset+2],coords+2*conn[offset+2]+2,coords+2*conn[offset+1],tmp,std::minus<double>());
3470 double n=INTERP_KERNEL::norm<2>(tmp);
3471 std::transform(tmp,tmp+2,tmp,std::bind2nd(std::multiplies<double>(),1./n));
3476 ret->setArray(array);
3478 ret->synchronizeTimeWithSupport();
3483 * Returns a new MEDCouplingFieldDouble holding a direction vector for each SEG2 in \a
3484 * this 1D mesh. The computed vectors have <em> this->getSpaceDimension() </em> components
3485 * and are \b not normalized.
3486 * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
3487 * cells and one time. The caller is to delete this field using decrRef() as
3488 * it is no more needed.
3489 * \throw If the nodal connectivity of cells is not defined.
3490 * \throw If the coordinates array is not set.
3491 * \throw If \a this->getMeshDimension() != 1.
3492 * \throw If \a this mesh includes cells of type other than SEG2.
3494 MEDCouplingFieldDouble *MEDCouplingUMesh::buildDirectionVectorField() const
3496 if(getMeshDimension()!=1)
3497 throw INTERP_KERNEL::Exception("Expected a umesh with meshDim == 1 for buildDirectionVectorField !");
3498 if(_types.size()!=1 || *(_types.begin())!=INTERP_KERNEL::NORM_SEG2)
3499 throw INTERP_KERNEL::Exception("Expected a umesh with only NORM_SEG2 type of elements for buildDirectionVectorField !");
3500 MCAuto<MEDCouplingFieldDouble> ret=MEDCouplingFieldDouble::New(ON_CELLS,ONE_TIME);
3501 MCAuto<DataArrayDouble> array=DataArrayDouble::New();
3502 int nbOfCells=getNumberOfCells();
3503 int spaceDim=getSpaceDimension();
3504 array->alloc(nbOfCells,spaceDim);
3505 double *pt=array->getPointer();
3506 const double *coo=getCoords()->getConstPointer();
3507 std::vector<int> conn;
3509 for(int i=0;i<nbOfCells;i++)
3512 getNodeIdsOfCell(i,conn);
3513 pt=std::transform(coo+conn[1]*spaceDim,coo+(conn[1]+1)*spaceDim,coo+conn[0]*spaceDim,pt,std::minus<double>());
3515 ret->setArray(array);
3517 ret->synchronizeTimeWithSupport();
3522 * Creates a 2D mesh by cutting \a this 3D mesh with a plane. In addition to the mesh,
3523 * returns a new DataArrayInt, of length equal to the number of 2D cells in the result
3524 * mesh, holding, for each cell in the result mesh, an id of a 3D cell it comes
3525 * from. If a result face is shared by two 3D cells, then the face in included twice in
3527 * \param [in] origin - 3 components of a point defining location of the plane.
3528 * \param [in] vec - 3 components of a vector normal to the plane. Vector magnitude
3529 * must be greater than 1e-6.
3530 * \param [in] eps - half-thickness of the plane.
3531 * \param [out] cellIds - a new instance of DataArrayInt holding ids of 3D cells
3532 * producing correspondent 2D cells. The caller is to delete this array
3533 * using decrRef() as it is no more needed.
3534 * \return MEDCouplingUMesh * - a new instance of MEDCouplingUMesh. This mesh does
3535 * not share the node coordinates array with \a this mesh. The caller is to
3536 * delete this mesh using decrRef() as it is no more needed.
3537 * \throw If the coordinates array is not set.
3538 * \throw If the nodal connectivity of cells is not defined.
3539 * \throw If \a this->getMeshDimension() != 3 or \a this->getSpaceDimension() != 3.
3540 * \throw If magnitude of \a vec is less than 1e-6.
3541 * \throw If the plane does not intersect any 3D cell of \a this mesh.
3542 * \throw If \a this includes quadratic cells.
3544 MEDCouplingUMesh *MEDCouplingUMesh::buildSlice3D(const double *origin, const double *vec, double eps, DataArrayInt *&cellIds) const
3546 checkFullyDefined();
3547 if(getMeshDimension()!=3 || getSpaceDimension()!=3)
3548 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSlice3D works on umeshes with meshdim equal to 3 and spaceDim equal to 3 too!");
3549 MCAuto<DataArrayInt> candidates=getCellIdsCrossingPlane(origin,vec,eps);
3550 if(candidates->empty())
3551 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSlice3D : No 3D cells in this intercepts the specified plane considering bounding boxes !");
3552 std::vector<int> nodes;
3553 DataArrayInt *cellIds1D=0;
3554 MCAuto<MEDCouplingUMesh> subMesh=static_cast<MEDCouplingUMesh*>(buildPartOfMySelf(candidates->begin(),candidates->end(),false));
3555 subMesh->findNodesOnPlane(origin,vec,eps,nodes);
3556 MCAuto<DataArrayInt> desc1=DataArrayInt::New(),desc2=DataArrayInt::New();
3557 MCAuto<DataArrayInt> descIndx1=DataArrayInt::New(),descIndx2=DataArrayInt::New();
3558 MCAuto<DataArrayInt> revDesc1=DataArrayInt::New(),revDesc2=DataArrayInt::New();
3559 MCAuto<DataArrayInt> revDescIndx1=DataArrayInt::New(),revDescIndx2=DataArrayInt::New();
3560 MCAuto<MEDCouplingUMesh> mDesc2=subMesh->buildDescendingConnectivity(desc2,descIndx2,revDesc2,revDescIndx2);//meshDim==2 spaceDim==3
3561 revDesc2=0; revDescIndx2=0;
3562 MCAuto<MEDCouplingUMesh> mDesc1=mDesc2->buildDescendingConnectivity(desc1,descIndx1,revDesc1,revDescIndx1);//meshDim==1 spaceDim==3
3563 revDesc1=0; revDescIndx1=0;
3564 mDesc1->fillCellIdsToKeepFromNodeIds(&nodes[0],&nodes[0]+nodes.size(),true,cellIds1D);
3565 MCAuto<DataArrayInt> cellIds1DTmp(cellIds1D);
3567 std::vector<int> cut3DCurve(mDesc1->getNumberOfCells(),-2);
3568 for(const int *it=cellIds1D->begin();it!=cellIds1D->end();it++)
3570 mDesc1->split3DCurveWithPlane(origin,vec,eps,cut3DCurve);
3571 std::vector< std::pair<int,int> > cut3DSurf(mDesc2->getNumberOfCells());
3572 AssemblyForSplitFrom3DCurve(cut3DCurve,nodes,mDesc2->getNodalConnectivity()->getConstPointer(),mDesc2->getNodalConnectivityIndex()->getConstPointer(),
3573 mDesc1->getNodalConnectivity()->getConstPointer(),mDesc1->getNodalConnectivityIndex()->getConstPointer(),
3574 desc1->getConstPointer(),descIndx1->getConstPointer(),cut3DSurf);
3575 MCAuto<DataArrayInt> conn(DataArrayInt::New()),connI(DataArrayInt::New()),cellIds2(DataArrayInt::New());
3576 connI->pushBackSilent(0); conn->alloc(0,1); cellIds2->alloc(0,1);
3577 subMesh->assemblyForSplitFrom3DSurf(cut3DSurf,desc2->getConstPointer(),descIndx2->getConstPointer(),conn,connI,cellIds2);
3578 if(cellIds2->empty())
3579 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSlice3D : No 3D cells in this intercepts the specified plane !");
3580 MCAuto<MEDCouplingUMesh> ret=MEDCouplingUMesh::New("Slice3D",2);
3581 ret->setCoords(mDesc1->getCoords());
3582 ret->setConnectivity(conn,connI,true);
3583 cellIds=candidates->selectByTupleId(cellIds2->begin(),cellIds2->end());
3588 * Creates an 1D mesh by cutting \a this 2D mesh in 3D space with a plane. In
3589 addition to the mesh, returns a new DataArrayInt, of length equal to the number of 1D cells in the result mesh, holding, for each cell in the result mesh, an id of a 2D cell it comes
3590 from. If a result segment is shared by two 2D cells, then the segment in included twice in
3592 * \param [in] origin - 3 components of a point defining location of the plane.
3593 * \param [in] vec - 3 components of a vector normal to the plane. Vector magnitude
3594 * must be greater than 1e-6.
3595 * \param [in] eps - half-thickness of the plane.
3596 * \param [out] cellIds - a new instance of DataArrayInt holding ids of faces
3597 * producing correspondent segments. The caller is to delete this array
3598 * using decrRef() as it is no more needed.
3599 * \return MEDCouplingUMesh * - a new instance of MEDCouplingUMesh. This is an 1D
3600 * mesh in 3D space. This mesh does not share the node coordinates array with
3601 * \a this mesh. The caller is to delete this mesh using decrRef() as it is
3603 * \throw If the coordinates array is not set.
3604 * \throw If the nodal connectivity of cells is not defined.
3605 * \throw If \a this->getMeshDimension() != 2 or \a this->getSpaceDimension() != 3.
3606 * \throw If magnitude of \a vec is less than 1e-6.
3607 * \throw If the plane does not intersect any 2D cell of \a this mesh.
3608 * \throw If \a this includes quadratic cells.
3610 MEDCouplingUMesh *MEDCouplingUMesh::buildSlice3DSurf(const double *origin, const double *vec, double eps, DataArrayInt *&cellIds) const
3612 checkFullyDefined();
3613 if(getMeshDimension()!=2 || getSpaceDimension()!=3)
3614 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSlice3DSurf works on umeshes with meshdim equal to 2 and spaceDim equal to 3 !");
3615 MCAuto<DataArrayInt> candidates(getCellIdsCrossingPlane(origin,vec,eps));
3616 if(candidates->empty())
3617 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSlice3DSurf : No 3D surf cells in this intercepts the specified plane considering bounding boxes !");
3618 std::vector<int> nodes;
3619 DataArrayInt *cellIds1D(0);
3620 MCAuto<MEDCouplingUMesh> subMesh(buildPartOfMySelf(candidates->begin(),candidates->end(),false));
3621 subMesh->findNodesOnPlane(origin,vec,eps,nodes);
3622 MCAuto<DataArrayInt> desc1(DataArrayInt::New()),descIndx1(DataArrayInt::New()),revDesc1(DataArrayInt::New()),revDescIndx1(DataArrayInt::New());
3623 MCAuto<MEDCouplingUMesh> mDesc1(subMesh->buildDescendingConnectivity(desc1,descIndx1,revDesc1,revDescIndx1));//meshDim==1 spaceDim==3
3624 mDesc1->fillCellIdsToKeepFromNodeIds(&nodes[0],&nodes[0]+nodes.size(),true,cellIds1D);
3625 MCAuto<DataArrayInt> cellIds1DTmp(cellIds1D);
3627 std::vector<int> cut3DCurve(mDesc1->getNumberOfCells(),-2);
3628 for(const int *it=cellIds1D->begin();it!=cellIds1D->end();it++)
3630 mDesc1->split3DCurveWithPlane(origin,vec,eps,cut3DCurve);
3631 int ncellsSub=subMesh->getNumberOfCells();
3632 std::vector< std::pair<int,int> > cut3DSurf(ncellsSub);
3633 AssemblyForSplitFrom3DCurve(cut3DCurve,nodes,subMesh->getNodalConnectivity()->getConstPointer(),subMesh->getNodalConnectivityIndex()->getConstPointer(),
3634 mDesc1->getNodalConnectivity()->getConstPointer(),mDesc1->getNodalConnectivityIndex()->getConstPointer(),
3635 desc1->getConstPointer(),descIndx1->getConstPointer(),cut3DSurf);
3636 MCAuto<DataArrayInt> conn(DataArrayInt::New()),connI(DataArrayInt::New()),cellIds2(DataArrayInt::New()); connI->pushBackSilent(0);
3638 const int *nodal=subMesh->getNodalConnectivity()->getConstPointer();
3639 const int *nodalI=subMesh->getNodalConnectivityIndex()->getConstPointer();
3640 for(int i=0;i<ncellsSub;i++)
3642 if(cut3DSurf[i].first!=-1 && cut3DSurf[i].second!=-1)
3644 if(cut3DSurf[i].first!=-2)
3646 conn->pushBackSilent((int)INTERP_KERNEL::NORM_SEG2); conn->pushBackSilent(cut3DSurf[i].first); conn->pushBackSilent(cut3DSurf[i].second);
3647 connI->pushBackSilent(conn->getNumberOfTuples());
3648 cellIds2->pushBackSilent(i);
3652 int cellId3DSurf=cut3DSurf[i].second;
3653 int offset=nodalI[cellId3DSurf]+1;
3654 int nbOfEdges=nodalI[cellId3DSurf+1]-offset;
3655 for(int j=0;j<nbOfEdges;j++)
3657 conn->pushBackSilent((int)INTERP_KERNEL::NORM_SEG2); conn->pushBackSilent(nodal[offset+j]); conn->pushBackSilent(nodal[offset+(j+1)%nbOfEdges]);
3658 connI->pushBackSilent(conn->getNumberOfTuples());
3659 cellIds2->pushBackSilent(cellId3DSurf);
3664 if(cellIds2->empty())
3665 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSlice3DSurf : No 3DSurf cells in this intercepts the specified plane !");
3666 MCAuto<MEDCouplingUMesh> ret=MEDCouplingUMesh::New("Slice3DSurf",1);
3667 ret->setCoords(mDesc1->getCoords());
3668 ret->setConnectivity(conn,connI,true);
3669 cellIds=candidates->selectByTupleId(cellIds2->begin(),cellIds2->end());
3673 MCAuto<MEDCouplingUMesh> MEDCouplingUMesh::clipSingle3DCellByPlane(const double origin[3], const double vec[3], double eps) const
3675 checkFullyDefined();
3676 if(getMeshDimension()!=3 || getSpaceDimension()!=3)
3677 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::clipSingle3DCellByPlane works on umeshes with meshdim equal to 3 and spaceDim equal to 3 too!");
3678 if(getNumberOfCells()!=1)
3679 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::clipSingle3DCellByPlane works only on mesh containing exactly one cell !");
3681 std::vector<int> nodes;
3682 findNodesOnPlane(origin,vec,eps,nodes);
3683 MCAuto<DataArrayInt> desc1(DataArrayInt::New()),desc2(DataArrayInt::New()),descIndx1(DataArrayInt::New()),descIndx2(DataArrayInt::New()),revDesc1(DataArrayInt::New()),revDesc2(DataArrayInt::New()),revDescIndx1(DataArrayInt::New()),revDescIndx2(DataArrayInt::New());
3684 MCAuto<MEDCouplingUMesh> mDesc2(buildDescendingConnectivity(desc2,descIndx2,revDesc2,revDescIndx2));//meshDim==2 spaceDim==3
3685 revDesc2=0; revDescIndx2=0;
3686 MCAuto<MEDCouplingUMesh> mDesc1(mDesc2->buildDescendingConnectivity(desc1,descIndx1,revDesc1,revDescIndx1));//meshDim==1 spaceDim==3
3687 revDesc1=0; revDescIndx1=0;
3688 DataArrayInt *cellIds1D(0);
3689 mDesc1->fillCellIdsToKeepFromNodeIds(&nodes[0],&nodes[0]+nodes.size(),true,cellIds1D);
3690 MCAuto<DataArrayInt> cellIds1DTmp(cellIds1D);
3691 std::vector<int> cut3DCurve(mDesc1->getNumberOfCells(),-2);
3692 for(const int *it=cellIds1D->begin();it!=cellIds1D->end();it++)
3696 int oldNbNodes(mDesc1->getNumberOfNodes());
3697 mDesc1->split3DCurveWithPlane(origin,vec,eps,cut3DCurve);
3698 sameNbNodes=(mDesc1->getNumberOfNodes()==oldNbNodes);
3700 std::vector< std::pair<int,int> > cut3DSurf(mDesc2->getNumberOfCells());
3701 AssemblyForSplitFrom3DCurve(cut3DCurve,nodes,mDesc2->getNodalConnectivity()->begin(),mDesc2->getNodalConnectivityIndex()->begin(),
3702 mDesc1->getNodalConnectivity()->begin(),mDesc1->getNodalConnectivityIndex()->begin(),
3703 desc1->begin(),descIndx1->begin(),cut3DSurf);
3704 MCAuto<DataArrayInt> conn(DataArrayInt::New()),connI(DataArrayInt::New());
3705 connI->pushBackSilent(0); conn->alloc(0,1);
3707 MCAuto<DataArrayInt> cellIds2(DataArrayInt::New()); cellIds2->alloc(0,1);
3708 assemblyForSplitFrom3DSurf(cut3DSurf,desc2->begin(),descIndx2->begin(),conn,connI,cellIds2);
3709 if(cellIds2->empty())
3710 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSlice3D : No 3D cells in this intercepts the specified plane !");
3712 std::vector<std::vector<int> > res;
3713 buildSubCellsFromCut(cut3DSurf,desc2->begin(),descIndx2->begin(),mDesc1->getCoords()->begin(),eps,res);
3714 std::size_t sz(res.size());
3715 if(res.size()==mDesc1->getNumberOfCells() && sameNbNodes)
3716 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::clipSingle3DCellByPlane : cell is not clipped !");
3717 for(std::size_t i=0;i<sz;i++)
3719 conn->pushBackSilent((int)INTERP_KERNEL::NORM_POLYGON);
3720 conn->insertAtTheEnd(res[i].begin(),res[i].end());
3721 connI->pushBackSilent(conn->getNumberOfTuples());
3723 MCAuto<MEDCouplingUMesh> ret(MEDCouplingUMesh::New("",2));
3724 ret->setCoords(mDesc1->getCoords());
3725 ret->setConnectivity(conn,connI,true);
3726 int nbCellsRet(ret->getNumberOfCells());
3728 MCAuto<DataArrayDouble> vec2(DataArrayDouble::New()); vec2->alloc(1,3); std::copy(vec,vec+3,vec2->getPointer());
3729 MCAuto<MEDCouplingFieldDouble> ortho(ret->buildOrthogonalField());
3730 MCAuto<DataArrayDouble> ortho2(ortho->getArray()->selectByTupleIdSafeSlice(0,1,1));
3731 MCAuto<DataArrayDouble> dott(DataArrayDouble::Dot(ortho2,vec2));
3732 MCAuto<DataArrayDouble> ccm(ret->computeCellCenterOfMass());
3733 MCAuto<DataArrayDouble> occm;
3735 MCAuto<DataArrayDouble> pt(DataArrayDouble::New()); pt->alloc(1,3); std::copy(origin,origin+3,pt->getPointer());
3736 occm=DataArrayDouble::Substract(ccm,pt);
3738 vec2=DataArrayDouble::New(); vec2->alloc(nbCellsRet,3);
3739 vec2->setPartOfValuesSimple1(vec[0],0,nbCellsRet,1,0,1,1); vec2->setPartOfValuesSimple1(vec[1],0,nbCellsRet,1,1,2,1); vec2->setPartOfValuesSimple1(vec[2],0,nbCellsRet,1,2,3,1);
3740 MCAuto<DataArrayDouble> dott2(DataArrayDouble::Dot(occm,vec2));
3742 const int *cPtr(ret->getNodalConnectivity()->begin()),*ciPtr(ret->getNodalConnectivityIndex()->begin());
3743 MCAuto<MEDCouplingUMesh> ret2(MEDCouplingUMesh::New("Clip3D",3));
3744 ret2->setCoords(mDesc1->getCoords());
3745 MCAuto<DataArrayInt> conn2(DataArrayInt::New()),conn2I(DataArrayInt::New());
3746 conn2I->pushBackSilent(0); conn2->alloc(0,1);
3747 std::vector<int> cell0(1,(int)INTERP_KERNEL::NORM_POLYHED);
3748 std::vector<int> cell1(1,(int)INTERP_KERNEL::NORM_POLYHED);
3749 if(dott->getIJ(0,0)>0)
3751 cell0.insert(cell0.end(),cPtr+1,cPtr+ciPtr[1]);
3752 std::reverse_copy(cPtr+1,cPtr+ciPtr[1],std::inserter(cell1,cell1.end()));
3756 cell1.insert(cell1.end(),cPtr+1,cPtr+ciPtr[1]);
3757 std::reverse_copy(cPtr+1,cPtr+ciPtr[1],std::inserter(cell0,cell0.end()));
3759 for(int i=1;i<nbCellsRet;i++)
3761 if(dott2->getIJ(i,0)<0)
3763 if(ciPtr[i+1]-ciPtr[i]>=4)
3765 cell0.push_back(-1);
3766 cell0.insert(cell0.end(),cPtr+ciPtr[i]+1,cPtr+ciPtr[i+1]);
3771 if(ciPtr[i+1]-ciPtr[i]>=4)
3773 cell1.push_back(-1);
3774 cell1.insert(cell1.end(),cPtr+ciPtr[i]+1,cPtr+ciPtr[i+1]);
3778 conn2->insertAtTheEnd(cell0.begin(),cell0.end());
3779 conn2I->pushBackSilent(conn2->getNumberOfTuples());
3780 conn2->insertAtTheEnd(cell1.begin(),cell1.end());
3781 conn2I->pushBackSilent(conn2->getNumberOfTuples());
3782 ret2->setConnectivity(conn2,conn2I,true);
3783 ret2->checkConsistencyLight();
3784 ret2->orientCorrectlyPolyhedrons();
3789 * Finds cells whose bounding boxes intersect a given plane.
3790 * \param [in] origin - 3 components of a point defining location of the plane.
3791 * \param [in] vec - 3 components of a vector normal to the plane. Vector magnitude
3792 * must be greater than 1e-6.
3793 * \param [in] eps - half-thickness of the plane.
3794 * \return DataArrayInt * - a new instance of DataArrayInt holding ids of the found
3795 * cells. The caller is to delete this array using decrRef() as it is no more
3797 * \throw If the coordinates array is not set.
3798 * \throw If the nodal connectivity of cells is not defined.
3799 * \throw If \a this->getSpaceDimension() != 3.
3800 * \throw If magnitude of \a vec is less than 1e-6.
3801 * \sa buildSlice3D()
3803 DataArrayInt *MEDCouplingUMesh::getCellIdsCrossingPlane(const double *origin, const double *vec, double eps) const
3805 checkFullyDefined();
3806 if(getSpaceDimension()!=3)
3807 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSlice3D works on umeshes with spaceDim equal to 3 !");
3808 double normm=sqrt(vec[0]*vec[0]+vec[1]*vec[1]+vec[2]*vec[2]);
3810 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getCellIdsCrossingPlane : parameter 'vec' should have a norm2 greater than 1e-6 !");
3812 vec2[0]=vec[1]; vec2[1]=-vec[0]; vec2[2]=0.;//vec2 is the result of cross product of vec with (0,0,1)
3813 double angle=acos(vec[2]/normm);
3814 MCAuto<DataArrayInt> cellIds;
3818 MCAuto<DataArrayDouble> coo=_coords->deepCopy();
3819 double normm2(sqrt(vec2[0]*vec2[0]+vec2[1]*vec2[1]+vec2[2]*vec2[2]));
3820 if(normm2/normm>1e-6)
3821 DataArrayDouble::Rotate3DAlg(origin,vec2,angle,coo->getNumberOfTuples(),coo->getPointer(),coo->getPointer());
3822 MCAuto<MEDCouplingUMesh> mw=clone(false);//false -> shallow copy
3824 mw->getBoundingBox(bbox);
3825 bbox[4]=origin[2]-eps; bbox[5]=origin[2]+eps;
3826 cellIds=mw->getCellsInBoundingBox(bbox,eps);
3830 getBoundingBox(bbox);
3831 bbox[4]=origin[2]-eps; bbox[5]=origin[2]+eps;
3832 cellIds=getCellsInBoundingBox(bbox,eps);
3834 return cellIds.retn();
3838 * This method checks that \a this is a contiguous mesh. The user is expected to call this method on a mesh with meshdim==1.
3839 * If not an exception will thrown. If this is an empty mesh with no cell an exception will be thrown too.
3840 * No consideration of coordinate is done by this method.
3841 * A 1D mesh is said contiguous if : a cell i with nodal connectivity (k,p) the cell i+1 the nodal connectivity should be (p,m)
3842 * If not false is returned. In case that false is returned a call to MEDCoupling::MEDCouplingUMesh::mergeNodes could be usefull.
3844 bool MEDCouplingUMesh::isContiguous1D() const
3846 if(getMeshDimension()!=1)
3847 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::isContiguous1D : this method has a sense only for 1D mesh !");
3848 int nbCells=getNumberOfCells();
3850 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::isContiguous1D : this method has a sense for non empty mesh !");
3851 const int *connI(_nodal_connec_index->begin()),*conn(_nodal_connec->begin());
3852 int ref=conn[connI[0]+2];
3853 for(int i=1;i<nbCells;i++)
3855 if(conn[connI[i]+1]!=ref)
3857 ref=conn[connI[i]+2];
3863 * This method is only callable on mesh with meshdim == 1 containing only SEG2 and spaceDim==3.
3864 * This method projects this on the 3D line defined by (pt,v). This methods first checks that all SEG2 are along v vector.
3865 * \param pt reference point of the line
3866 * \param v normalized director vector of the line
3867 * \param eps max precision before throwing an exception
3868 * \param res output of size this->getNumberOfCells
3870 void MEDCouplingUMesh::project1D(const double *pt, const double *v, double eps, double *res) const
3872 if(getMeshDimension()!=1)
3873 throw INTERP_KERNEL::Exception("Expected a umesh with meshDim == 1 for project1D !");
3874 if(_types.size()!=1 || *(_types.begin())!=INTERP_KERNEL::NORM_SEG2)
3875 throw INTERP_KERNEL::Exception("Expected a umesh with only NORM_SEG2 type of elements for project1D !");
3876 if(getSpaceDimension()!=3)
3877 throw INTERP_KERNEL::Exception("Expected a umesh with spaceDim==3 for project1D !");
3878 MCAuto<MEDCouplingFieldDouble> f=buildDirectionVectorField();
3879 const double *fPtr=f->getArray()->getConstPointer();
3881 for(std::size_t i=0;i<getNumberOfCells();i++)
3883 const double *tmp1=fPtr+3*i;
3884 tmp[0]=tmp1[1]*v[2]-tmp1[2]*v[1];
3885 tmp[1]=tmp1[2]*v[0]-tmp1[0]*v[2];
3886 tmp[2]=tmp1[0]*v[1]-tmp1[1]*v[0];
3887 double n1=INTERP_KERNEL::norm<3>(tmp);
3888 n1/=INTERP_KERNEL::norm<3>(tmp1);
3890 throw INTERP_KERNEL::Exception("UMesh::Projection 1D failed !");
3892 const double *coo=getCoords()->getConstPointer();
3893 for(int i=0;i<getNumberOfNodes();i++)
3895 std::transform(coo+i*3,coo+i*3+3,pt,tmp,std::minus<double>());
3896 std::transform(tmp,tmp+3,v,tmp,std::multiplies<double>());
3897 res[i]=std::accumulate(tmp,tmp+3,0.);
3902 * This method computes the distance from a point \a pt to \a this and the first \a cellId in \a this corresponding to the returned distance.
3903 * \a this is expected to be a mesh so that its space dimension is equal to its
3904 * mesh dimension + 1. Furthermore only mesh dimension 1 and 2 are supported for the moment.
3905 * Distance from \a ptBg to \a ptEnd is expected to be equal to the space dimension. \a this is also expected to be fully defined (connectivity and coordinates).
3907 * WARNING, if there is some orphan nodes in \a this (nodes not fetched by any cells in \a this ( see MEDCouplingUMesh::zipCoords ) ) these nodes will ** not ** been taken
3908 * into account in this method. Only cells and nodes lying on them are considered in the algorithm (even if one of these orphan nodes is closer than returned distance).
3909 * A user that needs to consider orphan nodes should invoke DataArrayDouble::minimalDistanceTo method on the coordinates array of \a this.
3911 * So this method is more accurate (so, more costly) than simply searching for the closest point in \a this.
3912 * If only this information is enough for you simply call \c getCoords()->distanceToTuple on \a this.
3914 * \param [in] ptBg the start pointer (included) of the coordinates of the point
3915 * \param [in] ptEnd the end pointer (not included) of the coordinates of the point
3916 * \param [out] cellId that corresponds to minimal distance. If the closer node is not linked to any cell in \a this -1 is returned.
3917 * \return the positive value of the distance.
3918 * \throw if distance from \a ptBg to \a ptEnd is not equal to the space dimension. An exception is also thrown if mesh dimension of \a this is not equal to space
3920 * \sa DataArrayDouble::distanceToTuple, MEDCouplingUMesh::distanceToPoints
3922 double MEDCouplingUMesh::distanceToPoint(const double *ptBg, const double *ptEnd, int& cellId) const
3924 int meshDim=getMeshDimension(),spaceDim=getSpaceDimension();
3925 if(meshDim!=spaceDim-1)
3926 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::distanceToPoint works only for spaceDim=meshDim+1 !");
3927 if(meshDim!=2 && meshDim!=1)
3928 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::distanceToPoint : only mesh dimension 2 and 1 are implemented !");
3929 checkFullyDefined();
3930 if((int)std::distance(ptBg,ptEnd)!=spaceDim)
3931 { std::ostringstream oss; oss << "MEDCouplingUMesh::distanceToPoint : input point has to have dimension equal to the space dimension of this (" << spaceDim << ") !"; throw INTERP_KERNEL::Exception(oss.str()); }
3932 DataArrayInt *ret1=0;
3933 MCAuto<DataArrayDouble> pts=DataArrayDouble::New(); pts->useArray(ptBg,false,C_DEALLOC,1,spaceDim);
3934 MCAuto<DataArrayDouble> ret0=distanceToPoints(pts,ret1);
3935 MCAuto<DataArrayInt> ret1Safe(ret1);
3936 cellId=*ret1Safe->begin();
3937 return *ret0->begin();
3941 * This method computes the distance from each point of points serie \a pts (stored in a DataArrayDouble in which each tuple represents a point)
3942 * to \a this and the first \a cellId in \a this corresponding to the returned distance.
3943 * WARNING, if there is some orphan nodes in \a this (nodes not fetched by any cells in \a this ( see MEDCouplingUMesh::zipCoords ) ) these nodes will ** not ** been taken
3944 * into account in this method. Only cells and nodes lying on them are considered in the algorithm (even if one of these orphan nodes is closer than returned distance).
3945 * A user that needs to consider orphan nodes should invoke DataArrayDouble::minimalDistanceTo method on the coordinates array of \a this.
3947 * \a this is expected to be a mesh so that its space dimension is equal to its
3948 * mesh dimension + 1. Furthermore only mesh dimension 1 and 2 are supported for the moment.
3949 * Number of components of \a pts is expected to be equal to the space dimension. \a this is also expected to be fully defined (connectivity and coordinates).
3951 * So this method is more accurate (so, more costly) than simply searching for each point in \a pts the closest point in \a this.
3952 * If only this information is enough for you simply call \c getCoords()->distanceToTuple on \a this.
3954 * \param [in] pts the list of points in which each tuple represents a point
3955 * \param [out] cellIds a newly allocated object that tells for each point in \a pts the first cell id in \a this that minimizes the distance.
3956 * \return a newly allocated object to be dealed by the caller that tells for each point in \a pts the distance to \a this.
3957 * \throw if number of components of \a pts is not equal to the space dimension.
3958 * \throw if mesh dimension of \a this is not equal to space dimension - 1.
3959 * \sa DataArrayDouble::distanceToTuple, MEDCouplingUMesh::distanceToPoint
3961 DataArrayDouble *MEDCouplingUMesh::distanceToPoints(const DataArrayDouble *pts, DataArrayInt *& cellIds) const
3964 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::distanceToPoints : input points pointer is NULL !");
3965 pts->checkAllocated();
3966 int meshDim=getMeshDimension(),spaceDim=getSpaceDimension();
3967 if(meshDim!=spaceDim-1)
3968 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::distanceToPoints works only for spaceDim=meshDim+1 !");
3969 if(meshDim!=2 && meshDim!=1)
3970 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::distanceToPoints : only mesh dimension 2 and 1 are implemented !");
3971 if((int)pts->getNumberOfComponents()!=spaceDim)
3973 std::ostringstream oss; oss << "MEDCouplingUMesh::distanceToPoints : input pts DataArrayDouble has " << pts->getNumberOfComponents() << " components whereas it should be equal to " << spaceDim << " (mesh spaceDimension) !";
3974 throw INTERP_KERNEL::Exception(oss.str());
3976 checkFullyDefined();
3977 int nbCells=getNumberOfCells();
3979 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::distanceToPoints : no cells in this !");
3980 int nbOfPts=pts->getNumberOfTuples();
3981 MCAuto<DataArrayDouble> ret0=DataArrayDouble::New(); ret0->alloc(nbOfPts,1);
3982 MCAuto<DataArrayInt> ret1=DataArrayInt::New(); ret1->alloc(nbOfPts,1);
3983 const int *nc=_nodal_connec->begin(),*ncI=_nodal_connec_index->begin(); const double *coords=_coords->begin();
3984 double *ret0Ptr=ret0->getPointer(); int *ret1Ptr=ret1->getPointer(); const double *ptsPtr=pts->begin();
3985 MCAuto<DataArrayDouble> bboxArr(getBoundingBoxForBBTree());
3986 const double *bbox(bboxArr->begin());
3991 BBTreeDst<3> myTree(bbox,0,0,nbCells);
3992 for(int i=0;i<nbOfPts;i++,ret0Ptr++,ret1Ptr++,ptsPtr+=3)
3994 double x=std::numeric_limits<double>::max();
3995 std::vector<int> elems;
3996 myTree.getMinDistanceOfMax(ptsPtr,x);
3997 myTree.getElemsWhoseMinDistanceToPtSmallerThan(ptsPtr,x,elems);
3998 DistanceToPoint3DSurfAlg(ptsPtr,&elems[0],&elems[0]+elems.size(),coords,nc,ncI,*ret0Ptr,*ret1Ptr);
4004 BBTreeDst<2> myTree(bbox,0,0,nbCells);
4005 for(int i=0;i<nbOfPts;i++,ret0Ptr++,ret1Ptr++,ptsPtr+=2)
4007 double x=std::numeric_limits<double>::max();
4008 std::vector<int> elems;
4009 myTree.getMinDistanceOfMax(ptsPtr,x);
4010 myTree.getElemsWhoseMinDistanceToPtSmallerThan(ptsPtr,x,elems);
4011 DistanceToPoint2DCurveAlg(ptsPtr,&elems[0],&elems[0]+elems.size(),coords,nc,ncI,*ret0Ptr,*ret1Ptr);
4016 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::distanceToPoints : only spacedim 2 and 3 supported !");
4018 cellIds=ret1.retn();
4027 * Finds cells in contact with a ball (i.e. a point with precision).
4028 * For speed reasons, the INTERP_KERNEL::NORM_QUAD4, INTERP_KERNEL::NORM_TRI6 and INTERP_KERNEL::NORM_QUAD8 cells are considered as convex cells to detect if a point is IN or OUT.
4029 * If it is not the case, please change their types to INTERP_KERNEL::NORM_POLYGON or INTERP_KERNEL::NORM_QPOLYG before invoking this method.
4031 * \warning This method is suitable if the caller intends to evaluate only one
4032 * point, for more points getCellsContainingPoints() is recommended as it is
4034 * \param [in] pos - array of coordinates of the ball central point.
4035 * \param [in] eps - ball radius.
4036 * \return int - a smallest id of cells being in contact with the ball, -1 in case
4037 * if there are no such cells.
4038 * \throw If the coordinates array is not set.
4039 * \throw If \a this->getMeshDimension() != \a this->getSpaceDimension().
4041 int MEDCouplingUMesh::getCellContainingPoint(const double *pos, double eps) const
4043 std::vector<int> elts;
4044 getCellsContainingPoint(pos,eps,elts);
4047 return elts.front();
4051 * Finds cells in contact with a ball (i.e. a point with precision).
4052 * For speed reasons, the INTERP_KERNEL::NORM_QUAD4, INTERP_KERNEL::NORM_TRI6 and INTERP_KERNEL::NORM_QUAD8 cells are considered as convex cells to detect if a point is IN or OUT.
4053 * If it is not the case, please change their types to INTERP_KERNEL::NORM_POLYGON or INTERP_KERNEL::NORM_QPOLYG before invoking this method.
4054 * \warning This method is suitable if the caller intends to evaluate only one
4055 * point, for more points getCellsContainingPoints() is recommended as it is
4057 * \param [in] pos - array of coordinates of the ball central point.
4058 * \param [in] eps - ball radius.
4059 * \param [out] elts - vector returning ids of the found cells. It is cleared
4060 * before inserting ids.
4061 * \throw If the coordinates array is not set.
4062 * \throw If \a this->getMeshDimension() != \a this->getSpaceDimension().
4064 * \if ENABLE_EXAMPLES
4065 * \ref cpp_mcumesh_getCellsContainingPoint "Here is a C++ example".<br>
4066 * \ref py_mcumesh_getCellsContainingPoint "Here is a Python example".
4069 void MEDCouplingUMesh::getCellsContainingPoint(const double *pos, double eps, std::vector<int>& elts) const
4071 MCAuto<DataArrayInt> eltsUg,eltsIndexUg;
4072 getCellsContainingPoints(pos,1,eps,eltsUg,eltsIndexUg);
4073 elts.clear(); elts.insert(elts.end(),eltsUg->begin(),eltsUg->end());
4077 * Finds cells in contact with several balls (i.e. points with precision).
4078 * This method is an extension of getCellContainingPoint() and
4079 * getCellsContainingPoint() for the case of multiple points.
4080 * For speed reasons, the INTERP_KERNEL::NORM_QUAD4, INTERP_KERNEL::NORM_TRI6 and INTERP_KERNEL::NORM_QUAD8 cells are considered as convex cells to detect if a point is IN or OUT.
4081 * If it is not the case, please change their types to INTERP_KERNEL::NORM_POLYGON or INTERP_KERNEL::NORM_QPOLYG before invoking this method.
4082 * \param [in] pos - an array of coordinates of points in full interlace mode :
4083 * X0,Y0,Z0,X1,Y1,Z1,... Size of the array must be \a
4084 * this->getSpaceDimension() * \a nbOfPoints
4085 * \param [in] nbOfPoints - number of points to locate within \a this mesh.
4086 * \param [in] eps - radius of balls (i.e. the precision).
4087 * \param [out] elts - vector returning ids of found cells.
4088 * \param [out] eltsIndex - an array, of length \a nbOfPoints + 1,
4089 * dividing cell ids in \a elts into groups each referring to one
4090 * point. Its every element (except the last one) is an index pointing to the
4091 * first id of a group of cells. For example cells in contact with the *i*-th
4092 * point are described by following range of indices:
4093 * [ \a eltsIndex[ *i* ], \a eltsIndex[ *i*+1 ] ) and the cell ids are
4094 * \a elts[ \a eltsIndex[ *i* ]], \a elts[ \a eltsIndex[ *i* ] + 1 ], ...
4095 * Number of cells in contact with the *i*-th point is
4096 * \a eltsIndex[ *i*+1 ] - \a eltsIndex[ *i* ].
4097 * \throw If the coordinates array is not set.
4098 * \throw If \a this->getMeshDimension() != \a this->getSpaceDimension().
4100 * \if ENABLE_EXAMPLES
4101 * \ref cpp_mcumesh_getCellsContainingPoints "Here is a C++ example".<br>
4102 * \ref py_mcumesh_getCellsContainingPoints "Here is a Python example".
4105 void MEDCouplingUMesh::getCellsContainingPoints(const double *pos, int nbOfPoints, double eps,
4106 MCAuto<DataArrayInt>& elts, MCAuto<DataArrayInt>& eltsIndex) const
4108 int spaceDim=getSpaceDimension();
4109 int mDim=getMeshDimension();
4114 const double *coords=_coords->getConstPointer();
4115 getCellsContainingPointsAlg<3>(coords,pos,nbOfPoints,eps,elts,eltsIndex);
4122 throw INTERP_KERNEL::Exception("For spaceDim==3 only meshDim==3 implemented for getelementscontainingpoints !");
4124 else if(spaceDim==2)
4128 const double *coords=_coords->getConstPointer();
4129 getCellsContainingPointsAlg<2>(coords,pos,nbOfPoints,eps,elts,eltsIndex);
4132 throw INTERP_KERNEL::Exception("For spaceDim==2 only meshDim==2 implemented for getelementscontainingpoints !");
4134 else if(spaceDim==1)
4138 const double *coords=_coords->getConstPointer();
4139 getCellsContainingPointsAlg<1>(coords,pos,nbOfPoints,eps,elts,eltsIndex);
4142 throw INTERP_KERNEL::Exception("For spaceDim==1 only meshDim==1 implemented for getelementscontainingpoints !");
4145 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getCellsContainingPoints : not managed for mdim not in [1,2,3] !");
4149 * Finds butterfly cells in \a this mesh. A 2D cell is considered to be butterfly if at
4150 * least two its edges intersect each other anywhere except their extremities. An
4151 * INTERP_KERNEL::NORM_NORI3 cell can \b not be butterfly.
4152 * \param [in,out] cells - a vector returning ids of the found cells. It is not
4153 * cleared before filling in.
4154 * \param [in] eps - precision.
4155 * \throw If \a this->getMeshDimension() != 2.
4156 * \throw If \a this->getSpaceDimension() != 2 && \a this->getSpaceDimension() != 3.
4158 void MEDCouplingUMesh::checkButterflyCells(std::vector<int>& cells, double eps) const
4160 const char msg[]="Butterfly detection work only for 2D cells with spaceDim==2 or 3!";
4161 if(getMeshDimension()!=2)
4162 throw INTERP_KERNEL::Exception(msg);
4163 int spaceDim=getSpaceDimension();
4164 if(spaceDim!=2 && spaceDim!=3)
4165 throw INTERP_KERNEL::Exception(msg);
4166 const int *conn=_nodal_connec->getConstPointer();
4167 const int *connI=_nodal_connec_index->getConstPointer();
4168 int nbOfCells=getNumberOfCells();
4169 std::vector<double> cell2DinS2;
4170 for(int i=0;i<nbOfCells;i++)
4172 int offset=connI[i];
4173 int nbOfNodesForCell=connI[i+1]-offset-1;
4174 if(nbOfNodesForCell<=3)
4176 bool isQuad=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[offset]).isQuadratic();
4177 project2DCellOnXY(conn+offset+1,conn+connI[i+1],cell2DinS2);
4178 if(isButterfly2DCell(cell2DinS2,isQuad,eps))
4185 * This method is typically requested to unbutterfly 2D linear cells in \b this.
4187 * This method expects that space dimension is equal to 2 and mesh dimension is equal to 2 too. If it is not the case an INTERP_KERNEL::Exception will be thrown.
4188 * This method works only for linear 2D cells. If there is any of non linear cells (INTERP_KERNEL::NORM_QUAD8 for example) an INTERP_KERNEL::Exception will be thrown too.
4190 * For each 2D linear cell in \b this, this method builds the convex envelop (or the convex hull) of the current cell.
4191 * This convex envelop is computed using Jarvis march algorithm.
4192 * The coordinates and the number of cells of \b this remain unchanged on invocation of this method.
4193 * Only connectivity of some cells could be modified if those cells were not representing a convex envelop. If a cell already equals its convex envelop (regardless orientation)
4194 * its connectivity will remain unchanged. If the computation leads to a modification of nodal connectivity of a cell its geometric type will be modified to INTERP_KERNEL::NORM_POLYGON.
4196 * \return a newly allocated array containing cellIds that have been modified if any. If no cells have been impacted by this method NULL is returned.
4197 * \sa MEDCouplingUMesh::colinearize2D
4199 DataArrayInt *MEDCouplingUMesh::convexEnvelop2D()
4201 if(getMeshDimension()!=2 || getSpaceDimension()!=2)
4202 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convexEnvelop2D works only for meshDim=2 and spaceDim=2 !");
4203 checkFullyDefined();
4204 const double *coords=getCoords()->getConstPointer();
4205 int nbOfCells=getNumberOfCells();
4206 MCAuto<DataArrayInt> nodalConnecIndexOut=DataArrayInt::New();
4207 nodalConnecIndexOut->alloc(nbOfCells+1,1);
4208 MCAuto<DataArrayInt> nodalConnecOut(DataArrayInt::New());
4209 int *workIndexOut=nodalConnecIndexOut->getPointer();
4211 const int *nodalConnecIn=_nodal_connec->getConstPointer();
4212 const int *nodalConnecIndexIn=_nodal_connec_index->getConstPointer();
4213 std::set<INTERP_KERNEL::NormalizedCellType> types;
4214 MCAuto<DataArrayInt> isChanged(DataArrayInt::New());
4215 isChanged->alloc(0,1);
4216 for(int i=0;i<nbOfCells;i++,workIndexOut++)
4218 int pos=nodalConnecOut->getNumberOfTuples();
4219 if(BuildConvexEnvelopOf2DCellJarvis(coords,nodalConnecIn+nodalConnecIndexIn[i],nodalConnecIn+nodalConnecIndexIn[i+1],nodalConnecOut))
4220 isChanged->pushBackSilent(i);
4221 types.insert((INTERP_KERNEL::NormalizedCellType)nodalConnecOut->getIJ(pos,0));
4222 workIndexOut[1]=nodalConnecOut->getNumberOfTuples();
4224 if(isChanged->empty())
4226 setConnectivity(nodalConnecOut,nodalConnecIndexOut,false);
4228 return isChanged.retn();
4232 * This method is \b NOT const because it can modify \a this.
4233 * \a this is expected to be an unstructured mesh with meshDim==2 and spaceDim==3. If not an exception will be thrown.
4234 * \param mesh1D is an unstructured mesh with MeshDim==1 and spaceDim==3. If not an exception will be thrown.
4235 * \param policy specifies the type of extrusion chosen:
4236 * - \b 0 for translation only (most simple): the cells of the 1D mesh represent the vectors along which the 2D mesh
4237 * will be repeated to build each level
4238 * - \b 1 for translation and rotation: the translation is done as above. For each level, an arc of circle is fitted on
4239 * the 3 preceding points of the 1D mesh. The center of the arc is the center of rotation for each level, the rotation is done
4240 * along an axis normal to the plane containing the arc, and finally the angle of rotation is defined by the first two points on the
4242 * \return an unstructured mesh with meshDim==3 and spaceDim==3. The returned mesh has the same coords than \a this.
4244 MEDCouplingUMesh *MEDCouplingUMesh::buildExtrudedMesh(const MEDCouplingUMesh *mesh1D, int policy)
4246 checkFullyDefined();
4247 mesh1D->checkFullyDefined();
4248 if(!mesh1D->isContiguous1D())
4249 throw INTERP_KERNEL::Exception("buildExtrudedMesh : 1D mesh passed in parameter is not contiguous !");
4250 if(getSpaceDimension()!=mesh1D->getSpaceDimension())
4251 throw INTERP_KERNEL::Exception("Invalid call to buildExtrudedMesh this and mesh1D must have same space dimension !");
4252 if((getMeshDimension()!=2 || getSpaceDimension()!=3) && (getMeshDimension()!=1 || getSpaceDimension()!=2))
4253 throw INTERP_KERNEL::Exception("Invalid 'this' for buildExtrudedMesh method : must be (meshDim==2 and spaceDim==3) or (meshDim==1 and spaceDim==2) !");
4254 if(mesh1D->getMeshDimension()!=1)
4255 throw INTERP_KERNEL::Exception("Invalid 'mesh1D' for buildExtrudedMesh method : must be meshDim==1 !");
4257 if(isPresenceOfQuadratic())
4259 if(mesh1D->isFullyQuadratic())
4262 throw INTERP_KERNEL::Exception("Invalid 2D mesh and 1D mesh because 2D mesh has quadratic cells and 1D is not fully quadratic !");
4264 int oldNbOfNodes(getNumberOfNodes());
4265 MCAuto<DataArrayDouble> newCoords;
4270 newCoords=fillExtCoordsUsingTranslation(mesh1D,isQuad);
4275 newCoords=fillExtCoordsUsingTranslAndAutoRotation(mesh1D,isQuad);
4279 throw INTERP_KERNEL::Exception("Not implemented extrusion policy : must be in (0) !");
4281 setCoords(newCoords);
4282 MCAuto<MEDCouplingUMesh> ret(buildExtrudedMeshFromThisLowLev(oldNbOfNodes,isQuad));
4289 * Checks if \a this mesh is constituted by only quadratic cells.
4290 * \return bool - \c true if there are only quadratic cells in \a this mesh.
4291 * \throw If the coordinates array is not set.
4292 * \throw If the nodal connectivity of cells is not defined.
4294 bool MEDCouplingUMesh::isFullyQuadratic() const
4296 checkFullyDefined();
4298 int nbOfCells=getNumberOfCells();
4299 for(int i=0;i<nbOfCells && ret;i++)
4301 INTERP_KERNEL::NormalizedCellType type=getTypeOfCell(i);
4302 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(type);
4303 ret=cm.isQuadratic();
4309 * Checks if \a this mesh includes any quadratic cell.
4310 * \return bool - \c true if there is at least one quadratic cells in \a this mesh.
4311 * \throw If the coordinates array is not set.
4312 * \throw If the nodal connectivity of cells is not defined.
4314 bool MEDCouplingUMesh::isPresenceOfQuadratic() const
4316 checkFullyDefined();
4318 int nbOfCells=getNumberOfCells();
4319 for(int i=0;i<nbOfCells && !ret;i++)
4321 INTERP_KERNEL::NormalizedCellType type=getTypeOfCell(i);
4322 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(type);
4323 ret=cm.isQuadratic();
4329 * Converts all quadratic cells to linear ones. If there are no quadratic cells in \a
4330 * this mesh, it remains unchanged.
4331 * \throw If the coordinates array is not set.
4332 * \throw If the nodal connectivity of cells is not defined.
4334 void MEDCouplingUMesh::convertQuadraticCellsToLinear()
4336 checkFullyDefined();
4337 int nbOfCells(getNumberOfCells());
4339 const int *iciptr=_nodal_connec_index->begin();
4340 for(int i=0;i<nbOfCells;i++)
4342 INTERP_KERNEL::NormalizedCellType type=getTypeOfCell(i);
4343 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(type);
4344 if(cm.isQuadratic())
4346 INTERP_KERNEL::NormalizedCellType typel=cm.getLinearType();
4347 const INTERP_KERNEL::CellModel& cml=INTERP_KERNEL::CellModel::GetCellModel(typel);
4348 if(!cml.isDynamic())
4349 delta+=cm.getNumberOfNodes()-cml.getNumberOfNodes();
4351 delta+=(iciptr[i+1]-iciptr[i]-1)/2;
4356 MCAuto<DataArrayInt> newConn(DataArrayInt::New()),newConnI(DataArrayInt::New());
4357 const int *icptr(_nodal_connec->begin());
4358 newConn->alloc(getNodalConnectivityArrayLen()-delta,1);
4359 newConnI->alloc(nbOfCells+1,1);
4360 int *ocptr(newConn->getPointer()),*ociptr(newConnI->getPointer());
4363 for(int i=0;i<nbOfCells;i++,ociptr++)
4365 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)icptr[iciptr[i]];
4366 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(type);
4367 if(!cm.isQuadratic())
4369 _types.insert(type);
4370 ocptr=std::copy(icptr+iciptr[i],icptr+iciptr[i+1],ocptr);
4371 ociptr[1]=ociptr[0]+iciptr[i+1]-iciptr[i];
4375 INTERP_KERNEL::NormalizedCellType typel=cm.getLinearType();
4376 _types.insert(typel);
4377 const INTERP_KERNEL::CellModel& cml=INTERP_KERNEL::CellModel::GetCellModel(typel);
4378 int newNbOfNodes=cml.getNumberOfNodes();
4380 newNbOfNodes=(iciptr[i+1]-iciptr[i]-1)/2;
4381 *ocptr++=(int)typel;
4382 ocptr=std::copy(icptr+iciptr[i]+1,icptr+iciptr[i]+newNbOfNodes+1,ocptr);
4383 ociptr[1]=ociptr[0]+newNbOfNodes+1;
4386 setConnectivity(newConn,newConnI,false);
4390 * This method converts all linear cell in \a this to quadratic one.
4391 * Contrary to MEDCouplingUMesh::convertQuadraticCellsToLinear method, here it is needed to specify the target
4392 * type of cells expected. For example INTERP_KERNEL::NORM_TRI3 can be converted to INTERP_KERNEL::NORM_TRI6 if \a conversionType is equal to 0 (the default)
4393 * or to INTERP_KERNEL::NORM_TRI7 if \a conversionType is equal to 1. All non linear cells and polyhedron in \a this are let untouched.
4394 * Contrary to MEDCouplingUMesh::convertQuadraticCellsToLinear method, the coordinates in \a this can be become bigger. All created nodes will be put at the
4395 * end of the existing coordinates.
4397 * \param [in] conversionType specifies the type of conversion expected. Only 0 (default) and 1 are supported presently. 0 those that creates the 'most' simple
4398 * corresponding quadratic cells. 1 is those creating the 'most' complex.
4399 * \return a newly created DataArrayInt instance that the caller should deal with containing cell ids of converted cells.
4401 * \throw if \a this is not fully defined. It throws too if \a conversionType is not in [0,1].
4403 * \sa MEDCouplingUMesh::convertQuadraticCellsToLinear
4405 DataArrayInt *MEDCouplingUMesh::convertLinearCellsToQuadratic(int conversionType)
4407 DataArrayInt *conn=0,*connI=0;
4408 DataArrayDouble *coords=0;
4409 std::set<INTERP_KERNEL::NormalizedCellType> types;
4410 checkFullyDefined();
4411 MCAuto<DataArrayInt> ret,connSafe,connISafe;
4412 MCAuto<DataArrayDouble> coordsSafe;
4413 int meshDim=getMeshDimension();
4414 switch(conversionType)
4420 ret=convertLinearCellsToQuadratic1D0(conn,connI,coords,types);
4421 connSafe=conn; connISafe=connI; coordsSafe=coords;
4424 ret=convertLinearCellsToQuadratic2D0(conn,connI,coords,types);
4425 connSafe=conn; connISafe=connI; coordsSafe=coords;
4428 ret=convertLinearCellsToQuadratic3D0(conn,connI,coords,types);
4429 connSafe=conn; connISafe=connI; coordsSafe=coords;
4432 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertLinearCellsToQuadratic : conversion of type 0 mesh dimensions available are [1,2,3] !");
4440 ret=convertLinearCellsToQuadratic1D0(conn,connI,coords,types);//it is not a bug. In 1D policy 0 and 1 are equals
4441 connSafe=conn; connISafe=connI; coordsSafe=coords;
4444 ret=convertLinearCellsToQuadratic2D1(conn,connI,coords,types);
4445 connSafe=conn; connISafe=connI; coordsSafe=coords;
4448 ret=convertLinearCellsToQuadratic3D1(conn,connI,coords,types);
4449 connSafe=conn; connISafe=connI; coordsSafe=coords;
4452 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertLinearCellsToQuadratic : conversion of type 1 mesh dimensions available are [1,2,3] !");
4457 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertLinearCellsToQuadratic : conversion type available are 0 (default, the simplest) and 1 (the most complex) !");
4459 setConnectivity(connSafe,connISafe,false);
4461 setCoords(coordsSafe);
4466 * Tessellates \a this 2D mesh by dividing not straight edges of quadratic faces,
4467 * so that the number of cells remains the same. Quadratic faces are converted to
4468 * polygons. This method works only for 2D meshes in
4469 * 2D space. If no cells are quadratic (INTERP_KERNEL::NORM_QUAD8,
4470 * INTERP_KERNEL::NORM_TRI6, INTERP_KERNEL::NORM_QPOLYG ), \a this mesh remains unchanged.
4471 * \warning This method can lead to a huge amount of nodes if \a eps is very low.
4472 * \param [in] eps - specifies the maximal angle (in radians) between 2 sub-edges of
4473 * a polylinized edge constituting the input polygon.
4474 * \throw If the coordinates array is not set.
4475 * \throw If the nodal connectivity of cells is not defined.
4476 * \throw If \a this->getMeshDimension() != 2.
4477 * \throw If \a this->getSpaceDimension() != 2.
4479 void MEDCouplingUMesh::tessellate2D(double eps)
4481 int meshDim(getMeshDimension()),spaceDim(getSpaceDimension());
4483 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::tessellate2D : works only with space dimension equal to 2 !");
4487 return tessellate2DCurveInternal(eps);
4489 return tessellate2DInternal(eps);
4491 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::tessellate2D : mesh dimension must be in [1,2] !");
4495 * Tessellates \a this 1D mesh in 2D space by dividing not straight quadratic edges.
4496 * \warning This method can lead to a huge amount of nodes if \a eps is very low.
4497 * \param [in] eps - specifies the maximal angle (in radian) between 2 sub-edges of
4498 * a sub-divided edge.
4499 * \throw If the coordinates array is not set.
4500 * \throw If the nodal connectivity of cells is not defined.
4501 * \throw If \a this->getMeshDimension() != 1.
4502 * \throw If \a this->getSpaceDimension() != 2.
4507 * This method only works if \a this has spaceDimension equal to 2 and meshDimension also equal to 2.
4508 * This method allows to modify connectivity of cells in \a this that shares some edges in \a edgeIdsToBeSplit.
4509 * The nodes to be added in those 2D cells are defined by the pair of \a nodeIdsToAdd and \a nodeIdsIndexToAdd.
4510 * Length of \a nodeIdsIndexToAdd is expected to equal to length of \a edgeIdsToBeSplit + 1.
4511 * The node ids in \a nodeIdsToAdd should be valid. Those nodes have to be sorted exactly following exactly the direction of the edge.
4512 * This method can be seen as the opposite method of colinearize2D.
4513 * This method can be lead to create some new nodes if quadratic polygon cells have to be split. In this case the added nodes will be put at the end
4514 * to avoid to modify the numbering of existing nodes.
4516 * \param [in] nodeIdsToAdd - the list of node ids to be added (\a nodeIdsIndexToAdd array allows to walk on this array)
4517 * \param [in] nodeIdsIndexToAdd - the entry point of \a nodeIdsToAdd to point to the corresponding nodes to be added.
4518 * \param [in] mesh1Desc - 1st output of buildDescendingConnectivity2 on \a this.
4519 * \param [in] desc - 2nd output of buildDescendingConnectivity2 on \a this.
4520 * \param [in] descI - 3rd output of buildDescendingConnectivity2 on \a this.
4521 * \param [in] revDesc - 4th output of buildDescendingConnectivity2 on \a this.
4522 * \param [in] revDescI - 5th output of buildDescendingConnectivity2 on \a this.
4524 * \sa buildDescendingConnectivity2
4526 void MEDCouplingUMesh::splitSomeEdgesOf2DMesh(const DataArrayInt *nodeIdsToAdd, const DataArrayInt *nodeIdsIndexToAdd, const DataArrayInt *edgeIdsToBeSplit,
4527 const MEDCouplingUMesh *mesh1Desc, const DataArrayInt *desc, const DataArrayInt *descI, const DataArrayInt *revDesc, const DataArrayInt *revDescI)
4529 if(!nodeIdsToAdd || !nodeIdsIndexToAdd || !edgeIdsToBeSplit || !mesh1Desc || !desc || !descI || !revDesc || !revDescI)
4530 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::splitSomeEdgesOf2DMesh : input pointers must be not NULL !");
4531 nodeIdsToAdd->checkAllocated(); nodeIdsIndexToAdd->checkAllocated(); edgeIdsToBeSplit->checkAllocated(); desc->checkAllocated(); descI->checkAllocated(); revDesc->checkAllocated(); revDescI->checkAllocated();
4532 if(getSpaceDimension()!=2 || getMeshDimension()!=2)
4533 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::splitSomeEdgesOf2DMesh : this must have spacedim=meshdim=2 !");
4534 if(mesh1Desc->getSpaceDimension()!=2 || mesh1Desc->getMeshDimension()!=1)
4535 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::splitSomeEdgesOf2DMesh : mesh1Desc must be the explosion of this with spaceDim=2 and meshDim = 1 !");
4536 //DataArrayInt *out0(0),*outi0(0);
4537 //MEDCouplingUMesh::ExtractFromIndexedArrays(idsInDesc2DToBeRefined->begin(),idsInDesc2DToBeRefined->end(),dd3,dd4,out0,outi0);
4538 //MCAuto<DataArrayInt> out0s(out0),outi0s(outi0);
4539 //out0s=out0s->buildUnique(); out0s->sort(true);
4545 * Divides every cell of \a this mesh into simplices (triangles in 2D and tetrahedra in 3D).
4546 * In addition, returns an array mapping new cells to old ones. <br>
4547 * This method typically increases the number of cells in \a this mesh
4548 * but the number of nodes remains \b unchanged.
4549 * That's why the 3D splitting policies
4550 * INTERP_KERNEL::GENERAL_24 and INTERP_KERNEL::GENERAL_48 are not available here.
4551 * \param [in] policy - specifies a pattern used for splitting.
4552 * The semantic of \a policy is:
4553 * - 0 - to split QUAD4 by cutting it along 0-2 diagonal (for 2D mesh only).
4554 * - 1 - to split QUAD4 by cutting it along 1-3 diagonal (for 2D mesh only).
4555 * - INTERP_KERNEL::PLANAR_FACE_5 - to split HEXA8 into 5 TETRA4 (for 3D mesh only - see INTERP_KERNEL::SplittingPolicy for an image).
4556 * - INTERP_KERNEL::PLANAR_FACE_6 - to split HEXA8 into 6 TETRA4 (for 3D mesh only - see INTERP_KERNEL::SplittingPolicy for an image).
4559 * \return DataArrayInt * - a new instance of DataArrayInt holding, for each new cell,
4560 * an id of old cell producing it. The caller is to delete this array using
4561 * decrRef() as it is no more needed.
4563 * \throw If \a policy is 0 or 1 and \a this->getMeshDimension() != 2.
4564 * \throw If \a policy is INTERP_KERNEL::PLANAR_FACE_5 or INTERP_KERNEL::PLANAR_FACE_6
4565 * and \a this->getMeshDimension() != 3.
4566 * \throw If \a policy is not one of the four discussed above.
4567 * \throw If the nodal connectivity of cells is not defined.
4568 * \sa MEDCouplingUMesh::tetrahedrize, MEDCoupling1SGTUMesh::sortHexa8EachOther
4570 DataArrayInt *MEDCouplingUMesh::simplexize(int policy)
4575 return simplexizePol0();
4577 return simplexizePol1();
4578 case (int) INTERP_KERNEL::PLANAR_FACE_5:
4579 return simplexizePlanarFace5();
4580 case (int) INTERP_KERNEL::PLANAR_FACE_6:
4581 return simplexizePlanarFace6();
4583 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::simplexize : unrecognized policy ! Must be :\n - 0 or 1 (only available for meshdim=2) \n - PLANAR_FACE_5, PLANAR_FACE_6 (only for meshdim=3)");
4588 * Checks if \a this mesh is constituted by simplex cells only. Simplex cells are:
4589 * - 1D: INTERP_KERNEL::NORM_SEG2
4590 * - 2D: INTERP_KERNEL::NORM_TRI3
4591 * - 3D: INTERP_KERNEL::NORM_TETRA4.
4593 * This method is useful for users that need to use P1 field services as
4594 * MEDCouplingFieldDouble::getValueOn(), MEDCouplingField::buildMeasureField() etc.
4595 * All these methods need mesh support containing only simplex cells.
4596 * \return bool - \c true if there are only simplex cells in \a this mesh.
4597 * \throw If the coordinates array is not set.
4598 * \throw If the nodal connectivity of cells is not defined.
4599 * \throw If \a this->getMeshDimension() < 1.
4601 bool MEDCouplingUMesh::areOnlySimplexCells() const
4603 checkFullyDefined();
4604 int mdim=getMeshDimension();
4605 if(mdim<1 || mdim>3)
4606 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::areOnlySimplexCells : only available with meshes having a meshdim 1, 2 or 3 !");
4607 int nbCells=getNumberOfCells();
4608 const int *conn=_nodal_connec->begin();
4609 const int *connI=_nodal_connec_index->begin();
4610 for(int i=0;i<nbCells;i++)
4612 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[connI[i]]);
4622 * Converts degenerated 2D or 3D linear cells of \a this mesh into cells of simpler
4623 * type. For example an INTERP_KERNEL::NORM_QUAD4 cell having only three unique nodes in
4624 * its connectivity is transformed into an INTERP_KERNEL::NORM_TRI3 cell. This method
4625 * does \b not perform geometrical checks and checks only nodal connectivity of cells,
4626 * so it can be useful to call mergeNodes() before calling this method.
4627 * \throw If \a this->getMeshDimension() <= 1.
4628 * \throw If the coordinates array is not set.
4629 * \throw If the nodal connectivity of cells is not defined.
4631 void MEDCouplingUMesh::convertDegeneratedCells()
4633 checkFullyDefined();
4634 if(getMeshDimension()<=1)
4635 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertDegeneratedCells works on umeshes with meshdim equals to 2 or 3 !");
4636 int nbOfCells=getNumberOfCells();
4639 int initMeshLgth=getNodalConnectivityArrayLen();
4640 int *conn=_nodal_connec->getPointer();
4641 int *index=_nodal_connec_index->getPointer();
4645 for(int i=0;i<nbOfCells;i++)
4647 lgthOfCurCell=index[i+1]-posOfCurCell;
4648 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)conn[posOfCurCell];
4650 INTERP_KERNEL::NormalizedCellType newType=INTERP_KERNEL::CellSimplify::simplifyDegeneratedCell(type,conn+posOfCurCell+1,lgthOfCurCell-1,
4651 conn+newPos+1,newLgth);
4652 conn[newPos]=newType;
4654 posOfCurCell=index[i+1];
4657 if(newPos!=initMeshLgth)
4658 _nodal_connec->reAlloc(newPos);
4663 * Finds incorrectly oriented cells of this 2D mesh in 3D space.
4664 * A cell is considered to be oriented correctly if an angle between its
4665 * normal vector and a given vector is less than \c PI / \c 2.
4666 * \param [in] vec - 3 components of the vector specifying the correct orientation of
4668 * \param [in] polyOnly - if \c true, only polygons are checked, else, all cells are
4670 * \param [in,out] cells - a vector returning ids of incorrectly oriented cells. It
4671 * is not cleared before filling in.
4672 * \throw If \a this->getMeshDimension() != 2.
4673 * \throw If \a this->getSpaceDimension() != 3.
4675 * \if ENABLE_EXAMPLES
4676 * \ref cpp_mcumesh_are2DCellsNotCorrectlyOriented "Here is a C++ example".<br>
4677 * \ref py_mcumesh_are2DCellsNotCorrectlyOriented "Here is a Python example".
4680 void MEDCouplingUMesh::are2DCellsNotCorrectlyOriented(const double *vec, bool polyOnly, std::vector<int>& cells) const
4682 if(getMeshDimension()!=2 || getSpaceDimension()!=3)
4683 throw INTERP_KERNEL::Exception("Invalid mesh to apply are2DCellsNotCorrectlyOriented on it : must be meshDim==2 and spaceDim==3 !");
4684 int nbOfCells=getNumberOfCells();
4685 const int *conn=_nodal_connec->begin();
4686 const int *connI=_nodal_connec_index->begin();
4687 const double *coordsPtr=_coords->begin();
4688 for(int i=0;i<nbOfCells;i++)
4690 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)conn[connI[i]];
4691 if(!polyOnly || (type==INTERP_KERNEL::NORM_POLYGON || type==INTERP_KERNEL::NORM_QPOLYG))
4693 bool isQuadratic=INTERP_KERNEL::CellModel::GetCellModel(type).isQuadratic();
4694 if(!IsPolygonWellOriented(isQuadratic,vec,conn+connI[i]+1,conn+connI[i+1],coordsPtr))
4701 * Reverse connectivity of 2D cells whose orientation is not correct. A cell is
4702 * considered to be oriented correctly if an angle between its normal vector and a
4703 * given vector is less than \c PI / \c 2.
4704 * \param [in] vec - 3 components of the vector specifying the correct orientation of
4706 * \param [in] polyOnly - if \c true, only polygons are checked, else, all cells are
4708 * \throw If \a this->getMeshDimension() != 2.
4709 * \throw If \a this->getSpaceDimension() != 3.
4711 * \if ENABLE_EXAMPLES
4712 * \ref cpp_mcumesh_are2DCellsNotCorrectlyOriented "Here is a C++ example".<br>
4713 * \ref py_mcumesh_are2DCellsNotCorrectlyOriented "Here is a Python example".
4716 * \sa changeOrientationOfCells
4718 void MEDCouplingUMesh::orientCorrectly2DCells(const double *vec, bool polyOnly)
4720 if(getMeshDimension()!=2 || getSpaceDimension()!=3)
4721 throw INTERP_KERNEL::Exception("Invalid mesh to apply orientCorrectly2DCells on it : must be meshDim==2 and spaceDim==3 !");
4722 int nbOfCells(getNumberOfCells()),*conn(_nodal_connec->getPointer());
4723 const int *connI(_nodal_connec_index->begin());
4724 const double *coordsPtr(_coords->begin());
4725 bool isModified(false);
4726 for(int i=0;i<nbOfCells;i++)
4728 INTERP_KERNEL::NormalizedCellType type((INTERP_KERNEL::NormalizedCellType)conn[connI[i]]);
4729 if(!polyOnly || (type==INTERP_KERNEL::NORM_POLYGON || type==INTERP_KERNEL::NORM_QPOLYG))
4731 const INTERP_KERNEL::CellModel& cm(INTERP_KERNEL::CellModel::GetCellModel(type));
4732 bool isQuadratic(cm.isQuadratic());
4733 if(!IsPolygonWellOriented(isQuadratic,vec,conn+connI[i]+1,conn+connI[i+1],coordsPtr))
4736 cm.changeOrientationOf2D(conn+connI[i]+1,(unsigned int)(connI[i+1]-connI[i]-1));
4741 _nodal_connec->declareAsNew();
4746 * This method change the orientation of cells in \a this without any consideration of coordinates. Only connectivity is impacted.
4748 * \sa orientCorrectly2DCells
4750 void MEDCouplingUMesh::changeOrientationOfCells()
4752 int mdim(getMeshDimension());
4753 if(mdim!=2 && mdim!=1)
4754 throw INTERP_KERNEL::Exception("Invalid mesh to apply changeOrientationOfCells on it : must be meshDim==2 or meshDim==1 !");
4755 int nbOfCells(getNumberOfCells()),*conn(_nodal_connec->getPointer());
4756 const int *connI(_nodal_connec_index->begin());
4759 for(int i=0;i<nbOfCells;i++)
4761 INTERP_KERNEL::NormalizedCellType type((INTERP_KERNEL::NormalizedCellType)conn[connI[i]]);
4762 const INTERP_KERNEL::CellModel& cm(INTERP_KERNEL::CellModel::GetCellModel(type));
4763 cm.changeOrientationOf2D(conn+connI[i]+1,(unsigned int)(connI[i+1]-connI[i]-1));
4768 for(int i=0;i<nbOfCells;i++)
4770 INTERP_KERNEL::NormalizedCellType type((INTERP_KERNEL::NormalizedCellType)conn[connI[i]]);
4771 const INTERP_KERNEL::CellModel& cm(INTERP_KERNEL::CellModel::GetCellModel(type));
4772 cm.changeOrientationOf1D(conn+connI[i]+1,(unsigned int)(connI[i+1]-connI[i]-1));
4778 * Finds incorrectly oriented polyhedral cells, i.e. polyhedrons having correctly
4779 * oriented facets. The normal vector of the facet should point out of the cell.
4780 * \param [in,out] cells - a vector returning ids of incorrectly oriented cells. It
4781 * is not cleared before filling in.
4782 * \throw If \a this->getMeshDimension() != 3.
4783 * \throw If \a this->getSpaceDimension() != 3.
4784 * \throw If the coordinates array is not set.
4785 * \throw If the nodal connectivity of cells is not defined.
4787 * \if ENABLE_EXAMPLES
4788 * \ref cpp_mcumesh_arePolyhedronsNotCorrectlyOriented "Here is a C++ example".<br>
4789 * \ref py_mcumesh_arePolyhedronsNotCorrectlyOriented "Here is a Python example".
4792 void MEDCouplingUMesh::arePolyhedronsNotCorrectlyOriented(std::vector<int>& cells) const
4794 if(getMeshDimension()!=3 || getSpaceDimension()!=3)
4795 throw INTERP_KERNEL::Exception("Invalid mesh to apply arePolyhedronsNotCorrectlyOriented on it : must be meshDim==3 and spaceDim==3 !");
4796 int nbOfCells=getNumberOfCells();
4797 const int *conn=_nodal_connec->begin();
4798 const int *connI=_nodal_connec_index->begin();
4799 const double *coordsPtr=_coords->begin();
4800 for(int i=0;i<nbOfCells;i++)
4802 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)conn[connI[i]];
4803 if(type==INTERP_KERNEL::NORM_POLYHED)
4805 if(!IsPolyhedronWellOriented(conn+connI[i]+1,conn+connI[i+1],coordsPtr))
4812 * Tries to fix connectivity of polyhedra, so that normal vector of all facets to point
4814 * \throw If \a this->getMeshDimension() != 3.
4815 * \throw If \a this->getSpaceDimension() != 3.
4816 * \throw If the coordinates array is not set.
4817 * \throw If the nodal connectivity of cells is not defined.
4818 * \throw If the reparation fails.
4820 * \if ENABLE_EXAMPLES
4821 * \ref cpp_mcumesh_arePolyhedronsNotCorrectlyOriented "Here is a C++ example".<br>
4822 * \ref py_mcumesh_arePolyhedronsNotCorrectlyOriented "Here is a Python example".
4824 * \sa MEDCouplingUMesh::findAndCorrectBadOriented3DCells
4826 void MEDCouplingUMesh::orientCorrectlyPolyhedrons()
4828 if(getMeshDimension()!=3 || getSpaceDimension()!=3)
4829 throw INTERP_KERNEL::Exception("Invalid mesh to apply orientCorrectlyPolyhedrons on it : must be meshDim==3 and spaceDim==3 !");
4830 int nbOfCells=getNumberOfCells();
4831 int *conn=_nodal_connec->getPointer();
4832 const int *connI=_nodal_connec_index->begin();
4833 const double *coordsPtr=_coords->begin();
4834 for(int i=0;i<nbOfCells;i++)
4836 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)conn[connI[i]];
4837 if(type==INTERP_KERNEL::NORM_POLYHED)
4841 if(!IsPolyhedronWellOriented(conn+connI[i]+1,conn+connI[i+1],coordsPtr))
4842 TryToCorrectPolyhedronOrientation(conn+connI[i]+1,conn+connI[i+1],coordsPtr);
4844 catch(INTERP_KERNEL::Exception& e)
4846 std::ostringstream oss; oss << "Something wrong in polyhedron #" << i << " : " << e.what();
4847 throw INTERP_KERNEL::Exception(oss.str());
4855 * This method invert orientation of all cells in \a this.
4856 * After calling this method the absolute value of measure of cells in \a this are the same than before calling.
4857 * This method only operates on the connectivity so coordinates are not touched at all.
4859 void MEDCouplingUMesh::invertOrientationOfAllCells()
4861 checkConnectivityFullyDefined();
4862 std::set<INTERP_KERNEL::NormalizedCellType> gts(getAllGeoTypes());
4863 int *conn(_nodal_connec->getPointer());
4864 const int *conni(_nodal_connec_index->begin());
4865 for(std::set<INTERP_KERNEL::NormalizedCellType>::const_iterator gt=gts.begin();gt!=gts.end();gt++)
4867 INTERP_KERNEL::AutoCppPtr<INTERP_KERNEL::OrientationInverter> oi(INTERP_KERNEL::OrientationInverter::BuildInstanceFrom(*gt));
4868 MCAuto<DataArrayInt> cwt(giveCellsWithType(*gt));
4869 for(const int *it=cwt->begin();it!=cwt->end();it++)
4870 oi->operate(conn+conni[*it]+1,conn+conni[*it+1]);
4876 * Finds and fixes incorrectly oriented linear extruded volumes (INTERP_KERNEL::NORM_HEXA8,
4877 * INTERP_KERNEL::NORM_PENTA6, INTERP_KERNEL::NORM_HEXGP12 etc) to respect the MED convention
4878 * according to which the first facet of the cell should be oriented to have the normal vector
4879 * pointing out of cell.
4880 * \return DataArrayInt * - a new instance of DataArrayInt holding ids of fixed
4881 * cells. The caller is to delete this array using decrRef() as it is no more
4883 * \throw If \a this->getMeshDimension() != 3.
4884 * \throw If \a this->getSpaceDimension() != 3.
4885 * \throw If the coordinates array is not set.
4886 * \throw If the nodal connectivity of cells is not defined.
4888 * \if ENABLE_EXAMPLES
4889 * \ref cpp_mcumesh_findAndCorrectBadOriented3DExtrudedCells "Here is a C++ example".<br>
4890 * \ref py_mcumesh_findAndCorrectBadOriented3DExtrudedCells "Here is a Python example".
4892 * \sa MEDCouplingUMesh::findAndCorrectBadOriented3DCells
4894 DataArrayInt *MEDCouplingUMesh::findAndCorrectBadOriented3DExtrudedCells()
4896 const char msg[]="check3DCellsWellOriented detection works only for 3D cells !";
4897 if(getMeshDimension()!=3)
4898 throw INTERP_KERNEL::Exception(msg);
4899 int spaceDim=getSpaceDimension();
4901 throw INTERP_KERNEL::Exception(msg);
4903 int nbOfCells=getNumberOfCells();
4904 int *conn=_nodal_connec->getPointer();
4905 const int *connI=_nodal_connec_index->begin();
4906 const double *coo=getCoords()->begin();
4907 MCAuto<DataArrayInt> cells(DataArrayInt::New()); cells->alloc(0,1);
4908 for(int i=0;i<nbOfCells;i++)
4910 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[connI[i]]);
4911 if(cm.isExtruded() && !cm.isDynamic() && !cm.isQuadratic())
4913 if(!Is3DExtrudedStaticCellWellOriented(conn+connI[i]+1,conn+connI[i+1],coo))
4915 CorrectExtrudedStaticCell(conn+connI[i]+1,conn+connI[i+1]);
4916 cells->pushBackSilent(i);
4920 return cells.retn();
4924 * This method is a faster method to correct orientation of all 3D cells in \a this.
4925 * This method works only if \a this is a 3D mesh, that is to say a mesh with mesh dimension 3 and a space dimension 3.
4926 * This method makes the hypothesis that \a this a coherent that is to say MEDCouplingUMesh::checkConsistency should throw no exception.
4928 * \return a newly allocated int array with one components containing cell ids renumbered to fit the convention of MED (MED file and MEDCoupling)
4929 * \sa MEDCouplingUMesh::orientCorrectlyPolyhedrons,
4931 DataArrayInt *MEDCouplingUMesh::findAndCorrectBadOriented3DCells()
4933 if(getMeshDimension()!=3 || getSpaceDimension()!=3)
4934 throw INTERP_KERNEL::Exception("Invalid mesh to apply findAndCorrectBadOriented3DCells on it : must be meshDim==3 and spaceDim==3 !");
4935 int nbOfCells=getNumberOfCells();
4936 int *conn=_nodal_connec->getPointer();
4937 const int *connI=_nodal_connec_index->begin();
4938 const double *coordsPtr=_coords->begin();
4939 MCAuto<DataArrayInt> ret=DataArrayInt::New(); ret->alloc(0,1);
4940 for(int i=0;i<nbOfCells;i++)
4942 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)conn[connI[i]];
4945 case INTERP_KERNEL::NORM_TETRA4:
4947 if(!IsTetra4WellOriented(conn+connI[i]+1,conn+connI[i+1],coordsPtr))
4949 std::swap(*(conn+connI[i]+2),*(conn+connI[i]+3));
4950 ret->pushBackSilent(i);
4954 case INTERP_KERNEL::NORM_PYRA5:
4956 if(!IsPyra5WellOriented(conn+connI[i]+1,conn+connI[i+1],coordsPtr))
4958 std::swap(*(conn+connI[i]+2),*(conn+connI[i]+4));
4959 ret->pushBackSilent(i);
4963 case INTERP_KERNEL::NORM_PENTA6:
4964 case INTERP_KERNEL::NORM_HEXA8:
4965 case INTERP_KERNEL::NORM_HEXGP12:
4967 if(!Is3DExtrudedStaticCellWellOriented(conn+connI[i]+1,conn+connI[i+1],coordsPtr))
4969 CorrectExtrudedStaticCell(conn+connI[i]+1,conn+connI[i+1]);
4970 ret->pushBackSilent(i);
4974 case INTERP_KERNEL::NORM_POLYHED:
4976 if(!IsPolyhedronWellOriented(conn+connI[i]+1,conn+connI[i+1],coordsPtr))
4978 TryToCorrectPolyhedronOrientation(conn+connI[i]+1,conn+connI[i+1],coordsPtr);
4979 ret->pushBackSilent(i);
4984 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::orientCorrectly3DCells : Your mesh contains type of cell not supported yet ! send mail to anthony.geay@cea.fr to add it !");
4992 * This method has a sense for meshes with spaceDim==3 and meshDim==2.
4993 * If it is not the case an exception will be thrown.
4994 * This method is fast because the first cell of \a this is used to compute the plane.
4995 * \param vec output of size at least 3 used to store the normal vector (with norm equal to Area ) of searched plane.
4996 * \param pos output of size at least 3 used to store a point owned of searched plane.
4998 void MEDCouplingUMesh::getFastAveragePlaneOfThis(double *vec, double *pos) const
5000 if(getMeshDimension()!=2 || getSpaceDimension()!=3)
5001 throw INTERP_KERNEL::Exception("Invalid mesh to apply getFastAveragePlaneOfThis on it : must be meshDim==2 and spaceDim==3 !");
5002 const int *conn=_nodal_connec->begin();
5003 const int *connI=_nodal_connec_index->begin();
5004 const double *coordsPtr=_coords->begin();
5005 INTERP_KERNEL::areaVectorOfPolygon<int,INTERP_KERNEL::ALL_C_MODE>(conn+1,connI[1]-connI[0]-1,coordsPtr,vec);
5006 std::copy(coordsPtr+3*conn[1],coordsPtr+3*conn[1]+3,pos);
5010 * Creates a new MEDCouplingFieldDouble holding Edge Ratio values of all
5011 * cells. Currently cells of the following types are treated:
5012 * INTERP_KERNEL::NORM_TRI3, INTERP_KERNEL::NORM_QUAD4 and INTERP_KERNEL::NORM_TETRA4.
5013 * For a cell of other type an exception is thrown.
5014 * Space dimension of a 2D mesh can be either 2 or 3.
5015 * The Edge Ratio of a cell \f$t\f$ is:
5016 * \f$\frac{|t|_\infty}{|t|_0}\f$,
5017 * where \f$|t|_\infty\f$ and \f$|t|_0\f$ respectively denote the greatest and
5018 * the smallest edge lengths of \f$t\f$.
5019 * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
5020 * cells and one time, lying on \a this mesh. The caller is to delete this
5021 * field using decrRef() as it is no more needed.
5022 * \throw If the coordinates array is not set.
5023 * \throw If \a this mesh contains elements of dimension different from the mesh dimension.
5024 * \throw If the connectivity data array has more than one component.
5025 * \throw If the connectivity data array has a named component.
5026 * \throw If the connectivity index data array has more than one component.
5027 * \throw If the connectivity index data array has a named component.
5028 * \throw If \a this->getMeshDimension() is neither 2 nor 3.
5029 * \throw If \a this->getSpaceDimension() is neither 2 nor 3.
5030 * \throw If \a this mesh includes cells of type different from the ones enumerated above.
5032 MEDCouplingFieldDouble *MEDCouplingUMesh::getEdgeRatioField() const
5034 checkConsistencyLight();
5035 int spaceDim=getSpaceDimension();
5036 int meshDim=getMeshDimension();
5037 if(spaceDim!=2 && spaceDim!=3)
5038 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getEdgeRatioField : SpaceDimension must be equal to 2 or 3 !");
5039 if(meshDim!=2 && meshDim!=3)
5040 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getEdgeRatioField : MeshDimension must be equal to 2 or 3 !");
5041 MCAuto<MEDCouplingFieldDouble> ret=MEDCouplingFieldDouble::New(ON_CELLS,ONE_TIME);
5043 int nbOfCells=getNumberOfCells();
5044 MCAuto<DataArrayDouble> arr=DataArrayDouble::New();
5045 arr->alloc(nbOfCells,1);
5046 double *pt=arr->getPointer();
5047 ret->setArray(arr);//In case of throw to avoid mem leaks arr will be used after decrRef.
5048 const int *conn=_nodal_connec->begin();
5049 const int *connI=_nodal_connec_index->begin();
5050 const double *coo=_coords->begin();
5052 for(int i=0;i<nbOfCells;i++,pt++)
5054 INTERP_KERNEL::NormalizedCellType t=(INTERP_KERNEL::NormalizedCellType)*conn;
5057 case INTERP_KERNEL::NORM_TRI3:
5059 FillInCompact3DMode(spaceDim,3,conn+1,coo,tmp);
5060 *pt=INTERP_KERNEL::triEdgeRatio(tmp);
5063 case INTERP_KERNEL::NORM_QUAD4:
5065 FillInCompact3DMode(spaceDim,4,conn+1,coo,tmp);
5066 *pt=INTERP_KERNEL::quadEdgeRatio(tmp);
5069 case INTERP_KERNEL::NORM_TETRA4:
5071 FillInCompact3DMode(spaceDim,4,conn+1,coo,tmp);
5072 *pt=INTERP_KERNEL::tetraEdgeRatio(tmp);
5076 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getEdgeRatioField : A cell with not manged type (NORM_TRI3, NORM_QUAD4 and NORM_TETRA4) has been detected !");
5078 conn+=connI[i+1]-connI[i];
5080 ret->setName("EdgeRatio");
5081 ret->synchronizeTimeWithSupport();
5086 * Creates a new MEDCouplingFieldDouble holding Aspect Ratio values of all
5087 * cells. Currently cells of the following types are treated:
5088 * INTERP_KERNEL::NORM_TRI3, INTERP_KERNEL::NORM_QUAD4 and INTERP_KERNEL::NORM_TETRA4.
5089 * For a cell of other type an exception is thrown.
5090 * Space dimension of a 2D mesh can be either 2 or 3.
5091 * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
5092 * cells and one time, lying on \a this mesh. The caller is to delete this
5093 * field using decrRef() as it is no more needed.
5094 * \throw If the coordinates array is not set.
5095 * \throw If \a this mesh contains elements of dimension different from the mesh dimension.
5096 * \throw If the connectivity data array has more than one component.
5097 * \throw If the connectivity data array has a named component.
5098 * \throw If the connectivity index data array has more than one component.
5099 * \throw If the connectivity index data array has a named component.
5100 * \throw If \a this->getMeshDimension() is neither 2 nor 3.
5101 * \throw If \a this->getSpaceDimension() is neither 2 nor 3.
5102 * \throw If \a this mesh includes cells of type different from the ones enumerated above.
5104 MEDCouplingFieldDouble *MEDCouplingUMesh::getAspectRatioField() const
5106 checkConsistencyLight();
5107 int spaceDim=getSpaceDimension();
5108 int meshDim=getMeshDimension();
5109 if(spaceDim!=2 && spaceDim!=3)
5110 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getAspectRatioField : SpaceDimension must be equal to 2 or 3 !");
5111 if(meshDim!=2 && meshDim!=3)
5112 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getAspectRatioField : MeshDimension must be equal to 2 or 3 !");
5113 MCAuto<MEDCouplingFieldDouble> ret=MEDCouplingFieldDouble::New(ON_CELLS,ONE_TIME);
5115 int nbOfCells=getNumberOfCells();
5116 MCAuto<DataArrayDouble> arr=DataArrayDouble::New();
5117 arr->alloc(nbOfCells,1);
5118 double *pt=arr->getPointer();
5119 ret->setArray(arr);//In case of throw to avoid mem leaks arr will be used after decrRef.
5120 const int *conn=_nodal_connec->begin();
5121 const int *connI=_nodal_connec_index->begin();
5122 const double *coo=_coords->begin();
5124 for(int i=0;i<nbOfCells;i++,pt++)
5126 INTERP_KERNEL::NormalizedCellType t=(INTERP_KERNEL::NormalizedCellType)*conn;
5129 case INTERP_KERNEL::NORM_TRI3:
5131 FillInCompact3DMode(spaceDim,3,conn+1,coo,tmp);
5132 *pt=INTERP_KERNEL::triAspectRatio(tmp);
5135 case INTERP_KERNEL::NORM_QUAD4:
5137 FillInCompact3DMode(spaceDim,4,conn+1,coo,tmp);
5138 *pt=INTERP_KERNEL::quadAspectRatio(tmp);
5141 case INTERP_KERNEL::NORM_TETRA4:
5143 FillInCompact3DMode(spaceDim,4,conn+1,coo,tmp);
5144 *pt=INTERP_KERNEL::tetraAspectRatio(tmp);
5148 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getAspectRatioField : A cell with not manged type (NORM_TRI3, NORM_QUAD4 and NORM_TETRA4) has been detected !");
5150 conn+=connI[i+1]-connI[i];
5152 ret->setName("AspectRatio");
5153 ret->synchronizeTimeWithSupport();
5158 * Creates a new MEDCouplingFieldDouble holding Warping factor values of all
5159 * cells of \a this 2D mesh in 3D space. It is a measure of the "planarity" of 2D cell
5160 * in 3D space. Currently only cells of the following types are
5161 * treated: INTERP_KERNEL::NORM_QUAD4.
5162 * For a cell of other type an exception is thrown.
5163 * The warp field is computed as follows: let (a,b,c,d) be the points of the quad.
5165 * \f$t=\vec{da}\times\vec{ab}\f$,
5166 * \f$u=\vec{ab}\times\vec{bc}\f$
5167 * \f$v=\vec{bc}\times\vec{cd}\f$
5168 * \f$w=\vec{cd}\times\vec{da}\f$, the warp is defined as \f$W^3\f$ with
5170 * W=min(\frac{t}{|t|}\cdot\frac{v}{|v|}, \frac{u}{|u|}\cdot\frac{w}{|w|})
5172 * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
5173 * cells and one time, lying on \a this mesh. The caller is to delete this
5174 * field using decrRef() as it is no more needed.
5175 * \throw If the coordinates array is not set.
5176 * \throw If \a this mesh contains elements of dimension different from the mesh dimension.
5177 * \throw If the connectivity data array has more than one component.
5178 * \throw If the connectivity data array has a named component.
5179 * \throw If the connectivity index data array has more than one component.
5180 * \throw If the connectivity index data array has a named component.
5181 * \throw If \a this->getMeshDimension() != 2.
5182 * \throw If \a this->getSpaceDimension() != 3.
5183 * \throw If \a this mesh includes cells of type different from the ones enumerated above.
5185 MEDCouplingFieldDouble *MEDCouplingUMesh::getWarpField() const
5187 checkConsistencyLight();
5188 int spaceDim=getSpaceDimension();
5189 int meshDim=getMeshDimension();
5191 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getWarpField : SpaceDimension must be equal to 3 !");
5193 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getWarpField : MeshDimension must be equal to 2 !");
5194 MCAuto<MEDCouplingFieldDouble> ret=MEDCouplingFieldDouble::New(ON_CELLS,ONE_TIME);
5196 int nbOfCells=getNumberOfCells();
5197 MCAuto<DataArrayDouble> arr=DataArrayDouble::New();
5198 arr->alloc(nbOfCells,1);
5199 double *pt=arr->getPointer();
5200 ret->setArray(arr);//In case of throw to avoid mem leaks arr will be used after decrRef.
5201 const int *conn=_nodal_connec->begin();
5202 const int *connI=_nodal_connec_index->begin();
5203 const double *coo=_coords->begin();
5205 for(int i=0;i<nbOfCells;i++,pt++)
5207 INTERP_KERNEL::NormalizedCellType t=(INTERP_KERNEL::NormalizedCellType)*conn;
5210 case INTERP_KERNEL::NORM_QUAD4:
5212 FillInCompact3DMode(3,4,conn+1,coo,tmp);
5213 *pt=INTERP_KERNEL::quadWarp(tmp);
5217 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getWarpField : A cell with not manged type (NORM_QUAD4) has been detected !");
5219 conn+=connI[i+1]-connI[i];
5221 ret->setName("Warp");
5222 ret->synchronizeTimeWithSupport();
5228 * Creates a new MEDCouplingFieldDouble holding Skew factor values of all
5229 * cells of \a this 2D mesh in 3D space. Currently cells of the following types are
5230 * treated: INTERP_KERNEL::NORM_QUAD4.
5231 * The skew is computed as follow for a quad with points (a,b,c,d): let
5232 * \f$u=\vec{ab}+\vec{dc}\f$ and \f$v=\vec{ac}+\vec{bd}\f$
5233 * then the skew is computed as:
5235 * s=\frac{u}{|u|}\cdot\frac{v}{|v|}
5238 * For a cell of other type an exception is thrown.
5239 * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
5240 * cells and one time, lying on \a this mesh. The caller is to delete this
5241 * field using decrRef() as it is no more needed.
5242 * \throw If the coordinates array is not set.
5243 * \throw If \a this mesh contains elements of dimension different from the mesh dimension.
5244 * \throw If the connectivity data array has more than one component.
5245 * \throw If the connectivity data array has a named component.
5246 * \throw If the connectivity index data array has more than one component.
5247 * \throw If the connectivity index data array has a named component.
5248 * \throw If \a this->getMeshDimension() != 2.
5249 * \throw If \a this->getSpaceDimension() != 3.
5250 * \throw If \a this mesh includes cells of type different from the ones enumerated above.
5252 MEDCouplingFieldDouble *MEDCouplingUMesh::getSkewField() const
5254 checkConsistencyLight();
5255 int spaceDim=getSpaceDimension();
5256 int meshDim=getMeshDimension();
5258 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getSkewField : SpaceDimension must be equal to 3 !");
5260 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getSkewField : MeshDimension must be equal to 2 !");
5261 MCAuto<MEDCouplingFieldDouble> ret=MEDCouplingFieldDouble::New(ON_CELLS,ONE_TIME);
5263 int nbOfCells=getNumberOfCells();
5264 MCAuto<DataArrayDouble> arr=DataArrayDouble::New();
5265 arr->alloc(nbOfCells,1);
5266 double *pt=arr->getPointer();
5267 ret->setArray(arr);//In case of throw to avoid mem leaks arr will be used after decrRef.
5268 const int *conn=_nodal_connec->begin();
5269 const int *connI=_nodal_connec_index->begin();
5270 const double *coo=_coords->begin();
5272 for(int i=0;i<nbOfCells;i++,pt++)
5274 INTERP_KERNEL::NormalizedCellType t=(INTERP_KERNEL::NormalizedCellType)*conn;
5277 case INTERP_KERNEL::NORM_QUAD4:
5279 FillInCompact3DMode(3,4,conn+1,coo,tmp);
5280 *pt=INTERP_KERNEL::quadSkew(tmp);
5284 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getSkewField : A cell with not manged type (NORM_QUAD4) has been detected !");
5286 conn+=connI[i+1]-connI[i];
5288 ret->setName("Skew");
5289 ret->synchronizeTimeWithSupport();
5294 * Returns the cell field giving for each cell in \a this its diameter. Diameter means the max length of all possible SEG2 in the cell.
5296 * \return a new instance of field containing the result. The returned instance has to be deallocated by the caller.
5298 * \sa getSkewField, getWarpField, getAspectRatioField, getEdgeRatioField
5300 MEDCouplingFieldDouble *MEDCouplingUMesh::computeDiameterField() const
5302 checkConsistencyLight();
5303 MCAuto<MEDCouplingFieldDouble> ret(MEDCouplingFieldDouble::New(ON_CELLS,ONE_TIME));
5305 std::set<INTERP_KERNEL::NormalizedCellType> types;
5306 ComputeAllTypesInternal(types,_nodal_connec,_nodal_connec_index);
5307 int spaceDim(getSpaceDimension()),nbCells(getNumberOfCells());
5308 MCAuto<DataArrayDouble> arr(DataArrayDouble::New());
5309 arr->alloc(nbCells,1);
5310 for(std::set<INTERP_KERNEL::NormalizedCellType>::const_iterator it=types.begin();it!=types.end();it++)
5312 INTERP_KERNEL::AutoCppPtr<INTERP_KERNEL::DiameterCalculator> dc(INTERP_KERNEL::CellModel::GetCellModel(*it).buildInstanceOfDiameterCalulator(spaceDim));
5313 MCAuto<DataArrayInt> cellIds(giveCellsWithType(*it));
5314 dc->computeForListOfCellIdsUMeshFrmt(cellIds->begin(),cellIds->end(),_nodal_connec_index->begin(),_nodal_connec->begin(),getCoords()->begin(),arr->getPointer());
5317 ret->setName("Diameter");
5322 * This method aggregate the bbox of each cell and put it into bbox parameter (xmin,xmax,ymin,ymax,zmin,zmax).
5324 * \param [in] arcDetEps - a parameter specifying in case of 2D quadratic polygon cell the detection limit between linear and arc circle. (By default 1e-12)
5325 * For all other cases this input parameter is ignored.
5326 * \return DataArrayDouble * - newly created object (to be managed by the caller) \a this number of cells tuples and 2*spacedim components.
5328 * \throw If \a this is not fully set (coordinates and connectivity).
5329 * \throw If a cell in \a this has no valid nodeId.
5330 * \sa MEDCouplingUMesh::getBoundingBoxForBBTreeFast, MEDCouplingUMesh::getBoundingBoxForBBTree2DQuadratic
5332 DataArrayDouble *MEDCouplingUMesh::getBoundingBoxForBBTree(double arcDetEps) const
5334 int mDim(getMeshDimension()),sDim(getSpaceDimension());
5335 if((mDim==3 && sDim==3) || (mDim==2 && sDim==3) || (mDim==1 && sDim==1) || ( mDim==1 && sDim==3)) // Compute refined boundary box for quadratic elements only in 2D.
5336 return getBoundingBoxForBBTreeFast();
5337 if((mDim==2 && sDim==2) || (mDim==1 && sDim==2))
5339 bool presenceOfQuadratic(false);
5340 for(std::set<INTERP_KERNEL::NormalizedCellType>::const_iterator it=_types.begin();it!=_types.end();it++)
5342 const INTERP_KERNEL::CellModel& cm(INTERP_KERNEL::CellModel::GetCellModel(*it));
5343 if(cm.isQuadratic())
5344 presenceOfQuadratic=true;
5346 if(!presenceOfQuadratic)
5347 return getBoundingBoxForBBTreeFast();
5348 if(mDim==2 && sDim==2)
5349 return getBoundingBoxForBBTree2DQuadratic(arcDetEps);
5351 return getBoundingBoxForBBTree1DQuadratic(arcDetEps);
5353 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getBoundingBoxForBBTree : Managed dimensions are (mDim=1,sDim=1), (mDim=1,sDim=2), (mDim=1,sDim=3), (mDim=2,sDim=2), (mDim=2,sDim=3) and (mDim=3,sDim=3) !");
5357 * This method aggregate the bbox of each cell only considering the nodes constituting each cell and put it into bbox parameter.
5358 * So meshes having quadratic cells the computed bounding boxes can be invalid !
5360 * \return DataArrayDouble * - newly created object (to be managed by the caller) \a this number of cells tuples and 2*spacedim components.
5362 * \throw If \a this is not fully set (coordinates and connectivity).
5363 * \throw If a cell in \a this has no valid nodeId.
5365 DataArrayDouble *MEDCouplingUMesh::getBoundingBoxForBBTreeFast() const
5367 checkFullyDefined();
5368 int spaceDim(getSpaceDimension()),nbOfCells(getNumberOfCells()),nbOfNodes(getNumberOfNodes());
5369 MCAuto<DataArrayDouble> ret(DataArrayDouble::New()); ret->alloc(nbOfCells,2*spaceDim);
5370 double *bbox(ret->getPointer());
5371 for(int i=0;i<nbOfCells*spaceDim;i++)
5373 bbox[2*i]=std::numeric_limits<double>::max();
5374 bbox[2*i+1]=-std::numeric_limits<double>::max();
5376 const double *coordsPtr(_coords->begin());
5377 const int *conn(_nodal_connec->begin()),*connI(_nodal_connec_index->begin());
5378 for(int i=0;i<nbOfCells;i++)
5380 int offset=connI[i]+1;
5381 int nbOfNodesForCell(connI[i+1]-offset),kk(0);
5382 for(int j=0;j<nbOfNodesForCell;j++)
5384 int nodeId=conn[offset+j];
5385 if(nodeId>=0 && nodeId<nbOfNodes)
5387 for(int k=0;k<spaceDim;k++)
5389 bbox[2*spaceDim*i+2*k]=std::min(bbox[2*spaceDim*i+2*k],coordsPtr[spaceDim*nodeId+k]);
5390 bbox[2*spaceDim*i+2*k+1]=std::max(bbox[2*spaceDim*i+2*k+1],coordsPtr[spaceDim*nodeId+k]);
5397 std::ostringstream oss; oss << "MEDCouplingUMesh::getBoundingBoxForBBTree : cell #" << i << " contains no valid nodeId !";
5398 throw INTERP_KERNEL::Exception(oss.str());
5405 * This method aggregates the bbox of each 2D cell in \a this considering the whole shape. This method is particularly
5406 * useful for 2D meshes having quadratic cells
5407 * because for this type of cells getBoundingBoxForBBTreeFast method may return invalid bounding boxes (since it just considers
5408 * the two extremities of the arc of circle).
5410 * \param [in] arcDetEps - a parameter specifying in case of 2D quadratic polygon cell the detection limit between linear and arc circle. (By default 1e-12)
5411 * \return DataArrayDouble * - newly created object (to be managed by the caller) \a this number of cells tuples and 2*spacedim components.
5412 * \throw If \a this is not fully defined.
5413 * \throw If \a this is not a mesh with meshDimension equal to 2.
5414 * \throw If \a this is not a mesh with spaceDimension equal to 2.
5415 * \sa MEDCouplingUMesh::getBoundingBoxForBBTree1DQuadratic
5417 DataArrayDouble *MEDCouplingUMesh::getBoundingBoxForBBTree2DQuadratic(double arcDetEps) const
5419 checkFullyDefined();
5420 INTERP_KERNEL::QuadraticPlanarArcDetectionPrecision arcPrec(arcDetEps);
5422 int spaceDim(getSpaceDimension()),mDim(getMeshDimension()),nbOfCells(getNumberOfCells());
5423 if(spaceDim!=2 || mDim!=2)
5424 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getBoundingBoxForBBTree2DQuadratic : This method should be applied on mesh with mesh dimension equal to 2 and space dimension also equal to 2!");
5425 MCAuto<DataArrayDouble> ret(DataArrayDouble::New()); ret->alloc(nbOfCells,2*spaceDim);
5426 double *bbox(ret->getPointer());
5427 const double *coords(_coords->begin());
5428 const int *conn(_nodal_connec->begin()),*connI(_nodal_connec_index->begin());
5429 for(int i=0;i<nbOfCells;i++,bbox+=4,connI++)
5431 const INTERP_KERNEL::CellModel& cm(INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[*connI]));
5432 int sz(connI[1]-connI[0]-1);
5433 std::vector<INTERP_KERNEL::Node *> nodes(sz);
5434 INTERP_KERNEL::QuadraticPolygon *pol(0);
5435 for(int j=0;j<sz;j++)
5437 int nodeId(conn[*connI+1+j]);
5438 nodes[j]=new INTERP_KERNEL::Node(coords[nodeId*2],coords[nodeId*2+1]);
5440 if(!cm.isQuadratic())
5441 pol=INTERP_KERNEL::QuadraticPolygon::BuildLinearPolygon(nodes);
5443 pol=INTERP_KERNEL::QuadraticPolygon::BuildArcCirclePolygon(nodes);
5444 INTERP_KERNEL::Bounds b; b.prepareForAggregation(); pol->fillBounds(b); delete pol;
5445 bbox[0]=b.getXMin(); bbox[1]=b.getXMax(); bbox[2]=b.getYMin(); bbox[3]=b.getYMax();
5451 * This method aggregates the bbox of each 1D cell in \a this considering the whole shape. This method is particularly
5452 * useful for 2D meshes having quadratic cells
5453 * because for this type of cells getBoundingBoxForBBTreeFast method may return invalid bounding boxes (since it just considers
5454 * the two extremities of the arc of circle).
5456 * \param [in] arcDetEps - a parameter specifying in case of 2D quadratic polygon cell the detection limit between linear and arc circle. (By default 1e-12)
5457 * \return DataArrayDouble * - newly created object (to be managed by the caller) \a this number of cells tuples and 2*spacedim components.
5458 * \throw If \a this is not fully defined.
5459 * \throw If \a this is not a mesh with meshDimension equal to 1.
5460 * \throw If \a this is not a mesh with spaceDimension equal to 2.
5461 * \sa MEDCouplingUMesh::getBoundingBoxForBBTree2DQuadratic
5463 DataArrayDouble *MEDCouplingUMesh::getBoundingBoxForBBTree1DQuadratic(double arcDetEps) const
5465 checkFullyDefined();
5466 int spaceDim(getSpaceDimension()),mDim(getMeshDimension()),nbOfCells(getNumberOfCells());
5467 if(spaceDim!=2 || mDim!=1)
5468 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getBoundingBoxForBBTree1DQuadratic : This method should be applied on mesh with mesh dimension equal to 1 and space dimension also equal to 2!");
5469 INTERP_KERNEL::QuadraticPlanarArcDetectionPrecision arcPrec(arcDetEps);
5470 MCAuto<DataArrayDouble> ret(DataArrayDouble::New()); ret->alloc(nbOfCells,2*spaceDim);
5471 double *bbox(ret->getPointer());
5472 const double *coords(_coords->begin());
5473 const int *conn(_nodal_connec->begin()),*connI(_nodal_connec_index->begin());
5474 for(int i=0;i<nbOfCells;i++,bbox+=4,connI++)
5476 const INTERP_KERNEL::CellModel& cm(INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[*connI]));
5477 int sz(connI[1]-connI[0]-1);
5478 std::vector<INTERP_KERNEL::Node *> nodes(sz);
5479 INTERP_KERNEL::Edge *edge(0);
5480 for(int j=0;j<sz;j++)
5482 int nodeId(conn[*connI+1+j]);
5483 nodes[j]=new INTERP_KERNEL::Node(coords[nodeId*2],coords[nodeId*2+1]);
5485 if(!cm.isQuadratic())
5486 edge=INTERP_KERNEL::QuadraticPolygon::BuildLinearEdge(nodes);
5488 edge=INTERP_KERNEL::QuadraticPolygon::BuildArcCircleEdge(nodes);
5489 const INTERP_KERNEL::Bounds& b(edge->getBounds());
5490 bbox[0]=b.getXMin(); bbox[1]=b.getXMax(); bbox[2]=b.getYMin(); bbox[3]=b.getYMax(); edge->decrRef();
5497 namespace MEDCouplingImpl
5502 ConnReader(const int *c, int val):_conn(c),_val(val) { }
5503 bool operator() (const int& pos) { return _conn[pos]!=_val; }
5512 ConnReader2(const int *c, int val):_conn(c),_val(val) { }
5513 bool operator() (const int& pos) { return _conn[pos]==_val; }
5523 * This method expects that \a this is sorted by types. If not an exception will be thrown.
5524 * This method returns in the same format as code (see MEDCouplingUMesh::checkTypeConsistencyAndContig or MEDCouplingUMesh::splitProfilePerType) how
5525 * \a this is composed in cell types.
5526 * The returned array is of size 3*n where n is the number of different types present in \a this.
5527 * For every k in [0,n] ret[3*k+2]==-1 because it has no sense here.
5528 * This parameter is kept only for compatibility with other methode listed above.
5530 std::vector<int> MEDCouplingUMesh::getDistributionOfTypes() const
5532 checkConnectivityFullyDefined();
5533 const int *conn=_nodal_connec->begin();
5534 const int *connI=_nodal_connec_index->begin();
5535 const int *work=connI;
5536 int nbOfCells=getNumberOfCells();
5537 std::size_t n=getAllGeoTypes().size();
5538 std::vector<int> ret(3*n,-1); //ret[3*k+2]==-1 because it has no sense here
5539 std::set<INTERP_KERNEL::NormalizedCellType> types;
5540 for(std::size_t i=0;work!=connI+nbOfCells;i++)
5542 INTERP_KERNEL::NormalizedCellType typ=(INTERP_KERNEL::NormalizedCellType)conn[*work];
5543 if(types.find(typ)!=types.end())
5545 std::ostringstream oss; oss << "MEDCouplingUMesh::getDistributionOfTypes : Type " << INTERP_KERNEL::CellModel::GetCellModel(typ).getRepr();
5546 oss << " is not contiguous !";
5547 throw INTERP_KERNEL::Exception(oss.str());
5551 const int *work2=std::find_if(work+1,connI+nbOfCells,MEDCouplingImpl::ConnReader(conn,typ));
5552 ret[3*i+1]=(int)std::distance(work,work2);
5559 * This method is used to check that this has contiguous cell type in same order than described in \a code.
5560 * only for types cell, type node is not managed.
5561 * Format of \a code is the following. \a code should be of size 3*n and non empty. If not an exception is thrown.
5562 * foreach k in [0,n) on 3*k pos represent the geometric type and 3*k+1 number of elements of type 3*k.
5563 * 3*k+2 refers if different from -1 the pos in 'idsPerType' to get the corresponding array.
5564 * If 2 or more same geometric type is in \a code and exception is thrown too.
5566 * This method firstly checks
5567 * If it exists k so that 3*k geometric type is not in geometric types of this an exception will be thrown.
5568 * If it exists k so that 3*k geometric type exists but the number of consecutive cell types does not match,
5569 * an exception is thrown too.
5571 * If all geometric types in \a code are exactly those in \a this null pointer is returned.
5572 * If it exists a geometric type in \a this \b not in \a code \b no exception is thrown
5573 * and a DataArrayInt instance is returned that the user has the responsability to deallocate.
5575 DataArrayInt *MEDCouplingUMesh::checkTypeConsistencyAndContig(const std::vector<int>& code, const std::vector<const DataArrayInt *>& idsPerType) const
5578 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::checkTypeConsistencyAndContig : code is empty, should not !");
5579 std::size_t sz=code.size();
5582 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::checkTypeConsistencyAndContig : code size is NOT %3 !");
5583 std::vector<INTERP_KERNEL::NormalizedCellType> types;
5585 bool isNoPflUsed=true;
5586 for(std::size_t i=0;i<n;i++)
5587 if(std::find(types.begin(),types.end(),(INTERP_KERNEL::NormalizedCellType)code[3*i])==types.end())
5589 types.push_back((INTERP_KERNEL::NormalizedCellType)code[3*i]);
5591 if(_types.find((INTERP_KERNEL::NormalizedCellType)code[3*i])==_types.end())
5592 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::checkTypeConsistencyAndContig : expected geo types not in this !");
5593 isNoPflUsed=isNoPflUsed && (code[3*i+2]==-1);
5596 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::checkTypeConsistencyAndContig : code contains duplication of types in unstructured mesh !");
5599 if(!checkConsecutiveCellTypesAndOrder(&types[0],&types[0]+types.size()))
5600 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::checkTypeConsistencyAndContig : non contiguous type !");
5601 if(types.size()==_types.size())
5604 MCAuto<DataArrayInt> ret=DataArrayInt::New();
5606 int *retPtr=ret->getPointer();
5607 const int *connI=_nodal_connec_index->begin();
5608 const int *conn=_nodal_connec->begin();
5609 int nbOfCells=getNumberOfCells();
5612 for(std::vector<INTERP_KERNEL::NormalizedCellType>::const_iterator it=types.begin();it!=types.end();it++,kk++)
5614 i=std::find_if(i,connI+nbOfCells,MEDCouplingImpl::ConnReader2(conn,(int)(*it)));
5615 int offset=(int)std::distance(connI,i);
5616 const int *j=std::find_if(i+1,connI+nbOfCells,MEDCouplingImpl::ConnReader(conn,(int)(*it)));
5617 int nbOfCellsOfCurType=(int)std::distance(i,j);
5618 if(code[3*kk+2]==-1)
5619 for(int k=0;k<nbOfCellsOfCurType;k++)
5623 int idInIdsPerType=code[3*kk+2];
5624 if(idInIdsPerType>=0 && idInIdsPerType<(int)idsPerType.size())
5626 const DataArrayInt *zePfl=idsPerType[idInIdsPerType];
5629 zePfl->checkAllocated();
5630 if(zePfl->getNumberOfComponents()==1)
5632 for(const int *k=zePfl->begin();k!=zePfl->end();k++,retPtr++)
5634 if(*k>=0 && *k<nbOfCellsOfCurType)
5635 *retPtr=(*k)+offset;
5638 std::ostringstream oss; oss << "MEDCouplingUMesh::checkTypeConsistencyAndContig : the section " << kk << " points to the profile #" << idInIdsPerType;
5639 oss << ", and this profile contains a value " << *k << " should be in [0," << nbOfCellsOfCurType << ") !";
5640 throw INTERP_KERNEL::Exception(oss.str());
5645 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::checkTypeConsistencyAndContig : presence of a profile with nb of compo != 1 !");
5648 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::checkTypeConsistencyAndContig : presence of null profile !");
5652 std::ostringstream oss; oss << "MEDCouplingUMesh::checkTypeConsistencyAndContig : at section " << kk << " of code it points to the array #" << idInIdsPerType;
5653 oss << " should be in [0," << idsPerType.size() << ") !";
5654 throw INTERP_KERNEL::Exception(oss.str());
5663 * This method makes the hypothesis that \a this is sorted by type. If not an exception will be thrown.
5664 * This method is the opposite of MEDCouplingUMesh::checkTypeConsistencyAndContig method. Given a list of cells in \a profile it returns a list of sub-profiles sorted by geo type.
5665 * The result is put in the array \a idsPerType. In the returned parameter \a code, foreach i \a code[3*i+2] refers (if different from -1) to a location into the \a idsPerType.
5666 * This method has 1 input \a profile and 3 outputs \a code \a idsInPflPerType and \a idsPerType.
5668 * \param [in] profile
5669 * \param [out] code is a vector of size 3*n where n is the number of different geometric type in \a this \b reduced to the profile \a profile. \a code has exactly the same semantic than in MEDCouplingUMesh::checkTypeConsistencyAndContig method.
5670 * \param [out] idsInPflPerType is a vector of size of different geometric type in the subpart defined by \a profile of \a this ( equal to \a code.size()/3). For each i,
5671 * \a idsInPflPerType[i] stores the tuple ids in \a profile that correspond to the geometric type code[3*i+0]
5672 * \param [out] idsPerType is a vector of size of different sub profiles needed to be defined to represent the profile \a profile for a given geometric type.
5673 * This vector can be empty in case of all geometric type cells are fully covered in ascending in the given input \a profile.
5674 * \throw if \a profile has not exactly one component. It throws too, if \a profile contains some values not in [0,getNumberOfCells()) or if \a this is not fully defined
5676 void MEDCouplingUMesh::splitProfilePerType(const DataArrayInt *profile, std::vector<int>& code, std::vector<DataArrayInt *>& idsInPflPerType, std::vector<DataArrayInt *>& idsPerType) const
5679 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::splitProfilePerType : input profile is NULL !");
5680 if(profile->getNumberOfComponents()!=1)
5681 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::splitProfilePerType : input profile should have exactly one component !");
5682 checkConnectivityFullyDefined();
5683 const int *conn=_nodal_connec->begin();
5684 const int *connI=_nodal_connec_index->begin();
5685 int nbOfCells=getNumberOfCells();
5686 std::vector<INTERP_KERNEL::NormalizedCellType> types;
5687 std::vector<int> typeRangeVals(1);
5688 for(const int *i=connI;i!=connI+nbOfCells;)
5690 INTERP_KERNEL::NormalizedCellType curType=(INTERP_KERNEL::NormalizedCellType)conn[*i];
5691 if(std::find(types.begin(),types.end(),curType)!=types.end())
5693 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::splitProfilePerType : current mesh is not sorted by type !");
5695 types.push_back(curType);
5696 i=std::find_if(i+1,connI+nbOfCells,MEDCouplingImpl::ConnReader(conn,(int)curType));
5697 typeRangeVals.push_back((int)std::distance(connI,i));
5700 DataArrayInt *castArr=0,*rankInsideCast=0,*castsPresent=0;
5701 profile->splitByValueRange(&typeRangeVals[0],&typeRangeVals[0]+typeRangeVals.size(),castArr,rankInsideCast,castsPresent);
5702 MCAuto<DataArrayInt> tmp0=castArr;
5703 MCAuto<DataArrayInt> tmp1=rankInsideCast;
5704 MCAuto<DataArrayInt> tmp2=castsPresent;
5706 int nbOfCastsFinal=castsPresent->getNumberOfTuples();
5707 code.resize(3*nbOfCastsFinal);
5708 std::vector< MCAuto<DataArrayInt> > idsInPflPerType2;
5709 std::vector< MCAuto<DataArrayInt> > idsPerType2;
5710 for(int i=0;i<nbOfCastsFinal;i++)
5712 int castId=castsPresent->getIJ(i,0);
5713 MCAuto<DataArrayInt> tmp3=castArr->findIdsEqual(castId);
5714 idsInPflPerType2.push_back(tmp3);
5715 code[3*i]=(int)types[castId];
5716 code[3*i+1]=tmp3->getNumberOfTuples();
5717 MCAuto<DataArrayInt> tmp4=rankInsideCast->selectByTupleId(tmp3->begin(),tmp3->begin()+tmp3->getNumberOfTuples());
5718 if(!tmp4->isIota(typeRangeVals[castId+1]-typeRangeVals[castId]))
5720 tmp4->copyStringInfoFrom(*profile);
5721 idsPerType2.push_back(tmp4);
5722 code[3*i+2]=(int)idsPerType2.size()-1;
5729 std::size_t sz2=idsInPflPerType2.size();
5730 idsInPflPerType.resize(sz2);
5731 for(std::size_t i=0;i<sz2;i++)
5733 DataArrayInt *locDa=idsInPflPerType2[i];
5735 idsInPflPerType[i]=locDa;
5737 std::size_t sz=idsPerType2.size();
5738 idsPerType.resize(sz);
5739 for(std::size_t i=0;i<sz;i++)
5741 DataArrayInt *locDa=idsPerType2[i];
5743 idsPerType[i]=locDa;
5748 * This method is here too emulate the MEDMEM behaviour on BDC (buildDescendingConnectivity). Hoping this method becomes deprecated very soon.
5749 * This method make the assumption that \a this and 'nM1LevMesh' mesh lyies on same coords (same pointer) as MED and MEDMEM does.
5750 * The following equality should be verified 'nM1LevMesh->getMeshDimension()==this->getMeshDimension()-1'
5751 * This method returns 5+2 elements. 'desc', 'descIndx', 'revDesc', 'revDescIndx' and 'meshnM1' behaves exactly as MEDCoupling::MEDCouplingUMesh::buildDescendingConnectivity except the content as described after. The returned array specifies the n-1 mesh reordered by type as MEDMEM does. 'nM1LevMeshIds' contains the ids in returned 'meshnM1'. Finally 'meshnM1Old2New' contains numbering old2new that is to say the cell #k in coarse 'nM1LevMesh' will have the number ret[k] in returned mesh 'nM1LevMesh' MEDMEM reordered.
5753 MEDCouplingUMesh *MEDCouplingUMesh::emulateMEDMEMBDC(const MEDCouplingUMesh *nM1LevMesh, DataArrayInt *desc, DataArrayInt *descIndx, DataArrayInt *&revDesc, DataArrayInt *&revDescIndx, DataArrayInt *& nM1LevMeshIds, DataArrayInt *&meshnM1Old2New) const
5755 checkFullyDefined();
5756 nM1LevMesh->checkFullyDefined();
5757 if(getMeshDimension()-1!=nM1LevMesh->getMeshDimension())
5758 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::emulateMEDMEMBDC : The mesh passed as first argument should have a meshDim equal to this->getMeshDimension()-1 !" );
5759 if(_coords!=nM1LevMesh->getCoords())
5760 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::emulateMEDMEMBDC : 'this' and mesh in first argument should share the same coords : Use tryToShareSameCoords method !");
5761 MCAuto<DataArrayInt> tmp0=DataArrayInt::New();
5762 MCAuto<DataArrayInt> tmp1=DataArrayInt::New();
5763 MCAuto<MEDCouplingUMesh> ret1=buildDescendingConnectivity(desc,descIndx,tmp0,tmp1);
5764 MCAuto<DataArrayInt> ret0=ret1->sortCellsInMEDFileFrmt();
5765 desc->transformWithIndArr(ret0->begin(),ret0->begin()+ret0->getNbOfElems());
5766 MCAuto<MEDCouplingUMesh> tmp=MEDCouplingUMesh::New();
5767 tmp->setConnectivity(tmp0,tmp1);
5768 tmp->renumberCells(ret0->begin(),false);
5769 revDesc=tmp->getNodalConnectivity();
5770 revDescIndx=tmp->getNodalConnectivityIndex();
5771 DataArrayInt *ret=0;
5772 if(!ret1->areCellsIncludedIn(nM1LevMesh,2,ret))
5775 ret->getMaxValue(tmp2);
5777 std::ostringstream oss; oss << "MEDCouplingUMesh::emulateMEDMEMBDC : input N-1 mesh present a cell not in descending mesh ... Id of cell is " << tmp2 << " !";
5778 throw INTERP_KERNEL::Exception(oss.str());
5783 revDescIndx->incrRef();
5786 meshnM1Old2New=ret0;
5791 * Permutes the nodal connectivity arrays so that the cells are sorted by type, which is
5792 * necessary for writing the mesh to MED file. Additionally returns a permutation array
5793 * in "Old to New" mode.
5794 * \return DataArrayInt * - a new instance of DataArrayInt. The caller is to delete
5795 * this array using decrRef() as it is no more needed.
5796 * \throw If the nodal connectivity of cells is not defined.
5798 DataArrayInt *MEDCouplingUMesh::sortCellsInMEDFileFrmt()
5800 checkConnectivityFullyDefined();
5801 MCAuto<DataArrayInt> ret=getRenumArrForMEDFileFrmt();
5802 renumberCells(ret->begin(),false);
5807 * This methods checks that cells are sorted by their types.
5808 * This method makes asumption (no check) that connectivity is correctly set before calling.
5810 bool MEDCouplingUMesh::checkConsecutiveCellTypes() const
5812 checkFullyDefined();
5813 const int *conn=_nodal_connec->begin();
5814 const int *connI=_nodal_connec_index->begin();
5815 int nbOfCells=getNumberOfCells();
5816 std::set<INTERP_KERNEL::NormalizedCellType> types;
5817 for(const int *i=connI;i!=connI+nbOfCells;)
5819 INTERP_KERNEL::NormalizedCellType curType=(INTERP_KERNEL::NormalizedCellType)conn[*i];
5820 if(types.find(curType)!=types.end())
5822 types.insert(curType);
5823 i=std::find_if(i+1,connI+nbOfCells,MEDCouplingImpl::ConnReader(conn,(int)curType));
5829 * This method is a specialization of MEDCouplingUMesh::checkConsecutiveCellTypesAndOrder method that is called here.
5830 * The geometric type order is specified by MED file.
5832 * \sa MEDCouplingUMesh::checkConsecutiveCellTypesAndOrder
5834 bool MEDCouplingUMesh::checkConsecutiveCellTypesForMEDFileFrmt() const
5836 return checkConsecutiveCellTypesAndOrder(MEDMEM_ORDER,MEDMEM_ORDER+N_MEDMEM_ORDER);
5840 * This method performs the same job as checkConsecutiveCellTypes except that the order of types sequence is analyzed to check
5841 * that the order is specified in array defined by [ \a orderBg , \a orderEnd ).
5842 * If there is some geo types in \a this \b NOT in [ \a orderBg, \a orderEnd ) it is OK (return true) if contiguous.
5843 * If there is some geo types in [ \a orderBg, \a orderEnd ) \b NOT in \a this it is OK too (return true) if contiguous.
5845 bool MEDCouplingUMesh::checkConsecutiveCellTypesAndOrder(const INTERP_KERNEL::NormalizedCellType *orderBg, const INTERP_KERNEL::NormalizedCellType *orderEnd) const
5847 checkFullyDefined();
5848 const int *conn=_nodal_connec->begin();
5849 const int *connI=_nodal_connec_index->begin();
5850 int nbOfCells=getNumberOfCells();
5854 std::set<INTERP_KERNEL::NormalizedCellType> sg;
5855 for(const int *i=connI;i!=connI+nbOfCells;)
5857 INTERP_KERNEL::NormalizedCellType curType=(INTERP_KERNEL::NormalizedCellType)conn[*i];
5858 const INTERP_KERNEL::NormalizedCellType *isTypeExists=std::find(orderBg,orderEnd,curType);
5859 if(isTypeExists!=orderEnd)
5861 int pos=(int)std::distance(orderBg,isTypeExists);
5865 i=std::find_if(i+1,connI+nbOfCells,MEDCouplingImpl::ConnReader(conn,(int)curType));
5869 if(sg.find(curType)==sg.end())
5871 i=std::find_if(i+1,connI+nbOfCells,MEDCouplingImpl::ConnReader(conn,(int)curType));
5882 * This method returns 2 newly allocated DataArrayInt instances. The first is an array of size 'this->getNumberOfCells()' with one component,
5883 * that tells for each cell the pos of its type in the array on type given in input parameter. The 2nd output parameter is an array with the same
5884 * number of tuples than input type array and with one component. This 2nd output array gives type by type the number of occurence of type in 'this'.
5886 DataArrayInt *MEDCouplingUMesh::getLevArrPerCellTypes(const INTERP_KERNEL::NormalizedCellType *orderBg, const INTERP_KERNEL::NormalizedCellType *orderEnd, DataArrayInt *&nbPerType) const
5888 checkConnectivityFullyDefined();
5889 int nbOfCells=getNumberOfCells();
5890 const int *conn=_nodal_connec->begin();
5891 const int *connI=_nodal_connec_index->begin();
5892 MCAuto<DataArrayInt> tmpa=DataArrayInt::New();
5893 MCAuto<DataArrayInt> tmpb=DataArrayInt::New();
5894 tmpa->alloc(nbOfCells,1);
5895 tmpb->alloc((int)std::distance(orderBg,orderEnd),1);
5896 tmpb->fillWithZero();
5897 int *tmp=tmpa->getPointer();
5898 int *tmp2=tmpb->getPointer();
5899 for(const int *i=connI;i!=connI+nbOfCells;i++)
5901 const INTERP_KERNEL::NormalizedCellType *where=std::find(orderBg,orderEnd,(INTERP_KERNEL::NormalizedCellType)conn[*i]);
5904 int pos=(int)std::distance(orderBg,where);
5906 tmp[std::distance(connI,i)]=pos;
5910 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[*i]);
5911 std::ostringstream oss; oss << "MEDCouplingUMesh::getLevArrPerCellTypes : Cell #" << std::distance(connI,i);
5912 oss << " has a type " << cm.getRepr() << " not in input array of type !";
5913 throw INTERP_KERNEL::Exception(oss.str());
5916 nbPerType=tmpb.retn();
5921 * This method behaves exactly as MEDCouplingUMesh::getRenumArrForConsecutiveCellTypesSpec but the order is those defined in MED file spec.
5923 * \return a new object containing the old to new correspondance.
5925 * \sa MEDCouplingUMesh::getRenumArrForConsecutiveCellTypesSpec, MEDCouplingUMesh::sortCellsInMEDFileFrmt.
5927 DataArrayInt *MEDCouplingUMesh::getRenumArrForMEDFileFrmt() const
5929 return getRenumArrForConsecutiveCellTypesSpec(MEDMEM_ORDER,MEDMEM_ORDER+N_MEDMEM_ORDER);
5933 * This method is similar to method MEDCouplingUMesh::rearrange2ConsecutiveCellTypes except that the type order is specfied by [ \a orderBg , \a orderEnd ) (as MEDCouplingUMesh::checkConsecutiveCellTypesAndOrder method) and that this method is \b const and performs \b NO permutation in \a this.
5934 * This method returns an array of size getNumberOfCells() that gives a renumber array old2New that can be used as input of MEDCouplingMesh::renumberCells.
5935 * The mesh after this call to MEDCouplingMesh::renumberCells will pass the test of MEDCouplingUMesh::checkConsecutiveCellTypesAndOrder with the same inputs.
5936 * The returned array minimizes the permutations that is to say the order of cells inside same geometric type remains the same.
5938 DataArrayInt *MEDCouplingUMesh::getRenumArrForConsecutiveCellTypesSpec(const INTERP_KERNEL::NormalizedCellType *orderBg, const INTERP_KERNEL::NormalizedCellType *orderEnd) const
5940 DataArrayInt *nbPerType=0;
5941 MCAuto<DataArrayInt> tmpa=getLevArrPerCellTypes(orderBg,orderEnd,nbPerType);
5942 nbPerType->decrRef();
5943 return tmpa->buildPermArrPerLevel();
5947 * This method reorganize the cells of \a this so that the cells with same geometric types are put together.
5948 * The number of cells remains unchanged after the call of this method.
5949 * This method tries to minimizes the number of needed permutations. So, this method behaves not exactly as
5950 * MEDCouplingUMesh::sortCellsInMEDFileFrmt.
5952 * \return the array giving the correspondance old to new.
5954 DataArrayInt *MEDCouplingUMesh::rearrange2ConsecutiveCellTypes()
5956 checkFullyDefined();
5958 const int *conn=_nodal_connec->begin();
5959 const int *connI=_nodal_connec_index->begin();
5960 int nbOfCells=getNumberOfCells();
5961 std::vector<INTERP_KERNEL::NormalizedCellType> types;
5962 for(const int *i=connI;i!=connI+nbOfCells && (types.size()!=_types.size());)
5963 if(std::find(types.begin(),types.end(),(INTERP_KERNEL::NormalizedCellType)conn[*i])==types.end())
5965 INTERP_KERNEL::NormalizedCellType curType=(INTERP_KERNEL::NormalizedCellType)conn[*i];
5966 types.push_back(curType);
5967 for(i++;i!=connI+nbOfCells && (INTERP_KERNEL::NormalizedCellType)conn[*i]==curType;i++);
5969 DataArrayInt *ret=DataArrayInt::New();
5970 ret->alloc(nbOfCells,1);
5971 int *retPtr=ret->getPointer();
5972 std::fill(retPtr,retPtr+nbOfCells,-1);
5974 for(std::vector<INTERP_KERNEL::NormalizedCellType>::const_iterator iter=types.begin();iter!=types.end();iter++)
5976 for(const int *i=connI;i!=connI+nbOfCells;i++)
5977 if((INTERP_KERNEL::NormalizedCellType)conn[*i]==(*iter))
5978 retPtr[std::distance(connI,i)]=newCellId++;
5980 renumberCells(retPtr,false);
5985 * This method splits \a this into as mush as untructured meshes that consecutive set of same type cells.
5986 * So this method has typically a sense if MEDCouplingUMesh::checkConsecutiveCellTypes has a sense.
5987 * This method makes asumption that connectivity is correctly set before calling.
5989 std::vector<MEDCouplingUMesh *> MEDCouplingUMesh::splitByType() const
5991 checkConnectivityFullyDefined();
5992 const int *conn=_nodal_connec->begin();
5993 const int *connI=_nodal_connec_index->begin();
5994 int nbOfCells=getNumberOfCells();
5995 std::vector<MEDCouplingUMesh *> ret;
5996 for(const int *i=connI;i!=connI+nbOfCells;)
5998 INTERP_KERNEL::NormalizedCellType curType=(INTERP_KERNEL::NormalizedCellType)conn[*i];
5999 int beginCellId=(int)std::distance(connI,i);
6000 i=std::find_if(i+1,connI+nbOfCells,MEDCouplingImpl::ConnReader(conn,(int)curType));
6001 int endCellId=(int)std::distance(connI,i);
6002 int sz=endCellId-beginCellId;
6003 int *cells=new int[sz];
6004 for(int j=0;j<sz;j++)
6005 cells[j]=beginCellId+j;
6006 MEDCouplingUMesh *m=(MEDCouplingUMesh *)buildPartOfMySelf(cells,cells+sz,true);
6014 * This method performs the opposite operation than those in MEDCoupling1SGTUMesh::buildUnstructured.
6015 * If \a this is a single geometric type unstructured mesh, it will be converted into a more compact data structure,
6016 * MEDCoupling1GTUMesh instance. The returned instance will aggregate the same DataArrayDouble instance of coordinates than \a this.
6018 * \return a newly allocated instance, that the caller must manage.
6019 * \throw If \a this contains more than one geometric type.
6020 * \throw If the nodal connectivity of \a this is not fully defined.
6021 * \throw If the internal data is not coherent.
6023 MEDCoupling1GTUMesh *MEDCouplingUMesh::convertIntoSingleGeoTypeMesh() const
6025 checkConnectivityFullyDefined();
6026 if(_types.size()!=1)
6027 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertIntoSingleGeoTypeMesh : current mesh does not contain exactly one geometric type !");
6028 INTERP_KERNEL::NormalizedCellType typ=*_types.begin();
6029 MCAuto<MEDCoupling1GTUMesh> ret=MEDCoupling1GTUMesh::New(getName(),typ);
6030 ret->setCoords(getCoords());
6031 MEDCoupling1SGTUMesh *retC=dynamic_cast<MEDCoupling1SGTUMesh *>((MEDCoupling1GTUMesh*)ret);
6034 MCAuto<DataArrayInt> c=convertNodalConnectivityToStaticGeoTypeMesh();
6035 retC->setNodalConnectivity(c);
6039 MEDCoupling1DGTUMesh *retD=dynamic_cast<MEDCoupling1DGTUMesh *>((MEDCoupling1GTUMesh*)ret);
6041 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertIntoSingleGeoTypeMesh : Internal error !");
6042 DataArrayInt *c=0,*ci=0;
6043 convertNodalConnectivityToDynamicGeoTypeMesh(c,ci);
6044 MCAuto<DataArrayInt> cs(c),cis(ci);
6045 retD->setNodalConnectivity(cs,cis);
6050 DataArrayInt *MEDCouplingUMesh::convertNodalConnectivityToStaticGeoTypeMesh() const
6052 checkConnectivityFullyDefined();
6053 if(_types.size()!=1)
6054 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertNodalConnectivityToStaticGeoTypeMesh : current mesh does not contain exactly one geometric type !");
6055 INTERP_KERNEL::NormalizedCellType typ=*_types.begin();
6056 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(typ);
6059 std::ostringstream oss; oss << "MEDCouplingUMesh::convertNodalConnectivityToStaticGeoTypeMesh : this contains a single geo type (" << cm.getRepr() << ") but ";
6060 oss << "this type is dynamic ! Only static geometric type is possible for that type ! call convertNodalConnectivityToDynamicGeoTypeMesh instead !";
6061 throw INTERP_KERNEL::Exception(oss.str());
6063 int nbCells=getNumberOfCells();
6065 int nbNodesPerCell=(int)cm.getNumberOfNodes();
6066 MCAuto<DataArrayInt> connOut=DataArrayInt::New(); connOut->alloc(nbCells*nbNodesPerCell,1);
6067 int *outPtr=connOut->getPointer();
6068 const int *conn=_nodal_connec->begin();
6069 const int *connI=_nodal_connec_index->begin();
6071 for(int i=0;i<nbCells;i++,connI++)
6073 if(conn[connI[0]]==typi && connI[1]-connI[0]==nbNodesPerCell)
6074 outPtr=std::copy(conn+connI[0]+1,conn+connI[1],outPtr);
6077 std::ostringstream oss; oss << "MEDCouplingUMesh::convertNodalConnectivityToStaticGeoTypeMesh : there something wrong in cell #" << i << " ! The type of cell is not those expected, or the length of nodal connectivity is not those expected (" << nbNodesPerCell-1 << ") !";
6078 throw INTERP_KERNEL::Exception(oss.str());
6081 return connOut.retn();
6085 * Convert the nodal connectivity of the mesh so that all the cells are of dynamic types (polygon or quadratic
6086 * polygon). This returns the corresponding new nodal connectivity in \ref numbering-indirect format.
6090 void MEDCouplingUMesh::convertNodalConnectivityToDynamicGeoTypeMesh(DataArrayInt *&nodalConn, DataArrayInt *&nodalConnIndex) const
6092 static const char msg0[]="MEDCouplingUMesh::convertNodalConnectivityToDynamicGeoTypeMesh : nodal connectivity in this are invalid ! Call checkConsistency !";
6093 checkConnectivityFullyDefined();
6094 if(_types.size()!=1)
6095 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertNodalConnectivityToDynamicGeoTypeMesh : current mesh does not contain exactly one geometric type !");
6096 int nbCells=getNumberOfCells(),lgth=_nodal_connec->getNumberOfTuples();
6098 throw INTERP_KERNEL::Exception(msg0);
6099 MCAuto<DataArrayInt> c(DataArrayInt::New()),ci(DataArrayInt::New());
6100 c->alloc(lgth-nbCells,1); ci->alloc(nbCells+1,1);
6101 int *cp(c->getPointer()),*cip(ci->getPointer());
6102 const int *incp(_nodal_connec->begin()),*incip(_nodal_connec_index->begin());
6104 for(int i=0;i<nbCells;i++,cip++,incip++)
6106 int strt(incip[0]+1),stop(incip[1]);//+1 to skip geo type
6107 int delta(stop-strt);
6110 if((strt>=0 && strt<lgth) && (stop>=0 && stop<=lgth))
6111 cp=std::copy(incp+strt,incp+stop,cp);
6113 throw INTERP_KERNEL::Exception(msg0);
6116 throw INTERP_KERNEL::Exception(msg0);
6117 cip[1]=cip[0]+delta;
6119 nodalConn=c.retn(); nodalConnIndex=ci.retn();
6123 * This method takes in input a vector of MEDCouplingUMesh instances lying on the same coordinates with same mesh dimensions.
6124 * Each mesh in \b ms must be sorted by type with the same order (typically using MEDCouplingUMesh::sortCellsInMEDFileFrmt).
6125 * This method is particulary useful for MED file interaction. It allows to aggregate several meshes and keeping the type sorting
6126 * and the track of the permutation by chunk of same geotype cells to retrieve it. The traditional formats old2new and new2old
6127 * are not used here to avoid the build of big permutation array.
6129 * \param [in] ms meshes with same mesh dimension lying on the same coords and sorted by type following de the same geometric type order than
6130 * those specified in MEDCouplingUMesh::sortCellsInMEDFileFrmt method.
6131 * \param [out] szOfCellGrpOfSameType is a newly allocated DataArrayInt instance whose number of tuples is equal to the number of chunks of same geotype
6132 * in all meshes in \b ms. The accumulation of all values of this array is equal to the number of cells of returned mesh.
6133 * \param [out] idInMsOfCellGrpOfSameType is a newly allocated DataArrayInt instance having the same size than \b szOfCellGrpOfSameType. This
6134 * output array gives for each chunck of same type the corresponding mesh id in \b ms.
6135 * \return A newly allocated unstructured mesh that is the result of the aggregation on same coords of all meshes in \b ms. This returned mesh
6136 * is sorted by type following the geo cell types order of MEDCouplingUMesh::sortCellsInMEDFileFrmt method.
6138 MEDCouplingUMesh *MEDCouplingUMesh::AggregateSortedByTypeMeshesOnSameCoords(const std::vector<const MEDCouplingUMesh *>& ms,
6139 DataArrayInt *&szOfCellGrpOfSameType,
6140 DataArrayInt *&idInMsOfCellGrpOfSameType)
6142 std::vector<const MEDCouplingUMesh *> ms2;
6143 for(std::vector<const MEDCouplingUMesh *>::const_iterator it=ms.begin();it!=ms.end();it++)
6146 (*it)->checkConnectivityFullyDefined();
6150 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::AggregateSortedByTypeMeshesOnSameCoords : input vector is empty !");
6151 const DataArrayDouble *refCoo=ms2[0]->getCoords();
6152 int meshDim=ms2[0]->getMeshDimension();
6153 std::vector<const MEDCouplingUMesh *> m1ssm;
6154 std::vector< MCAuto<MEDCouplingUMesh> > m1ssmAuto;
6156 std::vector<const MEDCouplingUMesh *> m1ssmSingle;
6157 std::vector< MCAuto<MEDCouplingUMesh> > m1ssmSingleAuto;
6159 MCAuto<DataArrayInt> ret1(DataArrayInt::New()),ret2(DataArrayInt::New());
6160 ret1->alloc(0,1); ret2->alloc(0,1);
6161 for(std::vector<const MEDCouplingUMesh *>::const_iterator it=ms2.begin();it!=ms2.end();it++,rk++)
6163 if(meshDim!=(*it)->getMeshDimension())
6164 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::AggregateSortedByTypeMeshesOnSameCoords : meshdims mismatch !");
6165 if(refCoo!=(*it)->getCoords())
6166 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::AggregateSortedByTypeMeshesOnSameCoords : meshes are not shared by a single coordinates coords !");
6167 std::vector<MEDCouplingUMesh *> sp=(*it)->splitByType();
6168 std::copy(sp.begin(),sp.end(),std::back_insert_iterator< std::vector<const MEDCouplingUMesh *> >(m1ssm));
6169 std::copy(sp.begin(),sp.end(),std::back_insert_iterator< std::vector<MCAuto<MEDCouplingUMesh> > >(m1ssmAuto));
6170 for(std::vector<MEDCouplingUMesh *>::const_iterator it2=sp.begin();it2!=sp.end();it2++)
6172 MEDCouplingUMesh *singleCell=static_cast<MEDCouplingUMesh *>((*it2)->buildPartOfMySelf(&fake,&fake+1,true));
6173 m1ssmSingleAuto.push_back(singleCell);
6174 m1ssmSingle.push_back(singleCell);
6175 ret1->pushBackSilent((*it2)->getNumberOfCells()); ret2->pushBackSilent(rk);
6178 MCAuto<MEDCouplingUMesh> m1ssmSingle2=MEDCouplingUMesh::MergeUMeshesOnSameCoords(m1ssmSingle);
6179 MCAuto<DataArrayInt> renum=m1ssmSingle2->sortCellsInMEDFileFrmt();
6180 std::vector<const MEDCouplingUMesh *> m1ssmfinal(m1ssm.size());
6181 for(std::size_t i=0;i<m1ssm.size();i++)
6182 m1ssmfinal[renum->getIJ(i,0)]=m1ssm[i];
6183 MCAuto<MEDCouplingUMesh> ret0=MEDCouplingUMesh::MergeUMeshesOnSameCoords(m1ssmfinal);
6184 szOfCellGrpOfSameType=ret1->renumber(renum->begin());
6185 idInMsOfCellGrpOfSameType=ret2->renumber(renum->begin());
6190 * This method returns a newly created DataArrayInt instance.
6191 * This method retrieves cell ids in [ \a begin, \a end ) that have the type \a type.
6193 DataArrayInt *MEDCouplingUMesh::keepCellIdsByType(INTERP_KERNEL::NormalizedCellType type, const int *begin, const int *end) const
6195 checkFullyDefined();
6196 const int *conn=_nodal_connec->begin();
6197 const int *connIndex=_nodal_connec_index->begin();
6198 MCAuto<DataArrayInt> ret(DataArrayInt::New()); ret->alloc(0,1);
6199 for(const int *w=begin;w!=end;w++)
6200 if((INTERP_KERNEL::NormalizedCellType)conn[connIndex[*w]]==type)
6201 ret->pushBackSilent(*w);
6206 * This method makes the assumption that da->getNumberOfTuples()<this->getNumberOfCells(). This method makes the assumption that ids contained in 'da'
6207 * are in [0:getNumberOfCells())
6209 DataArrayInt *MEDCouplingUMesh::convertCellArrayPerGeoType(const DataArrayInt *da) const
6211 checkFullyDefined();
6212 const int *conn=_nodal_connec->begin();
6213 const int *connI=_nodal_connec_index->begin();
6214 int nbOfCells=getNumberOfCells();
6215 std::set<INTERP_KERNEL::NormalizedCellType> types(getAllGeoTypes());
6216 int *tmp=new int[nbOfCells];
6217 for(std::set<INTERP_KERNEL::NormalizedCellType>::const_iterator iter=types.begin();iter!=types.end();iter++)
6220 for(const int *i=connI;i!=connI+nbOfCells;i++)
6221 if((INTERP_KERNEL::NormalizedCellType)conn[*i]==(*iter))
6222 tmp[std::distance(connI,i)]=j++;
6224 DataArrayInt *ret=DataArrayInt::New();
6225 ret->alloc(da->getNumberOfTuples(),da->getNumberOfComponents());
6226 ret->copyStringInfoFrom(*da);
6227 int *retPtr=ret->getPointer();
6228 const int *daPtr=da->begin();
6229 int nbOfElems=da->getNbOfElems();
6230 for(int k=0;k<nbOfElems;k++)
6231 retPtr[k]=tmp[daPtr[k]];
6237 * This method reduced number of cells of this by keeping cells whose type is different from 'type' and if type=='type'
6238 * This method \b works \b for mesh sorted by type.
6239 * cells whose ids is in 'idsPerGeoType' array.
6240 * This method conserves coords and name of mesh.
6242 MEDCouplingUMesh *MEDCouplingUMesh::keepSpecifiedCells(INTERP_KERNEL::NormalizedCellType type, const int *idsPerGeoTypeBg, const int *idsPerGeoTypeEnd) const
6244 std::vector<int> code=getDistributionOfTypes();
6245 std::size_t nOfTypesInThis=code.size()/3;
6246 int sz=0,szOfType=0;
6247 for(std::size_t i=0;i<nOfTypesInThis;i++)
6252 szOfType=code[3*i+1];
6254 for(const int *work=idsPerGeoTypeBg;work!=idsPerGeoTypeEnd;work++)
6255 if(*work<0 || *work>=szOfType)
6257 std::ostringstream oss; oss << "MEDCouplingUMesh::keepSpecifiedCells : Request on type " << type << " at place #" << std::distance(idsPerGeoTypeBg,work) << " value " << *work;
6258 oss << ". It should be in [0," << szOfType << ") !";
6259 throw INTERP_KERNEL::Exception(oss.str());
6261 MCAuto<DataArrayInt> idsTokeep=DataArrayInt::New(); idsTokeep->alloc(sz+(int)std::distance(idsPerGeoTypeBg,idsPerGeoTypeEnd),1);
6262 int *idsPtr=idsTokeep->getPointer();
6264 for(std::size_t i=0;i<nOfTypesInThis;i++)
6267 for(int j=0;j<code[3*i+1];j++)
6270 idsPtr=std::transform(idsPerGeoTypeBg,idsPerGeoTypeEnd,idsPtr,std::bind2nd(std::plus<int>(),offset));
6271 offset+=code[3*i+1];
6273 MCAuto<MEDCouplingUMesh> ret=static_cast<MEDCouplingUMesh *>(buildPartOfMySelf(idsTokeep->begin(),idsTokeep->end(),true));
6274 ret->copyTinyInfoFrom(this);
6279 * This method returns a vector of size 'this->getNumberOfCells()'.
6280 * This method retrieves for each cell in \a this if it is linear (false) or quadratic(true).
6282 std::vector<bool> MEDCouplingUMesh::getQuadraticStatus() const
6284 int ncell=getNumberOfCells();
6285 std::vector<bool> ret(ncell);
6286 const int *cI=getNodalConnectivityIndex()->begin();
6287 const int *c=getNodalConnectivity()->begin();
6288 for(int i=0;i<ncell;i++)
6290 INTERP_KERNEL::NormalizedCellType typ=(INTERP_KERNEL::NormalizedCellType)c[cI[i]];
6291 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(typ);
6292 ret[i]=cm.isQuadratic();
6298 * Returns a newly created mesh (with ref count ==1) that contains merge of \a this and \a other.
6300 MEDCouplingMesh *MEDCouplingUMesh::mergeMyselfWith(const MEDCouplingMesh *other) const
6302 if(other->getType()!=UNSTRUCTURED)
6303 throw INTERP_KERNEL::Exception("Merge of umesh only available with umesh each other !");
6304 const MEDCouplingUMesh *otherC=static_cast<const MEDCouplingUMesh *>(other);
6305 return MergeUMeshes(this,otherC);
6309 * Returns a new DataArrayDouble holding barycenters of all cells. The barycenter is
6310 * computed by averaging coordinates of cell nodes, so this method is not a right
6311 * choice for degnerated meshes (not well oriented, cells with measure close to zero).
6312 * \return DataArrayDouble * - a new instance of DataArrayDouble, of size \a
6313 * this->getNumberOfCells() tuples per \a this->getSpaceDimension()
6314 * components. The caller is to delete this array using decrRef() as it is
6316 * \throw If the coordinates array is not set.
6317 * \throw If the nodal connectivity of cells is not defined.
6318 * \sa MEDCouplingUMesh::computeIsoBarycenterOfNodesPerCell
6320 DataArrayDouble *MEDCouplingUMesh::computeCellCenterOfMass() const
6322 MCAuto<DataArrayDouble> ret=DataArrayDouble::New();
6323 int spaceDim=getSpaceDimension();
6324 int nbOfCells=getNumberOfCells();
6325 ret->alloc(nbOfCells,spaceDim);
6326 ret->copyStringInfoFrom(*getCoords());
6327 double *ptToFill=ret->getPointer();
6328 const int *nodal=_nodal_connec->begin();
6329 const int *nodalI=_nodal_connec_index->begin();
6330 const double *coor=_coords->begin();
6331 for(int i=0;i<nbOfCells;i++)
6333 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)nodal[nodalI[i]];
6334 INTERP_KERNEL::computeBarycenter2<int,INTERP_KERNEL::ALL_C_MODE>(type,nodal+nodalI[i]+1,nodalI[i+1]-nodalI[i]-1,coor,spaceDim,ptToFill);
6341 * This method computes for each cell in \a this, the location of the iso barycenter of nodes constituting
6342 * the cell. Contrary to badly named MEDCouplingUMesh::computeCellCenterOfMass method that returns the center of inertia of the
6344 * \return a newly allocated DataArrayDouble instance that the caller has to deal with. The returned
6345 * DataArrayDouble instance will have \c this->getNumberOfCells() tuples and \c this->getSpaceDimension() components.
6347 * \sa MEDCouplingUMesh::computeCellCenterOfMass
6348 * \throw If \a this is not fully defined (coordinates and connectivity)
6349 * \throw If there is presence in nodal connectivity in \a this of node ids not in [0, \c this->getNumberOfNodes() )
6351 DataArrayDouble *MEDCouplingUMesh::computeIsoBarycenterOfNodesPerCell() const
6353 checkFullyDefined();
6354 MCAuto<DataArrayDouble> ret=DataArrayDouble::New();
6355 int spaceDim=getSpaceDimension();
6356 int nbOfCells=getNumberOfCells();
6357 int nbOfNodes=getNumberOfNodes();
6358 ret->alloc(nbOfCells,spaceDim);
6359 double *ptToFill=ret->getPointer();
6360 const int *nodal=_nodal_connec->begin();
6361 const int *nodalI=_nodal_connec_index->begin();
6362 const double *coor=_coords->begin();
6363 for(int i=0;i<nbOfCells;i++,ptToFill+=spaceDim)
6365 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)nodal[nodalI[i]];
6366 std::fill(ptToFill,ptToFill+spaceDim,0.);
6367 if(type!=INTERP_KERNEL::NORM_POLYHED)
6369 for(const int *conn=nodal+nodalI[i]+1;conn!=nodal+nodalI[i+1];conn++)
6371 if(*conn>=0 && *conn<nbOfNodes)
6372 std::transform(coor+spaceDim*conn[0],coor+spaceDim*(conn[0]+1),ptToFill,ptToFill,std::plus<double>());
6375 std::ostringstream oss; oss << "MEDCouplingUMesh::computeIsoBarycenterOfNodesPerCell : on cell #" << i << " presence of nodeId #" << *conn << " should be in [0," << nbOfNodes << ") !";
6376 throw INTERP_KERNEL::Exception(oss.str());
6379 int nbOfNodesInCell=nodalI[i+1]-nodalI[i]-1;
6380 if(nbOfNodesInCell>0)
6381 std::transform(ptToFill,ptToFill+spaceDim,ptToFill,std::bind2nd(std::multiplies<double>(),1./(double)nbOfNodesInCell));
6384 std::ostringstream oss; oss << "MEDCouplingUMesh::computeIsoBarycenterOfNodesPerCell : on cell #" << i << " presence of cell with no nodes !";
6385 throw INTERP_KERNEL::Exception(oss.str());
6390 std::set<int> s(nodal+nodalI[i]+1,nodal+nodalI[i+1]);
6392 for(std::set<int>::const_iterator it=s.begin();it!=s.end();it++)
6394 if(*it>=0 && *it<nbOfNodes)
6395 std::transform(coor+spaceDim*(*it),coor+spaceDim*((*it)+1),ptToFill,ptToFill,std::plus<double>());
6398 std::ostringstream oss; oss << "MEDCouplingUMesh::computeIsoBarycenterOfNodesPerCell : on cell polyhedron cell #" << i << " presence of nodeId #" << *it << " should be in [0," << nbOfNodes << ") !";
6399 throw INTERP_KERNEL::Exception(oss.str());
6403 std::transform(ptToFill,ptToFill+spaceDim,ptToFill,std::bind2nd(std::multiplies<double>(),1./(double)s.size()));
6406 std::ostringstream oss; oss << "MEDCouplingUMesh::computeIsoBarycenterOfNodesPerCell : on polyhedron cell #" << i << " there are no nodes !";
6407 throw INTERP_KERNEL::Exception(oss.str());
6415 * Returns a new DataArrayDouble holding barycenters of specified cells. The
6416 * barycenter is computed by averaging coordinates of cell nodes. The cells to treat
6417 * are specified via an array of cell ids.
6418 * \warning Validity of the specified cell ids is not checked!
6419 * Valid range is [ 0, \a this->getNumberOfCells() ).
6420 * \param [in] begin - an array of cell ids of interest.
6421 * \param [in] end - the end of \a begin, i.e. a pointer to its (last+1)-th element.
6422 * \return DataArrayDouble * - a new instance of DataArrayDouble, of size ( \a
6423 * end - \a begin ) tuples per \a this->getSpaceDimension() components. The
6424 * caller is to delete this array using decrRef() as it is no more needed.
6425 * \throw If the coordinates array is not set.
6426 * \throw If the nodal connectivity of cells is not defined.
6428 * \if ENABLE_EXAMPLES
6429 * \ref cpp_mcumesh_getPartBarycenterAndOwner "Here is a C++ example".<br>
6430 * \ref py_mcumesh_getPartBarycenterAndOwner "Here is a Python example".
6433 DataArrayDouble *MEDCouplingUMesh::getPartBarycenterAndOwner(const int *begin, const int *end) const
6435 DataArrayDouble *ret=DataArrayDouble::New();
6436 int spaceDim=getSpaceDimension();
6437 int nbOfTuple=(int)std::distance(begin,end);
6438 ret->alloc(nbOfTuple,spaceDim);
6439 double *ptToFill=ret->getPointer();
6440 double *tmp=new double[spaceDim];
6441 const int *nodal=_nodal_connec->begin();
6442 const int *nodalI=_nodal_connec_index->begin();
6443 const double *coor=_coords->begin();
6444 for(const int *w=begin;w!=end;w++)
6446 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)nodal[nodalI[*w]];
6447 INTERP_KERNEL::computeBarycenter2<int,INTERP_KERNEL::ALL_C_MODE>(type,nodal+nodalI[*w]+1,nodalI[*w+1]-nodalI[*w]-1,coor,spaceDim,ptToFill);
6455 * Returns a DataArrayDouble instance giving for each cell in \a this the equation of plane given by "a*X+b*Y+c*Z+d=0".
6456 * So the returned instance will have 4 components and \c this->getNumberOfCells() tuples.
6457 * So this method expects that \a this has a spaceDimension equal to 3 and meshDimension equal to 2.
6458 * The computation of the plane equation is done using each time the 3 first nodes of 2D cells.
6459 * This method is useful to detect 2D cells in 3D space that are not coplanar.
6461 * \return DataArrayDouble * - a new instance of DataArrayDouble having 4 components and a number of tuples equal to number of cells in \a this.
6462 * \throw If spaceDim!=3 or meshDim!=2.
6463 * \throw If connectivity of \a this is invalid.
6464 * \throw If connectivity of a cell in \a this points to an invalid node.
6466 DataArrayDouble *MEDCouplingUMesh::computePlaneEquationOf3DFaces() const
6468 MCAuto<DataArrayDouble> ret(DataArrayDouble::New());
6469 int nbOfCells(getNumberOfCells()),nbOfNodes(getNumberOfNodes());
6470 if(getSpaceDimension()!=3 || getMeshDimension()!=2)
6471 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::computePlaneEquationOf3DFaces : This method must be applied on a mesh having meshDimension equal 2 and a spaceDimension equal to 3 !");
6472 ret->alloc(nbOfCells,4);
6473 double *retPtr(ret->getPointer());
6474 const int *nodal(_nodal_connec->begin()),*nodalI(_nodal_connec_index->begin());
6475 const double *coor(_coords->begin());
6476 for(int i=0;i<nbOfCells;i++,nodalI++,retPtr+=4)
6478 double matrix[16]={0,0,0,1,0,0,0,1,0,0,0,1,1,1,1,0},matrix2[16];
6479 if(nodalI[1]-nodalI[0]>=4)
6481 double aa[3]={coor[nodal[nodalI[0]+1+1]*3+0]-coor[nodal[nodalI[0]+1+0]*3+0],
6482 coor[nodal[nodalI[0]+1+1]*3+1]-coor[nodal[nodalI[0]+1+0]*3+1],
6483 coor[nodal[nodalI[0]+1+1]*3+2]-coor[nodal[nodalI[0]+1+0]*3+2]}
6484 ,bb[3]={coor[nodal[nodalI[0]+1+2]*3+0]-coor[nodal[nodalI[0]+1+0]*3+0],
6485 coor[nodal[nodalI[0]+1+2]*3+1]-coor[nodal[nodalI[0]+1+0]*3+1],
6486 coor[nodal[nodalI[0]+1+2]*3+2]-coor[nodal[nodalI[0]+1+0]*3+2]};
6487 double cc[3]={aa[1]*bb[2]-aa[2]*bb[1],aa[2]*bb[0]-aa[0]*bb[2],aa[0]*bb[1]-aa[1]*bb[0]};
6488 for(int j=0;j<3;j++)
6490 int nodeId(nodal[nodalI[0]+1+j]);
6491 if(nodeId>=0 && nodeId<nbOfNodes)
6492 std::copy(coor+nodeId*3,coor+(nodeId+1)*3,matrix+4*j);
6495 std::ostringstream oss; oss << "MEDCouplingUMesh::computePlaneEquationOf3DFaces : invalid 2D cell #" << i << " ! This cell points to an invalid nodeId : " << nodeId << " !";
6496 throw INTERP_KERNEL::Exception(oss.str());
6499 if(sqrt(cc[0]*cc[0]+cc[1]*cc[1]+cc[2]*cc[2])>1e-7)
6501 INTERP_KERNEL::inverseMatrix(matrix,4,matrix2);
6502 retPtr[0]=matrix2[3]; retPtr[1]=matrix2[7]; retPtr[2]=matrix2[11]; retPtr[3]=matrix2[15];
6506 if(nodalI[1]-nodalI[0]==4)
6508 std::ostringstream oss; oss << "MEDCouplingUMesh::computePlaneEquationOf3DFaces : cell" << i << " : Presence of The 3 colinear points !";
6509 throw INTERP_KERNEL::Exception(oss.str());
6512 double dd[3]={0.,0.,0.};
6513 for(int offset=nodalI[0]+1;offset<nodalI[1];offset++)
6514 std::transform(coor+3*nodal[offset],coor+3*(nodal[offset]+1),dd,dd,std::plus<double>());
6515 int nbOfNodesInCell(nodalI[1]-nodalI[0]-1);
6516 std::transform(dd,dd+3,dd,std::bind2nd(std::multiplies<double>(),1./(double)nbOfNodesInCell));
6517 std::copy(dd,dd+3,matrix+4*2);
6518 INTERP_KERNEL::inverseMatrix(matrix,4,matrix2);
6519 retPtr[0]=matrix2[3]; retPtr[1]=matrix2[7]; retPtr[2]=matrix2[11]; retPtr[3]=matrix2[15];
6524 std::ostringstream oss; oss << "MEDCouplingUMesh::computePlaneEquationOf3DFaces : invalid 2D cell #" << i << " ! Must be constitued by more than 3 nodes !";
6525 throw INTERP_KERNEL::Exception(oss.str());
6532 * This method expects as input a DataArrayDouble non nul instance 'da' that should be allocated. If not an exception is thrown.
6535 MEDCouplingUMesh *MEDCouplingUMesh::Build0DMeshFromCoords(DataArrayDouble *da)
6538 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::Build0DMeshFromCoords : instance of DataArrayDouble must be not null !");
6539 da->checkAllocated();
6540 std::string name(da->getName());
6541 MCAuto<MEDCouplingUMesh> ret(MEDCouplingUMesh::New(name,0));
6543 ret->setName("Mesh");
6545 int nbOfTuples(da->getNumberOfTuples());
6546 MCAuto<DataArrayInt> c(DataArrayInt::New()),cI(DataArrayInt::New());
6547 c->alloc(2*nbOfTuples,1);
6548 cI->alloc(nbOfTuples+1,1);
6549 int *cp(c->getPointer()),*cip(cI->getPointer());
6551 for(int i=0;i<nbOfTuples;i++)
6553 *cp++=INTERP_KERNEL::NORM_POINT1;
6557 ret->setConnectivity(c,cI,true);
6561 MCAuto<MEDCouplingUMesh> MEDCouplingUMesh::Build1DMeshFromCoords(DataArrayDouble *da)
6564 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::Build01MeshFromCoords : instance of DataArrayDouble must be not null !");
6565 da->checkAllocated();
6566 std::string name(da->getName());
6567 MCAuto<MEDCouplingUMesh> ret;
6569 MCAuto<MEDCouplingCMesh> tmp(MEDCouplingCMesh::New());
6570 MCAuto<DataArrayDouble> arr(DataArrayDouble::New());
6571 arr->alloc(da->getNumberOfTuples());
6572 tmp->setCoordsAt(0,arr);
6573 ret=tmp->buildUnstructured();
6577 ret->setName("Mesh");
6584 * Creates a new MEDCouplingUMesh by concatenating two given meshes of the same dimension.
6585 * Cells and nodes of
6586 * the first mesh precede cells and nodes of the second mesh within the result mesh.
6587 * \param [in] mesh1 - the first mesh.
6588 * \param [in] mesh2 - the second mesh.
6589 * \return MEDCouplingUMesh * - the result mesh. It is a new instance of
6590 * MEDCouplingUMesh. The caller is to delete this mesh using decrRef() as it
6591 * is no more needed.
6592 * \throw If \a mesh1 == NULL or \a mesh2 == NULL.
6593 * \throw If the coordinates array is not set in none of the meshes.
6594 * \throw If \a mesh1->getMeshDimension() < 0 or \a mesh2->getMeshDimension() < 0.
6595 * \throw If \a mesh1->getMeshDimension() != \a mesh2->getMeshDimension().
6597 MEDCouplingUMesh *MEDCouplingUMesh::MergeUMeshes(const MEDCouplingUMesh *mesh1, const MEDCouplingUMesh *mesh2)
6599 std::vector<const MEDCouplingUMesh *> tmp(2);
6600 tmp[0]=const_cast<MEDCouplingUMesh *>(mesh1); tmp[1]=const_cast<MEDCouplingUMesh *>(mesh2);
6601 return MergeUMeshes(tmp);
6605 * Creates a new MEDCouplingUMesh by concatenating all given meshes of the same dimension.
6606 * Cells and nodes of
6607 * the *i*-th mesh precede cells and nodes of the (*i*+1)-th mesh within the result mesh.
6608 * \param [in] a - a vector of meshes (MEDCouplingUMesh) to concatenate.
6609 * \return MEDCouplingUMesh * - the result mesh. It is a new instance of
6610 * MEDCouplingUMesh. The caller is to delete this mesh using decrRef() as it
6611 * is no more needed.
6612 * \throw If \a a.size() == 0.
6613 * \throw If \a a[ *i* ] == NULL.
6614 * \throw If the coordinates array is not set in none of the meshes.
6615 * \throw If \a a[ *i* ]->getMeshDimension() < 0.
6616 * \throw If the meshes in \a a are of different dimension (getMeshDimension()).
6618 MEDCouplingUMesh *MEDCouplingUMesh::MergeUMeshes(const std::vector<const MEDCouplingUMesh *>& a)
6620 std::size_t sz=a.size();
6622 return MergeUMeshesLL(a);
6623 for(std::size_t ii=0;ii<sz;ii++)
6626 std::ostringstream oss; oss << "MEDCouplingUMesh::MergeUMeshes : item #" << ii << " in input array of size "<< sz << " is empty !";
6627 throw INTERP_KERNEL::Exception(oss.str());
6629 std::vector< MCAuto<MEDCouplingUMesh> > bb(sz);
6630 std::vector< const MEDCouplingUMesh * > aa(sz);
6632 for(std::size_t i=0;i<sz && spaceDim==-3;i++)
6634 const MEDCouplingUMesh *cur=a[i];
6635 const DataArrayDouble *coo=cur->getCoords();
6637 spaceDim=coo->getNumberOfComponents();
6640 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::MergeUMeshes : no spaceDim specified ! unable to perform merge !");
6641 for(std::size_t i=0;i<sz;i++)
6643 bb[i]=a[i]->buildSetInstanceFromThis(spaceDim);
6646 return MergeUMeshesLL(aa);
6650 * Creates a new MEDCouplingUMesh by concatenating cells of two given meshes of same
6651 * dimension and sharing the node coordinates array.
6652 * All cells of the first mesh precede all cells of the second mesh
6653 * within the result mesh.
6654 * \param [in] mesh1 - the first mesh.
6655 * \param [in] mesh2 - the second mesh.
6656 * \return MEDCouplingUMesh * - the result mesh. It is a new instance of
6657 * MEDCouplingUMesh. The caller is to delete this mesh using decrRef() as it
6658 * is no more needed.
6659 * \throw If \a mesh1 == NULL or \a mesh2 == NULL.
6660 * \throw If the meshes do not share the node coordinates array.
6661 * \throw If \a mesh1->getMeshDimension() < 0 or \a mesh2->getMeshDimension() < 0.
6662 * \throw If \a mesh1->getMeshDimension() != \a mesh2->getMeshDimension().
6664 MEDCouplingUMesh *MEDCouplingUMesh::MergeUMeshesOnSameCoords(const MEDCouplingUMesh *mesh1, const MEDCouplingUMesh *mesh2)
6666 std::vector<const MEDCouplingUMesh *> tmp(2);
6667 tmp[0]=mesh1; tmp[1]=mesh2;
6668 return MergeUMeshesOnSameCoords(tmp);
6672 * Creates a new MEDCouplingUMesh by concatenating cells of all given meshes of same
6673 * dimension and sharing the node coordinates array.
6674 * All cells of the *i*-th mesh precede all cells of the
6675 * (*i*+1)-th mesh within the result mesh.
6676 * \param [in] meshes - a vector of meshes (MEDCouplingUMesh) to concatenate.
6677 * \return MEDCouplingUMesh * - the result mesh. It is a new instance of
6678 * MEDCouplingUMesh. The caller is to delete this mesh using decrRef() as it
6679 * is no more needed.
6680 * \throw If \a a.size() == 0.
6681 * \throw If \a a[ *i* ] == NULL.
6682 * \throw If the meshes do not share the node coordinates array.
6683 * \throw If \a a[ *i* ]->getMeshDimension() < 0.
6684 * \throw If the meshes in \a a are of different dimension (getMeshDimension()).
6686 MEDCouplingUMesh *MEDCouplingUMesh::MergeUMeshesOnSameCoords(const std::vector<const MEDCouplingUMesh *>& meshes)
6689 throw INTERP_KERNEL::Exception("meshes input parameter is expected to be non empty.");
6690 for(std::size_t ii=0;ii<meshes.size();ii++)
6693 std::ostringstream oss; oss << "MEDCouplingUMesh::MergeUMeshesOnSameCoords : item #" << ii << " in input array of size "<< meshes.size() << " is empty !";
6694 throw INTERP_KERNEL::Exception(oss.str());
6696 const DataArrayDouble *coords=meshes.front()->getCoords();
6697 int meshDim=meshes.front()->getMeshDimension();
6698 std::vector<const MEDCouplingUMesh *>::const_iterator iter=meshes.begin();
6700 int meshIndexLgth=0;
6701 for(;iter!=meshes.end();iter++)
6703 if(coords!=(*iter)->getCoords())
6704 throw INTERP_KERNEL::Exception("meshes does not share the same coords ! Try using tryToShareSameCoords method !");
6705 if(meshDim!=(*iter)->getMeshDimension())
6706 throw INTERP_KERNEL::Exception("Mesh dimensions mismatches, FuseUMeshesOnSameCoords impossible !");
6707 meshLgth+=(*iter)->getNodalConnectivityArrayLen();
6708 meshIndexLgth+=(*iter)->getNumberOfCells();
6710 MCAuto<DataArrayInt> nodal=DataArrayInt::New();
6711 nodal->alloc(meshLgth,1);
6712 int *nodalPtr=nodal->getPointer();
6713 MCAuto<DataArrayInt> nodalIndex=DataArrayInt::New();
6714 nodalIndex->alloc(meshIndexLgth+1,1);
6715 int *nodalIndexPtr=nodalIndex->getPointer();
6717 for(iter=meshes.begin();iter!=meshes.end();iter++)
6719 const int *nod=(*iter)->getNodalConnectivity()->begin();
6720 const int *index=(*iter)->getNodalConnectivityIndex()->begin();
6721 int nbOfCells=(*iter)->getNumberOfCells();
6722 int meshLgth2=(*iter)->getNodalConnectivityArrayLen();
6723 nodalPtr=std::copy(nod,nod+meshLgth2,nodalPtr);
6724 if(iter!=meshes.begin())
6725 nodalIndexPtr=std::transform(index+1,index+nbOfCells+1,nodalIndexPtr,std::bind2nd(std::plus<int>(),offset));
6727 nodalIndexPtr=std::copy(index,index+nbOfCells+1,nodalIndexPtr);
6730 MEDCouplingUMesh *ret=MEDCouplingUMesh::New();
6731 ret->setName("merge");
6732 ret->setMeshDimension(meshDim);
6733 ret->setConnectivity(nodal,nodalIndex,true);
6734 ret->setCoords(coords);
6739 * Creates a new MEDCouplingUMesh by concatenating cells of all given meshes of same
6740 * dimension and sharing the node coordinates array. Cells of the *i*-th mesh precede
6741 * cells of the (*i*+1)-th mesh within the result mesh. Duplicates of cells are
6742 * removed from \a this mesh and arrays mapping between new and old cell ids in "Old to
6743 * New" mode are returned for each input mesh.
6744 * \param [in] meshes - a vector of meshes (MEDCouplingUMesh) to concatenate.
6745 * \param [in] compType - specifies a cell comparison technique. For meaning of its
6746 * valid values [0,1,2], see zipConnectivityTraducer().
6747 * \param [in,out] corr - an array of DataArrayInt, of the same size as \a
6748 * meshes. The *i*-th array describes cell ids mapping for \a meshes[ *i* ]
6749 * mesh. The caller is to delete each of the arrays using decrRef() as it is
6751 * \return MEDCouplingUMesh * - the result mesh. It is a new instance of
6752 * MEDCouplingUMesh. The caller is to delete this mesh using decrRef() as it
6753 * is no more needed.
6754 * \throw If \a meshes.size() == 0.
6755 * \throw If \a meshes[ *i* ] == NULL.
6756 * \throw If the meshes do not share the node coordinates array.
6757 * \throw If \a meshes[ *i* ]->getMeshDimension() < 0.
6758 * \throw If the \a meshes are of different dimension (getMeshDimension()).
6759 * \throw If the nodal connectivity of cells of any of \a meshes is not defined.
6760 * \throw If the nodal connectivity any of \a meshes includes an invalid id.
6762 MEDCouplingUMesh *MEDCouplingUMesh::FuseUMeshesOnSameCoords(const std::vector<const MEDCouplingUMesh *>& meshes, int compType, std::vector<DataArrayInt *>& corr)
6764 //All checks are delegated to MergeUMeshesOnSameCoords
6765 MCAuto<MEDCouplingUMesh> ret=MergeUMeshesOnSameCoords(meshes);
6766 MCAuto<DataArrayInt> o2n=ret->zipConnectivityTraducer(compType);
6767 corr.resize(meshes.size());
6768 std::size_t nbOfMeshes=meshes.size();
6770 const int *o2nPtr=o2n->begin();
6771 for(std::size_t i=0;i<nbOfMeshes;i++)
6773 DataArrayInt *tmp=DataArrayInt::New();
6774 int curNbOfCells=meshes[i]->getNumberOfCells();
6775 tmp->alloc(curNbOfCells,1);
6776 std::copy(o2nPtr+offset,o2nPtr+offset+curNbOfCells,tmp->getPointer());
6777 offset+=curNbOfCells;
6778 tmp->setName(meshes[i]->getName());
6785 * Makes all given meshes share the nodal connectivity array. The common connectivity
6786 * array is created by concatenating the connectivity arrays of all given meshes. All
6787 * the given meshes must be of the same space dimension but dimension of cells **can
6788 * differ**. This method is particulary useful in MEDLoader context to build a \ref
6789 * MEDCoupling::MEDFileUMesh "MEDFileUMesh" instance that expects that underlying
6790 * MEDCouplingUMesh'es of different dimension share the same nodal connectivity array.
6791 * \param [in,out] meshes - a vector of meshes to update.
6792 * \throw If any of \a meshes is NULL.
6793 * \throw If the coordinates array is not set in any of \a meshes.
6794 * \throw If the nodal connectivity of cells is not defined in any of \a meshes.
6795 * \throw If \a meshes are of different space dimension.
6797 void MEDCouplingUMesh::PutUMeshesOnSameAggregatedCoords(const std::vector<MEDCouplingUMesh *>& meshes)
6799 std::size_t sz=meshes.size();
6802 std::vector< const DataArrayDouble * > coords(meshes.size());
6803 std::vector< const DataArrayDouble * >::iterator it2=coords.begin();
6804 for(std::vector<MEDCouplingUMesh *>::const_iterator it=meshes.begin();it!=meshes.end();it++,it2++)
6808 (*it)->checkConnectivityFullyDefined();
6809 const DataArrayDouble *coo=(*it)->getCoords();
6814 std::ostringstream oss; oss << " MEDCouplingUMesh::PutUMeshesOnSameAggregatedCoords : Item #" << std::distance(meshes.begin(),it) << " inside the vector of length " << meshes.size();
6815 oss << " has no coordinate array defined !";
6816 throw INTERP_KERNEL::Exception(oss.str());
6821 std::ostringstream oss; oss << " MEDCouplingUMesh::PutUMeshesOnSameAggregatedCoords : Item #" << std::distance(meshes.begin(),it) << " inside the vector of length " << meshes.size();
6822 oss << " is null !";
6823 throw INTERP_KERNEL::Exception(oss.str());
6826 MCAuto<DataArrayDouble> res=DataArrayDouble::Aggregate(coords);
6827 std::vector<MEDCouplingUMesh *>::const_iterator it=meshes.begin();
6828 int offset=(*it)->getNumberOfNodes();
6829 (*it++)->setCoords(res);
6830 for(;it!=meshes.end();it++)
6832 int oldNumberOfNodes=(*it)->getNumberOfNodes();
6833 (*it)->setCoords(res);
6834 (*it)->shiftNodeNumbersInConn(offset);
6835 offset+=oldNumberOfNodes;
6840 * Merges nodes coincident with a given precision within all given meshes that share
6841 * the nodal connectivity array. The given meshes **can be of different** mesh
6842 * dimension. This method is particulary useful in MEDLoader context to build a \ref
6843 * MEDCoupling::MEDFileUMesh "MEDFileUMesh" instance that expects that underlying
6844 * MEDCouplingUMesh'es of different dimension share the same nodal connectivity array.
6845 * \param [in,out] meshes - a vector of meshes to update.
6846 * \param [in] eps - the precision used to detect coincident nodes (infinite norm).
6847 * \throw If any of \a meshes is NULL.
6848 * \throw If the \a meshes do not share the same node coordinates array.
6849 * \throw If the nodal connectivity of cells is not defined in any of \a meshes.
6851 void MEDCouplingUMesh::MergeNodesOnUMeshesSharingSameCoords(const std::vector<MEDCouplingUMesh *>& meshes, double eps)
6855 std::set<const DataArrayDouble *> s;
6856 for(std::vector<MEDCouplingUMesh *>::const_iterator it=meshes.begin();it!=meshes.end();it++)
6859 s.insert((*it)->getCoords());
6862 std::ostringstream oss; oss << "MEDCouplingUMesh::MergeNodesOnUMeshesSharingSameCoords : In input vector of unstructured meshes of size " << meshes.size() << " the element #" << std::distance(meshes.begin(),it) << " is null !";
6863 throw INTERP_KERNEL::Exception(oss.str());
6868 std::ostringstream oss; oss << "MEDCouplingUMesh::MergeNodesOnUMeshesSharingSameCoords : In input vector of unstructured meshes of size " << meshes.size() << ", it appears that they do not share the same instance of DataArrayDouble for coordiantes ! tryToShareSameCoordsPermute method can help to reach that !";
6869 throw INTERP_KERNEL::Exception(oss.str());
6871 const DataArrayDouble *coo=*(s.begin());
6875 DataArrayInt *comm,*commI;
6876 coo->findCommonTuples(eps,-1,comm,commI);
6877 MCAuto<DataArrayInt> tmp1(comm),tmp2(commI);
6878 int oldNbOfNodes=coo->getNumberOfTuples();
6880 MCAuto<DataArrayInt> o2n=DataArrayInt::ConvertIndexArrayToO2N(oldNbOfNodes,comm->begin(),commI->begin(),commI->end(),newNbOfNodes);
6881 if(oldNbOfNodes==newNbOfNodes)
6883 MCAuto<DataArrayDouble> newCoords=coo->renumberAndReduce(o2n->begin(),newNbOfNodes);
6884 for(std::vector<MEDCouplingUMesh *>::const_iterator it=meshes.begin();it!=meshes.end();it++)
6886 (*it)->renumberNodesInConn(o2n->begin());
6887 (*it)->setCoords(newCoords);
6893 * This static operates only for coords in 3D. The polygon is specfied by its connectivity nodes in [ \a begin , \a end ).
6895 bool MEDCouplingUMesh::IsPolygonWellOriented(bool isQuadratic, const double *vec, const int *begin, const int *end, const double *coords)
6898 double v[3]={0.,0.,0.};
6899 std::size_t sz=std::distance(begin,end);
6904 v[0]+=coords[3*begin[i]+1]*coords[3*begin[(i+1)%sz]+2]-coords[3*begin[i]+2]*coords[3*begin[(i+1)%sz]+1];
6905 v[1]+=coords[3*begin[i]+2]*coords[3*begin[(i+1)%sz]]-coords[3*begin[i]]*coords[3*begin[(i+1)%sz]+2];
6906 v[2]+=coords[3*begin[i]]*coords[3*begin[(i+1)%sz]+1]-coords[3*begin[i]+1]*coords[3*begin[(i+1)%sz]];
6908 double ret = vec[0]*v[0]+vec[1]*v[1]+vec[2]*v[2];
6910 // Try using quadratic points if standard points are degenerated (for example a QPOLYG with two
6911 // SEG3 forming a circle):
6912 if (fabs(ret) < INTERP_KERNEL::DEFAULT_ABS_TOL && isQuadratic)
6914 v[0] = 0.0; v[1] = 0.0; v[2] = 0.0;
6915 for(std::size_t j=0;j<sz;j++)
6917 if (j%2) // current point i is quadratic, next point i+1 is standard
6920 ip1 = (j+1)%sz; // ip1 = "i+1"
6922 else // current point i is standard, next point i+1 is quadratic
6927 v[0]+=coords[3*begin[i]+1]*coords[3*begin[ip1]+2]-coords[3*begin[i]+2]*coords[3*begin[ip1]+1];
6928 v[1]+=coords[3*begin[i]+2]*coords[3*begin[ip1]]-coords[3*begin[i]]*coords[3*begin[ip1]+2];
6929 v[2]+=coords[3*begin[i]]*coords[3*begin[ip1]+1]-coords[3*begin[i]+1]*coords[3*begin[ip1]];
6931 ret = vec[0]*v[0]+vec[1]*v[1]+vec[2]*v[2];
6937 * The polyhedron is specfied by its connectivity nodes in [ \a begin , \a end ).
6939 bool MEDCouplingUMesh::IsPolyhedronWellOriented(const int *begin, const int *end, const double *coords)
6941 std::vector<std::pair<int,int> > edges;
6942 std::size_t nbOfFaces=std::count(begin,end,-1)+1;
6943 const int *bgFace=begin;
6944 for(std::size_t i=0;i<nbOfFaces;i++)
6946 const int *endFace=std::find(bgFace+1,end,-1);
6947 std::size_t nbOfEdgesInFace=std::distance(bgFace,endFace);
6948 for(std::size_t j=0;j<nbOfEdgesInFace;j++)
6950 std::pair<int,int> p1(bgFace[j],bgFace[(j+1)%nbOfEdgesInFace]);
6951 if(std::find(edges.begin(),edges.end(),p1)!=edges.end())
6953 edges.push_back(p1);
6957 return INTERP_KERNEL::calculateVolumeForPolyh2<int,INTERP_KERNEL::ALL_C_MODE>(begin,(int)std::distance(begin,end),coords)>-EPS_FOR_POLYH_ORIENTATION;
6961 * The 3D extruded static cell (PENTA6,HEXA8,HEXAGP12...) its connectivity nodes in [ \a begin , \a end ).
6963 bool MEDCouplingUMesh::Is3DExtrudedStaticCellWellOriented(const int *begin, const int *end, const double *coords)
6965 double vec0[3],vec1[3];
6966 std::size_t sz=std::distance(begin,end);
6968 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::Is3DExtrudedStaticCellWellOriented : the length of nodal connectivity of extruded cell is not even !");
6969 int nbOfNodes=(int)sz/2;
6970 INTERP_KERNEL::areaVectorOfPolygon<int,INTERP_KERNEL::ALL_C_MODE>(begin,nbOfNodes,coords,vec0);
6971 const double *pt0=coords+3*begin[0];
6972 const double *pt1=coords+3*begin[nbOfNodes];
6973 vec1[0]=pt1[0]-pt0[0]; vec1[1]=pt1[1]-pt0[1]; vec1[2]=pt1[2]-pt0[2];
6974 return (vec0[0]*vec1[0]+vec0[1]*vec1[1]+vec0[2]*vec1[2])<0.;
6977 void MEDCouplingUMesh::CorrectExtrudedStaticCell(int *begin, int *end)
6979 std::size_t sz=std::distance(begin,end);
6980 INTERP_KERNEL::AutoPtr<int> tmp=new int[sz];
6981 std::size_t nbOfNodes(sz/2);
6982 std::copy(begin,end,(int *)tmp);
6983 for(std::size_t j=1;j<nbOfNodes;j++)
6985 begin[j]=tmp[nbOfNodes-j];
6986 begin[j+nbOfNodes]=tmp[nbOfNodes+nbOfNodes-j];
6990 bool MEDCouplingUMesh::IsTetra4WellOriented(const int *begin, const int *end, const double *coords)
6992 std::size_t sz=std::distance(begin,end);
6994 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::IsTetra4WellOriented : Tetra4 cell with not 4 nodes ! Call checkConsistency !");
6995 double vec0[3],vec1[3];
6996 const double *pt0=coords+3*begin[0],*pt1=coords+3*begin[1],*pt2=coords+3*begin[2],*pt3=coords+3*begin[3];
6997 vec0[0]=pt1[0]-pt0[0]; vec0[1]=pt1[1]-pt0[1]; vec0[2]=pt1[2]-pt0[2]; vec1[0]=pt2[0]-pt0[0]; vec1[1]=pt2[1]-pt0[1]; vec1[2]=pt2[2]-pt0[2];
6998 return ((vec0[1]*vec1[2]-vec0[2]*vec1[1])*(pt3[0]-pt0[0])+(vec0[2]*vec1[0]-vec0[0]*vec1[2])*(pt3[1]-pt0[1])+(vec0[0]*vec1[1]-vec0[1]*vec1[0])*(pt3[2]-pt0[2]))<0;
7001 bool MEDCouplingUMesh::IsPyra5WellOriented(const int *begin, const int *end, const double *coords)
7003 std::size_t sz=std::distance(begin,end);
7005 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::IsPyra5WellOriented : Pyra5 cell with not 5 nodes ! Call checkConsistency !");
7007 INTERP_KERNEL::areaVectorOfPolygon<int,INTERP_KERNEL::ALL_C_MODE>(begin,4,coords,vec0);
7008 const double *pt0=coords+3*begin[0],*pt1=coords+3*begin[4];
7009 return (vec0[0]*(pt1[0]-pt0[0])+vec0[1]*(pt1[1]-pt0[1])+vec0[2]*(pt1[2]-pt0[2]))<0.;
7013 * This method performs a simplyfication of a single polyedron cell. To do that each face of cell whose connectivity is defined by [ \b begin , \b end )
7014 * is compared with the others in order to find faces in the same plane (with approx of eps). If any, the cells are grouped together and projected to
7017 * \param [in] eps is a relative precision that allows to establish if some 3D plane are coplanar or not.
7018 * \param [in] coords the coordinates with nb of components exactly equal to 3
7019 * \param [in] begin begin of the nodal connectivity (geometric type included) of a single polyhedron cell
7020 * \param [in] end end of nodal connectivity of a single polyhedron cell (excluded)
7021 * \param [out] res the result is put at the end of the vector without any alteration of the data.
7023 void MEDCouplingUMesh::SimplifyPolyhedronCell(double eps, const DataArrayDouble *coords, const int *begin, const int *end, DataArrayInt *res)
7025 int nbFaces=std::count(begin+1,end,-1)+1;
7026 MCAuto<DataArrayDouble> v=DataArrayDouble::New(); v->alloc(nbFaces,3);
7027 double *vPtr=v->getPointer();
7028 MCAuto<DataArrayDouble> p=DataArrayDouble::New(); p->alloc(nbFaces,1);
7029 double *pPtr=p->getPointer();
7030 const int *stFaceConn=begin+1;
7031 for(int i=0;i<nbFaces;i++,vPtr+=3,pPtr++)
7033 const int *endFaceConn=std::find(stFaceConn,end,-1);
7034 ComputeVecAndPtOfFace(eps,coords->begin(),stFaceConn,endFaceConn,vPtr,pPtr);
7035 stFaceConn=endFaceConn+1;
7037 pPtr=p->getPointer(); vPtr=v->getPointer();
7038 DataArrayInt *comm1=0,*commI1=0;
7039 v->findCommonTuples(eps,-1,comm1,commI1);
7040 MCAuto<DataArrayInt> comm1Auto(comm1),commI1Auto(commI1);
7041 const int *comm1Ptr=comm1->begin();
7042 const int *commI1Ptr=commI1->begin();
7043 int nbOfGrps1=commI1Auto->getNumberOfTuples()-1;
7044 res->pushBackSilent((int)INTERP_KERNEL::NORM_POLYHED);
7046 MCAuto<MEDCouplingUMesh> mm=MEDCouplingUMesh::New("",3);
7047 mm->setCoords(const_cast<DataArrayDouble *>(coords)); mm->allocateCells(1); mm->insertNextCell(INTERP_KERNEL::NORM_POLYHED,(int)std::distance(begin+1,end),begin+1);
7048 mm->finishInsertingCells();
7050 for(int i=0;i<nbOfGrps1;i++)
7052 int vecId=comm1Ptr[commI1Ptr[i]];
7053 MCAuto<DataArrayDouble> tmpgrp2=p->selectByTupleId(comm1Ptr+commI1Ptr[i],comm1Ptr+commI1Ptr[i+1]);
7054 DataArrayInt *comm2=0,*commI2=0;
7055 tmpgrp2->findCommonTuples(eps,-1,comm2,commI2);
7056 MCAuto<DataArrayInt> comm2Auto(comm2),commI2Auto(commI2);
7057 const int *comm2Ptr=comm2->begin();
7058 const int *commI2Ptr=commI2->begin();
7059 int nbOfGrps2=commI2Auto->getNumberOfTuples()-1;
7060 for(int j=0;j<nbOfGrps2;j++)
7062 if(commI2Ptr[j+1]-commI2Ptr[j]<=1)
7064 res->insertAtTheEnd(begin,end);
7065 res->pushBackSilent(-1);
7069 int pointId=comm1Ptr[commI1Ptr[i]+comm2Ptr[commI2Ptr[j]]];
7070 MCAuto<DataArrayInt> ids2=comm2->selectByTupleIdSafeSlice(commI2Ptr[j],commI2Ptr[j+1],1);
7071 ids2->transformWithIndArr(comm1Ptr+commI1Ptr[i],comm1Ptr+commI1Ptr[i+1]);
7072 DataArrayInt *tmp0=DataArrayInt::New(),*tmp1=DataArrayInt::New(),*tmp2=DataArrayInt::New(),*tmp3=DataArrayInt::New();
7073 MCAuto<MEDCouplingUMesh> mm2=mm->buildDescendingConnectivity(tmp0,tmp1,tmp2,tmp3); tmp0->decrRef(); tmp1->decrRef(); tmp2->decrRef(); tmp3->decrRef();
7074 MCAuto<MEDCouplingUMesh> mm3=static_cast<MEDCouplingUMesh *>(mm2->buildPartOfMySelf(ids2->begin(),ids2->end(),true));
7075 MCAuto<DataArrayInt> idsNodeTmp=mm3->zipCoordsTraducer();
7076 MCAuto<DataArrayInt> idsNode=idsNodeTmp->invertArrayO2N2N2O(mm3->getNumberOfNodes());
7077 const int *idsNodePtr=idsNode->begin();
7078 double center[3]; center[0]=pPtr[pointId]*vPtr[3*vecId]; center[1]=pPtr[pointId]*vPtr[3*vecId+1]; center[2]=pPtr[pointId]*vPtr[3*vecId+2];
7079 double vec[3]; vec[0]=vPtr[3*vecId+1]; vec[1]=-vPtr[3*vecId]; vec[2]=0.;
7080 double norm=vec[0]*vec[0]+vec[1]*vec[1]+vec[2]*vec[2];
7081 if(std::abs(norm)>eps)
7083 double angle=INTERP_KERNEL::EdgeArcCircle::SafeAsin(norm);
7084 mm3->rotate(center,vec,angle);
7086 mm3->changeSpaceDimension(2);
7087 MCAuto<MEDCouplingUMesh> mm4=mm3->buildSpreadZonesWithPoly();
7088 const int *conn4=mm4->getNodalConnectivity()->begin();
7089 const int *connI4=mm4->getNodalConnectivityIndex()->begin();
7090 int nbOfCells=mm4->getNumberOfCells();
7091 for(int k=0;k<nbOfCells;k++)
7094 for(const int *work=conn4+connI4[k]+1;work!=conn4+connI4[k+1];work++,l++)
7095 res->pushBackSilent(idsNodePtr[*work]);
7096 res->pushBackSilent(-1);
7101 res->popBackSilent();
7105 * This method computes the normalized vector of the plane and the pos of the point belonging to the plane and the line defined by the vector going
7106 * through origin. The plane is defined by its nodal connectivity [ \b begin, \b end ).
7108 * \param [in] eps below that value the dot product of 2 vectors is considered as colinears
7109 * \param [in] coords coordinates expected to have 3 components.
7110 * \param [in] begin start of the nodal connectivity of the face.
7111 * \param [in] end end of the nodal connectivity (excluded) of the face.
7112 * \param [out] v the normalized vector of size 3
7113 * \param [out] p the pos of plane
7115 void MEDCouplingUMesh::ComputeVecAndPtOfFace(double eps, const double *coords, const int *begin, const int *end, double *v, double *p)
7117 std::size_t nbPoints=std::distance(begin,end);
7119 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ComputeVecAndPtOfFace : < of 3 points in face ! not able to find a plane on that face !");
7120 double vec[3]={0.,0.,0.};
7122 bool refFound=false;
7123 for(;j<nbPoints-1 && !refFound;j++)
7125 vec[0]=coords[3*begin[j+1]]-coords[3*begin[j]];
7126 vec[1]=coords[3*begin[j+1]+1]-coords[3*begin[j]+1];
7127 vec[2]=coords[3*begin[j+1]+2]-coords[3*begin[j]+2];
7128 double norm=sqrt(vec[0]*vec[0]+vec[1]*vec[1]+vec[2]*vec[2]);
7132 vec[0]/=norm; vec[1]/=norm; vec[2]/=norm;
7135 for(std::size_t i=j;i<nbPoints-1;i++)
7138 curVec[0]=coords[3*begin[i+1]]-coords[3*begin[i]];
7139 curVec[1]=coords[3*begin[i+1]+1]-coords[3*begin[i]+1];
7140 curVec[2]=coords[3*begin[i+1]+2]-coords[3*begin[i]+2];
7141 double norm=sqrt(curVec[0]*curVec[0]+curVec[1]*curVec[1]+curVec[2]*curVec[2]);
7144 curVec[0]/=norm; curVec[1]/=norm; curVec[2]/=norm;
7145 v[0]=vec[1]*curVec[2]-vec[2]*curVec[1]; v[1]=vec[2]*curVec[0]-vec[0]*curVec[2]; v[2]=vec[0]*curVec[1]-vec[1]*curVec[0];
7146 norm=sqrt(v[0]*v[0]+v[1]*v[1]+v[2]*v[2]);
7149 v[0]/=norm; v[1]/=norm; v[2]/=norm;
7150 *p=v[0]*coords[3*begin[i]]+v[1]*coords[3*begin[i]+1]+v[2]*coords[3*begin[i]+2];
7154 throw INTERP_KERNEL::Exception("Not able to find a normal vector of that 3D face !");
7158 * This method tries to obtain a well oriented polyhedron.
7159 * If the algorithm fails, an exception will be thrown.
7161 void MEDCouplingUMesh::TryToCorrectPolyhedronOrientation(int *begin, int *end, const double *coords)
7163 std::list< std::pair<int,int> > edgesOK,edgesFinished;
7164 std::size_t nbOfFaces=std::count(begin,end,-1)+1;
7165 std::vector<bool> isPerm(nbOfFaces,false);//field on faces False: I don't know, True : oriented
7167 int *bgFace=begin,*endFace=std::find(begin+1,end,-1);
7168 std::size_t nbOfEdgesInFace=std::distance(bgFace,endFace);
7169 for(std::size_t l=0;l<nbOfEdgesInFace;l++) { std::pair<int,int> p1(bgFace[l],bgFace[(l+1)%nbOfEdgesInFace]); edgesOK.push_back(p1); }
7171 while(std::find(isPerm.begin(),isPerm.end(),false)!=isPerm.end())
7174 std::size_t smthChanged=0;
7175 for(std::size_t i=0;i<nbOfFaces;i++)
7177 endFace=std::find(bgFace+1,end,-1);
7178 nbOfEdgesInFace=std::distance(bgFace,endFace);
7182 for(std::size_t j=0;j<nbOfEdgesInFace;j++)
7184 std::pair<int,int> p1(bgFace[j],bgFace[(j+1)%nbOfEdgesInFace]);
7185 std::pair<int,int> p2(p1.second,p1.first);
7186 bool b1=std::find(edgesOK.begin(),edgesOK.end(),p1)!=edgesOK.end();
7187 bool b2=std::find(edgesOK.begin(),edgesOK.end(),p2)!=edgesOK.end();
7188 if(b1 || b2) { b=b2; isPerm[i]=true; smthChanged++; break; }
7193 std::reverse(bgFace+1,endFace);
7194 for(std::size_t j=0;j<nbOfEdgesInFace;j++)
7196 std::pair<int,int> p1(bgFace[j],bgFace[(j+1)%nbOfEdgesInFace]);
7197 std::pair<int,int> p2(p1.second,p1.first);
7198 if(std::find(edgesOK.begin(),edgesOK.end(),p1)!=edgesOK.end())
7199 { std::ostringstream oss; oss << "Face #" << j << " of polyhedron looks bad !"; throw INTERP_KERNEL::Exception(oss.str()); }
7200 if(std::find(edgesFinished.begin(),edgesFinished.end(),p1)!=edgesFinished.end() || std::find(edgesFinished.begin(),edgesFinished.end(),p2)!=edgesFinished.end())
7201 { std::ostringstream oss; oss << "Face #" << j << " of polyhedron looks bad !"; throw INTERP_KERNEL::Exception(oss.str()); }
7202 std::list< std::pair<int,int> >::iterator it=std::find(edgesOK.begin(),edgesOK.end(),p2);
7203 if(it!=edgesOK.end())
7206 edgesFinished.push_back(p1);
7209 edgesOK.push_back(p1);
7216 { throw INTERP_KERNEL::Exception("The polyhedron looks too bad to be repaired !"); }
7218 if(!edgesOK.empty())
7219 { throw INTERP_KERNEL::Exception("The polyhedron looks too bad to be repaired : Some edges are shared only once !"); }
7220 if(INTERP_KERNEL::calculateVolumeForPolyh2<int,INTERP_KERNEL::ALL_C_MODE>(begin,(int)std::distance(begin,end),coords)<-EPS_FOR_POLYH_ORIENTATION)
7221 {//not lucky ! The first face was not correctly oriented : reorient all faces...
7223 for(std::size_t i=0;i<nbOfFaces;i++)
7225 endFace=std::find(bgFace+1,end,-1);
7226 std::reverse(bgFace+1,endFace);
7234 * This method makes the assumption spacedimension == meshdimension == 2.
7235 * This method works only for linear cells.
7237 * \return a newly allocated array containing the connectivity of a polygon type enum included (NORM_POLYGON in pos#0)
7239 DataArrayInt *MEDCouplingUMesh::buildUnionOf2DMesh() const
7241 if(getMeshDimension()!=2 || getSpaceDimension()!=2)
7242 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildUnionOf2DMesh : meshdimension, spacedimension must be equal to 2 !");
7243 MCAuto<MEDCouplingUMesh> skin(computeSkin());
7244 int oldNbOfNodes(skin->getNumberOfNodes());
7245 MCAuto<DataArrayInt> o2n(skin->zipCoordsTraducer());
7246 int nbOfNodesExpected(skin->getNumberOfNodes());
7247 MCAuto<DataArrayInt> n2o(o2n->invertArrayO2N2N2O(oldNbOfNodes));
7248 int nbCells(skin->getNumberOfCells());
7249 if(nbCells==nbOfNodesExpected)
7250 return buildUnionOf2DMeshLinear(skin,n2o);
7251 else if(2*nbCells==nbOfNodesExpected)
7252 return buildUnionOf2DMeshQuadratic(skin,n2o);
7254 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildUnionOf2DMesh : the mesh 2D in input appears to be not in a single part of a 2D mesh !");
7258 * This method makes the assumption spacedimension == meshdimension == 3.
7259 * This method works only for linear cells.
7261 * \return a newly allocated array containing the connectivity of a polygon type enum included (NORM_POLYHED in pos#0)
7263 DataArrayInt *MEDCouplingUMesh::buildUnionOf3DMesh() const
7265 if(getMeshDimension()!=3 || getSpaceDimension()!=3)
7266 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildUnionOf3DMesh : meshdimension, spacedimension must be equal to 2 !");
7267 MCAuto<MEDCouplingUMesh> m=computeSkin();
7268 const int *conn=m->getNodalConnectivity()->begin();
7269 const int *connI=m->getNodalConnectivityIndex()->begin();
7270 int nbOfCells=m->getNumberOfCells();
7271 MCAuto<DataArrayInt> ret=DataArrayInt::New(); ret->alloc(m->getNodalConnectivity()->getNumberOfTuples(),1);
7272 int *work=ret->getPointer(); *work++=INTERP_KERNEL::NORM_POLYHED;
7275 work=std::copy(conn+connI[0]+1,conn+connI[1],work);
7276 for(int i=1;i<nbOfCells;i++)
7279 work=std::copy(conn+connI[i]+1,conn+connI[i+1],work);
7285 * \brief Creates a graph of cell neighbors
7286 * \return MEDCouplingSkyLineArray * - an sky line array the user should delete.
7287 * In the sky line array, graph arcs are stored in terms of (index,value) notation.
7289 * - index: 0 3 5 6 6
7290 * - value: 1 2 3 2 3 3
7291 * means 6 arcs (0,1), (0,2), (0,3), (1,2), (1,3), (2,3)
7292 * Arcs are not doubled but reflexive (1,1) arcs are present for each cell
7294 MEDCouplingSkyLineArray* MEDCouplingUMesh::generateGraph() const
7296 checkConnectivityFullyDefined();
7298 int meshDim = this->getMeshDimension();
7299 MEDCoupling::DataArrayInt* indexr=MEDCoupling::DataArrayInt::New();
7300 MEDCoupling::DataArrayInt* revConn=MEDCoupling::DataArrayInt::New();
7301 this->getReverseNodalConnectivity(revConn,indexr);
7302 const int* indexr_ptr=indexr->begin();
7303 const int* revConn_ptr=revConn->begin();
7305 const MEDCoupling::DataArrayInt* index;
7306 const MEDCoupling::DataArrayInt* conn;
7307 conn=this->getNodalConnectivity(); // it includes a type as the 1st element!!!
7308 index=this->getNodalConnectivityIndex();
7309 int nbCells=this->getNumberOfCells();
7310 const int* index_ptr=index->begin();
7311 const int* conn_ptr=conn->begin();
7313 //creating graph arcs (cell to cell relations)
7314 //arcs are stored in terms of (index,value) notation
7317 // means 6 arcs (0,1), (0,2), (0,3), (1,2), (1,3), (2,3)
7318 // in present version arcs are not doubled but reflexive (1,1) arcs are present for each cell
7320 //warning here one node have less than or equal effective number of cell with it
7321 //but cell could have more than effective nodes
7322 //because other equals nodes in other domain (with other global inode)
7323 std::vector <int> cell2cell_index(nbCells+1,0);
7324 std::vector <int> cell2cell;
7325 cell2cell.reserve(3*nbCells);
7327 for (int icell=0; icell<nbCells;icell++)
7329 std::map<int,int > counter;
7330 for (int iconn=index_ptr[icell]+1; iconn<index_ptr[icell+1];iconn++)
7332 int inode=conn_ptr[iconn];
7333 for (int iconnr=indexr_ptr[inode]; iconnr<indexr_ptr[inode+1];iconnr++)
7335 int icell2=revConn_ptr[iconnr];
7336 std::map<int,int>::iterator iter=counter.find(icell2);
7337 if (iter!=counter.end()) (iter->second)++;
7338 else counter.insert(std::make_pair(icell2,1));
7341 for (std::map<int,int>::const_iterator iter=counter.begin();
7342 iter!=counter.end(); iter++)
7343 if (iter->second >= meshDim)
7345 cell2cell_index[icell+1]++;
7346 cell2cell.push_back(iter->first);
7351 cell2cell_index[0]=0;
7352 for (int icell=0; icell<nbCells;icell++)
7353 cell2cell_index[icell+1]=cell2cell_index[icell]+cell2cell_index[icell+1];
7355 //filling up index and value to create skylinearray structure
7356 MEDCouplingSkyLineArray * array(MEDCouplingSkyLineArray::New(cell2cell_index,cell2cell));
7361 void MEDCouplingUMesh::writeVTKLL(std::ostream& ofs, const std::string& cellData, const std::string& pointData, DataArrayByte *byteData) const
7363 int nbOfCells=getNumberOfCells();
7365 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::writeVTK : the unstructured mesh has no cells !");
7366 ofs << " <" << getVTKDataSetType() << ">\n";
7367 ofs << " <Piece NumberOfPoints=\"" << getNumberOfNodes() << "\" NumberOfCells=\"" << nbOfCells << "\">\n";
7368 ofs << " <PointData>\n" << pointData << std::endl;
7369 ofs << " </PointData>\n";
7370 ofs << " <CellData>\n" << cellData << std::endl;
7371 ofs << " </CellData>\n";
7372 ofs << " <Points>\n";
7373 if(getSpaceDimension()==3)
7374 _coords->writeVTK(ofs,8,"Points",byteData);
7377 MCAuto<DataArrayDouble> coo=_coords->changeNbOfComponents(3,0.);
7378 coo->writeVTK(ofs,8,"Points",byteData);
7380 ofs << " </Points>\n";
7381 ofs << " <Cells>\n";
7382 const int *cPtr=_nodal_connec->begin();
7383 const int *cIPtr=_nodal_connec_index->begin();
7384 MCAuto<DataArrayInt> faceoffsets=DataArrayInt::New(); faceoffsets->alloc(nbOfCells,1);
7385 MCAuto<DataArrayInt> types=DataArrayInt::New(); types->alloc(nbOfCells,1);
7386 MCAuto<DataArrayInt> offsets=DataArrayInt::New(); offsets->alloc(nbOfCells,1);
7387 MCAuto<DataArrayInt> connectivity=DataArrayInt::New(); connectivity->alloc(_nodal_connec->getNumberOfTuples()-nbOfCells,1);
7388 int *w1=faceoffsets->getPointer(),*w2=types->getPointer(),*w3=offsets->getPointer(),*w4=connectivity->getPointer();
7389 int szFaceOffsets=0,szConn=0;
7390 for(int i=0;i<nbOfCells;i++,w1++,w2++,w3++)
7393 if((INTERP_KERNEL::NormalizedCellType)cPtr[cIPtr[i]]!=INTERP_KERNEL::NORM_POLYHED)
7396 *w3=szConn+cIPtr[i+1]-cIPtr[i]-1; szConn+=cIPtr[i+1]-cIPtr[i]-1;
7397 w4=std::copy(cPtr+cIPtr[i]+1,cPtr+cIPtr[i+1],w4);
7401 int deltaFaceOffset=cIPtr[i+1]-cIPtr[i]+1;
7402 *w1=szFaceOffsets+deltaFaceOffset; szFaceOffsets+=deltaFaceOffset;
7403 std::set<int> c(cPtr+cIPtr[i]+1,cPtr+cIPtr[i+1]); c.erase(-1);
7404 *w3=szConn+(int)c.size(); szConn+=(int)c.size();
7405 w4=std::copy(c.begin(),c.end(),w4);
7408 types->transformWithIndArr(MEDCOUPLING2VTKTYPETRADUCER,MEDCOUPLING2VTKTYPETRADUCER+INTERP_KERNEL::NORM_MAXTYPE+1);
7409 types->writeVTK(ofs,8,"UInt8","types",byteData);
7410 offsets->writeVTK(ofs,8,"Int32","offsets",byteData);
7411 if(szFaceOffsets!=0)
7412 {//presence of Polyhedra
7413 connectivity->reAlloc(szConn);
7414 faceoffsets->writeVTK(ofs,8,"Int32","faceoffsets",byteData);
7415 MCAuto<DataArrayInt> faces=DataArrayInt::New(); faces->alloc(szFaceOffsets,1);
7416 w1=faces->getPointer();
7417 for(int i=0;i<nbOfCells;i++)
7418 if((INTERP_KERNEL::NormalizedCellType)cPtr[cIPtr[i]]==INTERP_KERNEL::NORM_POLYHED)
7420 int nbFaces=std::count(cPtr+cIPtr[i]+1,cPtr+cIPtr[i+1],-1)+1;
7422 const int *w6=cPtr+cIPtr[i]+1,*w5=0;
7423 for(int j=0;j<nbFaces;j++)
7425 w5=std::find(w6,cPtr+cIPtr[i+1],-1);
7426 *w1++=(int)std::distance(w6,w5);
7427 w1=std::copy(w6,w5,w1);
7431 faces->writeVTK(ofs,8,"Int32","faces",byteData);
7433 connectivity->writeVTK(ofs,8,"Int32","connectivity",byteData);
7434 ofs << " </Cells>\n";
7435 ofs << " </Piece>\n";
7436 ofs << " </" << getVTKDataSetType() << ">\n";
7439 void MEDCouplingUMesh::reprQuickOverview(std::ostream& stream) const
7441 stream << "MEDCouplingUMesh C++ instance at " << this << ". Name : \"" << getName() << "\".";
7443 { stream << " Not set !"; return ; }
7444 stream << " Mesh dimension : " << _mesh_dim << ".";
7448 { stream << " No coordinates set !"; return ; }
7449 if(!_coords->isAllocated())
7450 { stream << " Coordinates set but not allocated !"; return ; }
7451 stream << " Space dimension : " << _coords->getNumberOfComponents() << "." << std::endl;
7452 stream << "Number of nodes : " << _coords->getNumberOfTuples() << ".";
7453 if(!_nodal_connec_index)
7454 { stream << std::endl << "Nodal connectivity NOT set !"; return ; }
7455 if(!_nodal_connec_index->isAllocated())
7456 { stream << std::endl << "Nodal connectivity set but not allocated !"; return ; }
7457 int lgth=_nodal_connec_index->getNumberOfTuples();
7458 int cpt=_nodal_connec_index->getNumberOfComponents();
7459 if(cpt!=1 || lgth<1)
7461 stream << std::endl << "Number of cells : " << lgth-1 << ".";
7464 std::string MEDCouplingUMesh::getVTKDataSetType() const
7466 return std::string("UnstructuredGrid");
7469 std::string MEDCouplingUMesh::getVTKFileExtension() const
7471 return std::string("vtu");
7477 * Provides a renumbering of the cells of this (which has to be a piecewise connected 1D line), so that
7478 * the segments of the line are indexed in consecutive order (i.e. cells \a i and \a i+1 are neighbors).
7479 * This doesn't modify the mesh. This method only works using nodal connectivity consideration. Coordinates of nodes are ignored here.
7480 * The caller is to deal with the resulting DataArrayInt.
7481 * \throw If the coordinate array is not set.
7482 * \throw If the nodal connectivity of the cells is not defined.
7483 * \throw If m1 is not a mesh of dimension 2, or m1 is not a mesh of dimension 1
7484 * \throw If m2 is not a (piecewise) line (i.e. if a point has more than 2 adjacent segments)
7486 * \sa DataArrayInt::sortEachPairToMakeALinkedList
7488 DataArrayInt *MEDCouplingUMesh::orderConsecutiveCells1D() const
7490 checkFullyDefined();
7491 if(getMeshDimension()!=1)
7492 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::orderConsecutiveCells1D works on unstructured mesh with meshdim = 1 !");
7494 // Check that this is a line (and not a more complex 1D mesh) - each point is used at most by 2 segments:
7495 MCAuto<DataArrayInt> _d(DataArrayInt::New()),_dI(DataArrayInt::New());
7496 MCAuto<DataArrayInt> _rD(DataArrayInt::New()),_rDI(DataArrayInt::New());
7497 MCAuto<MEDCouplingUMesh> m_points(buildDescendingConnectivity(_d, _dI, _rD, _rDI));
7498 const int *d(_d->begin()), *dI(_dI->begin());
7499 const int *rD(_rD->begin()), *rDI(_rDI->begin());
7500 MCAuto<DataArrayInt> _dsi(_rDI->deltaShiftIndex());
7501 const int * dsi(_dsi->begin());
7502 MCAuto<DataArrayInt> dsii = _dsi->findIdsNotInRange(0,3);
7504 if (dsii->getNumberOfTuples())
7505 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::orderConsecutiveCells1D only work with a mesh being a (piecewise) connected line!");
7507 int nc(getNumberOfCells());
7508 MCAuto<DataArrayInt> result(DataArrayInt::New());
7509 result->alloc(nc,1);
7511 // set of edges not used so far
7512 std::set<int> edgeSet;
7513 for (int i=0; i<nc; edgeSet.insert(i), i++);
7517 // while we have points with only one neighbor segments
7520 std::list<int> linePiece;
7521 // fills a list of consecutive segment linked to startSeg. This can go forward or backward.
7522 for (int direction=0;direction<2;direction++) // direction=0 --> forward, direction=1 --> backward
7524 // Fill the list forward (resp. backward) from the start segment:
7525 int activeSeg = startSeg;
7526 int prevPointId = -20;
7528 while (!edgeSet.empty())
7530 if (!(direction == 1 && prevPointId==-20)) // prevent adding twice startSeg
7533 linePiece.push_back(activeSeg);
7535 linePiece.push_front(activeSeg);
7536 edgeSet.erase(activeSeg);
7539 int ptId1 = d[dI[activeSeg]], ptId2 = d[dI[activeSeg]+1];
7540 ptId = direction ? (ptId1 == prevPointId ? ptId2 : ptId1) : (ptId2 == prevPointId ? ptId1 : ptId2);
7541 if (dsi[ptId] == 1) // hitting the end of the line
7544 int seg1 = rD[rDI[ptId]], seg2 = rD[rDI[ptId]+1];
7545 activeSeg = (seg1 == activeSeg) ? seg2 : seg1;
7548 // Done, save final piece into DA:
7549 std::copy(linePiece.begin(), linePiece.end(), result->getPointer()+newIdx);
7550 newIdx += linePiece.size();
7552 // identify next valid start segment (one which is not consumed)
7553 if(!edgeSet.empty())
7554 startSeg = *(edgeSet.begin());
7556 while (!edgeSet.empty());
7557 return result.retn();
7561 * This method split some of edges of 2D cells in \a this. The edges to be split are specified in \a subNodesInSeg
7562 * and in \a subNodesInSegI using \ref numbering-indirect storage mode.
7563 * To do the work this method can optionally needs information about middle of subedges for quadratic cases if
7564 * a minimal creation of new nodes is wanted.
7565 * So this method try to reduce at most the number of new nodes. The only case that can lead this method to add
7566 * nodes if a SEG3 is split without information of middle.
7567 * \b WARNING : is returned value is different from 0 a call to MEDCouplingUMesh::mergeNodes is necessary to
7568 * avoid to have a non conform mesh.
7570 * \return int - the number of new nodes created (in most of cases 0).
7572 * \throw If \a this is not coherent.
7573 * \throw If \a this has not spaceDim equal to 2.
7574 * \throw If \a this has not meshDim equal to 2.
7575 * \throw If some subcells needed to be split are orphan.
7576 * \sa MEDCouplingUMesh::conformize2D
7578 int MEDCouplingUMesh::split2DCells(const DataArrayInt *desc, const DataArrayInt *descI, const DataArrayInt *subNodesInSeg, const DataArrayInt *subNodesInSegI, const DataArrayInt *midOpt, const DataArrayInt *midOptI)
7580 if(!desc || !descI || !subNodesInSeg || !subNodesInSegI)
7581 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::split2DCells : the 4 first arrays must be not null !");
7582 desc->checkAllocated(); descI->checkAllocated(); subNodesInSeg->checkAllocated(); subNodesInSegI->checkAllocated();
7583 if(getSpaceDimension()!=2 || getMeshDimension()!=2)
7584 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::split2DCells : This method only works for meshes with spaceDim=2 and meshDim=2 !");
7585 if(midOpt==0 && midOptI==0)
7587 split2DCellsLinear(desc,descI,subNodesInSeg,subNodesInSegI);
7590 else if(midOpt!=0 && midOptI!=0)
7591 return split2DCellsQuadratic(desc,descI,subNodesInSeg,subNodesInSegI,midOpt,midOptI);
7593 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::split2DCells : middle parameters must be set to null for all or not null for all.");
7597 * This method compute the convex hull of a single 2D cell. This method tries to conserve at maximum the given input connectivity. In particular, if the orientation of cell is not clockwise
7598 * as in MED format norm. If definitely the result of Jarvis algorithm is not matchable with the input connectivity, the result will be copied into \b nodalConnecOut parameter and
7599 * the geometric cell type set to INTERP_KERNEL::NORM_POLYGON.
7600 * This method excepts that \b coords parameter is expected to be in dimension 2. [ \b nodalConnBg , \b nodalConnEnd ) is the nodal connectivity of the input
7601 * cell (geometric cell type included at the position 0). If the meshdimension of the input cell is not equal to 2 an INTERP_KERNEL::Exception will be thrown.
7603 * \return false if the input connectivity represents already the convex hull, true if the input cell needs to be reordered.
7605 bool MEDCouplingUMesh::BuildConvexEnvelopOf2DCellJarvis(const double *coords, const int *nodalConnBg, const int *nodalConnEnd, DataArrayInt *nodalConnecOut)
7607 std::size_t sz=std::distance(nodalConnBg,nodalConnEnd);
7610 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)*nodalConnBg);
7611 if(cm.getDimension()==2)
7613 const int *node=nodalConnBg+1;
7614 int startNode=*node++;
7615 double refX=coords[2*startNode];
7616 for(;node!=nodalConnEnd;node++)
7618 if(coords[2*(*node)]<refX)
7621 refX=coords[2*startNode];
7624 std::vector<int> tmpOut; tmpOut.reserve(sz); tmpOut.push_back(startNode);
7628 double angle0=-M_PI/2;
7633 double angleNext=0.;
7634 while(nextNode!=startNode)
7638 for(node=nodalConnBg+1;node!=nodalConnEnd;node++)
7640 if(*node!=tmpOut.back() && *node!=prevNode)
7642 tmp2[0]=coords[2*(*node)]-coords[2*tmpOut.back()]; tmp2[1]=coords[2*(*node)+1]-coords[2*tmpOut.back()+1];
7643 double angleM=INTERP_KERNEL::EdgeArcCircle::GetAbsoluteAngle(tmp2,tmp1);
7648 res=angle0-angleM+2.*M_PI;
7657 if(nextNode!=startNode)
7659 angle0=angleNext-M_PI;
7662 prevNode=tmpOut.back();
7663 tmpOut.push_back(nextNode);
7666 std::vector<int> tmp3(2*(sz-1));
7667 std::vector<int>::iterator it=std::copy(nodalConnBg+1,nodalConnEnd,tmp3.begin());
7668 std::copy(nodalConnBg+1,nodalConnEnd,it);
7669 if(std::search(tmp3.begin(),tmp3.end(),tmpOut.begin(),tmpOut.end())!=tmp3.end())
7671 nodalConnecOut->insertAtTheEnd(nodalConnBg,nodalConnEnd);
7674 if(std::search(tmp3.rbegin(),tmp3.rend(),tmpOut.begin(),tmpOut.end())!=tmp3.rend())
7676 nodalConnecOut->insertAtTheEnd(nodalConnBg,nodalConnEnd);
7681 nodalConnecOut->pushBackSilent((int)INTERP_KERNEL::NORM_POLYGON);
7682 nodalConnecOut->insertAtTheEnd(tmpOut.begin(),tmpOut.end());
7687 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::BuildConvexEnvelopOf2DCellJarvis : invalid 2D cell connectivity !");
7690 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::BuildConvexEnvelopOf2DCellJarvis : invalid 2D cell connectivity !");
7694 * This method works on an input pair (\b arr, \b arrIndx) where \b arr indexes is in \b arrIndx.
7695 * This method will not impact the size of inout parameter \b arrIndx but the size of \b arr will be modified in case of suppression.
7697 * \param [in] idsToRemoveBg begin of set of ids to remove in \b arr (included)
7698 * \param [in] idsToRemoveEnd end of set of ids to remove in \b arr (excluded)
7699 * \param [in,out] arr array in which the remove operation will be done.
7700 * \param [in,out] arrIndx array in the remove operation will modify
7701 * \param [in] offsetForRemoval (by default 0) offset so that for each i in [0,arrIndx->getNumberOfTuples()-1) removal process will be performed in the following range [arr+arrIndx[i]+offsetForRemoval,arr+arr[i+1])
7702 * \return true if \b arr and \b arrIndx have been modified, false if not.
7704 bool MEDCouplingUMesh::RemoveIdsFromIndexedArrays(const int *idsToRemoveBg, const int *idsToRemoveEnd, DataArrayInt *arr, DataArrayInt *arrIndx, int offsetForRemoval)
7706 if(!arrIndx || !arr)
7707 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::RemoveIdsFromIndexedArrays : some input arrays are empty !");
7708 if(offsetForRemoval<0)
7709 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::RemoveIdsFromIndexedArrays : offsetForRemoval should be >=0 !");
7710 std::set<int> s(idsToRemoveBg,idsToRemoveEnd);
7711 int nbOfGrps=arrIndx->getNumberOfTuples()-1;
7712 int *arrIPtr=arrIndx->getPointer();
7715 const int *arrPtr=arr->begin();
7716 std::vector<int> arrOut;//no utility to switch to DataArrayInt because copy always needed
7717 for(int i=0;i<nbOfGrps;i++,arrIPtr++)
7719 if(*arrIPtr-previousArrI>offsetForRemoval)
7721 for(const int *work=arrPtr+previousArrI+offsetForRemoval;work!=arrPtr+*arrIPtr;work++)
7723 if(s.find(*work)==s.end())
7724 arrOut.push_back(*work);
7727 previousArrI=*arrIPtr;
7728 *arrIPtr=(int)arrOut.size();
7730 if(arr->getNumberOfTuples()==arrOut.size())
7732 arr->alloc((int)arrOut.size(),1);
7733 std::copy(arrOut.begin(),arrOut.end(),arr->getPointer());
7738 * This method works on a pair input (\b arrIn, \b arrIndxIn) where \b arrIn indexes is in \b arrIndxIn
7739 * (\ref numbering-indirect).
7740 * This method returns the result of the extraction ( specified by a set of ids in [\b idsOfSelectBg , \b idsOfSelectEnd ) ).
7741 * The selection of extraction is done standardly in new2old format.
7742 * This method returns indexed arrays (\ref numbering-indirect) using 2 arrays (arrOut,arrIndexOut).
7744 * \param [in] idsOfSelectBg begin of set of ids of the input extraction (included)
7745 * \param [in] idsOfSelectEnd end of set of ids of the input extraction (excluded)
7746 * \param [in] arrIn arr origin array from which the extraction will be done.
7747 * \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
7748 * \param [out] arrOut the resulting array
7749 * \param [out] arrIndexOut the index array of the resulting array \b arrOut
7750 * \sa MEDCouplingUMesh::ExtractFromIndexedArraysSlice
7752 void MEDCouplingUMesh::ExtractFromIndexedArrays(const int *idsOfSelectBg, const int *idsOfSelectEnd, const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn,
7753 DataArrayInt* &arrOut, DataArrayInt* &arrIndexOut)
7755 if(!arrIn || !arrIndxIn)
7756 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ExtractFromIndexedArrays : input pointer is NULL !");
7757 arrIn->checkAllocated(); arrIndxIn->checkAllocated();
7758 if(arrIn->getNumberOfComponents()!=1 || arrIndxIn->getNumberOfComponents()!=1)
7759 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ExtractFromIndexedArrays : input arrays must have exactly one component !");
7760 std::size_t sz=std::distance(idsOfSelectBg,idsOfSelectEnd);
7761 const int *arrInPtr=arrIn->begin();
7762 const int *arrIndxPtr=arrIndxIn->begin();
7763 int nbOfGrps=arrIndxIn->getNumberOfTuples()-1;
7765 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ExtractFromIndexedArrays : The format of \"arrIndxIn\" is invalid ! Its nb of tuples should be >=1 !");
7766 int maxSizeOfArr=arrIn->getNumberOfTuples();
7767 MCAuto<DataArrayInt> arro=DataArrayInt::New();
7768 MCAuto<DataArrayInt> arrIo=DataArrayInt::New();
7769 arrIo->alloc((int)(sz+1),1);
7770 const int *idsIt=idsOfSelectBg;
7771 int *work=arrIo->getPointer();
7774 for(std::size_t i=0;i<sz;i++,work++,idsIt++)
7776 if(*idsIt>=0 && *idsIt<nbOfGrps)
7777 lgth+=arrIndxPtr[*idsIt+1]-arrIndxPtr[*idsIt];
7780 std::ostringstream oss; oss << "MEDCouplingUMesh::ExtractFromIndexedArrays : id located on pos #" << i << " value is " << *idsIt << " ! Must be in [0," << nbOfGrps << ") !";
7781 throw INTERP_KERNEL::Exception(oss.str());
7787 std::ostringstream oss; oss << "MEDCouplingUMesh::ExtractFromIndexedArrays : id located on pos #" << i << " value is " << *idsIt << " and at this pos arrIndxIn[" << *idsIt;
7788 oss << "+1]-arrIndxIn[" << *idsIt << "] < 0 ! The input index array is bugged !";
7789 throw INTERP_KERNEL::Exception(oss.str());
7792 arro->alloc(lgth,1);
7793 work=arro->getPointer();
7794 idsIt=idsOfSelectBg;
7795 for(std::size_t i=0;i<sz;i++,idsIt++)
7797 if(arrIndxPtr[*idsIt]>=0 && arrIndxPtr[*idsIt+1]<=maxSizeOfArr)
7798 work=std::copy(arrInPtr+arrIndxPtr[*idsIt],arrInPtr+arrIndxPtr[*idsIt+1],work);
7801 std::ostringstream oss; oss << "MEDCouplingUMesh::ExtractFromIndexedArrays : id located on pos #" << i << " value is " << *idsIt << " arrIndx[" << *idsIt << "] must be >= 0 and arrIndx[";
7802 oss << *idsIt << "+1] <= " << maxSizeOfArr << " (the size of arrIn)!";
7803 throw INTERP_KERNEL::Exception(oss.str());
7807 arrIndexOut=arrIo.retn();
7811 * This method works on a pair input (\b arrIn, \b arrIndxIn) where \b arrIn indexes is in \b arrIndxIn
7812 * (\ref numbering-indirect).
7813 * This method returns the result of the extraction ( specified by a set of ids with a slice given by \a idsOfSelectStart, \a idsOfSelectStop and \a idsOfSelectStep ).
7814 * The selection of extraction is done standardly in new2old format.
7815 * This method returns indexed arrays (\ref numbering-indirect) using 2 arrays (arrOut,arrIndexOut).
7817 * \param [in] idsOfSelectStart begin of set of ids of the input extraction (included)
7818 * \param [in] idsOfSelectStop end of set of ids of the input extraction (excluded)
7819 * \param [in] idsOfSelectStep
7820 * \param [in] arrIn arr origin array from which the extraction will be done.
7821 * \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
7822 * \param [out] arrOut the resulting array
7823 * \param [out] arrIndexOut the index array of the resulting array \b arrOut
7824 * \sa MEDCouplingUMesh::ExtractFromIndexedArrays
7826 void MEDCouplingUMesh::ExtractFromIndexedArraysSlice(int idsOfSelectStart, int idsOfSelectStop, int idsOfSelectStep, const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn,
7827 DataArrayInt* &arrOut, DataArrayInt* &arrIndexOut)
7829 if(!arrIn || !arrIndxIn)
7830 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ExtractFromIndexedArraysSlice : input pointer is NULL !");
7831 arrIn->checkAllocated(); arrIndxIn->checkAllocated();
7832 if(arrIn->getNumberOfComponents()!=1 || arrIndxIn->getNumberOfComponents()!=1)
7833 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ExtractFromIndexedArraysSlice : input arrays must have exactly one component !");
7834 int sz=DataArrayInt::GetNumberOfItemGivenBESRelative(idsOfSelectStart,idsOfSelectStop,idsOfSelectStep,"MEDCouplingUMesh::ExtractFromIndexedArraysSlice : Input slice ");
7835 const int *arrInPtr=arrIn->begin();
7836 const int *arrIndxPtr=arrIndxIn->begin();
7837 int nbOfGrps=arrIndxIn->getNumberOfTuples()-1;
7839 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ExtractFromIndexedArraysSlice : The format of \"arrIndxIn\" is invalid ! Its nb of tuples should be >=1 !");
7840 int maxSizeOfArr=arrIn->getNumberOfTuples();
7841 MCAuto<DataArrayInt> arro=DataArrayInt::New();
7842 MCAuto<DataArrayInt> arrIo=DataArrayInt::New();
7843 arrIo->alloc((int)(sz+1),1);
7844 int idsIt=idsOfSelectStart;
7845 int *work=arrIo->getPointer();
7848 for(int i=0;i<sz;i++,work++,idsIt+=idsOfSelectStep)
7850 if(idsIt>=0 && idsIt<nbOfGrps)
7851 lgth+=arrIndxPtr[idsIt+1]-arrIndxPtr[idsIt];
7854 std::ostringstream oss; oss << "MEDCouplingUMesh::ExtractFromIndexedArraysSlice : id located on pos #" << i << " value is " << idsIt << " ! Must be in [0," << nbOfGrps << ") !";
7855 throw INTERP_KERNEL::Exception(oss.str());
7861 std::ostringstream oss; oss << "MEDCouplingUMesh::ExtractFromIndexedArraysSlice : id located on pos #" << i << " value is " << idsIt << " and at this pos arrIndxIn[" << idsIt;
7862 oss << "+1]-arrIndxIn[" << idsIt << "] < 0 ! The input index array is bugged !";
7863 throw INTERP_KERNEL::Exception(oss.str());
7866 arro->alloc(lgth,1);
7867 work=arro->getPointer();
7868 idsIt=idsOfSelectStart;
7869 for(int i=0;i<sz;i++,idsIt+=idsOfSelectStep)
7871 if(arrIndxPtr[idsIt]>=0 && arrIndxPtr[idsIt+1]<=maxSizeOfArr)
7872 work=std::copy(arrInPtr+arrIndxPtr[idsIt],arrInPtr+arrIndxPtr[idsIt+1],work);
7875 std::ostringstream oss; oss << "MEDCouplingUMesh::ExtractFromIndexedArraysSlice : id located on pos #" << i << " value is " << idsIt << " arrIndx[" << idsIt << "] must be >= 0 and arrIndx[";
7876 oss << idsIt << "+1] <= " << maxSizeOfArr << " (the size of arrIn)!";
7877 throw INTERP_KERNEL::Exception(oss.str());
7881 arrIndexOut=arrIo.retn();
7885 * This method works on an input pair (\b arrIn, \b arrIndxIn) where \b arrIn indexes is in \b arrIndxIn.
7886 * This method builds an output pair (\b arrOut,\b arrIndexOut) that is a copy from \b arrIn for all cell ids \b not \b in [ \b idsOfSelectBg , \b idsOfSelectEnd ) and for
7887 * cellIds \b in [ \b idsOfSelectBg , \b idsOfSelectEnd ) a copy coming from the corresponding values in input pair (\b srcArr, \b srcArrIndex).
7888 * This method is an generalization of MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx that performs the same thing but by without building explicitely a result output arrays.
7890 * \param [in] idsOfSelectBg begin of set of ids of the input extraction (included)
7891 * \param [in] idsOfSelectEnd end of set of ids of the input extraction (excluded)
7892 * \param [in] arrIn arr origin array from which the extraction will be done.
7893 * \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
7894 * \param [in] srcArr input array that will be used as source of copy for ids in [ \b idsOfSelectBg, \b idsOfSelectEnd )
7895 * \param [in] srcArrIndex index array of \b srcArr
7896 * \param [out] arrOut the resulting array
7897 * \param [out] arrIndexOut the index array of the resulting array \b arrOut
7899 * \sa MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx
7901 void MEDCouplingUMesh::SetPartOfIndexedArrays(const int *idsOfSelectBg, const int *idsOfSelectEnd, const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn,
7902 const DataArrayInt *srcArr, const DataArrayInt *srcArrIndex,
7903 DataArrayInt* &arrOut, DataArrayInt* &arrIndexOut)
7905 if(arrIn==0 || arrIndxIn==0 || srcArr==0 || srcArrIndex==0)
7906 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::SetPartOfIndexedArrays : presence of null pointer in input parameter !");
7907 MCAuto<DataArrayInt> arro=DataArrayInt::New();
7908 MCAuto<DataArrayInt> arrIo=DataArrayInt::New();
7909 int nbOfTuples=arrIndxIn->getNumberOfTuples()-1;
7910 std::vector<bool> v(nbOfTuples,true);
7912 const int *arrIndxInPtr=arrIndxIn->begin();
7913 const int *srcArrIndexPtr=srcArrIndex->begin();
7914 for(const int *it=idsOfSelectBg;it!=idsOfSelectEnd;it++,srcArrIndexPtr++)
7916 if(*it>=0 && *it<nbOfTuples)
7919 offset+=(srcArrIndexPtr[1]-srcArrIndexPtr[0])-(arrIndxInPtr[*it+1]-arrIndxInPtr[*it]);
7923 std::ostringstream oss; oss << "MEDCouplingUMesh::SetPartOfIndexedArrays : On pos #" << std::distance(idsOfSelectBg,it) << " value is " << *it << " not in [0," << nbOfTuples << ") !";
7924 throw INTERP_KERNEL::Exception(oss.str());
7927 srcArrIndexPtr=srcArrIndex->begin();
7928 arrIo->alloc(nbOfTuples+1,1);
7929 arro->alloc(arrIn->getNumberOfTuples()+offset,1);
7930 const int *arrInPtr=arrIn->begin();
7931 const int *srcArrPtr=srcArr->begin();
7932 int *arrIoPtr=arrIo->getPointer(); *arrIoPtr++=0;
7933 int *arroPtr=arro->getPointer();
7934 for(int ii=0;ii<nbOfTuples;ii++,arrIoPtr++)
7938 arroPtr=std::copy(arrInPtr+arrIndxInPtr[ii],arrInPtr+arrIndxInPtr[ii+1],arroPtr);
7939 *arrIoPtr=arrIoPtr[-1]+(arrIndxInPtr[ii+1]-arrIndxInPtr[ii]);
7943 std::size_t pos=std::distance(idsOfSelectBg,std::find(idsOfSelectBg,idsOfSelectEnd,ii));
7944 arroPtr=std::copy(srcArrPtr+srcArrIndexPtr[pos],srcArrPtr+srcArrIndexPtr[pos+1],arroPtr);
7945 *arrIoPtr=arrIoPtr[-1]+(srcArrIndexPtr[pos+1]-srcArrIndexPtr[pos]);
7949 arrIndexOut=arrIo.retn();
7953 * This method works on an input pair (\b arrIn, \b arrIndxIn) where \b arrIn indexes is in \b arrIndxIn.
7954 * This method is an specialization of MEDCouplingUMesh::SetPartOfIndexedArrays in the case of assignement do not modify the index in \b arrIndxIn.
7956 * \param [in] idsOfSelectBg begin of set of ids of the input extraction (included)
7957 * \param [in] idsOfSelectEnd end of set of ids of the input extraction (excluded)
7958 * \param [in,out] arrInOut arr origin array from which the extraction will be done.
7959 * \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
7960 * \param [in] srcArr input array that will be used as source of copy for ids in [ \b idsOfSelectBg , \b idsOfSelectEnd )
7961 * \param [in] srcArrIndex index array of \b srcArr
7963 * \sa MEDCouplingUMesh::SetPartOfIndexedArrays
7965 void MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx(const int *idsOfSelectBg, const int *idsOfSelectEnd, DataArrayInt *arrInOut, const DataArrayInt *arrIndxIn,
7966 const DataArrayInt *srcArr, const DataArrayInt *srcArrIndex)
7968 if(arrInOut==0 || arrIndxIn==0 || srcArr==0 || srcArrIndex==0)
7969 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx : presence of null pointer in input parameter !");
7970 int nbOfTuples=arrIndxIn->getNumberOfTuples()-1;
7971 const int *arrIndxInPtr=arrIndxIn->begin();
7972 const int *srcArrIndexPtr=srcArrIndex->begin();
7973 int *arrInOutPtr=arrInOut->getPointer();
7974 const int *srcArrPtr=srcArr->begin();
7975 for(const int *it=idsOfSelectBg;it!=idsOfSelectEnd;it++,srcArrIndexPtr++)
7977 if(*it>=0 && *it<nbOfTuples)
7979 if(srcArrIndexPtr[1]-srcArrIndexPtr[0]==arrIndxInPtr[*it+1]-arrIndxInPtr[*it])
7980 std::copy(srcArrPtr+srcArrIndexPtr[0],srcArrPtr+srcArrIndexPtr[1],arrInOutPtr+arrIndxInPtr[*it]);
7983 std::ostringstream oss; oss << "MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx : On pos #" << std::distance(idsOfSelectBg,it) << " id (idsOfSelectBg[" << std::distance(idsOfSelectBg,it)<< "]) is " << *it << " arrIndxIn[id+1]-arrIndxIn[id]!=srcArrIndex[pos+1]-srcArrIndex[pos] !";
7984 throw INTERP_KERNEL::Exception(oss.str());
7989 std::ostringstream oss; oss << "MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx : On pos #" << std::distance(idsOfSelectBg,it) << " value is " << *it << " not in [0," << nbOfTuples << ") !";
7990 throw INTERP_KERNEL::Exception(oss.str());
7996 * This method works on a pair input (\b arrIn, \b arrIndxIn) where \b arr indexes is in \b arrIndxIn.
7997 * This method expects that these two input arrays come from the output of MEDCouplingUMesh::computeNeighborsOfCells method.
7998 * This method start from id 0 that will be contained in output DataArrayInt. It searches then all neighbors of id0 looking at arrIn[arrIndxIn[0]:arrIndxIn[0+1]].
7999 * Then it is repeated recursively until either all ids are fetched or no more ids are reachable step by step.
8000 * A negative value in \b arrIn means that it is ignored.
8001 * This method is useful to see if a mesh is contiguous regarding its connectivity. If it is not the case the size of returned array is different from arrIndxIn->getNumberOfTuples()-1.
8003 * \param [in] arrIn arr origin array from which the extraction will be done.
8004 * \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
8005 * \return a newly allocated DataArray that stores all ids fetched by the gradually spread process.
8006 * \sa MEDCouplingUMesh::ComputeSpreadZoneGraduallyFromSeed, MEDCouplingUMesh::partitionBySpreadZone
8008 DataArrayInt *MEDCouplingUMesh::ComputeSpreadZoneGradually(const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn)
8010 int seed=0,nbOfDepthPeelingPerformed=0;
8011 return ComputeSpreadZoneGraduallyFromSeed(&seed,&seed+1,arrIn,arrIndxIn,-1,nbOfDepthPeelingPerformed);
8015 * This method works on a pair input (\b arrIn, \b arrIndxIn) where \b arr indexes is in \b arrIndxIn.
8016 * This method expects that these two input arrays come from the output of MEDCouplingUMesh::computeNeighborsOfCells method.
8017 * This method start from id 0 that will be contained in output DataArrayInt. It searches then all neighbors of id0 regarding arrIn[arrIndxIn[0]:arrIndxIn[0+1]].
8018 * Then it is repeated recursively until either all ids are fetched or no more ids are reachable step by step.
8019 * A negative value in \b arrIn means that it is ignored.
8020 * This method is useful to see if a mesh is contiguous regarding its connectivity. If it is not the case the size of returned array is different from arrIndxIn->getNumberOfTuples()-1.
8021 * \param [in] seedBg the begin pointer (included) of an array containing the seed of the search zone
8022 * \param [in] seedEnd the end pointer (not included) of an array containing the seed of the search zone
8023 * \param [in] arrIn arr origin array from which the extraction will be done.
8024 * \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
8025 * \param [in] nbOfDepthPeeling the max number of peels requested in search. By default -1, that is to say, no limit.
8026 * \param [out] nbOfDepthPeelingPerformed the number of peels effectively performed. May be different from \a nbOfDepthPeeling
8027 * \return a newly allocated DataArray that stores all ids fetched by the gradually spread process.
8028 * \sa MEDCouplingUMesh::partitionBySpreadZone
8030 DataArrayInt *MEDCouplingUMesh::ComputeSpreadZoneGraduallyFromSeed(const int *seedBg, const int *seedEnd, const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn, int nbOfDepthPeeling, int& nbOfDepthPeelingPerformed)
8032 nbOfDepthPeelingPerformed=0;
8034 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ComputeSpreadZoneGraduallyFromSeed : arrIndxIn input pointer is NULL !");
8035 int nbOfTuples=arrIndxIn->getNumberOfTuples()-1;
8038 DataArrayInt *ret=DataArrayInt::New(); ret->alloc(0,1);
8042 std::vector<bool> fetched(nbOfTuples,false);
8043 return ComputeSpreadZoneGraduallyFromSeedAlg(fetched,seedBg,seedEnd,arrIn,arrIndxIn,nbOfDepthPeeling,nbOfDepthPeelingPerformed);
8048 * This method works on an input pair (\b arrIn, \b arrIndxIn) where \b arrIn indexes is in \b arrIndxIn.
8049 * This method builds an output pair (\b arrOut,\b arrIndexOut) that is a copy from \b arrIn for all cell ids \b not \b in [ \b idsOfSelectBg , \b idsOfSelectEnd ) and for
8050 * cellIds \b in [\b idsOfSelectBg, \b idsOfSelectEnd) a copy coming from the corresponding values in input pair (\b srcArr, \b srcArrIndex).
8051 * This method is an generalization of MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx that performs the same thing but by without building explicitely a result output arrays.
8053 * \param [in] start begin of set of ids of the input extraction (included)
8054 * \param [in] end end of set of ids of the input extraction (excluded)
8055 * \param [in] step step of the set of ids in range mode.
8056 * \param [in] arrIn arr origin array from which the extraction will be done.
8057 * \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
8058 * \param [in] srcArr input array that will be used as source of copy for ids in [\b idsOfSelectBg, \b idsOfSelectEnd)
8059 * \param [in] srcArrIndex index array of \b srcArr
8060 * \param [out] arrOut the resulting array
8061 * \param [out] arrIndexOut the index array of the resulting array \b arrOut
8063 * \sa MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx MEDCouplingUMesh::SetPartOfIndexedArrays
8065 void MEDCouplingUMesh::SetPartOfIndexedArraysSlice(int start, int end, int step, const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn,
8066 const DataArrayInt *srcArr, const DataArrayInt *srcArrIndex,
8067 DataArrayInt* &arrOut, DataArrayInt* &arrIndexOut)
8069 if(arrIn==0 || arrIndxIn==0 || srcArr==0 || srcArrIndex==0)
8070 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::SetPartOfIndexedArraysSlice : presence of null pointer in input parameter !");
8071 MCAuto<DataArrayInt> arro=DataArrayInt::New();
8072 MCAuto<DataArrayInt> arrIo=DataArrayInt::New();
8073 int nbOfTuples=arrIndxIn->getNumberOfTuples()-1;
8075 const int *arrIndxInPtr=arrIndxIn->begin();
8076 const int *srcArrIndexPtr=srcArrIndex->begin();
8077 int nbOfElemsToSet=DataArray::GetNumberOfItemGivenBESRelative(start,end,step,"MEDCouplingUMesh::SetPartOfIndexedArraysSlice : ");
8079 for(int i=0;i<nbOfElemsToSet;i++,srcArrIndexPtr++,it+=step)
8081 if(it>=0 && it<nbOfTuples)
8082 offset+=(srcArrIndexPtr[1]-srcArrIndexPtr[0])-(arrIndxInPtr[it+1]-arrIndxInPtr[it]);
8085 std::ostringstream oss; oss << "MEDCouplingUMesh::SetPartOfIndexedArraysSlice : On pos #" << i << " value is " << it << " not in [0," << nbOfTuples << ") !";
8086 throw INTERP_KERNEL::Exception(oss.str());
8089 srcArrIndexPtr=srcArrIndex->begin();
8090 arrIo->alloc(nbOfTuples+1,1);
8091 arro->alloc(arrIn->getNumberOfTuples()+offset,1);
8092 const int *arrInPtr=arrIn->begin();
8093 const int *srcArrPtr=srcArr->begin();
8094 int *arrIoPtr=arrIo->getPointer(); *arrIoPtr++=0;
8095 int *arroPtr=arro->getPointer();
8096 for(int ii=0;ii<nbOfTuples;ii++,arrIoPtr++)
8098 int pos=DataArray::GetPosOfItemGivenBESRelativeNoThrow(ii,start,end,step);
8101 arroPtr=std::copy(arrInPtr+arrIndxInPtr[ii],arrInPtr+arrIndxInPtr[ii+1],arroPtr);
8102 *arrIoPtr=arrIoPtr[-1]+(arrIndxInPtr[ii+1]-arrIndxInPtr[ii]);
8106 arroPtr=std::copy(srcArrPtr+srcArrIndexPtr[pos],srcArrPtr+srcArrIndexPtr[pos+1],arroPtr);
8107 *arrIoPtr=arrIoPtr[-1]+(srcArrIndexPtr[pos+1]-srcArrIndexPtr[pos]);
8111 arrIndexOut=arrIo.retn();
8115 * This method works on an input pair (\b arrIn, \b arrIndxIn) where \b arrIn indexes is in \b arrIndxIn.
8116 * This method is an specialization of MEDCouplingUMesh::SetPartOfIndexedArrays in the case of assignement do not modify the index in \b arrIndxIn.
8118 * \param [in] start begin of set of ids of the input extraction (included)
8119 * \param [in] end end of set of ids of the input extraction (excluded)
8120 * \param [in] step step of the set of ids in range mode.
8121 * \param [in,out] arrInOut arr origin array from which the extraction will be done.
8122 * \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
8123 * \param [in] srcArr input array that will be used as source of copy for ids in [\b idsOfSelectBg, \b idsOfSelectEnd)
8124 * \param [in] srcArrIndex index array of \b srcArr
8126 * \sa MEDCouplingUMesh::SetPartOfIndexedArraysSlice MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx
8128 void MEDCouplingUMesh::SetPartOfIndexedArraysSameIdxSlice(int start, int end, int step, DataArrayInt *arrInOut, const DataArrayInt *arrIndxIn,
8129 const DataArrayInt *srcArr, const DataArrayInt *srcArrIndex)
8131 if(arrInOut==0 || arrIndxIn==0 || srcArr==0 || srcArrIndex==0)
8132 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::SetPartOfIndexedArraysSameIdxSlice : presence of null pointer in input parameter !");
8133 int nbOfTuples=arrIndxIn->getNumberOfTuples()-1;
8134 const int *arrIndxInPtr=arrIndxIn->begin();
8135 const int *srcArrIndexPtr=srcArrIndex->begin();
8136 int *arrInOutPtr=arrInOut->getPointer();
8137 const int *srcArrPtr=srcArr->begin();
8138 int nbOfElemsToSet=DataArray::GetNumberOfItemGivenBESRelative(start,end,step,"MEDCouplingUMesh::SetPartOfIndexedArraysSameIdxSlice : ");
8140 for(int i=0;i<nbOfElemsToSet;i++,srcArrIndexPtr++,it+=step)
8142 if(it>=0 && it<nbOfTuples)
8144 if(srcArrIndexPtr[1]-srcArrIndexPtr[0]==arrIndxInPtr[it+1]-arrIndxInPtr[it])
8145 std::copy(srcArrPtr+srcArrIndexPtr[0],srcArrPtr+srcArrIndexPtr[1],arrInOutPtr+arrIndxInPtr[it]);
8148 std::ostringstream oss; oss << "MEDCouplingUMesh::SetPartOfIndexedArraysSameIdxSlice : On pos #" << i << " id (idsOfSelectBg[" << i << "]) is " << it << " arrIndxIn[id+1]-arrIndxIn[id]!=srcArrIndex[pos+1]-srcArrIndex[pos] !";
8149 throw INTERP_KERNEL::Exception(oss.str());
8154 std::ostringstream oss; oss << "MEDCouplingUMesh::SetPartOfIndexedArraysSameIdxSlice : On pos #" << i << " value is " << it << " not in [0," << nbOfTuples << ") !";
8155 throw INTERP_KERNEL::Exception(oss.str());
8161 * \b this is expected to be a mesh fully defined whose spaceDim==meshDim.
8162 * It returns a new allocated mesh having the same mesh dimension and lying on same coordinates.
8163 * The returned mesh contains as poly cells as number of contiguous zone (regarding connectivity).
8164 * A spread contiguous zone is built using poly cells (polyhedra in 3D, polygons in 2D and polyline in 1D).
8165 * The sum of measure field of returned mesh is equal to the sum of measure field of this.
8167 * \return a newly allocated mesh lying on the same coords than \b this with same meshdimension than \b this.
8169 MEDCouplingUMesh *MEDCouplingUMesh::buildSpreadZonesWithPoly() const
8171 checkFullyDefined();
8172 int mdim=getMeshDimension();
8173 int spaceDim=getSpaceDimension();
8175 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSpreadZonesWithPoly : meshdimension and spacedimension do not match !");
8176 std::vector<DataArrayInt *> partition=partitionBySpreadZone();
8177 std::vector< MCAuto<DataArrayInt> > partitionAuto; partitionAuto.reserve(partition.size());
8178 std::copy(partition.begin(),partition.end(),std::back_insert_iterator<std::vector< MCAuto<DataArrayInt> > >(partitionAuto));
8179 MCAuto<MEDCouplingUMesh> ret=MEDCouplingUMesh::New(getName(),mdim);
8180 ret->setCoords(getCoords());
8181 ret->allocateCells((int)partition.size());
8183 for(std::vector<DataArrayInt *>::const_iterator it=partition.begin();it!=partition.end();it++)
8185 MCAuto<MEDCouplingUMesh> tmp=static_cast<MEDCouplingUMesh *>(buildPartOfMySelf((*it)->begin(),(*it)->end(),true));
8186 MCAuto<DataArrayInt> cell;
8190 cell=tmp->buildUnionOf2DMesh();
8193 cell=tmp->buildUnionOf3DMesh();
8196 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSpreadZonesWithPoly : meshdimension supported are [2,3] ! Not implemented yet for others !");
8199 ret->insertNextCell((INTERP_KERNEL::NormalizedCellType)cell->getIJSafe(0,0),cell->getNumberOfTuples()-1,cell->begin()+1);
8202 ret->finishInsertingCells();
8207 * This method partitions \b this into contiguous zone.
8208 * This method only needs a well defined connectivity. Coordinates are not considered here.
8209 * This method returns a vector of \b newly allocated arrays that the caller has to deal with.
8211 std::vector<DataArrayInt *> MEDCouplingUMesh::partitionBySpreadZone() const
8213 DataArrayInt *neigh=0,*neighI=0;
8214 computeNeighborsOfCells(neigh,neighI);
8215 MCAuto<DataArrayInt> neighAuto(neigh),neighIAuto(neighI);
8216 return PartitionBySpreadZone(neighAuto,neighIAuto);
8219 std::vector<DataArrayInt *> MEDCouplingUMesh::PartitionBySpreadZone(const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn)
8221 if(!arrIn || !arrIndxIn)
8222 throw INTERP_KERNEL::Exception("PartitionBySpreadZone : null input pointers !");
8223 arrIn->checkAllocated(); arrIndxIn->checkAllocated();
8224 int nbOfTuples(arrIndxIn->getNumberOfTuples());
8225 if(arrIn->getNumberOfComponents()!=1 || arrIndxIn->getNumberOfComponents()!=1 || nbOfTuples<1)
8226 throw INTERP_KERNEL::Exception("PartitionBySpreadZone : invalid arrays in input !");
8227 int nbOfCellsCur(nbOfTuples-1);
8228 std::vector<DataArrayInt *> ret;
8231 std::vector<bool> fetchedCells(nbOfCellsCur,false);
8232 std::vector< MCAuto<DataArrayInt> > ret2;
8234 while(seed<nbOfCellsCur)
8236 int nbOfPeelPerformed=0;
8237 ret2.push_back(ComputeSpreadZoneGraduallyFromSeedAlg(fetchedCells,&seed,&seed+1,arrIn,arrIndxIn,-1,nbOfPeelPerformed));
8238 seed=(int)std::distance(fetchedCells.begin(),std::find(fetchedCells.begin()+seed,fetchedCells.end(),false));
8240 for(std::vector< MCAuto<DataArrayInt> >::iterator it=ret2.begin();it!=ret2.end();it++)
8241 ret.push_back((*it).retn());
8246 * This method returns given a distribution of cell type (returned for example by MEDCouplingUMesh::getDistributionOfTypes method and customized after) a
8247 * newly allocated DataArrayInt instance with 2 components ready to be interpreted as input of DataArrayInt::findRangeIdForEachTuple method.
8249 * \param [in] code a code with the same format than those returned by MEDCouplingUMesh::getDistributionOfTypes except for the code[3*k+2] that should contain start id of chunck.
8250 * \return a newly allocated DataArrayInt to be managed by the caller.
8251 * \throw In case of \a code has not the right format (typically of size 3*n)
8253 DataArrayInt *MEDCouplingUMesh::ComputeRangesFromTypeDistribution(const std::vector<int>& code)
8255 MCAuto<DataArrayInt> ret=DataArrayInt::New();
8256 std::size_t nb=code.size()/3;
8257 if(code.size()%3!=0)
8258 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ComputeRangesFromTypeDistribution : invalid input code !");
8259 ret->alloc((int)nb,2);
8260 int *retPtr=ret->getPointer();
8261 for(std::size_t i=0;i<nb;i++,retPtr+=2)
8263 retPtr[0]=code[3*i+2];
8264 retPtr[1]=code[3*i+2]+code[3*i+1];
8270 * This method expects that \a this a 3D mesh (spaceDim=3 and meshDim=3) with all coordinates and connectivities set.
8271 * All cells in \a this are expected to be linear 3D cells.
8272 * This method will split **all** 3D cells in \a this into INTERP_KERNEL::NORM_TETRA4 cells and put them in the returned mesh.
8273 * It leads to an increase to number of cells.
8274 * This method contrary to MEDCouplingUMesh::simplexize can append coordinates in \a this to perform its work.
8275 * The \a nbOfAdditionalPoints returned value informs about it. If > 0, the coordinates array in returned mesh will have \a nbOfAdditionalPoints
8276 * more tuples (nodes) than in \a this. Anyway, all the nodes in \a this (with the same order) will be in the returned mesh.
8278 * \param [in] policy - the policy of splitting that must be in (PLANAR_FACE_5, PLANAR_FACE_6, GENERAL_24, GENERAL_48). The policy will be used only for INTERP_KERNEL::NORM_HEXA8 cells.
8279 * For all other cells, the splitting policy will be ignored. See INTERP_KERNEL::SplittingPolicy for the images.
8280 * \param [out] nbOfAdditionalPoints - number of nodes added to \c this->_coords. If > 0 a new coordinates object will be constructed result of the aggregation of the old one and the new points added.
8281 * \param [out] n2oCells - A new instance of DataArrayInt holding, for each new cell,
8282 * an id of old cell producing it. The caller is to delete this array using
8283 * decrRef() as it is no more needed.
8284 * \return MEDCoupling1SGTUMesh * - the mesh containing only INTERP_KERNEL::NORM_TETRA4 cells.
8286 * \warning This method operates on each cells in this independantly ! So it can leads to non conform mesh in returned value ! If you expect to have a conform mesh in output
8287 * the policy PLANAR_FACE_6 should be used on a mesh sorted with MEDCoupling1SGTUMesh::sortHexa8EachOther.
8289 * \throw If \a this is not a 3D mesh (spaceDim==3 and meshDim==3).
8290 * \throw If \a this is not fully constituted with linear 3D cells.
8291 * \sa MEDCouplingUMesh::simplexize, MEDCoupling1SGTUMesh::sortHexa8EachOther
8293 MEDCoupling1SGTUMesh *MEDCouplingUMesh::tetrahedrize(int policy, DataArrayInt *& n2oCells, int& nbOfAdditionalPoints) const
8295 INTERP_KERNEL::SplittingPolicy pol((INTERP_KERNEL::SplittingPolicy)policy);
8296 checkConnectivityFullyDefined();
8297 if(getMeshDimension()!=3 || getSpaceDimension()!=3)
8298 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::tetrahedrize : only available for mesh with meshdim == 3 and spacedim == 3 !");
8299 int nbOfCells(getNumberOfCells()),nbNodes(getNumberOfNodes());
8300 MCAuto<MEDCoupling1SGTUMesh> ret0(MEDCoupling1SGTUMesh::New(getName(),INTERP_KERNEL::NORM_TETRA4));
8301 MCAuto<DataArrayInt> ret(DataArrayInt::New()); ret->alloc(nbOfCells,1);
8302 int *retPt(ret->getPointer());
8303 MCAuto<DataArrayInt> newConn(DataArrayInt::New()); newConn->alloc(0,1);
8304 MCAuto<DataArrayDouble> addPts(DataArrayDouble::New()); addPts->alloc(0,1);
8305 const int *oldc(_nodal_connec->begin());
8306 const int *oldci(_nodal_connec_index->begin());
8307 const double *coords(_coords->begin());
8308 for(int i=0;i<nbOfCells;i++,oldci++,retPt++)
8310 std::vector<int> a; std::vector<double> b;
8311 INTERP_KERNEL::SplitIntoTetras(pol,(INTERP_KERNEL::NormalizedCellType)oldc[oldci[0]],oldc+oldci[0]+1,oldc+oldci[1],coords,a,b);
8312 std::size_t nbOfTet(a.size()/4); *retPt=(int)nbOfTet;
8313 const int *aa(&a[0]);
8316 for(std::vector<int>::iterator it=a.begin();it!=a.end();it++)
8318 *it=(-(*(it))-1+nbNodes);
8319 addPts->insertAtTheEnd(b.begin(),b.end());
8320 nbNodes+=(int)b.size()/3;
8322 for(std::size_t j=0;j<nbOfTet;j++,aa+=4)
8323 newConn->insertAtTheEnd(aa,aa+4);
8325 if(!addPts->empty())
8327 addPts->rearrange(3);
8328 nbOfAdditionalPoints=addPts->getNumberOfTuples();
8329 addPts=DataArrayDouble::Aggregate(getCoords(),addPts);
8330 ret0->setCoords(addPts);
8334 nbOfAdditionalPoints=0;
8335 ret0->setCoords(getCoords());
8337 ret0->setNodalConnectivity(newConn);
8339 ret->computeOffsetsFull();
8340 n2oCells=ret->buildExplicitArrOfSliceOnScaledArr(0,nbOfCells,1);
8344 MEDCouplingUMeshCellIterator::MEDCouplingUMeshCellIterator(MEDCouplingUMesh *mesh):_mesh(mesh),_cell(new MEDCouplingUMeshCell(mesh)),
8345 _own_cell(true),_cell_id(-1),_nb_cell(0)
8350 _nb_cell=mesh->getNumberOfCells();
8354 MEDCouplingUMeshCellIterator::~MEDCouplingUMeshCellIterator()
8362 MEDCouplingUMeshCellIterator::MEDCouplingUMeshCellIterator(MEDCouplingUMesh *mesh, MEDCouplingUMeshCell *itc, int bg, int end):_mesh(mesh),_cell(itc),
8363 _own_cell(false),_cell_id(bg-1),
8370 MEDCouplingUMeshCell *MEDCouplingUMeshCellIterator::nextt()
8373 if(_cell_id<_nb_cell)
8382 MEDCouplingUMeshCellByTypeEntry::MEDCouplingUMeshCellByTypeEntry(MEDCouplingUMesh *mesh):_mesh(mesh)
8388 MEDCouplingUMeshCellByTypeIterator *MEDCouplingUMeshCellByTypeEntry::iterator()
8390 return new MEDCouplingUMeshCellByTypeIterator(_mesh);
8393 MEDCouplingUMeshCellByTypeEntry::~MEDCouplingUMeshCellByTypeEntry()
8399 MEDCouplingUMeshCellEntry::MEDCouplingUMeshCellEntry(MEDCouplingUMesh *mesh, INTERP_KERNEL::NormalizedCellType type, MEDCouplingUMeshCell *itc, int bg, int end):_mesh(mesh),_type(type),
8407 MEDCouplingUMeshCellEntry::~MEDCouplingUMeshCellEntry()
8413 INTERP_KERNEL::NormalizedCellType MEDCouplingUMeshCellEntry::getType() const
8418 int MEDCouplingUMeshCellEntry::getNumberOfElems() const
8423 MEDCouplingUMeshCellIterator *MEDCouplingUMeshCellEntry::iterator()
8425 return new MEDCouplingUMeshCellIterator(_mesh,_itc,_bg,_end);
8428 MEDCouplingUMeshCellByTypeIterator::MEDCouplingUMeshCellByTypeIterator(MEDCouplingUMesh *mesh):_mesh(mesh),_cell(new MEDCouplingUMeshCell(mesh)),_cell_id(0),_nb_cell(0)
8433 _nb_cell=mesh->getNumberOfCells();
8437 MEDCouplingUMeshCellByTypeIterator::~MEDCouplingUMeshCellByTypeIterator()
8444 MEDCouplingUMeshCellEntry *MEDCouplingUMeshCellByTypeIterator::nextt()
8446 const int *c=_mesh->getNodalConnectivity()->begin();
8447 const int *ci=_mesh->getNodalConnectivityIndex()->begin();
8448 if(_cell_id<_nb_cell)
8450 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)c[ci[_cell_id]];
8451 int nbOfElems=(int)std::distance(ci+_cell_id,std::find_if(ci+_cell_id,ci+_nb_cell,MEDCouplingImpl::ConnReader(c,type)));
8452 int startId=_cell_id;
8453 _cell_id+=nbOfElems;
8454 return new MEDCouplingUMeshCellEntry(_mesh,type,_cell,startId,_cell_id);
8460 MEDCouplingUMeshCell::MEDCouplingUMeshCell(MEDCouplingUMesh *mesh):_conn(0),_conn_indx(0),_conn_lgth(NOTICABLE_FIRST_VAL)
8464 _conn=mesh->getNodalConnectivity()->getPointer();
8465 _conn_indx=mesh->getNodalConnectivityIndex()->getPointer();
8469 void MEDCouplingUMeshCell::next()
8471 if(_conn_lgth!=NOTICABLE_FIRST_VAL)
8476 _conn_lgth=_conn_indx[1]-_conn_indx[0];
8479 std::string MEDCouplingUMeshCell::repr() const
8481 if(_conn_lgth!=NOTICABLE_FIRST_VAL)
8483 std::ostringstream oss; oss << "Cell Type " << INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)_conn[0]).getRepr();
8485 std::copy(_conn+1,_conn+_conn_lgth,std::ostream_iterator<int>(oss," "));
8489 return std::string("MEDCouplingUMeshCell::repr : Invalid pos");
8492 INTERP_KERNEL::NormalizedCellType MEDCouplingUMeshCell::getType() const
8494 if(_conn_lgth!=NOTICABLE_FIRST_VAL)
8495 return (INTERP_KERNEL::NormalizedCellType)_conn[0];
8497 return INTERP_KERNEL::NORM_ERROR;
8500 const int *MEDCouplingUMeshCell::getAllConn(int& lgth) const
8503 if(_conn_lgth!=NOTICABLE_FIRST_VAL)