1 // Copyright (C) 2007-2016 CEA/DEN, EDF R&D
3 // This library is free software; you can redistribute it and/or
4 // modify it under the terms of the GNU Lesser General Public
5 // License as published by the Free Software Foundation; either
6 // version 2.1 of the License, or (at your option) any later version.
8 // This library is distributed in the hope that it will be useful,
9 // but WITHOUT ANY WARRANTY; without even the implied warranty of
10 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
11 // Lesser General Public License for more details.
13 // You should have received a copy of the GNU Lesser General Public
14 // License along with this library; if not, write to the Free Software
15 // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
17 // See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
19 // Author : Anthony Geay (EDF R&D)
21 #include "MEDCouplingUMesh.txx"
22 #include "MEDCouplingCMesh.hxx"
23 #include "MEDCoupling1GTUMesh.hxx"
24 #include "MEDCouplingFieldDouble.hxx"
25 #include "MEDCouplingSkyLineArray.hxx"
26 #include "CellModel.hxx"
27 #include "VolSurfUser.txx"
28 #include "InterpolationUtils.hxx"
29 #include "PointLocatorAlgos.txx"
31 #include "BBTreeDst.txx"
32 #include "SplitterTetra.hxx"
33 #include "DiameterCalculator.hxx"
34 #include "DirectedBoundingBox.hxx"
35 #include "InterpKernelMatrixTools.hxx"
36 #include "InterpKernelMeshQuality.hxx"
37 #include "InterpKernelCellSimplify.hxx"
38 #include "InterpKernelGeo2DEdgeArcCircle.hxx"
39 #include "InterpKernelAutoPtr.hxx"
40 #include "InterpKernelGeo2DNode.hxx"
41 #include "InterpKernelGeo2DEdgeLin.hxx"
42 #include "InterpKernelGeo2DEdgeArcCircle.hxx"
43 #include "InterpKernelGeo2DQuadraticPolygon.hxx"
44 #include "OrientationInverter.hxx"
45 #include "MEDCouplingUMesh_internal.hxx"
54 using namespace MEDCoupling;
56 double MEDCouplingUMesh::EPS_FOR_POLYH_ORIENTATION=1.e-14;
59 const INTERP_KERNEL::NormalizedCellType MEDCouplingUMesh::MEDMEM_ORDER[N_MEDMEM_ORDER] = { INTERP_KERNEL::NORM_POINT1, INTERP_KERNEL::NORM_SEG2, INTERP_KERNEL::NORM_SEG3, INTERP_KERNEL::NORM_SEG4, INTERP_KERNEL::NORM_POLYL, INTERP_KERNEL::NORM_TRI3, INTERP_KERNEL::NORM_QUAD4, INTERP_KERNEL::NORM_TRI6, INTERP_KERNEL::NORM_TRI7, INTERP_KERNEL::NORM_QUAD8, INTERP_KERNEL::NORM_QUAD9, INTERP_KERNEL::NORM_POLYGON, INTERP_KERNEL::NORM_QPOLYG, INTERP_KERNEL::NORM_TETRA4, INTERP_KERNEL::NORM_PYRA5, INTERP_KERNEL::NORM_PENTA6, INTERP_KERNEL::NORM_HEXA8, INTERP_KERNEL::NORM_HEXGP12, INTERP_KERNEL::NORM_TETRA10, INTERP_KERNEL::NORM_PYRA13, INTERP_KERNEL::NORM_PENTA15, INTERP_KERNEL::NORM_PENTA18, INTERP_KERNEL::NORM_HEXA20, INTERP_KERNEL::NORM_HEXA27, INTERP_KERNEL::NORM_POLYHED };
60 const int MEDCouplingUMesh::MEDCOUPLING2VTKTYPETRADUCER[INTERP_KERNEL::NORM_MAXTYPE+1]={1,3,21,5,9,7,22,34,23,28,-1,-1,-1,-1,10,14,13,-1,12,-1,24,-1,16,27,-1,26,-1,29,32,-1,25,42,36,4};
63 MEDCouplingUMesh *MEDCouplingUMesh::New()
65 return new MEDCouplingUMesh;
68 MEDCouplingUMesh *MEDCouplingUMesh::New(const std::string& meshName, int meshDim)
70 MEDCouplingUMesh *ret=new MEDCouplingUMesh;
71 ret->setName(meshName);
72 ret->setMeshDimension(meshDim);
77 * Returns a new MEDCouplingUMesh which is a full copy of \a this one. No data is shared
78 * between \a this and the new mesh.
79 * \return MEDCouplingUMesh * - a new instance of MEDCouplingMesh. The caller is to
80 * delete this mesh using decrRef() as it is no more needed.
82 MEDCouplingUMesh *MEDCouplingUMesh::deepCopy() const
89 * Returns a new MEDCouplingUMesh which is a copy of \a this one.
90 * \param [in] recDeepCpy - if \a true, the copy is deep, else all data arrays of \a
91 * this mesh are shared by the new mesh.
92 * \return MEDCouplingUMesh * - a new instance of MEDCouplingMesh. The caller is to
93 * delete this mesh using decrRef() as it is no more needed.
95 MEDCouplingUMesh *MEDCouplingUMesh::clone(bool recDeepCpy) const
97 return new MEDCouplingUMesh(*this,recDeepCpy);
101 * This method behaves mostly like MEDCouplingUMesh::deepCopy method, except that only nodal connectivity arrays are deeply copied.
102 * The coordinates are shared between \a this and the returned instance.
104 * \return MEDCouplingUMesh * - A new object instance holding the copy of \a this (deep for connectivity, shallow for coordiantes)
105 * \sa MEDCouplingUMesh::deepCopy
107 MEDCouplingUMesh *MEDCouplingUMesh::deepCopyConnectivityOnly() const
109 checkConnectivityFullyDefined();
110 MCAuto<MEDCouplingUMesh> ret=clone(false);
111 MCAuto<DataArrayInt> c(getNodalConnectivity()->deepCopy()),ci(getNodalConnectivityIndex()->deepCopy());
112 ret->setConnectivity(c,ci);
116 void MEDCouplingUMesh::shallowCopyConnectivityFrom(const MEDCouplingPointSet *other)
119 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::shallowCopyConnectivityFrom : input pointer is null !");
120 const MEDCouplingUMesh *otherC=dynamic_cast<const MEDCouplingUMesh *>(other);
122 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::shallowCopyConnectivityFrom : input pointer is not an MEDCouplingUMesh instance !");
123 MEDCouplingUMesh *otherC2=const_cast<MEDCouplingUMesh *>(otherC);//sorry :(
124 setConnectivity(otherC2->getNodalConnectivity(),otherC2->getNodalConnectivityIndex(),true);
127 std::size_t MEDCouplingUMesh::getHeapMemorySizeWithoutChildren() const
129 std::size_t ret(MEDCouplingPointSet::getHeapMemorySizeWithoutChildren());
133 std::vector<const BigMemoryObject *> MEDCouplingUMesh::getDirectChildrenWithNull() const
135 std::vector<const BigMemoryObject *> ret(MEDCouplingPointSet::getDirectChildrenWithNull());
136 ret.push_back(_nodal_connec);
137 ret.push_back(_nodal_connec_index);
141 void MEDCouplingUMesh::updateTime() const
143 MEDCouplingPointSet::updateTime();
146 updateTimeWith(*_nodal_connec);
148 if(_nodal_connec_index)
150 updateTimeWith(*_nodal_connec_index);
154 MEDCouplingUMesh::MEDCouplingUMesh():_mesh_dim(-2),_nodal_connec(0),_nodal_connec_index(0)
159 * Checks if \a this mesh is well defined. If no exception is thrown by this method,
160 * then \a this mesh is most probably is writable, exchangeable and available for most
161 * of algorithms. When a mesh is constructed from scratch, it is a good habit to call
162 * this method to check that all is in order with \a this mesh.
163 * \throw If the mesh dimension is not set.
164 * \throw If the coordinates array is not set (if mesh dimension != -1 ).
165 * \throw If \a this mesh contains elements of dimension different from the mesh dimension.
166 * \throw If the connectivity data array has more than one component.
167 * \throw If the connectivity data array has a named component.
168 * \throw If the connectivity index data array has more than one component.
169 * \throw If the connectivity index data array has a named component.
171 void MEDCouplingUMesh::checkConsistencyLight() const
174 throw INTERP_KERNEL::Exception("No mesh dimension specified !");
176 MEDCouplingPointSet::checkConsistencyLight();
177 for(std::set<INTERP_KERNEL::NormalizedCellType>::const_iterator iter=_types.begin();iter!=_types.end();iter++)
179 if((int)INTERP_KERNEL::CellModel::GetCellModel(*iter).getDimension()!=_mesh_dim)
181 std::ostringstream message;
182 message << "Mesh invalid because dimension is " << _mesh_dim << " and there is presence of cell(s) with type " << (*iter);
183 throw INTERP_KERNEL::Exception(message.str().c_str());
188 if(_nodal_connec->getNumberOfComponents()!=1)
189 throw INTERP_KERNEL::Exception("Nodal connectivity array is expected to be with number of components set to one !");
190 if(_nodal_connec->getInfoOnComponent(0)!="")
191 throw INTERP_KERNEL::Exception("Nodal connectivity array is expected to have no info on its single component !");
195 throw INTERP_KERNEL::Exception("Nodal connectivity array is not defined !");
196 if(_nodal_connec_index)
198 if(_nodal_connec_index->getNumberOfComponents()!=1)
199 throw INTERP_KERNEL::Exception("Nodal connectivity index array is expected to be with number of components set to one !");
200 if(_nodal_connec_index->getInfoOnComponent(0)!="")
201 throw INTERP_KERNEL::Exception("Nodal connectivity index array is expected to have no info on its single component !");
205 throw INTERP_KERNEL::Exception("Nodal connectivity index array is not defined !");
209 * Checks if \a this mesh is well defined. If no exception is thrown by this method,
210 * then \a this mesh is most probably is writable, exchangeable and available for all
211 * algorithms. <br> In addition to the checks performed by checkConsistencyLight(), this
212 * method thoroughly checks the nodal connectivity.
213 * \param [in] eps - a not used parameter.
214 * \throw If the mesh dimension is not set.
215 * \throw If the coordinates array is not set (if mesh dimension != -1 ).
216 * \throw If \a this mesh contains elements of dimension different from the mesh dimension.
217 * \throw If the connectivity data array has more than one component.
218 * \throw If the connectivity data array has a named component.
219 * \throw If the connectivity index data array has more than one component.
220 * \throw If the connectivity index data array has a named component.
221 * \throw If number of nodes defining an element does not correspond to the type of element.
222 * \throw If the nodal connectivity includes an invalid node id.
224 void MEDCouplingUMesh::checkConsistency(double eps) const
226 checkConsistencyLight();
229 int meshDim=getMeshDimension();
230 int nbOfNodes=getNumberOfNodes();
231 int nbOfCells=getNumberOfCells();
232 const int *ptr=_nodal_connec->getConstPointer();
233 const int *ptrI=_nodal_connec_index->getConstPointer();
234 for(int i=0;i<nbOfCells;i++)
236 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)ptr[ptrI[i]]);
237 if((int)cm.getDimension()!=meshDim)
239 std::ostringstream oss;
240 oss << "MEDCouplingUMesh::checkConsistency : cell << #" << i<< " with type Type " << cm.getRepr() << " in 'this' whereas meshdim == " << meshDim << " !";
241 throw INTERP_KERNEL::Exception(oss.str());
243 int nbOfNodesInCell=ptrI[i+1]-ptrI[i]-1;
245 if(nbOfNodesInCell!=(int)cm.getNumberOfNodes())
247 std::ostringstream oss;
248 oss << "MEDCouplingUMesh::checkConsistency : cell #" << i << " with static Type '" << cm.getRepr() << "' has " << cm.getNumberOfNodes();
249 oss << " nodes whereas in connectivity there is " << nbOfNodesInCell << " nodes ! Looks very bad !";
250 throw INTERP_KERNEL::Exception(oss.str());
252 if(cm.isQuadratic() && cm.isDynamic() && meshDim == 2)
253 if (nbOfNodesInCell % 2 || nbOfNodesInCell < 4)
255 std::ostringstream oss;
256 oss << "MEDCouplingUMesh::checkConsistency : cell #" << i << " with quadratic type '" << cm.getRepr() << "' has " << nbOfNodesInCell;
257 oss << " nodes. This should be even, and greater or equal than 4!! Looks very bad!";
258 throw INTERP_KERNEL::Exception(oss.str());
260 for(const int *w=ptr+ptrI[i]+1;w!=ptr+ptrI[i+1];w++)
265 if(nodeId>=nbOfNodes)
267 std::ostringstream oss; oss << "Cell #" << i << " is built with node #" << nodeId << " whereas there are only " << nbOfNodes << " nodes in the mesh !";
268 throw INTERP_KERNEL::Exception(oss.str());
273 std::ostringstream oss; oss << "Cell #" << i << " is built with node #" << nodeId << " in connectivity ! sounds bad !";
274 throw INTERP_KERNEL::Exception(oss.str());
278 if((INTERP_KERNEL::NormalizedCellType)(ptr[ptrI[i]])!=INTERP_KERNEL::NORM_POLYHED)
280 std::ostringstream oss; oss << "Cell #" << i << " is built with node #-1 in connectivity ! sounds bad !";
281 throw INTERP_KERNEL::Exception(oss.str());
289 * Sets dimension of \a this mesh. The mesh dimension in general depends on types of
290 * elements contained in the mesh. For more info on the mesh dimension see
291 * \ref MEDCouplingUMeshPage.
292 * \param [in] meshDim - a new mesh dimension.
293 * \throw If \a meshDim is invalid. A valid range is <em> -1 <= meshDim <= 3</em>.
295 void MEDCouplingUMesh::setMeshDimension(int meshDim)
297 if(meshDim<-1 || meshDim>3)
298 throw INTERP_KERNEL::Exception("Invalid meshDim specified ! Must be greater or equal to -1 and lower or equal to 3 !");
304 * Allocates memory to store an estimation of the given number of cells.
305 * The closer the estimation to the number of cells effectively inserted, the less need the library requires
306 * to reallocate memory. If the number of cells to be inserted is not known simply assign 0 to this parameter.
307 * If a nodal connectivity previously existed before the call of this method, it will be reset.
309 * \param [in] nbOfCells - estimation of the number of cell \a this mesh will contain.
311 * \if ENABLE_EXAMPLES
312 * \ref medcouplingcppexamplesUmeshStdBuild1 "Here is a C++ example".<br>
313 * \ref medcouplingpyexamplesUmeshStdBuild1 "Here is a Python example".
316 void MEDCouplingUMesh::allocateCells(int nbOfCells)
319 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::allocateCells : the input number of cells should be >= 0 !");
320 if(_nodal_connec_index)
322 _nodal_connec_index->decrRef();
326 _nodal_connec->decrRef();
328 _nodal_connec_index=DataArrayInt::New();
329 _nodal_connec_index->reserve(nbOfCells+1);
330 _nodal_connec_index->pushBackSilent(0);
331 _nodal_connec=DataArrayInt::New();
332 _nodal_connec->reserve(2*nbOfCells);
338 * Appends a cell to the connectivity array. For deeper understanding what is
339 * happening see \ref MEDCouplingUMeshNodalConnectivity.
340 * \param [in] type - type of cell to add.
341 * \param [in] size - number of nodes constituting this cell.
342 * \param [in] nodalConnOfCell - the connectivity of the cell to add.
344 * \if ENABLE_EXAMPLES
345 * \ref medcouplingcppexamplesUmeshStdBuild1 "Here is a C++ example".<br>
346 * \ref medcouplingpyexamplesUmeshStdBuild1 "Here is a Python example".
349 void MEDCouplingUMesh::insertNextCell(INTERP_KERNEL::NormalizedCellType type, int size, const int *nodalConnOfCell)
351 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(type);
352 if(_nodal_connec_index==0)
353 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::insertNextCell : nodal connectivity not set ! invoke allocateCells before calling insertNextCell !");
354 if((int)cm.getDimension()==_mesh_dim)
357 if(size!=(int)cm.getNumberOfNodes())
359 std::ostringstream oss; oss << "MEDCouplingUMesh::insertNextCell : Trying to push a " << cm.getRepr() << " cell with a size of " << size;
360 oss << " ! Expecting " << cm.getNumberOfNodes() << " !";
361 throw INTERP_KERNEL::Exception(oss.str());
363 int idx=_nodal_connec_index->back();
365 _nodal_connec_index->pushBackSilent(val);
366 _nodal_connec->writeOnPlace(idx,type,nodalConnOfCell,size);
371 std::ostringstream oss; oss << "MEDCouplingUMesh::insertNextCell : cell type " << cm.getRepr() << " has a dimension " << cm.getDimension();
372 oss << " whereas Mesh Dimension of current UMesh instance is set to " << _mesh_dim << " ! Please invoke \"setMeshDimension\" method before or invoke ";
373 oss << "\"MEDCouplingUMesh::New\" static method with 2 parameters name and meshDimension !";
374 throw INTERP_KERNEL::Exception(oss.str());
379 * Compacts data arrays to release unused memory. This method is to be called after
380 * finishing cell insertion using \a this->insertNextCell().
382 * \if ENABLE_EXAMPLES
383 * \ref medcouplingcppexamplesUmeshStdBuild1 "Here is a C++ example".<br>
384 * \ref medcouplingpyexamplesUmeshStdBuild1 "Here is a Python example".
387 void MEDCouplingUMesh::finishInsertingCells()
389 _nodal_connec->pack();
390 _nodal_connec_index->pack();
391 _nodal_connec->declareAsNew();
392 _nodal_connec_index->declareAsNew();
397 * Entry point for iteration over cells of this. Warning the returned cell iterator should be deallocated.
398 * Useful for python users.
400 MEDCouplingUMeshCellIterator *MEDCouplingUMesh::cellIterator()
402 return new MEDCouplingUMeshCellIterator(this);
406 * Entry point for iteration over cells groups geo types per geotypes. Warning the returned cell iterator should be deallocated.
407 * If \a this is not so that the cells are grouped by geo types, this method will throw an exception.
408 * In this case MEDCouplingUMesh::sortCellsInMEDFileFrmt or MEDCouplingUMesh::rearrange2ConsecutiveCellTypes methods for example can be called before invoking this method.
409 * Useful for python users.
411 MEDCouplingUMeshCellByTypeEntry *MEDCouplingUMesh::cellsByType()
413 if(!checkConsecutiveCellTypes())
414 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::cellsByType : this mesh is not sorted by type !");
415 return new MEDCouplingUMeshCellByTypeEntry(this);
419 * Returns a set of all cell types available in \a this mesh.
420 * \return std::set<INTERP_KERNEL::NormalizedCellType> - the set of cell types.
421 * \warning this method does not throw any exception even if \a this is not defined.
422 * \sa MEDCouplingUMesh::getAllGeoTypesSorted
424 std::set<INTERP_KERNEL::NormalizedCellType> MEDCouplingUMesh::getAllGeoTypes() const
430 * This method returns the sorted list of geometric types in \a this.
431 * Sorted means in the same order than the cells in \a this. A single entry in return vector means the maximal chunk of consecutive cells in \a this
432 * having the same geometric type. So a same geometric type can appear more than once if the cells are not sorted per geometric type.
434 * \throw if connectivity in \a this is not correctly defined.
436 * \sa MEDCouplingMesh::getAllGeoTypes
438 std::vector<INTERP_KERNEL::NormalizedCellType> MEDCouplingUMesh::getAllGeoTypesSorted() const
440 std::vector<INTERP_KERNEL::NormalizedCellType> ret;
441 checkConnectivityFullyDefined();
442 int nbOfCells(getNumberOfCells());
445 if(getNodalConnectivityArrayLen()<1)
446 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getAllGeoTypesSorted : the connectivity in this seems invalid !");
447 const int *c(_nodal_connec->begin()),*ci(_nodal_connec_index->begin());
448 ret.push_back((INTERP_KERNEL::NormalizedCellType)c[*ci++]);
449 for(int i=1;i<nbOfCells;i++,ci++)
450 if(ret.back()!=((INTERP_KERNEL::NormalizedCellType)c[*ci]))
451 ret.push_back((INTERP_KERNEL::NormalizedCellType)c[*ci]);
456 * This method is a method that compares \a this and \a other.
457 * This method compares \b all attributes, even names and component names.
459 bool MEDCouplingUMesh::isEqualIfNotWhy(const MEDCouplingMesh *other, double prec, std::string& reason) const
462 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::isEqualIfNotWhy : input other pointer is null !");
463 std::ostringstream oss; oss.precision(15);
464 const MEDCouplingUMesh *otherC=dynamic_cast<const MEDCouplingUMesh *>(other);
467 reason="mesh given in input is not castable in MEDCouplingUMesh !";
470 if(!MEDCouplingPointSet::isEqualIfNotWhy(other,prec,reason))
472 if(_mesh_dim!=otherC->_mesh_dim)
474 oss << "umesh dimension mismatch : this mesh dimension=" << _mesh_dim << " other mesh dimension=" << otherC->_mesh_dim;
478 if(_types!=otherC->_types)
480 oss << "umesh geometric type mismatch :\nThis geometric types are :";
481 for(std::set<INTERP_KERNEL::NormalizedCellType>::const_iterator iter=_types.begin();iter!=_types.end();iter++)
482 { const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(*iter); oss << cm.getRepr() << ", "; }
483 oss << "\nOther geometric types are :";
484 for(std::set<INTERP_KERNEL::NormalizedCellType>::const_iterator iter=otherC->_types.begin();iter!=otherC->_types.end();iter++)
485 { const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(*iter); oss << cm.getRepr() << ", "; }
489 if(_nodal_connec!=0 || otherC->_nodal_connec!=0)
490 if(_nodal_connec==0 || otherC->_nodal_connec==0)
492 reason="Only one UMesh between the two this and other has its nodal connectivity DataArrayInt defined !";
495 if(_nodal_connec!=otherC->_nodal_connec)
496 if(!_nodal_connec->isEqualIfNotWhy(*otherC->_nodal_connec,reason))
498 reason.insert(0,"Nodal connectivity DataArrayInt differ : ");
501 if(_nodal_connec_index!=0 || otherC->_nodal_connec_index!=0)
502 if(_nodal_connec_index==0 || otherC->_nodal_connec_index==0)
504 reason="Only one UMesh between the two this and other has its nodal connectivity index DataArrayInt defined !";
507 if(_nodal_connec_index!=otherC->_nodal_connec_index)
508 if(!_nodal_connec_index->isEqualIfNotWhy(*otherC->_nodal_connec_index,reason))
510 reason.insert(0,"Nodal connectivity index DataArrayInt differ : ");
517 * Checks if data arrays of this mesh (node coordinates, nodal
518 * connectivity of cells, etc) of two meshes are same. Textual data like name etc. are
520 * \param [in] other - the mesh to compare with.
521 * \param [in] prec - precision value used to compare node coordinates.
522 * \return bool - \a true if the two meshes are same.
524 bool MEDCouplingUMesh::isEqualWithoutConsideringStr(const MEDCouplingMesh *other, double prec) const
526 const MEDCouplingUMesh *otherC=dynamic_cast<const MEDCouplingUMesh *>(other);
529 if(!MEDCouplingPointSet::isEqualWithoutConsideringStr(other,prec))
531 if(_mesh_dim!=otherC->_mesh_dim)
533 if(_types!=otherC->_types)
535 if(_nodal_connec!=0 || otherC->_nodal_connec!=0)
536 if(_nodal_connec==0 || otherC->_nodal_connec==0)
538 if(_nodal_connec!=otherC->_nodal_connec)
539 if(!_nodal_connec->isEqualWithoutConsideringStr(*otherC->_nodal_connec))
541 if(_nodal_connec_index!=0 || otherC->_nodal_connec_index!=0)
542 if(_nodal_connec_index==0 || otherC->_nodal_connec_index==0)
544 if(_nodal_connec_index!=otherC->_nodal_connec_index)
545 if(!_nodal_connec_index->isEqualWithoutConsideringStr(*otherC->_nodal_connec_index))
551 * Checks if \a this and \a other meshes are geometrically equivalent with high
552 * probability, else an exception is thrown. The meshes are considered equivalent if
553 * (1) meshes contain the same number of nodes and the same number of elements of the
554 * same types (2) three cells of the two meshes (first, last and middle) are based
555 * on coincident nodes (with a specified precision).
556 * \param [in] other - the mesh to compare with.
557 * \param [in] prec - the precision used to compare nodes of the two meshes.
558 * \throw If the two meshes do not match.
560 void MEDCouplingUMesh::checkFastEquivalWith(const MEDCouplingMesh *other, double prec) const
562 MEDCouplingPointSet::checkFastEquivalWith(other,prec);
563 const MEDCouplingUMesh *otherC=dynamic_cast<const MEDCouplingUMesh *>(other);
565 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::checkFastEquivalWith : Two meshes are not not unstructured !");
569 * Returns the reverse nodal connectivity. The reverse nodal connectivity enumerates
570 * cells each node belongs to.
571 * \warning For speed reasons, this method does not check if node ids in the nodal
572 * connectivity correspond to the size of node coordinates array.
573 * \param [in,out] revNodal - an array holding ids of cells sharing each node.
574 * \param [in,out] revNodalIndx - an array, of length \a this->getNumberOfNodes() + 1,
575 * dividing cell ids in \a revNodal into groups each referring to one
576 * node. Its every element (except the last one) is an index pointing to the
577 * first id of a group of cells. For example cells sharing the node #1 are
578 * described by following range of indices:
579 * [ \a revNodalIndx[1], \a revNodalIndx[2] ) and the cell ids are
580 * \a revNodal[ \a revNodalIndx[1] ], \a revNodal[ \a revNodalIndx[1] + 1], ...
581 * Number of cells sharing the *i*-th node is
582 * \a revNodalIndx[ *i*+1 ] - \a revNodalIndx[ *i* ].
583 * \throw If the coordinates array is not set.
584 * \throw If the nodal connectivity of cells is not defined.
586 * \if ENABLE_EXAMPLES
587 * \ref cpp_mcumesh_getReverseNodalConnectivity "Here is a C++ example".<br>
588 * \ref py_mcumesh_getReverseNodalConnectivity "Here is a Python example".
591 void MEDCouplingUMesh::getReverseNodalConnectivity(DataArrayInt *revNodal, DataArrayInt *revNodalIndx) const
594 int nbOfNodes(getNumberOfNodes());
595 int *revNodalIndxPtr=(int *)malloc((nbOfNodes+1)*sizeof(int));
596 revNodalIndx->useArray(revNodalIndxPtr,true,C_DEALLOC,nbOfNodes+1,1);
597 std::fill(revNodalIndxPtr,revNodalIndxPtr+nbOfNodes+1,0);
598 const int *conn(_nodal_connec->begin()),*connIndex(_nodal_connec_index->begin());
599 int nbOfCells(getNumberOfCells()),nbOfEltsInRevNodal(0);
600 for(int eltId=0;eltId<nbOfCells;eltId++)
602 const int *strtNdlConnOfCurCell(conn+connIndex[eltId]+1),*endNdlConnOfCurCell(conn+connIndex[eltId+1]);
603 for(const int *iter=strtNdlConnOfCurCell;iter!=endNdlConnOfCurCell;iter++)
604 if(*iter>=0)//for polyhedrons
606 nbOfEltsInRevNodal++;
607 revNodalIndxPtr[(*iter)+1]++;
610 std::transform(revNodalIndxPtr+1,revNodalIndxPtr+nbOfNodes+1,revNodalIndxPtr,revNodalIndxPtr+1,std::plus<int>());
611 int *revNodalPtr=(int *)malloc((nbOfEltsInRevNodal)*sizeof(int));
612 revNodal->useArray(revNodalPtr,true,C_DEALLOC,nbOfEltsInRevNodal,1);
613 std::fill(revNodalPtr,revNodalPtr+nbOfEltsInRevNodal,-1);
614 for(int eltId=0;eltId<nbOfCells;eltId++)
616 const int *strtNdlConnOfCurCell=conn+connIndex[eltId]+1;
617 const int *endNdlConnOfCurCell=conn+connIndex[eltId+1];
618 for(const int *iter=strtNdlConnOfCurCell;iter!=endNdlConnOfCurCell;iter++)
619 if(*iter>=0)//for polyhedrons
620 *std::find_if(revNodalPtr+revNodalIndxPtr[*iter],revNodalPtr+revNodalIndxPtr[*iter+1],std::bind2nd(std::equal_to<int>(),-1))=eltId;
625 * Creates a new MEDCouplingUMesh containing cells, of dimension one less than \a
626 * this->getMeshDimension(), that bound cells of \a this mesh. In addition arrays
627 * describing correspondence between cells of \a this and the result meshes are
628 * returned. The arrays \a desc and \a descIndx (\ref numbering-indirect) describe the descending connectivity,
629 * i.e. enumerate cells of the result mesh bounding each cell of \a this mesh. The
630 * arrays \a revDesc and \a revDescIndx (\ref numbering-indirect) describe the reverse descending connectivity,
631 * i.e. enumerate cells of \a this mesh bounded by each cell of the result mesh.
632 * \warning For speed reasons, this method does not check if node ids in the nodal
633 * connectivity correspond to the size of node coordinates array.
634 * \warning Cells of the result mesh are \b not sorted by geometric type, hence,
635 * to write this mesh to the MED file, its cells must be sorted using
636 * sortCellsInMEDFileFrmt().
637 * \param [in,out] desc - the array containing cell ids of the result mesh bounding
638 * each cell of \a this mesh.
639 * \param [in,out] descIndx - the array, of length \a this->getNumberOfCells() + 1,
640 * dividing cell ids in \a desc into groups each referring to one
641 * cell of \a this mesh. Its every element (except the last one) is an index
642 * pointing to the first id of a group of cells. For example cells of the
643 * result mesh bounding the cell #1 of \a this mesh are described by following
645 * [ \a descIndx[1], \a descIndx[2] ) and the cell ids are
646 * \a desc[ \a descIndx[1] ], \a desc[ \a descIndx[1] + 1], ...
647 * Number of cells of the result mesh sharing the *i*-th cell of \a this mesh is
648 * \a descIndx[ *i*+1 ] - \a descIndx[ *i* ].
649 * \param [in,out] revDesc - the array containing cell ids of \a this mesh bounded
650 * by each cell of the result mesh.
651 * \param [in,out] revDescIndx - the array, of length one more than number of cells
652 * in the result mesh,
653 * dividing cell ids in \a revDesc into groups each referring to one
654 * cell of the result mesh the same way as \a descIndx divides \a desc.
655 * \return MEDCouplingUMesh * - a new instance of MEDCouplingUMesh. The caller is to
656 * delete this mesh using decrRef() as it is no more needed.
657 * \throw If the coordinates array is not set.
658 * \throw If the nodal connectivity of cells is node defined.
659 * \throw If \a desc == NULL || \a descIndx == NULL || \a revDesc == NULL || \a
660 * revDescIndx == NULL.
662 * \if ENABLE_EXAMPLES
663 * \ref cpp_mcumesh_buildDescendingConnectivity "Here is a C++ example".<br>
664 * \ref py_mcumesh_buildDescendingConnectivity "Here is a Python example".
666 * \sa buildDescendingConnectivity2()
668 MEDCouplingUMesh *MEDCouplingUMesh::buildDescendingConnectivity(DataArrayInt *desc, DataArrayInt *descIndx, DataArrayInt *revDesc, DataArrayInt *revDescIndx) const
670 return buildDescendingConnectivityGen<MinusOneSonsGenerator>(desc,descIndx,revDesc,revDescIndx,MEDCouplingFastNbrer);
674 * \a this has to have a mesh dimension equal to 3. If it is not the case an INTERP_KERNEL::Exception will be thrown.
675 * This behaves exactly as MEDCouplingUMesh::buildDescendingConnectivity does except that this method compute directly the transition from mesh dimension 3 to sub edges (dimension 1)
676 * in one shot. That is to say that this method is equivalent to 2 successive calls to MEDCouplingUMesh::buildDescendingConnectivity.
677 * This method returns 4 arrays and a mesh as MEDCouplingUMesh::buildDescendingConnectivity does.
678 * \sa MEDCouplingUMesh::buildDescendingConnectivity
680 MEDCouplingUMesh *MEDCouplingUMesh::explode3DMeshTo1D(DataArrayInt *desc, DataArrayInt *descIndx, DataArrayInt *revDesc, DataArrayInt *revDescIndx) const
683 if(getMeshDimension()!=3)
684 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::explode3DMeshTo1D : This has to have a mesh dimension to 3 !");
685 return buildDescendingConnectivityGen<MinusTwoSonsGenerator>(desc,descIndx,revDesc,revDescIndx,MEDCouplingFastNbrer);
689 * This method computes the micro edges constituting each cell in \a this. Micro edge is an edge for non quadratic cells. Micro edge is an half edge for quadratic cells.
690 * This method works for both meshes with mesh dimension equal to 2 or 3. Dynamical cells are not supported (polygons, polyhedrons...)
692 * \sa explode3DMeshTo1D, buildDescendingConnectiviy
694 MEDCouplingUMesh *MEDCouplingUMesh::explodeMeshIntoMicroEdges(DataArrayInt *desc, DataArrayInt *descIndx, DataArrayInt *revDesc, DataArrayInt *revDescIndx) const
697 switch(getMeshDimension())
700 return buildDescendingConnectivityGen<MicroEdgesGenerator2D>(desc,descIndx,revDesc,revDescIndx,MEDCouplingFastNbrer);
702 return buildDescendingConnectivityGen<MicroEdgesGenerator2D>(desc,descIndx,revDesc,revDescIndx,MEDCouplingFastNbrer);
704 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::explodeMeshIntoMicroEdges : Only 2D and 3D supported !");
709 * Creates a new MEDCouplingUMesh containing cells, of dimension one less than \a
710 * this->getMeshDimension(), that bound cells of \a this mesh. In
711 * addition arrays describing correspondence between cells of \a this and the result
712 * meshes are returned. The arrays \a desc and \a descIndx (\ref numbering-indirect) describe the descending
713 * connectivity, i.e. enumerate cells of the result mesh bounding each cell of \a this
714 * mesh. This method differs from buildDescendingConnectivity() in that apart
715 * from cell ids, \a desc returns mutual orientation of cells in \a this and the
716 * result meshes. So a positive id means that order of nodes in corresponding cells
717 * of two meshes is same, and a negative id means a reverse order of nodes. Since a
718 * cell with id #0 can't be negative, the array \a desc returns ids in FORTRAN mode,
719 * i.e. cell ids are one-based.
720 * Arrays \a revDesc and \a revDescIndx (\ref numbering-indirect) describe the reverse descending connectivity,
721 * i.e. enumerate cells of \a this mesh bounded by each cell of the result mesh.
722 * \warning For speed reasons, this method does not check if node ids in the nodal
723 * connectivity correspond to the size of node coordinates array.
724 * \warning Cells of the result mesh are \b not sorted by geometric type, hence,
725 * to write this mesh to the MED file, its cells must be sorted using
726 * sortCellsInMEDFileFrmt().
727 * \param [in,out] desc - the array containing cell ids of the result mesh bounding
728 * each cell of \a this mesh.
729 * \param [in,out] descIndx - the array, of length \a this->getNumberOfCells() + 1,
730 * dividing cell ids in \a desc into groups each referring to one
731 * cell of \a this mesh. Its every element (except the last one) is an index
732 * pointing to the first id of a group of cells. For example cells of the
733 * result mesh bounding the cell #1 of \a this mesh are described by following
735 * [ \a descIndx[1], \a descIndx[2] ) and the cell ids are
736 * \a desc[ \a descIndx[1] ], \a desc[ \a descIndx[1] + 1], ...
737 * Number of cells of the result mesh sharing the *i*-th cell of \a this mesh is
738 * \a descIndx[ *i*+1 ] - \a descIndx[ *i* ].
739 * \param [in,out] revDesc - the array containing cell ids of \a this mesh bounded
740 * by each cell of the result mesh.
741 * \param [in,out] revDescIndx - the array, of length one more than number of cells
742 * in the result mesh,
743 * dividing cell ids in \a revDesc into groups each referring to one
744 * cell of the result mesh the same way as \a descIndx divides \a desc.
745 * \return MEDCouplingUMesh * - a new instance of MEDCouplingUMesh. This result mesh
746 * shares the node coordinates array with \a this mesh. The caller is to
747 * delete this mesh using decrRef() as it is no more needed.
748 * \throw If the coordinates array is not set.
749 * \throw If the nodal connectivity of cells is node defined.
750 * \throw If \a desc == NULL || \a descIndx == NULL || \a revDesc == NULL || \a
751 * revDescIndx == NULL.
753 * \if ENABLE_EXAMPLES
754 * \ref cpp_mcumesh_buildDescendingConnectivity2 "Here is a C++ example".<br>
755 * \ref py_mcumesh_buildDescendingConnectivity2 "Here is a Python example".
757 * \sa buildDescendingConnectivity()
759 MEDCouplingUMesh *MEDCouplingUMesh::buildDescendingConnectivity2(DataArrayInt *desc, DataArrayInt *descIndx, DataArrayInt *revDesc, DataArrayInt *revDescIndx) const
761 return buildDescendingConnectivityGen<MinusOneSonsGenerator>(desc,descIndx,revDesc,revDescIndx,MEDCouplingOrientationSensitiveNbrer);
765 * \b WARNING this method do the assumption that connectivity lies on the coordinates set.
766 * For speed reasons no check of this will be done. This method calls
767 * MEDCouplingUMesh::buildDescendingConnectivity to compute the result.
768 * This method lists cell by cell in \b this which are its neighbors. To compute the result
769 * only connectivities are considered.
770 * The neighbor cells of cell having id 'cellId' are neighbors[neighborsIndx[cellId]:neighborsIndx[cellId+1]].
771 * The format of return is hence \ref numbering-indirect.
773 * \param [out] neighbors is an array storing all the neighbors of all cells in \b this. This array is newly
774 * allocated and should be dealt by the caller. \b neighborsIndx 2nd output
775 * parameter allows to select the right part in this array (\ref numbering-indirect). The number of tuples
776 * is equal to the last values in \b neighborsIndx.
777 * \param [out] neighborsIndx is an array of size this->getNumberOfCells()+1 newly allocated and should be
778 * dealt by the caller. This arrays allow to use the first output parameter \b neighbors (\ref numbering-indirect).
780 void MEDCouplingUMesh::computeNeighborsOfCells(DataArrayInt *&neighbors, DataArrayInt *&neighborsIndx) const
782 MCAuto<DataArrayInt> desc=DataArrayInt::New();
783 MCAuto<DataArrayInt> descIndx=DataArrayInt::New();
784 MCAuto<DataArrayInt> revDesc=DataArrayInt::New();
785 MCAuto<DataArrayInt> revDescIndx=DataArrayInt::New();
786 MCAuto<MEDCouplingUMesh> meshDM1=buildDescendingConnectivity(desc,descIndx,revDesc,revDescIndx);
788 ComputeNeighborsOfCellsAdv(desc,descIndx,revDesc,revDescIndx,neighbors,neighborsIndx);
791 void MEDCouplingUMesh::computeCellNeighborhoodFromNodesOne(const DataArrayInt *nodeNeigh, const DataArrayInt *nodeNeighI, MCAuto<DataArrayInt>& cellNeigh, MCAuto<DataArrayInt>& cellNeighIndex) const
793 if(!nodeNeigh || !nodeNeighI)
794 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::computeCellNeighborhoodFromNodesOne : null pointer !");
795 checkConsistencyLight();
796 nodeNeigh->checkAllocated(); nodeNeighI->checkAllocated();
797 nodeNeigh->checkNbOfComps(1,"MEDCouplingUMesh::computeCellNeighborhoodFromNodesOne : node neigh");
798 nodeNeighI->checkNbOfComps(1,"MEDCouplingUMesh::computeCellNeighborhoodFromNodesOne : node neigh index");
799 nodeNeighI->checkNbOfTuples(1+getNumberOfNodes(),"MEDCouplingUMesh::computeCellNeighborhoodFromNodesOne : invalid length");
800 int nbCells(getNumberOfCells());
801 const int *c(_nodal_connec->begin()),*ci(_nodal_connec_index->begin()),*ne(nodeNeigh->begin()),*nei(nodeNeighI->begin());
802 cellNeigh=DataArrayInt::New(); cellNeigh->alloc(0,1); cellNeighIndex=DataArrayInt::New(); cellNeighIndex->alloc(1,1); cellNeighIndex->setIJ(0,0,0);
803 for(int i=0;i<nbCells;i++)
806 for(const int *it=c+ci[i]+1;it!=c+ci[i+1];it++)
808 s.insert(ne+nei[*it],ne+nei[*it+1]);
810 cellNeigh->insertAtTheEnd(s.begin(),s.end());
811 cellNeighIndex->pushBackSilent(cellNeigh->getNumberOfTuples());
816 * This method is called by MEDCouplingUMesh::computeNeighborsOfCells. This methods performs the algorithm
817 * of MEDCouplingUMesh::computeNeighborsOfCells.
818 * This method is useful for users that want to reduce along a criterion the set of neighbours cell. This is
819 * typically the case to extract a set a neighbours,
820 * excluding a set of meshdim-1 cells in input descending connectivity.
821 * Typically \b desc, \b descIndx, \b revDesc and \b revDescIndx (\ref numbering-indirect) input params are
822 * the result of MEDCouplingUMesh::buildDescendingConnectivity.
823 * This method lists cell by cell in \b this which are its neighbors. To compute the result only connectivities
825 * The neighbor cells of cell having id 'cellId' are neighbors[neighborsIndx[cellId]:neighborsIndx[cellId+1]].
827 * \param [in] desc descending connectivity array.
828 * \param [in] descIndx descending connectivity index array used to walk through \b desc (\ref numbering-indirect).
829 * \param [in] revDesc reverse descending connectivity array.
830 * \param [in] revDescIndx reverse descending connectivity index array used to walk through \b revDesc (\ref numbering-indirect).
831 * \param [out] neighbors is an array storing all the neighbors of all cells in \b this. This array is newly allocated and should be dealt by the caller. \b neighborsIndx 2nd output
832 * parameter allows to select the right part in this array. The number of tuples is equal to the last values in \b neighborsIndx.
833 * \param [out] neighborsIndx is an array of size this->getNumberOfCells()+1 newly allocated and should be dealt by the caller. This arrays allow to use the first output parameter \b neighbors.
835 void MEDCouplingUMesh::ComputeNeighborsOfCellsAdv(const DataArrayInt *desc, const DataArrayInt *descIndx, const DataArrayInt *revDesc, const DataArrayInt *revDescIndx,
836 DataArrayInt *&neighbors, DataArrayInt *&neighborsIndx)
838 if(!desc || !descIndx || !revDesc || !revDescIndx)
839 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ComputeNeighborsOfCellsAdv some input array is empty !");
840 const int *descPtr=desc->begin();
841 const int *descIPtr=descIndx->begin();
842 const int *revDescPtr=revDesc->begin();
843 const int *revDescIPtr=revDescIndx->begin();
845 int nbCells=descIndx->getNumberOfTuples()-1;
846 MCAuto<DataArrayInt> out0=DataArrayInt::New();
847 MCAuto<DataArrayInt> out1=DataArrayInt::New(); out1->alloc(nbCells+1,1);
848 int *out1Ptr=out1->getPointer();
850 out0->reserve(desc->getNumberOfTuples());
851 for(int i=0;i<nbCells;i++,descIPtr++,out1Ptr++)
853 for(const int *w1=descPtr+descIPtr[0];w1!=descPtr+descIPtr[1];w1++)
855 std::set<int> s(revDescPtr+revDescIPtr[*w1],revDescPtr+revDescIPtr[(*w1)+1]);
857 out0->insertAtTheEnd(s.begin(),s.end());
859 *out1Ptr=out0->getNumberOfTuples();
861 neighbors=out0.retn();
862 neighborsIndx=out1.retn();
866 * Explodes \a this into edges whatever its dimension.
868 MCAuto<MEDCouplingUMesh> MEDCouplingUMesh::explodeIntoEdges(MCAuto<DataArrayInt>& desc, MCAuto<DataArrayInt>& descIndex, MCAuto<DataArrayInt>& revDesc, MCAuto<DataArrayInt>& revDescIndx) const
871 int mdim(getMeshDimension());
872 desc=DataArrayInt::New(); descIndex=DataArrayInt::New(); revDesc=DataArrayInt::New(); revDescIndx=DataArrayInt::New();
873 MCAuto<MEDCouplingUMesh> mesh1D;
878 mesh1D=explode3DMeshTo1D(desc,descIndex,revDesc,revDescIndx);
883 mesh1D=buildDescendingConnectivity(desc,descIndex,revDesc,revDescIndx);
888 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::computeNeighborsOfNodes : Mesh dimension supported are [3,2] !");
895 * \b WARNING this method do the assumption that connectivity lies on the coordinates set.
896 * For speed reasons no check of this will be done. This method calls
897 * MEDCouplingUMesh::buildDescendingConnectivity to compute the result.
898 * This method lists node by node in \b this which are its neighbors. To compute the result
899 * only connectivities are considered.
900 * The neighbor nodes of node having id 'nodeId' are neighbors[neighborsIndx[cellId]:neighborsIndx[cellId+1]].
902 * \param [out] neighbors is an array storing all the neighbors of all nodes in \b this. This array
903 * is newly allocated and should be dealt by the caller. \b neighborsIndx 2nd output
904 * parameter allows to select the right part in this array (\ref numbering-indirect).
905 * The number of tuples is equal to the last values in \b neighborsIndx.
906 * \param [out] neighborsIdx is an array of size this->getNumberOfCells()+1 newly allocated and should
907 * be dealt by the caller. This arrays allow to use the first output parameter \b neighbors.
909 * \sa MEDCouplingUMesh::computeEnlargedNeighborsOfNodes
911 void MEDCouplingUMesh::computeNeighborsOfNodes(DataArrayInt *&neighbors, DataArrayInt *&neighborsIdx) const
914 int mdim(getMeshDimension()),nbNodes(getNumberOfNodes());
915 MCAuto<DataArrayInt> desc(DataArrayInt::New()),descIndx(DataArrayInt::New()),revDesc(DataArrayInt::New()),revDescIndx(DataArrayInt::New());
916 MCConstAuto<MEDCouplingUMesh> mesh1D;
921 mesh1D=explode3DMeshTo1D(desc,descIndx,revDesc,revDescIndx);
926 mesh1D=buildDescendingConnectivity(desc,descIndx,revDesc,revDescIndx);
931 mesh1D.takeRef(this);
936 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::computeNeighborsOfNodes : Mesh dimension supported are [3,2,1] !");
939 desc=DataArrayInt::New(); descIndx=DataArrayInt::New(); revDesc=0; revDescIndx=0;
940 mesh1D->getReverseNodalConnectivity(desc,descIndx);
941 MCAuto<DataArrayInt> ret0(DataArrayInt::New());
942 ret0->alloc(desc->getNumberOfTuples(),1);
943 int *r0Pt(ret0->getPointer());
944 const int *c1DPtr(mesh1D->getNodalConnectivity()->begin()),*rn(desc->begin()),*rni(descIndx->begin());
945 for(int i=0;i<nbNodes;i++,rni++)
947 for(const int *oneDCellIt=rn+rni[0];oneDCellIt!=rn+rni[1];oneDCellIt++)
948 *r0Pt++=c1DPtr[3*(*oneDCellIt)+1]==i?c1DPtr[3*(*oneDCellIt)+2]:c1DPtr[3*(*oneDCellIt)+1];
950 neighbors=ret0.retn();
951 neighborsIdx=descIndx.retn();
955 * Computes enlarged neighbors for each nodes in \a this. The behavior of this method is close to MEDCouplingUMesh::computeNeighborsOfNodes except that the neighborhood of each node is wider here.
956 * A node j is considered to be in the neighborhood of i if and only if there is a cell in \a this containing in its nodal connectivity both i and j.
957 * This method is useful to find ghost cells of a part of a mesh with a code based on fields on nodes.
959 * \sa MEDCouplingUMesh::computeNeighborsOfNodes
961 void MEDCouplingUMesh::computeEnlargedNeighborsOfNodes(MCAuto<DataArrayInt> &neighbors, MCAuto<DataArrayInt>& neighborsIdx) const
964 int nbOfNodes(getNumberOfNodes());
965 const int *conn(_nodal_connec->begin()),*connIndex(_nodal_connec_index->begin());
966 int nbOfCells(getNumberOfCells());
967 std::vector< std::set<int> > st0(nbOfNodes);
968 for(int eltId=0;eltId<nbOfCells;eltId++)
970 const int *strtNdlConnOfCurCell(conn+connIndex[eltId]+1),*endNdlConnOfCurCell(conn+connIndex[eltId+1]);
971 std::set<int> s(strtNdlConnOfCurCell,endNdlConnOfCurCell); s.erase(-1); //for polyhedrons
972 for(std::set<int>::const_iterator iter2=s.begin();iter2!=s.end();iter2++)
973 st0[*iter2].insert(s.begin(),s.end());
975 neighborsIdx=DataArrayInt::New(); neighborsIdx->alloc(nbOfNodes+1,1); neighborsIdx->setIJ(0,0,0);
977 int *neighIdx(neighborsIdx->getPointer());
978 for(std::vector< std::set<int> >::const_iterator it=st0.begin();it!=st0.end();it++,neighIdx++)
981 neighIdx[1]=neighIdx[0];
983 neighIdx[1]=neighIdx[0]+(*it).size()-1;
986 neighbors=DataArrayInt::New(); neighbors->alloc(neighborsIdx->back(),1);
988 const int *neighIdx(neighborsIdx->begin());
989 int *neigh(neighbors->getPointer()),nodeId(0);
990 for(std::vector< std::set<int> >::const_iterator it=st0.begin();it!=st0.end();it++,neighIdx++,nodeId++)
992 std::set<int> s(*it); s.erase(nodeId);
993 std::copy(s.begin(),s.end(),neigh+*neighIdx);
999 * Converts specified cells to either polygons (if \a this is a 2D mesh) or
1000 * polyhedrons (if \a this is a 3D mesh). The cells to convert are specified by an
1001 * array of cell ids. Pay attention that after conversion all algorithms work slower
1002 * with \a this mesh than before conversion. <br> If an exception is thrown during the
1003 * conversion due presence of invalid ids in the array of cells to convert, as a
1004 * result \a this mesh contains some already converted elements. In this case the 2D
1005 * mesh remains valid but 3D mesh becomes \b inconsistent!
1006 * \warning This method can significantly modify the order of geometric types in \a this,
1007 * hence, to write this mesh to the MED file, its cells must be sorted using
1008 * sortCellsInMEDFileFrmt().
1009 * \param [in] cellIdsToConvertBg - the array holding ids of cells to convert.
1010 * \param [in] cellIdsToConvertEnd - a pointer to the last-plus-one-th element of \a
1011 * cellIdsToConvertBg.
1012 * \throw If the coordinates array is not set.
1013 * \throw If the nodal connectivity of cells is node defined.
1014 * \throw If dimension of \a this mesh is not either 2 or 3.
1016 * \if ENABLE_EXAMPLES
1017 * \ref cpp_mcumesh_convertToPolyTypes "Here is a C++ example".<br>
1018 * \ref py_mcumesh_convertToPolyTypes "Here is a Python example".
1021 void MEDCouplingUMesh::convertToPolyTypes(const int *cellIdsToConvertBg, const int *cellIdsToConvertEnd)
1023 checkFullyDefined();
1024 int dim=getMeshDimension();
1026 throw INTERP_KERNEL::Exception("Invalid mesh dimension : must be 2 or 3 !");
1027 int nbOfCells(getNumberOfCells());
1030 const int *connIndex=_nodal_connec_index->begin();
1031 int *conn=_nodal_connec->getPointer();
1032 for(const int *iter=cellIdsToConvertBg;iter!=cellIdsToConvertEnd;iter++)
1034 if(*iter>=0 && *iter<nbOfCells)
1036 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[connIndex[*iter]]);
1037 if(!cm.isQuadratic())
1038 conn[connIndex[*iter]]=INTERP_KERNEL::NORM_POLYGON;
1040 conn[connIndex[*iter]]=INTERP_KERNEL::NORM_QPOLYG;
1044 std::ostringstream oss; oss << "MEDCouplingUMesh::convertToPolyTypes : On rank #" << std::distance(cellIdsToConvertBg,iter) << " value is " << *iter << " which is not";
1045 oss << " in range [0," << nbOfCells << ") !";
1046 throw INTERP_KERNEL::Exception(oss.str());
1052 int *connIndex(_nodal_connec_index->getPointer());
1053 const int *connOld(_nodal_connec->getConstPointer());
1054 MCAuto<DataArrayInt> connNew(DataArrayInt::New()),connNewI(DataArrayInt::New()); connNew->alloc(0,1); connNewI->alloc(1,1); connNewI->setIJ(0,0,0);
1055 std::vector<bool> toBeDone(nbOfCells,false);
1056 for(const int *iter=cellIdsToConvertBg;iter!=cellIdsToConvertEnd;iter++)
1058 if(*iter>=0 && *iter<nbOfCells)
1059 toBeDone[*iter]=true;
1062 std::ostringstream oss; oss << "MEDCouplingUMesh::convertToPolyTypes : On rank #" << std::distance(cellIdsToConvertBg,iter) << " value is " << *iter << " which is not";
1063 oss << " in range [0," << nbOfCells << ") !";
1064 throw INTERP_KERNEL::Exception(oss.str());
1067 for(int cellId=0;cellId<nbOfCells;cellId++)
1069 int pos(connIndex[cellId]),posP1(connIndex[cellId+1]);
1070 int lgthOld(posP1-pos-1);
1071 if(toBeDone[cellId])
1073 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)connOld[pos]);
1074 unsigned nbOfFaces(cm.getNumberOfSons2(connOld+pos+1,lgthOld));
1075 int *tmp(new int[nbOfFaces*lgthOld+1]);
1076 int *work=tmp; *work++=INTERP_KERNEL::NORM_POLYHED;
1077 for(unsigned j=0;j<nbOfFaces;j++)
1079 INTERP_KERNEL::NormalizedCellType type;
1080 unsigned offset=cm.fillSonCellNodalConnectivity2(j,connOld+pos+1,lgthOld,work,type);
1084 std::size_t newLgth(std::distance(tmp,work)-1);//-1 for last -1
1085 connNew->pushBackValsSilent(tmp,tmp+newLgth);
1086 connNewI->pushBackSilent(connNewI->back()+(int)newLgth);
1091 connNew->pushBackValsSilent(connOld+pos,connOld+posP1);
1092 connNewI->pushBackSilent(connNewI->back()+posP1-pos);
1095 setConnectivity(connNew,connNewI,false);//false because computeTypes called just behind.
1101 * Converts all cells to either polygons (if \a this is a 2D mesh) or
1102 * polyhedrons (if \a this is a 3D mesh).
1103 * \warning As this method is purely for user-friendliness and no optimization is
1104 * done to avoid construction of a useless vector, this method can be costly
1106 * \throw If the coordinates array is not set.
1107 * \throw If the nodal connectivity of cells is node defined.
1108 * \throw If dimension of \a this mesh is not either 2 or 3.
1110 void MEDCouplingUMesh::convertAllToPoly()
1112 int nbOfCells=getNumberOfCells();
1113 std::vector<int> cellIds(nbOfCells);
1114 for(int i=0;i<nbOfCells;i++)
1116 convertToPolyTypes(&cellIds[0],&cellIds[0]+cellIds.size());
1120 * Fixes nodal connectivity of invalid cells of type NORM_POLYHED. This method
1121 * expects that all NORM_POLYHED cells have connectivity similar to that of prismatic
1122 * volumes like NORM_HEXA8, NORM_PENTA6 etc., i.e. the first half of nodes describes a
1123 * base facet of the volume and the second half of nodes describes an opposite facet
1124 * having the same number of nodes as the base one. This method converts such
1125 * connectivity to a valid polyhedral format where connectivity of each facet is
1126 * explicitly described and connectivity of facets are separated by -1. If \a this mesh
1127 * contains a NORM_POLYHED cell with a valid connectivity, or an invalid connectivity is
1128 * not as expected, an exception is thrown and the mesh remains unchanged. Care of
1129 * a correct orientation of the first facet of a polyhedron, else orientation of a
1130 * corrected cell is reverse.<br>
1131 * This method is useful to build an extruded unstructured mesh with polyhedrons as
1132 * it releases the user from boring description of polyhedra connectivity in the valid
1134 * \throw If \a this->getMeshDimension() != 3.
1135 * \throw If \a this->getSpaceDimension() != 3.
1136 * \throw If the nodal connectivity of cells is not defined.
1137 * \throw If the coordinates array is not set.
1138 * \throw If \a this mesh contains polyhedrons with the valid connectivity.
1139 * \throw If \a this mesh contains polyhedrons with odd number of nodes.
1141 * \if ENABLE_EXAMPLES
1142 * \ref cpp_mcumesh_arePolyhedronsNotCorrectlyOriented "Here is a C++ example".<br>
1143 * \ref py_mcumesh_arePolyhedronsNotCorrectlyOriented "Here is a Python example".
1146 void MEDCouplingUMesh::convertExtrudedPolyhedra()
1148 checkFullyDefined();
1149 if(getMeshDimension()!=3 || getSpaceDimension()!=3)
1150 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertExtrudedPolyhedra works on umeshes with meshdim equal to 3 and spaceDim equal to 3 too!");
1151 int nbOfCells=getNumberOfCells();
1152 MCAuto<DataArrayInt> newCi=DataArrayInt::New();
1153 newCi->alloc(nbOfCells+1,1);
1154 int *newci=newCi->getPointer();
1155 const int *ci=_nodal_connec_index->getConstPointer();
1156 const int *c=_nodal_connec->getConstPointer();
1158 for(int i=0;i<nbOfCells;i++)
1160 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)c[ci[i]];
1161 if(type==INTERP_KERNEL::NORM_POLYHED)
1163 if(std::count(c+ci[i]+1,c+ci[i+1],-1)!=0)
1165 std::ostringstream oss; oss << "MEDCouplingUMesh::convertExtrudedPolyhedra : cell # " << i << " is a polhedron BUT it has NOT exactly 1 face !";
1166 throw INTERP_KERNEL::Exception(oss.str());
1168 std::size_t n2=std::distance(c+ci[i]+1,c+ci[i+1]);
1171 std::ostringstream oss; oss << "MEDCouplingUMesh::convertExtrudedPolyhedra : cell # " << i << " is a polhedron with 1 face but there is a mismatch of number of nodes in face should be even !";
1172 throw INTERP_KERNEL::Exception(oss.str());
1175 newci[i+1]=7*n1+2+newci[i];//6*n1 (nodal length) + n1+2 (number of faces) - 1 (number of '-1' separator is equal to number of faces -1) + 1 (for cell type)
1178 newci[i+1]=(ci[i+1]-ci[i])+newci[i];
1180 MCAuto<DataArrayInt> newC=DataArrayInt::New();
1181 newC->alloc(newci[nbOfCells],1);
1182 int *newc=newC->getPointer();
1183 for(int i=0;i<nbOfCells;i++)
1185 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)c[ci[i]];
1186 if(type==INTERP_KERNEL::NORM_POLYHED)
1188 std::size_t n1=std::distance(c+ci[i]+1,c+ci[i+1])/2;
1189 newc=std::copy(c+ci[i],c+ci[i]+n1+1,newc);
1191 for(std::size_t j=0;j<n1;j++)
1193 newc[j]=c[ci[i]+1+n1+(n1-j)%n1];
1195 newc[n1+5*j+1]=c[ci[i]+1+j];
1196 newc[n1+5*j+2]=c[ci[i]+1+j+n1];
1197 newc[n1+5*j+3]=c[ci[i]+1+(j+1)%n1+n1];
1198 newc[n1+5*j+4]=c[ci[i]+1+(j+1)%n1];
1203 newc=std::copy(c+ci[i],c+ci[i+1],newc);
1205 _nodal_connec_index->decrRef(); _nodal_connec_index=newCi.retn();
1206 _nodal_connec->decrRef(); _nodal_connec=newC.retn();
1211 * Converts all polygons (if \a this is a 2D mesh) or polyhedrons (if \a this is a 3D
1212 * mesh) to cells of classical types. This method is opposite to convertToPolyTypes().
1213 * \warning Cells of the result mesh are \b not sorted by geometric type, hence,
1214 * to write this mesh to the MED file, its cells must be sorted using
1215 * sortCellsInMEDFileFrmt().
1216 * \warning Cells (and most notably polyhedrons) must be correctly oriented for this to work
1217 * properly. See orientCorrectlyPolyhedrons() and arePolyhedronsNotCorrectlyOriented().
1218 * \return \c true if at least one cell has been converted, \c false else. In the
1219 * last case the nodal connectivity remains unchanged.
1220 * \throw If the coordinates array is not set.
1221 * \throw If the nodal connectivity of cells is not defined.
1222 * \throw If \a this->getMeshDimension() < 0.
1224 bool MEDCouplingUMesh::unPolyze()
1226 checkFullyDefined();
1227 int mdim=getMeshDimension();
1229 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::unPolyze works on umeshes with meshdim equals to 0, 1 2 or 3 !");
1232 int nbOfCells=getNumberOfCells();
1235 int initMeshLgth=getNodalConnectivityArrayLen();
1236 int *conn=_nodal_connec->getPointer();
1237 int *index=_nodal_connec_index->getPointer();
1242 for(int i=0;i<nbOfCells;i++)
1244 lgthOfCurCell=index[i+1]-posOfCurCell;
1245 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)conn[posOfCurCell];
1246 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(type);
1247 INTERP_KERNEL::NormalizedCellType newType=INTERP_KERNEL::NORM_ERROR;
1251 switch(cm.getDimension())
1255 INTERP_KERNEL::AutoPtr<int> tmp=new int[lgthOfCurCell-1];
1256 std::copy(conn+posOfCurCell+1,conn+posOfCurCell+lgthOfCurCell,(int *)tmp);
1257 newType=INTERP_KERNEL::CellSimplify::tryToUnPoly2D(cm.isQuadratic(),tmp,lgthOfCurCell-1,conn+newPos+1,newLgth);
1262 int nbOfFaces,lgthOfPolyhConn;
1263 INTERP_KERNEL::AutoPtr<int> zipFullReprOfPolyh=INTERP_KERNEL::CellSimplify::getFullPolyh3DCell(type,conn+posOfCurCell+1,lgthOfCurCell-1,nbOfFaces,lgthOfPolyhConn);
1264 newType=INTERP_KERNEL::CellSimplify::tryToUnPoly3D(zipFullReprOfPolyh,nbOfFaces,lgthOfPolyhConn,conn+newPos+1,newLgth);
1269 newType=(lgthOfCurCell==3)?INTERP_KERNEL::NORM_SEG2:INTERP_KERNEL::NORM_POLYL;
1273 ret=ret || (newType!=type);
1274 conn[newPos]=newType;
1276 posOfCurCell=index[i+1];
1281 std::copy(conn+posOfCurCell,conn+posOfCurCell+lgthOfCurCell,conn+newPos);
1282 newPos+=lgthOfCurCell;
1283 posOfCurCell+=lgthOfCurCell;
1287 if(newPos!=initMeshLgth)
1288 _nodal_connec->reAlloc(newPos);
1295 * This method expects that spaceDimension is equal to 3 and meshDimension equal to 3.
1296 * This method performs operation only on polyhedrons in \b this. If no polyhedrons exists in \b this, \b this remains unchanged.
1297 * This method allows to merge if any coplanar 3DSurf cells that may appear in some polyhedrons cells.
1299 * \param [in] eps is a relative precision that allows to establish if some 3D plane are coplanar or not. This epsilon is used to recenter around origin to have maximal
1302 void MEDCouplingUMesh::simplifyPolyhedra(double eps)
1304 checkFullyDefined();
1305 if(getMeshDimension()!=3 || getSpaceDimension()!=3)
1306 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::simplifyPolyhedra : works on meshdimension 3 and spaceDimension 3 !");
1307 MCAuto<DataArrayDouble> coords=getCoords()->deepCopy();
1308 coords->recenterForMaxPrecision(eps);
1310 int nbOfCells=getNumberOfCells();
1311 const int *conn=_nodal_connec->getConstPointer();
1312 const int *index=_nodal_connec_index->getConstPointer();
1313 MCAuto<DataArrayInt> connINew=DataArrayInt::New();
1314 connINew->alloc(nbOfCells+1,1);
1315 int *connINewPtr=connINew->getPointer(); *connINewPtr++=0;
1316 MCAuto<DataArrayInt> connNew=DataArrayInt::New(); connNew->alloc(0,1);
1317 MCAuto<DataArrayInt> E_Fi(DataArrayInt::New()), E_F(DataArrayInt::New()), F_Ei(DataArrayInt::New()), F_E(DataArrayInt::New());
1318 MCAuto<MEDCouplingUMesh> m_faces(buildDescendingConnectivity(E_F, E_Fi, F_E, F_Ei));
1320 for(int i=0;i<nbOfCells;i++,connINewPtr++)
1322 if(conn[index[i]]==(int)INTERP_KERNEL::NORM_POLYHED)
1324 SimplifyPolyhedronCell(eps,coords, i,connNew, m_faces, E_Fi, E_F, F_Ei, F_E);
1328 connNew->insertAtTheEnd(conn+index[i],conn+index[i+1]);
1329 *connINewPtr=connNew->getNumberOfTuples();
1332 setConnectivity(connNew,connINew,false);
1336 * This method returns all node ids used in the connectivity of \b this. The data array returned has to be dealt by the caller.
1337 * The returned node ids are sorted ascendingly. This method is close to MEDCouplingUMesh::getNodeIdsInUse except
1338 * the format of the returned DataArrayInt instance.
1340 * \return a newly allocated DataArrayInt sorted ascendingly of fetched node ids.
1341 * \sa MEDCouplingUMesh::getNodeIdsInUse, areAllNodesFetched
1343 DataArrayInt *MEDCouplingUMesh::computeFetchedNodeIds() const
1345 checkConnectivityFullyDefined();
1346 const int *maxEltPt(std::max_element(_nodal_connec->begin(),_nodal_connec->end()));
1347 int maxElt(maxEltPt==_nodal_connec->end()?0:std::abs(*maxEltPt)+1);
1348 std::vector<bool> retS(maxElt,false);
1349 computeNodeIdsAlg(retS);
1350 return DataArrayInt::BuildListOfSwitchedOn(retS);
1354 * \param [in,out] nodeIdsInUse an array of size typically equal to nbOfNodes.
1355 * \sa MEDCouplingUMesh::getNodeIdsInUse, areAllNodesFetched
1357 void MEDCouplingUMesh::computeNodeIdsAlg(std::vector<bool>& nodeIdsInUse) const
1359 int nbOfNodes((int)nodeIdsInUse.size()),nbOfCells(getNumberOfCells());
1360 const int *connIndex(_nodal_connec_index->getConstPointer()),*conn(_nodal_connec->getConstPointer());
1361 for(int i=0;i<nbOfCells;i++)
1362 for(int j=connIndex[i]+1;j<connIndex[i+1];j++)
1365 if(conn[j]<nbOfNodes)
1366 nodeIdsInUse[conn[j]]=true;
1369 std::ostringstream oss; oss << "MEDCouplingUMesh::computeNodeIdsAlg : In cell #" << i << " presence of node id " << conn[j] << " not in [0," << nbOfNodes << ") !";
1370 throw INTERP_KERNEL::Exception(oss.str());
1377 struct MEDCouplingAccVisit
1379 MEDCouplingAccVisit():_new_nb_of_nodes(0) { }
1380 int operator()(int val) { if(val!=-1) return _new_nb_of_nodes++; else return -1; }
1381 int _new_nb_of_nodes;
1387 * Finds nodes not used in any cell and returns an array giving a new id to every node
1388 * by excluding the unused nodes, for which the array holds -1. The result array is
1389 * a mapping in "Old to New" mode.
1390 * \param [out] nbrOfNodesInUse - number of node ids present in the nodal connectivity.
1391 * \return DataArrayInt * - a new instance of DataArrayInt. Its length is \a
1392 * this->getNumberOfNodes(). It holds for each node of \a this mesh either -1
1393 * if the node is unused or a new id else. The caller is to delete this
1394 * array using decrRef() as it is no more needed.
1395 * \throw If the coordinates array is not set.
1396 * \throw If the nodal connectivity of cells is not defined.
1397 * \throw If the nodal connectivity includes an invalid id.
1399 * \if ENABLE_EXAMPLES
1400 * \ref cpp_mcumesh_getNodeIdsInUse "Here is a C++ example".<br>
1401 * \ref py_mcumesh_getNodeIdsInUse "Here is a Python example".
1403 * \sa computeFetchedNodeIds, computeNodeIdsAlg()
1405 DataArrayInt *MEDCouplingUMesh::getNodeIdsInUse(int& nbrOfNodesInUse) const
1408 int nbOfNodes(getNumberOfNodes());
1409 MCAuto<DataArrayInt> ret=DataArrayInt::New();
1410 ret->alloc(nbOfNodes,1);
1411 int *traducer=ret->getPointer();
1412 std::fill(traducer,traducer+nbOfNodes,-1);
1413 int nbOfCells=getNumberOfCells();
1414 const int *connIndex=_nodal_connec_index->getConstPointer();
1415 const int *conn=_nodal_connec->getConstPointer();
1416 for(int i=0;i<nbOfCells;i++)
1417 for(int j=connIndex[i]+1;j<connIndex[i+1];j++)
1420 if(conn[j]<nbOfNodes)
1421 traducer[conn[j]]=1;
1424 std::ostringstream oss; oss << "MEDCouplingUMesh::getNodeIdsInUse : In cell #" << i << " presence of node id " << conn[j] << " not in [0," << nbOfNodes << ") !";
1425 throw INTERP_KERNEL::Exception(oss.str());
1428 nbrOfNodesInUse=(int)std::count(traducer,traducer+nbOfNodes,1);
1429 std::transform(traducer,traducer+nbOfNodes,traducer,MEDCouplingAccVisit());
1434 * This method returns a newly allocated array containing this->getNumberOfCells() tuples and 1 component.
1435 * For each cell in \b this the number of nodes constituting cell is computed.
1436 * For each polyhedron cell, the sum of the number of nodes of each face constituting polyhedron cell is returned.
1437 * So for pohyhedrons some nodes can be counted several times in the returned result.
1439 * \return a newly allocated array
1440 * \sa MEDCouplingUMesh::computeEffectiveNbOfNodesPerCell
1442 DataArrayInt *MEDCouplingUMesh::computeNbOfNodesPerCell() const
1444 checkConnectivityFullyDefined();
1445 int nbOfCells=getNumberOfCells();
1446 MCAuto<DataArrayInt> ret=DataArrayInt::New();
1447 ret->alloc(nbOfCells,1);
1448 int *retPtr=ret->getPointer();
1449 const int *conn=getNodalConnectivity()->getConstPointer();
1450 const int *connI=getNodalConnectivityIndex()->getConstPointer();
1451 for(int i=0;i<nbOfCells;i++,retPtr++)
1453 if(conn[connI[i]]!=(int)INTERP_KERNEL::NORM_POLYHED)
1454 *retPtr=connI[i+1]-connI[i]-1;
1456 *retPtr=connI[i+1]-connI[i]-1-std::count(conn+connI[i]+1,conn+connI[i+1],-1);
1462 * This method computes effective number of nodes per cell. That is to say nodes appearing several times in nodal connectivity of a cell,
1463 * will be counted only once here whereas it will be counted several times in MEDCouplingUMesh::computeNbOfNodesPerCell method.
1465 * \return DataArrayInt * - new object to be deallocated by the caller.
1466 * \sa MEDCouplingUMesh::computeNbOfNodesPerCell
1468 DataArrayInt *MEDCouplingUMesh::computeEffectiveNbOfNodesPerCell() const
1470 checkConnectivityFullyDefined();
1471 int nbOfCells=getNumberOfCells();
1472 MCAuto<DataArrayInt> ret=DataArrayInt::New();
1473 ret->alloc(nbOfCells,1);
1474 int *retPtr=ret->getPointer();
1475 const int *conn=getNodalConnectivity()->getConstPointer();
1476 const int *connI=getNodalConnectivityIndex()->getConstPointer();
1477 for(int i=0;i<nbOfCells;i++,retPtr++)
1479 std::set<int> s(conn+connI[i]+1,conn+connI[i+1]);
1480 if(conn[connI[i]]!=(int)INTERP_KERNEL::NORM_POLYHED)
1481 *retPtr=(int)s.size();
1485 *retPtr=(int)s.size();
1492 * This method returns a newly allocated array containing this->getNumberOfCells() tuples and 1 component.
1493 * For each cell in \b this the number of faces constituting (entity of dimension this->getMeshDimension()-1) cell is computed.
1495 * \return a newly allocated array
1497 DataArrayInt *MEDCouplingUMesh::computeNbOfFacesPerCell() const
1499 checkConnectivityFullyDefined();
1500 int nbOfCells=getNumberOfCells();
1501 MCAuto<DataArrayInt> ret=DataArrayInt::New();
1502 ret->alloc(nbOfCells,1);
1503 int *retPtr=ret->getPointer();
1504 const int *conn=getNodalConnectivity()->getConstPointer();
1505 const int *connI=getNodalConnectivityIndex()->getConstPointer();
1506 for(int i=0;i<nbOfCells;i++,retPtr++,connI++)
1508 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[*connI]);
1509 *retPtr=cm.getNumberOfSons2(conn+connI[0]+1,connI[1]-connI[0]-1);
1515 * Removes unused nodes (the node coordinates array is shorten) and returns an array
1516 * mapping between new and old node ids in "Old to New" mode. -1 values in the returned
1517 * array mean that the corresponding old node is no more used.
1518 * \return DataArrayInt * - a new instance of DataArrayInt of length \a
1519 * this->getNumberOfNodes() before call of this method. The caller is to
1520 * delete this array using decrRef() as it is no more needed.
1521 * \throw If the coordinates array is not set.
1522 * \throw If the nodal connectivity of cells is not defined.
1523 * \throw If the nodal connectivity includes an invalid id.
1524 * \sa areAllNodesFetched
1526 * \if ENABLE_EXAMPLES
1527 * \ref cpp_mcumesh_zipCoordsTraducer "Here is a C++ example".<br>
1528 * \ref py_mcumesh_zipCoordsTraducer "Here is a Python example".
1531 DataArrayInt *MEDCouplingUMesh::zipCoordsTraducer()
1533 return MEDCouplingPointSet::zipCoordsTraducer();
1537 * This method stands if 'cell1' and 'cell2' are equals regarding 'compType' policy.
1538 * The semantic of 'compType' is specified in MEDCouplingPointSet::zipConnectivityTraducer method.
1540 int MEDCouplingUMesh::AreCellsEqual(const int *conn, const int *connI, int cell1, int cell2, int compType)
1545 return AreCellsEqualPolicy0(conn,connI,cell1,cell2);
1547 return AreCellsEqualPolicy1(conn,connI,cell1,cell2);
1549 return AreCellsEqualPolicy2(conn,connI,cell1,cell2);
1551 return AreCellsEqualPolicy2NoType(conn,connI,cell1,cell2);
1553 return AreCellsEqualPolicy7(conn,connI,cell1,cell2);
1555 throw INTERP_KERNEL::Exception("Unknown comparison asked ! Must be in 0,1,2,3 or 7.");
1559 * This method is the last step of the MEDCouplingPointSet::zipConnectivityTraducer with policy 0.
1561 int MEDCouplingUMesh::AreCellsEqualPolicy0(const int *conn, const int *connI, int cell1, int cell2)
1563 if(connI[cell1+1]-connI[cell1]==connI[cell2+1]-connI[cell2])
1564 return std::equal(conn+connI[cell1]+1,conn+connI[cell1+1],conn+connI[cell2]+1)?1:0;
1569 * This method is the last step of the MEDCouplingPointSet::zipConnectivityTraducer with policy 1.
1571 int MEDCouplingUMesh::AreCellsEqualPolicy1(const int *conn, const int *connI, int cell1, int cell2)
1573 int sz=connI[cell1+1]-connI[cell1];
1574 if(sz==connI[cell2+1]-connI[cell2])
1576 if(conn[connI[cell1]]==conn[connI[cell2]])
1578 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[connI[cell1]]);
1579 unsigned dim=cm.getDimension();
1585 INTERP_KERNEL::AutoPtr<int> tmp=new int[sz1];
1586 int *work=std::copy(conn+connI[cell1]+1,conn+connI[cell1+1],(int *)tmp);
1587 std::copy(conn+connI[cell1]+1,conn+connI[cell1+1],work);
1588 work=std::search((int *)tmp,(int *)tmp+sz1,conn+connI[cell2]+1,conn+connI[cell2+1]);
1589 return work!=tmp+sz1?1:0;
1592 return std::equal(conn+connI[cell1]+1,conn+connI[cell1+1],conn+connI[cell2]+1)?1:0;//case of SEG2 and SEG3
1595 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::AreCellsEqualPolicy1 : not implemented yet for meshdim == 3 !");
1602 * This method is the last step of the MEDCouplingPointSet::zipConnectivityTraducer with policy 2.
1604 int MEDCouplingUMesh::AreCellsEqualPolicy2(const int *conn, const int *connI, int cell1, int cell2)
1606 if(connI[cell1+1]-connI[cell1]==connI[cell2+1]-connI[cell2])
1608 if(conn[connI[cell1]]==conn[connI[cell2]])
1610 std::set<int> s1(conn+connI[cell1]+1,conn+connI[cell1+1]);
1611 std::set<int> s2(conn+connI[cell2]+1,conn+connI[cell2+1]);
1619 * This method is less restrictive than AreCellsEqualPolicy2. Here the geometric type is absolutely not taken into account !
1621 int MEDCouplingUMesh::AreCellsEqualPolicy2NoType(const int *conn, const int *connI, int cell1, int cell2)
1623 if(connI[cell1+1]-connI[cell1]==connI[cell2+1]-connI[cell2])
1625 std::set<int> s1(conn+connI[cell1]+1,conn+connI[cell1+1]);
1626 std::set<int> s2(conn+connI[cell2]+1,conn+connI[cell2+1]);
1633 * This method is the last step of the MEDCouplingPointSet::zipConnectivityTraducer with policy 7.
1635 int MEDCouplingUMesh::AreCellsEqualPolicy7(const int *conn, const int *connI, int cell1, int cell2)
1637 int sz=connI[cell1+1]-connI[cell1];
1638 if(sz==connI[cell2+1]-connI[cell2])
1640 if(conn[connI[cell1]]==conn[connI[cell2]])
1642 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[connI[cell1]]);
1643 unsigned dim=cm.getDimension();
1649 INTERP_KERNEL::AutoPtr<int> tmp=new int[sz1];
1650 int *work=std::copy(conn+connI[cell1]+1,conn+connI[cell1+1],(int *)tmp);
1651 std::copy(conn+connI[cell1]+1,conn+connI[cell1+1],work);
1652 work=std::search((int *)tmp,(int *)tmp+sz1,conn+connI[cell2]+1,conn+connI[cell2+1]);
1657 std::reverse_iterator<int *> it1((int *)tmp+sz1);
1658 std::reverse_iterator<int *> it2((int *)tmp);
1659 if(std::search(it1,it2,conn+connI[cell2]+1,conn+connI[cell2+1])!=it2)
1665 return work!=tmp+sz1?1:0;
1668 {//case of SEG2 and SEG3
1669 if(std::equal(conn+connI[cell1]+1,conn+connI[cell1+1],conn+connI[cell2]+1))
1671 if(!cm.isQuadratic())
1673 std::reverse_iterator<const int *> it1(conn+connI[cell1+1]);
1674 std::reverse_iterator<const int *> it2(conn+connI[cell1]+1);
1675 if(std::equal(it1,it2,conn+connI[cell2]+1))
1681 if(conn[connI[cell1]+1]==conn[connI[cell2]+2] && conn[connI[cell1]+2]==conn[connI[cell2]+1] && conn[connI[cell1]+3]==conn[connI[cell2]+3])
1688 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::AreCellsEqualPolicy7 : not implemented yet for meshdim == 3 !");
1696 * This method find cells that are equal (regarding \a compType) in \a this. The comparison is specified
1698 * This method keeps the coordiantes of \a this. This method is time consuming.
1700 * \param [in] compType input specifying the technique used to compare cells each other.
1701 * - 0 : exactly. A cell is detected to be the same if and only if the connectivity is exactly the same without permutation and types same too. This is the strongest policy.
1702 * - 1 : permutation same orientation. cell1 and cell2 are considered equal if the connectivity of cell2 can be deduced by those of cell1 by direct permutation (with exactly the same orientation)
1703 * and their type equal. For 1D mesh the policy 1 is equivalent to 0.
1704 * - 2 : nodal. cell1 and cell2 are equal if and only if cell1 and cell2 have same type and have the same nodes constituting connectivity. This is the laziest policy. This policy
1705 * can be used for users not sensitive to orientation of cell
1706 * \param [in] startCellId specifies the cellId starting from which the equality computation will be carried out. By default it is 0, which it means that all cells in \a this will be scanned.
1707 * \param [out] commonCellsArr common cells ids (\ref numbering-indirect)
1708 * \param [out] commonCellsIArr common cells ids (\ref numbering-indirect)
1709 * \return the correspondence array old to new in a newly allocated array.
1712 void MEDCouplingUMesh::findCommonCells(int compType, int startCellId, DataArrayInt *& commonCellsArr, DataArrayInt *& commonCellsIArr) const
1714 MCAuto<DataArrayInt> revNodal=DataArrayInt::New(),revNodalI=DataArrayInt::New();
1715 getReverseNodalConnectivity(revNodal,revNodalI);
1716 FindCommonCellsAlg(compType,startCellId,_nodal_connec,_nodal_connec_index,revNodal,revNodalI,commonCellsArr,commonCellsIArr);
1719 void MEDCouplingUMesh::FindCommonCellsAlg(int compType, int startCellId, const DataArrayInt *nodal, const DataArrayInt *nodalI, const DataArrayInt *revNodal, const DataArrayInt *revNodalI,
1720 DataArrayInt *& commonCellsArr, DataArrayInt *& commonCellsIArr)
1722 MCAuto<DataArrayInt> commonCells=DataArrayInt::New(),commonCellsI=DataArrayInt::New(); commonCells->alloc(0,1);
1723 int nbOfCells=nodalI->getNumberOfTuples()-1;
1724 commonCellsI->reserve(1); commonCellsI->pushBackSilent(0);
1725 const int *revNodalPtr=revNodal->getConstPointer(),*revNodalIPtr=revNodalI->getConstPointer();
1726 const int *connPtr=nodal->getConstPointer(),*connIPtr=nodalI->getConstPointer();
1727 std::vector<bool> isFetched(nbOfCells,false);
1730 for(int i=0;i<nbOfCells;i++)
1734 const int *connOfNode=std::find_if(connPtr+connIPtr[i]+1,connPtr+connIPtr[i+1],std::bind2nd(std::not_equal_to<int>(),-1));
1735 std::vector<int> v,v2;
1736 if(connOfNode!=connPtr+connIPtr[i+1])
1738 const int *locRevNodal=std::find(revNodalPtr+revNodalIPtr[*connOfNode],revNodalPtr+revNodalIPtr[*connOfNode+1],i);
1739 v2.insert(v2.end(),locRevNodal,revNodalPtr+revNodalIPtr[*connOfNode+1]);
1742 for(;connOfNode!=connPtr+connIPtr[i+1] && v2.size()>1;connOfNode++)
1746 const int *locRevNodal=std::find(revNodalPtr+revNodalIPtr[*connOfNode],revNodalPtr+revNodalIPtr[*connOfNode+1],i);
1747 std::vector<int>::iterator it=std::set_intersection(v.begin(),v.end(),locRevNodal,revNodalPtr+revNodalIPtr[*connOfNode+1],v2.begin());
1748 v2.resize(std::distance(v2.begin(),it));
1752 if(AreCellsEqualInPool(v2,compType,connPtr,connIPtr,commonCells))
1754 int pos=commonCellsI->back();
1755 commonCellsI->pushBackSilent(commonCells->getNumberOfTuples());
1756 for(const int *it=commonCells->begin()+pos;it!=commonCells->end();it++)
1757 isFetched[*it]=true;
1765 for(int i=startCellId;i<nbOfCells;i++)
1769 const int *connOfNode=std::find_if(connPtr+connIPtr[i]+1,connPtr+connIPtr[i+1],std::bind2nd(std::not_equal_to<int>(),-1));
1770 std::vector<int> v,v2;
1771 if(connOfNode!=connPtr+connIPtr[i+1])
1773 v2.insert(v2.end(),revNodalPtr+revNodalIPtr[*connOfNode],revNodalPtr+revNodalIPtr[*connOfNode+1]);
1776 for(;connOfNode!=connPtr+connIPtr[i+1] && v2.size()>1;connOfNode++)
1780 std::vector<int>::iterator it=std::set_intersection(v.begin(),v.end(),revNodalPtr+revNodalIPtr[*connOfNode],revNodalPtr+revNodalIPtr[*connOfNode+1],v2.begin());
1781 v2.resize(std::distance(v2.begin(),it));
1785 if(AreCellsEqualInPool(v2,compType,connPtr,connIPtr,commonCells))
1787 int pos=commonCellsI->back();
1788 commonCellsI->pushBackSilent(commonCells->getNumberOfTuples());
1789 for(const int *it=commonCells->begin()+pos;it!=commonCells->end();it++)
1790 isFetched[*it]=true;
1796 commonCellsArr=commonCells.retn();
1797 commonCellsIArr=commonCellsI.retn();
1801 * Checks if \a this mesh includes all cells of an \a other mesh, and returns an array
1802 * giving for each cell of the \a other an id of a cell in \a this mesh. A value larger
1803 * than \a this->getNumberOfCells() in the returned array means that there is no
1804 * corresponding cell in \a this mesh.
1805 * It is expected that \a this and \a other meshes share the same node coordinates
1806 * array, if it is not so an exception is thrown.
1807 * \param [in] other - the mesh to compare with.
1808 * \param [in] compType - specifies a cell comparison technique. For meaning of its
1809 * valid values [0,1,2], see zipConnectivityTraducer().
1810 * \param [out] arr - a new instance of DataArrayInt returning correspondence
1811 * between cells of the two meshes. It contains \a other->getNumberOfCells()
1812 * values. The caller is to delete this array using
1813 * decrRef() as it is no more needed.
1814 * \return bool - \c true if all cells of \a other mesh are present in the \a this
1817 * \if ENABLE_EXAMPLES
1818 * \ref cpp_mcumesh_areCellsIncludedIn "Here is a C++ example".<br>
1819 * \ref py_mcumesh_areCellsIncludedIn "Here is a Python example".
1821 * \sa checkDeepEquivalOnSameNodesWith()
1822 * \sa checkGeoEquivalWith()
1824 bool MEDCouplingUMesh::areCellsIncludedIn(const MEDCouplingUMesh *other, int compType, DataArrayInt *& arr) const
1826 MCAuto<MEDCouplingUMesh> mesh=MergeUMeshesOnSameCoords(this,other);
1827 int nbOfCells=getNumberOfCells();
1828 static const int possibleCompType[]={0,1,2};
1829 if(std::find(possibleCompType,possibleCompType+sizeof(possibleCompType)/sizeof(int),compType)==possibleCompType+sizeof(possibleCompType)/sizeof(int))
1831 std::ostringstream oss; oss << "MEDCouplingUMesh::areCellsIncludedIn : only following policies are possible : ";
1832 std::copy(possibleCompType,possibleCompType+sizeof(possibleCompType)/sizeof(int),std::ostream_iterator<int>(oss," "));
1834 throw INTERP_KERNEL::Exception(oss.str());
1836 MCAuto<DataArrayInt> o2n=mesh->zipConnectivityTraducer(compType,nbOfCells);
1837 arr=o2n->subArray(nbOfCells);
1838 arr->setName(other->getName());
1840 if(other->getNumberOfCells()==0)
1842 return arr->getMaxValue(tmp)<nbOfCells;
1846 * This method makes the assumption that \a this and \a other share the same coords. If not an exception will be thrown !
1847 * This method tries to determine if \b other is fully included in \b this.
1848 * The main difference is that this method is not expected to throw exception.
1849 * This method has two outputs :
1851 * \param other other mesh
1852 * \param arr is an output parameter that returns a \b newly created instance. This array is of size 'other->getNumberOfCells()'.
1853 * \return If \a other is fully included in 'this 'true is returned. If not false is returned.
1855 bool MEDCouplingUMesh::areCellsIncludedInPolicy7(const MEDCouplingUMesh *other, DataArrayInt *& arr) const
1857 MCAuto<MEDCouplingUMesh> mesh=MergeUMeshesOnSameCoords(this,other);
1858 DataArrayInt *commonCells=0,*commonCellsI=0;
1859 int thisNbCells=getNumberOfCells();
1860 mesh->findCommonCells(7,thisNbCells,commonCells,commonCellsI);
1861 MCAuto<DataArrayInt> commonCellsTmp(commonCells),commonCellsITmp(commonCellsI);
1862 const int *commonCellsPtr=commonCells->getConstPointer(),*commonCellsIPtr=commonCellsI->getConstPointer();
1863 int otherNbCells=other->getNumberOfCells();
1864 MCAuto<DataArrayInt> arr2=DataArrayInt::New();
1865 arr2->alloc(otherNbCells,1);
1866 arr2->fillWithZero();
1867 int *arr2Ptr=arr2->getPointer();
1868 int nbOfCommon=commonCellsI->getNumberOfTuples()-1;
1869 for(int i=0;i<nbOfCommon;i++)
1871 int start=commonCellsPtr[commonCellsIPtr[i]];
1872 if(start<thisNbCells)
1874 for(int j=commonCellsIPtr[i]+1;j!=commonCellsIPtr[i+1];j++)
1876 int sig=commonCellsPtr[j]>0?1:-1;
1877 int val=std::abs(commonCellsPtr[j])-1;
1878 if(val>=thisNbCells)
1879 arr2Ptr[val-thisNbCells]=sig*(start+1);
1883 arr2->setName(other->getName());
1884 if(arr2->presenceOfValue(0))
1890 MEDCouplingUMesh *MEDCouplingUMesh::mergeMyselfWithOnSameCoords(const MEDCouplingPointSet *other) const
1893 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::mergeMyselfWithOnSameCoords : input other is null !");
1894 const MEDCouplingUMesh *otherC=dynamic_cast<const MEDCouplingUMesh *>(other);
1896 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::mergeMyselfWithOnSameCoords : the input other mesh is not of type unstructured !");
1897 std::vector<const MEDCouplingUMesh *> ms(2);
1900 return MergeUMeshesOnSameCoords(ms);
1904 * Build a sub part of \b this lying or not on the same coordinates than \b this (regarding value of \b keepCoords).
1905 * By default coordinates are kept. This method is close to MEDCouplingUMesh::buildPartOfMySelf except that here input
1906 * cellIds is not given explicitly but by a range python like.
1911 * \param keepCoords that specifies if you want or not to keep coords as this or zip it (see MEDCoupling::MEDCouplingUMesh::zipCoords). If true zipCoords is \b NOT called, if false, zipCoords is called.
1912 * \return a newly allocated
1914 * \warning This method modifies can generate an unstructured mesh whose cells are not sorted by geometric type order.
1915 * In view of the MED file writing, a renumbering of cells of returned unstructured mesh (using MEDCouplingUMesh::sortCellsInMEDFileFrmt) should be necessary.
1917 MEDCouplingUMesh *MEDCouplingUMesh::buildPartOfMySelfSlice(int start, int end, int step, bool keepCoords) const
1919 if(getMeshDimension()!=-1)
1920 return static_cast<MEDCouplingUMesh *>(MEDCouplingPointSet::buildPartOfMySelfSlice(start,end,step,keepCoords));
1923 int newNbOfCells=DataArray::GetNumberOfItemGivenBESRelative(start,end,step,"MEDCouplingUMesh::buildPartOfMySelfSlice for -1 dimension mesh ");
1925 throw INTERP_KERNEL::Exception("-1D mesh has only one cell !");
1927 throw INTERP_KERNEL::Exception("-1D mesh has only one cell : 0 !");
1929 return const_cast<MEDCouplingUMesh *>(this);
1934 * Creates a new MEDCouplingUMesh containing specified cells of \a this mesh.
1935 * The result mesh shares or not the node coordinates array with \a this mesh depending
1936 * on \a keepCoords parameter.
1937 * \warning Cells of the result mesh can be \b not sorted by geometric type, hence,
1938 * to write this mesh to the MED file, its cells must be sorted using
1939 * sortCellsInMEDFileFrmt().
1940 * \param [in] begin - an array of cell ids to include to the new mesh.
1941 * \param [in] end - a pointer to last-plus-one-th element of \a begin.
1942 * \param [in] keepCoords - if \c true, the result mesh shares the node coordinates
1943 * array of \a this mesh, else "free" nodes are removed from the result mesh
1944 * by calling zipCoords().
1945 * \return MEDCouplingUMesh * - a new instance of MEDCouplingUMesh. The caller is
1946 * to delete this mesh using decrRef() as it is no more needed.
1947 * \throw If the coordinates array is not set.
1948 * \throw If the nodal connectivity of cells is not defined.
1949 * \throw If any cell id in the array \a begin is not valid.
1951 * \if ENABLE_EXAMPLES
1952 * \ref cpp_mcumesh_buildPartOfMySelf "Here is a C++ example".<br>
1953 * \ref py_mcumesh_buildPartOfMySelf "Here is a Python example".
1956 MEDCouplingUMesh *MEDCouplingUMesh::buildPartOfMySelf(const int *begin, const int *end, bool keepCoords) const
1958 if(getMeshDimension()!=-1)
1959 return static_cast<MEDCouplingUMesh *>(MEDCouplingPointSet::buildPartOfMySelf(begin,end,keepCoords));
1963 throw INTERP_KERNEL::Exception("-1D mesh has only one cell !");
1965 throw INTERP_KERNEL::Exception("-1D mesh has only one cell : 0 !");
1967 return const_cast<MEDCouplingUMesh *>(this);
1972 * This method operates only on nodal connectivity on \b this. Coordinates of \b this is completely ignored here.
1974 * This method allows to partially modify some cells in \b this (whose list is specified by [ \b cellIdsBg, \b cellIdsEnd ) ) with cells coming in \b otherOnSameCoordsThanThis.
1975 * Size of [ \b cellIdsBg, \b cellIdsEnd ) ) must be equal to the number of cells of otherOnSameCoordsThanThis.
1976 * The number of cells of \b this will remain the same with this method.
1978 * \param [in] cellIdsBg begin of cell ids (included) of cells in this to assign
1979 * \param [in] cellIdsEnd end of cell ids (excluded) of cells in this to assign
1980 * \param [in] otherOnSameCoordsThanThis an another mesh with same meshdimension than \b this with exactly the same number of cells than cell ids list in [\b cellIdsBg, \b cellIdsEnd ).
1981 * Coordinate pointer of \b this and those of \b otherOnSameCoordsThanThis must be the same
1983 void MEDCouplingUMesh::setPartOfMySelf(const int *cellIdsBg, const int *cellIdsEnd, const MEDCouplingUMesh& otherOnSameCoordsThanThis)
1985 checkConnectivityFullyDefined();
1986 otherOnSameCoordsThanThis.checkConnectivityFullyDefined();
1987 if(getCoords()!=otherOnSameCoordsThanThis.getCoords())
1988 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::setPartOfMySelf : coordinates pointer are not the same ! Invoke setCoords or call tryToShareSameCoords method !");
1989 if(getMeshDimension()!=otherOnSameCoordsThanThis.getMeshDimension())
1991 std::ostringstream oss; oss << "MEDCouplingUMesh::setPartOfMySelf : Mismatch of meshdimensions ! this is equal to " << getMeshDimension();
1992 oss << ", whereas other mesh dimension is set equal to " << otherOnSameCoordsThanThis.getMeshDimension() << " !";
1993 throw INTERP_KERNEL::Exception(oss.str());
1995 std::size_t nbOfCellsToModify(std::distance(cellIdsBg,cellIdsEnd));
1996 if(nbOfCellsToModify!=otherOnSameCoordsThanThis.getNumberOfCells())
1998 std::ostringstream oss; oss << "MEDCouplingUMesh::setPartOfMySelf : cells ids length (" << nbOfCellsToModify << ") do not match the number of cells of other mesh (" << otherOnSameCoordsThanThis.getNumberOfCells() << ") !";
1999 throw INTERP_KERNEL::Exception(oss.str());
2001 std::size_t nbOfCells(getNumberOfCells());
2002 bool easyAssign(true);
2003 const int *connI(_nodal_connec_index->begin());
2004 const int *connIOther=otherOnSameCoordsThanThis._nodal_connec_index->begin();
2005 for(const int *it=cellIdsBg;it!=cellIdsEnd && easyAssign;it++,connIOther++)
2007 if(*it>=0 && *it<(int)nbOfCells)
2009 easyAssign=(connIOther[1]-connIOther[0])==(connI[*it+1]-connI[*it]);
2013 std::ostringstream oss; oss << "MEDCouplingUMesh::setPartOfMySelf : On pos #" << std::distance(cellIdsBg,it) << " id is equal to " << *it << " which is not in [0," << nbOfCells << ") !";
2014 throw INTERP_KERNEL::Exception(oss.str());
2019 MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx(cellIdsBg,cellIdsEnd,_nodal_connec,_nodal_connec_index,otherOnSameCoordsThanThis._nodal_connec,otherOnSameCoordsThanThis._nodal_connec_index);
2024 DataArrayInt *arrOut=0,*arrIOut=0;
2025 MEDCouplingUMesh::SetPartOfIndexedArrays(cellIdsBg,cellIdsEnd,_nodal_connec,_nodal_connec_index,otherOnSameCoordsThanThis._nodal_connec,otherOnSameCoordsThanThis._nodal_connec_index,
2027 MCAuto<DataArrayInt> arrOutAuto(arrOut),arrIOutAuto(arrIOut);
2028 setConnectivity(arrOut,arrIOut,true);
2032 void MEDCouplingUMesh::setPartOfMySelfSlice(int start, int end, int step, const MEDCouplingUMesh& otherOnSameCoordsThanThis)
2034 checkConnectivityFullyDefined();
2035 otherOnSameCoordsThanThis.checkConnectivityFullyDefined();
2036 if(getCoords()!=otherOnSameCoordsThanThis.getCoords())
2037 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::setPartOfMySelfSlice : coordinates pointer are not the same ! Invoke setCoords or call tryToShareSameCoords method !");
2038 if(getMeshDimension()!=otherOnSameCoordsThanThis.getMeshDimension())
2040 std::ostringstream oss; oss << "MEDCouplingUMesh::setPartOfMySelfSlice : Mismatch of meshdimensions ! this is equal to " << getMeshDimension();
2041 oss << ", whereas other mesh dimension is set equal to " << otherOnSameCoordsThanThis.getMeshDimension() << " !";
2042 throw INTERP_KERNEL::Exception(oss.str());
2044 int nbOfCellsToModify=DataArray::GetNumberOfItemGivenBESRelative(start,end,step,"MEDCouplingUMesh::setPartOfMySelfSlice : ");
2045 if(nbOfCellsToModify!=(int)otherOnSameCoordsThanThis.getNumberOfCells())
2047 std::ostringstream oss; oss << "MEDCouplingUMesh::setPartOfMySelfSlice : cells ids length (" << nbOfCellsToModify << ") do not match the number of cells of other mesh (" << otherOnSameCoordsThanThis.getNumberOfCells() << ") !";
2048 throw INTERP_KERNEL::Exception(oss.str());
2050 int nbOfCells=getNumberOfCells();
2051 bool easyAssign=true;
2052 const int *connI=_nodal_connec_index->getConstPointer();
2053 const int *connIOther=otherOnSameCoordsThanThis._nodal_connec_index->getConstPointer();
2055 for(int i=0;i<nbOfCellsToModify && easyAssign;i++,it+=step,connIOther++)
2057 if(it>=0 && it<nbOfCells)
2059 easyAssign=(connIOther[1]-connIOther[0])==(connI[it+1]-connI[it]);
2063 std::ostringstream oss; oss << "MEDCouplingUMesh::setPartOfMySelfSlice : On pos #" << i << " id is equal to " << it << " which is not in [0," << nbOfCells << ") !";
2064 throw INTERP_KERNEL::Exception(oss.str());
2069 MEDCouplingUMesh::SetPartOfIndexedArraysSameIdxSlice(start,end,step,_nodal_connec,_nodal_connec_index,otherOnSameCoordsThanThis._nodal_connec,otherOnSameCoordsThanThis._nodal_connec_index);
2074 DataArrayInt *arrOut=0,*arrIOut=0;
2075 MEDCouplingUMesh::SetPartOfIndexedArraysSlice(start,end,step,_nodal_connec,_nodal_connec_index,otherOnSameCoordsThanThis._nodal_connec,otherOnSameCoordsThanThis._nodal_connec_index,
2077 MCAuto<DataArrayInt> arrOutAuto(arrOut),arrIOutAuto(arrIOut);
2078 setConnectivity(arrOut,arrIOut,true);
2084 * Creates a new MEDCouplingUMesh containing cells, of dimension one less than \a
2085 * this->getMeshDimension(), that bound some cells of \a this mesh.
2086 * The cells of lower dimension to include to the result mesh are selected basing on
2087 * specified node ids and the value of \a fullyIn parameter. If \a fullyIn ==\c true, a
2088 * cell is copied if its all nodes are in the array \a begin of node ids. If \a fullyIn
2089 * ==\c false, a cell is copied if any its node is in the array of node ids. The
2090 * created mesh shares the node coordinates array with \a this mesh.
2091 * \param [in] begin - the array of node ids.
2092 * \param [in] end - a pointer to the (last+1)-th element of \a begin.
2093 * \param [in] fullyIn - if \c true, then cells whose all nodes are in the
2094 * array \a begin are added, else cells whose any node is in the
2095 * array \a begin are added.
2096 * \return MEDCouplingUMesh * - new instance of MEDCouplingUMesh. The caller is
2097 * to delete this mesh using decrRef() as it is no more needed.
2098 * \throw If the coordinates array is not set.
2099 * \throw If the nodal connectivity of cells is not defined.
2100 * \throw If any node id in \a begin is not valid.
2102 * \if ENABLE_EXAMPLES
2103 * \ref cpp_mcumesh_buildFacePartOfMySelfNode "Here is a C++ example".<br>
2104 * \ref py_mcumesh_buildFacePartOfMySelfNode "Here is a Python example".
2107 MEDCouplingUMesh *MEDCouplingUMesh::buildFacePartOfMySelfNode(const int *begin, const int *end, bool fullyIn) const
2109 MCAuto<DataArrayInt> desc,descIndx,revDesc,revDescIndx;
2110 desc=DataArrayInt::New(); descIndx=DataArrayInt::New(); revDesc=DataArrayInt::New(); revDescIndx=DataArrayInt::New();
2111 MCAuto<MEDCouplingUMesh> subMesh=buildDescendingConnectivity(desc,descIndx,revDesc,revDescIndx);
2112 desc=0; descIndx=0; revDesc=0; revDescIndx=0;
2113 return static_cast<MEDCouplingUMesh*>(subMesh->buildPartOfMySelfNode(begin,end,fullyIn));
2117 * Creates a new MEDCouplingUMesh containing cells, of dimension one less than \a
2118 * this->getMeshDimension(), which bound only one cell of \a this mesh.
2119 * \param [in] keepCoords - if \c true, the result mesh shares the node coordinates
2120 * array of \a this mesh, else "free" nodes are removed from the result mesh
2121 * by calling zipCoords().
2122 * \return MEDCouplingUMesh * - a new instance of MEDCouplingUMesh. The caller is
2123 * to delete this mesh using decrRef() as it is no more needed.
2124 * \throw If the coordinates array is not set.
2125 * \throw If the nodal connectivity of cells is not defined.
2127 * \if ENABLE_EXAMPLES
2128 * \ref cpp_mcumesh_buildBoundaryMesh "Here is a C++ example".<br>
2129 * \ref py_mcumesh_buildBoundaryMesh "Here is a Python example".
2132 MEDCouplingUMesh *MEDCouplingUMesh::buildBoundaryMesh(bool keepCoords) const
2134 DataArrayInt *desc=DataArrayInt::New();
2135 DataArrayInt *descIndx=DataArrayInt::New();
2136 DataArrayInt *revDesc=DataArrayInt::New();
2137 DataArrayInt *revDescIndx=DataArrayInt::New();
2139 MCAuto<MEDCouplingUMesh> meshDM1=buildDescendingConnectivity(desc,descIndx,revDesc,revDescIndx);
2142 descIndx->decrRef();
2143 int nbOfCells=meshDM1->getNumberOfCells();
2144 const int *revDescIndxC=revDescIndx->getConstPointer();
2145 std::vector<int> boundaryCells;
2146 for(int i=0;i<nbOfCells;i++)
2147 if(revDescIndxC[i+1]-revDescIndxC[i]==1)
2148 boundaryCells.push_back(i);
2149 revDescIndx->decrRef();
2150 MEDCouplingUMesh *ret=meshDM1->buildPartOfMySelf(&boundaryCells[0],&boundaryCells[0]+boundaryCells.size(),keepCoords);
2155 * This method returns a newly created DataArrayInt instance containing ids of cells located in boundary.
2156 * A cell is detected to be on boundary if it contains one or more than one face having only one father.
2157 * This method makes the assumption that \a this is fully defined (coords,connectivity). If not an exception will be thrown.
2159 DataArrayInt *MEDCouplingUMesh::findCellIdsOnBoundary() const
2161 checkFullyDefined();
2162 MCAuto<DataArrayInt> desc=DataArrayInt::New();
2163 MCAuto<DataArrayInt> descIndx=DataArrayInt::New();
2164 MCAuto<DataArrayInt> revDesc=DataArrayInt::New();
2165 MCAuto<DataArrayInt> revDescIndx=DataArrayInt::New();
2167 buildDescendingConnectivity(desc,descIndx,revDesc,revDescIndx)->decrRef();
2168 desc=(DataArrayInt*)0; descIndx=(DataArrayInt*)0;
2170 MCAuto<DataArrayInt> tmp=revDescIndx->deltaShiftIndex();
2171 MCAuto<DataArrayInt> faceIds=tmp->findIdsEqual(1); tmp=(DataArrayInt*)0;
2172 const int *revDescPtr=revDesc->getConstPointer();
2173 const int *revDescIndxPtr=revDescIndx->getConstPointer();
2174 int nbOfCells=getNumberOfCells();
2175 std::vector<bool> ret1(nbOfCells,false);
2177 for(const int *pt=faceIds->begin();pt!=faceIds->end();pt++)
2178 if(!ret1[revDescPtr[revDescIndxPtr[*pt]]])
2179 { ret1[revDescPtr[revDescIndxPtr[*pt]]]=true; sz++; }
2181 DataArrayInt *ret2=DataArrayInt::New();
2183 int *ret2Ptr=ret2->getPointer();
2185 for(std::vector<bool>::const_iterator it=ret1.begin();it!=ret1.end();it++,sz++)
2188 ret2->setName("BoundaryCells");
2193 * This method finds in \b this the cell ids that lie on mesh \b otherDimM1OnSameCoords.
2194 * \b this and \b otherDimM1OnSameCoords have to lie on the same coordinate array pointer. The coherency of that coords array with connectivity
2195 * of \b this and \b otherDimM1OnSameCoords is not important here because this method works only on connectivity.
2196 * this->getMeshDimension() - 1 must be equal to otherDimM1OnSameCoords.getMeshDimension()
2198 * s0 is the cell ids set in \b this lying on at least one node in the fetched nodes in \b otherDimM1OnSameCoords.
2199 * This method also returns the cells ids set s1 which contains the cell ids in \b this for which one of the dim-1 constituent
2200 * equals a cell in \b otherDimM1OnSameCoords.
2202 * \throw if \b otherDimM1OnSameCoords is not part of constituent of \b this, or if coordinate pointer of \b this and \b otherDimM1OnSameCoords
2203 * are not same, or if this->getMeshDimension()-1!=otherDimM1OnSameCoords.getMeshDimension()
2205 * \param [in] otherDimM1OnSameCoords
2206 * \param [out] cellIdsRk0 a newly allocated array containing the cell ids of s0 (which are cell ids of \b this) in the above algorithm.
2207 * \param [out] cellIdsRk1 a newly allocated array containing the cell ids of s1 \b indexed into the \b cellIdsRk0 subset. To get the absolute ids of s1, simply invoke
2208 * cellIdsRk1->transformWithIndArr(cellIdsRk0->begin(),cellIdsRk0->end());
2210 void MEDCouplingUMesh::findCellIdsLyingOn(const MEDCouplingUMesh& otherDimM1OnSameCoords, DataArrayInt *&cellIdsRk0, DataArrayInt *&cellIdsRk1) const
2212 if(getCoords()!=otherDimM1OnSameCoords.getCoords())
2213 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::findCellIdsLyingOn : coordinates pointer are not the same ! Use tryToShareSameCoords method !");
2214 checkConnectivityFullyDefined();
2215 otherDimM1OnSameCoords.checkConnectivityFullyDefined();
2216 if(getMeshDimension()-1!=otherDimM1OnSameCoords.getMeshDimension())
2217 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::findCellIdsLyingOn : invalid mesh dimension of input mesh regarding meshdimesion of this !");
2218 MCAuto<DataArrayInt> fetchedNodeIds1=otherDimM1OnSameCoords.computeFetchedNodeIds();
2219 MCAuto<DataArrayInt> s0arr=getCellIdsLyingOnNodes(fetchedNodeIds1->begin(),fetchedNodeIds1->end(),false);
2220 MCAuto<MEDCouplingUMesh> thisPart=static_cast<MEDCouplingUMesh *>(buildPartOfMySelf(s0arr->begin(),s0arr->end(),true));
2221 MCAuto<DataArrayInt> descThisPart=DataArrayInt::New(),descIThisPart=DataArrayInt::New(),revDescThisPart=DataArrayInt::New(),revDescIThisPart=DataArrayInt::New();
2222 MCAuto<MEDCouplingUMesh> thisPartConsti=thisPart->buildDescendingConnectivity(descThisPart,descIThisPart,revDescThisPart,revDescIThisPart);
2223 const int *revDescThisPartPtr=revDescThisPart->getConstPointer(),*revDescIThisPartPtr=revDescIThisPart->getConstPointer();
2224 DataArrayInt *idsOtherInConsti=0;
2225 bool b=thisPartConsti->areCellsIncludedIn(&otherDimM1OnSameCoords,2,idsOtherInConsti);
2226 MCAuto<DataArrayInt> idsOtherInConstiAuto(idsOtherInConsti);
2228 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::findCellIdsLyingOn : the given mdim-1 mesh in other is not a constituent of this !");
2230 for(const int *idOther=idsOtherInConsti->begin();idOther!=idsOtherInConsti->end();idOther++)
2231 s1.insert(revDescThisPartPtr+revDescIThisPartPtr[*idOther],revDescThisPartPtr+revDescIThisPartPtr[*idOther+1]);
2232 MCAuto<DataArrayInt> s1arr_renum1=DataArrayInt::New(); s1arr_renum1->alloc((int)s1.size(),1); std::copy(s1.begin(),s1.end(),s1arr_renum1->getPointer());
2233 s1arr_renum1->sort();
2234 cellIdsRk0=s0arr.retn();
2235 //cellIdsRk1=s_renum1.retn();
2236 cellIdsRk1=s1arr_renum1.retn();
2240 * This method computes the skin of \b this. That is to say the consituting meshdim-1 mesh is built and only the boundary subpart is
2241 * returned. This subpart of meshdim-1 mesh is built using meshdim-1 cells in it shared only one cell in \b this.
2243 * \return a newly allocated mesh lying on the same coordinates than \b this. The caller has to deal with returned mesh.
2245 MEDCouplingUMesh *MEDCouplingUMesh::computeSkin() const
2247 MCAuto<DataArrayInt> desc=DataArrayInt::New();
2248 MCAuto<DataArrayInt> descIndx=DataArrayInt::New();
2249 MCAuto<DataArrayInt> revDesc=DataArrayInt::New();
2250 MCAuto<DataArrayInt> revDescIndx=DataArrayInt::New();
2252 MCAuto<MEDCouplingUMesh> meshDM1=buildDescendingConnectivity(desc,descIndx,revDesc,revDescIndx);
2253 revDesc=0; desc=0; descIndx=0;
2254 MCAuto<DataArrayInt> revDescIndx2=revDescIndx->deltaShiftIndex();
2255 MCAuto<DataArrayInt> part=revDescIndx2->findIdsEqual(1);
2256 return static_cast<MEDCouplingUMesh *>(meshDM1->buildPartOfMySelf(part->begin(),part->end(),true));
2260 * Finds nodes lying on the boundary of \a this mesh.
2261 * \return DataArrayInt * - a new instance of DataArrayInt holding ids of found
2262 * nodes. The caller is to delete this array using decrRef() as it is no
2264 * \throw If the coordinates array is not set.
2265 * \throw If the nodal connectivity of cells is node defined.
2267 * \if ENABLE_EXAMPLES
2268 * \ref cpp_mcumesh_findBoundaryNodes "Here is a C++ example".<br>
2269 * \ref py_mcumesh_findBoundaryNodes "Here is a Python example".
2272 DataArrayInt *MEDCouplingUMesh::findBoundaryNodes() const
2274 MCAuto<MEDCouplingUMesh> skin=computeSkin();
2275 return skin->computeFetchedNodeIds();
2278 MEDCouplingUMesh *MEDCouplingUMesh::buildUnstructured() const
2281 return const_cast<MEDCouplingUMesh *>(this);
2285 * This method expects that \b this and \b otherDimM1OnSameCoords share the same coordinates array.
2286 * otherDimM1OnSameCoords->getMeshDimension() is expected to be equal to this->getMeshDimension()-1.
2287 * This method searches for nodes needed to be duplicated. These nodes are nodes fetched by \b otherDimM1OnSameCoords which are not part of the boundary of \b otherDimM1OnSameCoords.
2288 * If a node is in the boundary of \b this \b and in the boundary of \b otherDimM1OnSameCoords this node is considered as needed to be duplicated.
2289 * When the set of node ids \b nodeIdsToDuplicate is computed, cell ids in \b this is searched so that their connectivity includes at least 1 node in \b nodeIdsToDuplicate.
2291 * \param [in] otherDimM1OnSameCoords a mesh lying on the same coords than \b this and with a mesh dimension equal to those of \b this minus 1. WARNING this input
2292 * parameter is altered during the call.
2293 * \param [out] nodeIdsToDuplicate node ids needed to be duplicated following the algorithm explain above.
2294 * \param [out] cellIdsNeededToBeRenum cell ids in \b this in which the renumber of nodes should be performed.
2295 * \param [out] cellIdsNotModified cell ids int \b this that lies on \b otherDimM1OnSameCoords mesh whose connectivity do \b not need to be modified as it is the case for \b cellIdsNeededToBeRenum.
2297 * \warning This method modifies param \b otherDimM1OnSameCoords (for speed reasons).
2299 void MEDCouplingUMesh::findNodesToDuplicate(const MEDCouplingUMesh& otherDimM1OnSameCoords, DataArrayInt *& nodeIdsToDuplicate,
2300 DataArrayInt *& cellIdsNeededToBeRenum, DataArrayInt *& cellIdsNotModified) const
2302 typedef MCAuto<DataArrayInt> DAInt;
2303 typedef MCAuto<MEDCouplingUMesh> MCUMesh;
2305 checkFullyDefined();
2306 otherDimM1OnSameCoords.checkFullyDefined();
2307 if(getCoords()!=otherDimM1OnSameCoords.getCoords())
2308 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::findNodesToDuplicate : meshes do not share the same coords array !");
2309 if(otherDimM1OnSameCoords.getMeshDimension()!=getMeshDimension()-1)
2310 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::findNodesToDuplicate : the mesh given in other parameter must have this->getMeshDimension()-1 !");
2312 // Checking star-shaped M1 group:
2313 DAInt dt0=DataArrayInt::New(),dit0=DataArrayInt::New(),rdt0=DataArrayInt::New(),rdit0=DataArrayInt::New();
2314 MCUMesh meshM2 = otherDimM1OnSameCoords.buildDescendingConnectivity(dt0, dit0, rdt0, rdit0);
2315 DAInt dsi = rdit0->deltaShiftIndex();
2316 DAInt idsTmp0 = dsi->findIdsNotInRange(-1, 3);
2317 if(idsTmp0->getNumberOfTuples())
2318 throw INTERP_KERNEL::Exception("MEDFileUMesh::buildInnerBoundaryAlongM1Group: group is too complex: some points (or edges) have more than two connected segments (or faces)!");
2319 dt0=0; dit0=0; rdt0=0; rdit0=0; idsTmp0=0;
2321 // Get extreme nodes from the group (they won't be duplicated), ie nodes belonging to boundary cells of M1
2322 DAInt xtremIdsM2 = dsi->findIdsEqual(1); dsi = 0;
2323 MCUMesh meshM2Part = static_cast<MEDCouplingUMesh *>(meshM2->buildPartOfMySelf(xtremIdsM2->begin(), xtremIdsM2->end(),true));
2324 DAInt xtrem = meshM2Part->computeFetchedNodeIds();
2325 // Remove from the list points on the boundary of the M0 mesh (those need duplication!)
2326 dt0=DataArrayInt::New(),dit0=DataArrayInt::New(),rdt0=DataArrayInt::New(),rdit0=DataArrayInt::New();
2327 MCUMesh m0desc = buildDescendingConnectivity(dt0, dit0, rdt0, rdit0); dt0=0; dit0=0; rdt0=0;
2328 dsi = rdit0->deltaShiftIndex();
2329 DAInt boundSegs = dsi->findIdsEqual(1); // boundary segs/faces of the M0 mesh
2330 MCUMesh m0descSkin = static_cast<MEDCouplingUMesh *>(m0desc->buildPartOfMySelf(boundSegs->begin(),boundSegs->end(), true));
2331 DAInt fNodes = m0descSkin->computeFetchedNodeIds();
2332 // In 3D, some points on the boundary of M0 still need duplication:
2334 if (getMeshDimension() == 3)
2336 DAInt dnu1=DataArrayInt::New(), dnu2=DataArrayInt::New(), dnu3=DataArrayInt::New(), dnu4=DataArrayInt::New();
2337 MCUMesh m0descSkinDesc = m0descSkin->buildDescendingConnectivity(dnu1, dnu2, dnu3, dnu4);
2338 dnu1=0;dnu2=0;dnu3=0;dnu4=0;
2339 DataArrayInt * corresp=0;
2340 meshM2->areCellsIncludedIn(m0descSkinDesc,2,corresp);
2341 DAInt validIds = corresp->findIdsInRange(0, meshM2->getNumberOfCells());
2343 if (validIds->getNumberOfTuples())
2345 MCUMesh m1IntersecSkin = static_cast<MEDCouplingUMesh *>(m0descSkinDesc->buildPartOfMySelf(validIds->begin(), validIds->end(), true));
2346 DAInt notDuplSkin = m1IntersecSkin->findBoundaryNodes();
2347 DAInt fNodes1 = fNodes->buildSubstraction(notDuplSkin);
2348 notDup = xtrem->buildSubstraction(fNodes1);
2351 notDup = xtrem->buildSubstraction(fNodes);
2354 notDup = xtrem->buildSubstraction(fNodes);
2356 // Now compute cells around group (i.e. cells where we will do the propagation to identify the two sub-sets delimited by the group)
2357 DAInt m1Nodes = otherDimM1OnSameCoords.computeFetchedNodeIds();
2358 DAInt dupl = m1Nodes->buildSubstraction(notDup);
2359 DAInt cellsAroundGroup = getCellIdsLyingOnNodes(dupl->begin(), dupl->end(), false); // false= take cell in, even if not all nodes are in notDup
2362 MCUMesh m0Part2=static_cast<MEDCouplingUMesh *>(buildPartOfMySelf(cellsAroundGroup->begin(),cellsAroundGroup->end(),true));
2363 int nCells2 = m0Part2->getNumberOfCells();
2364 DAInt desc00=DataArrayInt::New(),descI00=DataArrayInt::New(),revDesc00=DataArrayInt::New(),revDescI00=DataArrayInt::New();
2365 MCUMesh m01=m0Part2->buildDescendingConnectivity(desc00,descI00,revDesc00,revDescI00);
2367 // Neighbor information of the mesh without considering the crack (serves to count how many connex pieces it is made of)
2368 DataArrayInt *tmp00=0,*tmp11=0;
2369 MEDCouplingUMesh::ComputeNeighborsOfCellsAdv(desc00,descI00,revDesc00,revDescI00, tmp00, tmp11);
2370 DAInt neighInit00(tmp00);
2371 DAInt neighIInit00(tmp11);
2372 // Neighbor information of the mesh WITH the crack (some neighbors are removed):
2373 DataArrayInt *idsTmp=0;
2374 m01->areCellsIncludedIn(&otherDimM1OnSameCoords,2,idsTmp);
2376 // In the neighbor information remove the connection between high dimension cells and its low level constituents which are part
2377 // of the frontier given in parameter (i.e. the cells of low dimension from the group delimiting the crack):
2378 MEDCouplingUMesh::RemoveIdsFromIndexedArrays(ids->begin(),ids->end(),desc00,descI00);
2379 DataArrayInt *tmp0=0,*tmp1=0;
2380 // Compute the neighbor of each cell in m0Part2, taking into account the broken link above. Two
2381 // cells on either side of the crack (defined by the mesh of low dimension) are not neighbor anymore.
2382 ComputeNeighborsOfCellsAdv(desc00,descI00,revDesc00,revDescI00,tmp0,tmp1);
2383 DAInt neigh00(tmp0);
2384 DAInt neighI00(tmp1);
2386 // For each initial connex part of the sub-mesh (or said differently for each independent crack):
2387 int seed = 0, nIter = 0;
2388 int nIterMax = nCells2+1; // Safety net for the loop
2389 DAInt hitCells = DataArrayInt::New(); hitCells->alloc(nCells2);
2390 hitCells->fillWithValue(-1);
2391 DAInt cellsToModifyConn0_torenum = DataArrayInt::New();
2392 cellsToModifyConn0_torenum->alloc(0,1);
2393 while (nIter < nIterMax)
2395 DAInt t = hitCells->findIdsEqual(-1);
2396 if (!t->getNumberOfTuples())
2398 // Connex zone without the crack (to compute the next seed really)
2400 DAInt connexCheck = MEDCouplingUMesh::ComputeSpreadZoneGraduallyFromSeed(&seed, &seed+1, neighInit00,neighIInit00, -1, dnu);
2402 for (int * ptr = connexCheck->getPointer(); cnt < connexCheck->getNumberOfTuples(); ptr++, cnt++)
2403 hitCells->setIJ(*ptr,0,1);
2404 // Connex zone WITH the crack (to identify cells lying on either part of the crack)
2405 DAInt spreadZone = MEDCouplingUMesh::ComputeSpreadZoneGraduallyFromSeed(&seed, &seed+1, neigh00,neighI00, -1, dnu);
2406 cellsToModifyConn0_torenum = DataArrayInt::Aggregate(cellsToModifyConn0_torenum, spreadZone, 0);
2407 // Compute next seed, i.e. a cell in another connex part, which was not covered by the previous iterations
2408 DAInt comple = cellsToModifyConn0_torenum->buildComplement(nCells2);
2409 DAInt nonHitCells = hitCells->findIdsEqual(-1);
2410 DAInt intersec = nonHitCells->buildIntersection(comple);
2411 if (intersec->getNumberOfTuples())
2412 { seed = intersec->getIJ(0,0); }
2417 if (nIter >= nIterMax)
2418 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::findNodesToDuplicate(): internal error - too many iterations.");
2420 DAInt cellsToModifyConn1_torenum=cellsToModifyConn0_torenum->buildComplement(neighI00->getNumberOfTuples()-1);
2421 cellsToModifyConn0_torenum->transformWithIndArr(cellsAroundGroup->begin(),cellsAroundGroup->end());
2422 cellsToModifyConn1_torenum->transformWithIndArr(cellsAroundGroup->begin(),cellsAroundGroup->end());
2424 cellIdsNeededToBeRenum=cellsToModifyConn0_torenum.retn();
2425 cellIdsNotModified=cellsToModifyConn1_torenum.retn();
2426 nodeIdsToDuplicate=dupl.retn();
2430 * This method operates a modification of the connectivity and coords in \b this.
2431 * Every time that a node id in [ \b nodeIdsToDuplicateBg, \b nodeIdsToDuplicateEnd ) will append in nodal connectivity of \b this
2432 * its ids will be modified to id this->getNumberOfNodes()+std::distance(nodeIdsToDuplicateBg,std::find(nodeIdsToDuplicateBg,nodeIdsToDuplicateEnd,id)).
2433 * More explicitly the renumber array in nodes is not explicitly given in old2new to avoid to build a big array of renumbering whereas typically few node ids needs to be
2434 * renumbered. The node id nodeIdsToDuplicateBg[0] will have id this->getNumberOfNodes()+0, node id nodeIdsToDuplicateBg[1] will have id this->getNumberOfNodes()+1,
2435 * node id nodeIdsToDuplicateBg[2] will have id this->getNumberOfNodes()+2...
2437 * As a consequence nodal connectivity array length will remain unchanged by this method, and nodal connectivity index array will remain unchanged by this method.
2439 * \param [in] nodeIdsToDuplicateBg begin of node ids (included) to be duplicated in connectivity only
2440 * \param [in] nodeIdsToDuplicateEnd end of node ids (excluded) to be duplicated in connectivity only
2442 void MEDCouplingUMesh::duplicateNodes(const int *nodeIdsToDuplicateBg, const int *nodeIdsToDuplicateEnd)
2444 int nbOfNodes=getNumberOfNodes();
2445 duplicateNodesInCoords(nodeIdsToDuplicateBg,nodeIdsToDuplicateEnd);
2446 duplicateNodesInConn(nodeIdsToDuplicateBg,nodeIdsToDuplicateEnd,nbOfNodes);
2450 * This method renumbers only nodal connectivity in \a this. The renumbering is only an offset applied. So this method is a specialization of
2451 * \a renumberNodesInConn. \b WARNING, this method does not check that the resulting node ids in the nodal connectivity is in a valid range !
2453 * \param [in] offset - specifies the offset to be applied on each element of connectivity.
2455 * \sa renumberNodesInConn
2457 void MEDCouplingUMesh::renumberNodesWithOffsetInConn(int offset)
2459 checkConnectivityFullyDefined();
2460 int *conn(getNodalConnectivity()->getPointer());
2461 const int *connIndex(getNodalConnectivityIndex()->getConstPointer());
2462 int nbOfCells(getNumberOfCells());
2463 for(int i=0;i<nbOfCells;i++)
2464 for(int iconn=connIndex[i]+1;iconn!=connIndex[i+1];iconn++)
2466 int& node=conn[iconn];
2467 if(node>=0)//avoid polyhedron separator
2472 _nodal_connec->declareAsNew();
2477 * Same than renumberNodesInConn(const int *) except that here the format of old-to-new traducer is using map instead
2478 * of array. This method is dedicated for renumbering from a big set of nodes the a tiny set of nodes which is the case during extraction
2481 void MEDCouplingUMesh::renumberNodesInConn(const INTERP_KERNEL::HashMap<int,int>& newNodeNumbersO2N)
2483 this->renumberNodesInConnT< INTERP_KERNEL::HashMap<int,int> >(newNodeNumbersO2N);
2487 * Same than renumberNodesInConn(const int *) except that here the format of old-to-new traducer is using map instead
2488 * of array. This method is dedicated for renumbering from a big set of nodes the a tiny set of nodes which is the case during extraction
2491 void MEDCouplingUMesh::renumberNodesInConn(const std::map<int,int>& newNodeNumbersO2N)
2493 this->renumberNodesInConnT< std::map<int,int> >(newNodeNumbersO2N);
2497 * Changes ids of nodes within the nodal connectivity arrays according to a permutation
2498 * array in "Old to New" mode. The node coordinates array is \b not changed by this method.
2499 * This method is a generalization of shiftNodeNumbersInConn().
2500 * \warning This method performs no check of validity of new ids. **Use it with care !**
2501 * \param [in] newNodeNumbersO2N - a permutation array, of length \a
2502 * this->getNumberOfNodes(), in "Old to New" mode.
2503 * See \ref numbering for more info on renumbering modes.
2504 * \throw If the nodal connectivity of cells is not defined.
2506 * \if ENABLE_EXAMPLES
2507 * \ref cpp_mcumesh_renumberNodesInConn "Here is a C++ example".<br>
2508 * \ref py_mcumesh_renumberNodesInConn "Here is a Python example".
2511 void MEDCouplingUMesh::renumberNodesInConn(const int *newNodeNumbersO2N)
2513 checkConnectivityFullyDefined();
2514 int *conn=getNodalConnectivity()->getPointer();
2515 const int *connIndex=getNodalConnectivityIndex()->getConstPointer();
2516 int nbOfCells(getNumberOfCells());
2517 for(int i=0;i<nbOfCells;i++)
2518 for(int iconn=connIndex[i]+1;iconn!=connIndex[i+1];iconn++)
2520 int& node=conn[iconn];
2521 if(node>=0)//avoid polyhedron separator
2523 node=newNodeNumbersO2N[node];
2526 _nodal_connec->declareAsNew();
2531 * This method renumbers nodes \b in \b connectivity \b only \b without \b any \b reference \b to \b coords.
2532 * This method performs no check on the fact that new coordinate ids are valid. \b Use \b it \b with \b care !
2533 * This method is an specialization of \ref MEDCoupling::MEDCouplingUMesh::renumberNodesInConn "renumberNodesInConn method".
2535 * \param [in] delta specifies the shift size applied to nodeId in nodal connectivity in \b this.
2537 void MEDCouplingUMesh::shiftNodeNumbersInConn(int delta)
2539 checkConnectivityFullyDefined();
2540 int *conn=getNodalConnectivity()->getPointer();
2541 const int *connIndex=getNodalConnectivityIndex()->getConstPointer();
2542 int nbOfCells=getNumberOfCells();
2543 for(int i=0;i<nbOfCells;i++)
2544 for(int iconn=connIndex[i]+1;iconn!=connIndex[i+1];iconn++)
2546 int& node=conn[iconn];
2547 if(node>=0)//avoid polyhedron separator
2552 _nodal_connec->declareAsNew();
2557 * This method operates a modification of the connectivity in \b this.
2558 * Coordinates are \b NOT considered here and will remain unchanged by this method. this->_coords can ever been null for the needs of this method.
2559 * Every time that a node id in [ \b nodeIdsToDuplicateBg, \b nodeIdsToDuplicateEnd ) will append in nodal connectivity of \b this
2560 * its ids will be modified to id offset+std::distance(nodeIdsToDuplicateBg,std::find(nodeIdsToDuplicateBg,nodeIdsToDuplicateEnd,id)).
2561 * More explicitly the renumber array in nodes is not explicitly given in old2new to avoid to build a big array of renumbering whereas typically few node ids needs to be
2562 * renumbered. The node id nodeIdsToDuplicateBg[0] will have id offset+0, node id nodeIdsToDuplicateBg[1] will have id offset+1,
2563 * node id nodeIdsToDuplicateBg[2] will have id offset+2...
2565 * As a consequence nodal connectivity array length will remain unchanged by this method, and nodal connectivity index array will remain unchanged by this method.
2566 * As an another consequense after the call of this method \b this can be transiently non cohrent.
2568 * \param [in] nodeIdsToDuplicateBg begin of node ids (included) to be duplicated in connectivity only
2569 * \param [in] nodeIdsToDuplicateEnd end of node ids (excluded) to be duplicated in connectivity only
2570 * \param [in] offset the offset applied to all node ids in connectivity that are in [ \a nodeIdsToDuplicateBg, \a nodeIdsToDuplicateEnd ).
2572 void MEDCouplingUMesh::duplicateNodesInConn(const int *nodeIdsToDuplicateBg, const int *nodeIdsToDuplicateEnd, int offset)
2574 checkConnectivityFullyDefined();
2575 std::map<int,int> m;
2577 for(const int *work=nodeIdsToDuplicateBg;work!=nodeIdsToDuplicateEnd;work++,val++)
2579 int *conn=getNodalConnectivity()->getPointer();
2580 const int *connIndex=getNodalConnectivityIndex()->getConstPointer();
2581 int nbOfCells=getNumberOfCells();
2582 for(int i=0;i<nbOfCells;i++)
2583 for(int iconn=connIndex[i]+1;iconn!=connIndex[i+1];iconn++)
2585 int& node=conn[iconn];
2586 if(node>=0)//avoid polyhedron separator
2588 std::map<int,int>::iterator it=m.find(node);
2597 * This method renumbers cells of \a this using the array specified by [old2NewBg;old2NewBg+getNumberOfCells())
2599 * Contrary to MEDCouplingPointSet::renumberNodes, this method makes a permutation without any fuse of cell.
2600 * After the call of this method the number of cells remains the same as before.
2602 * If 'check' equals true the method will check that any elements in [ \a old2NewBg; \a old2NewEnd ) is unique ; if not
2603 * an INTERP_KERNEL::Exception will be thrown. When 'check' equals true [ \a old2NewBg ; \a old2NewEnd ) is not expected to
2604 * be strictly in [0;this->getNumberOfCells()).
2606 * If 'check' equals false the method will not check the content of [ \a old2NewBg ; \a old2NewEnd ).
2607 * To avoid any throw of SIGSEGV when 'check' equals false, the elements in [ \a old2NewBg ; \a old2NewEnd ) should be unique and
2608 * should be contained in[0;this->getNumberOfCells()).
2610 * \param [in] old2NewBg is expected to be a dynamically allocated pointer of size at least equal to this->getNumberOfCells()
2613 void MEDCouplingUMesh::renumberCells(const int *old2NewBg, bool check)
2615 checkConnectivityFullyDefined();
2616 int nbCells=getNumberOfCells();
2617 const int *array=old2NewBg;
2619 array=DataArrayInt::CheckAndPreparePermutation(old2NewBg,old2NewBg+nbCells);
2621 const int *conn=_nodal_connec->getConstPointer();
2622 const int *connI=_nodal_connec_index->getConstPointer();
2623 MCAuto<DataArrayInt> o2n=DataArrayInt::New(); o2n->useArray(array,false,C_DEALLOC,nbCells,1);
2624 MCAuto<DataArrayInt> n2o=o2n->invertArrayO2N2N2O(nbCells);
2625 const int *n2oPtr=n2o->begin();
2626 MCAuto<DataArrayInt> newConn=DataArrayInt::New();
2627 newConn->alloc(_nodal_connec->getNumberOfTuples(),_nodal_connec->getNumberOfComponents());
2628 newConn->copyStringInfoFrom(*_nodal_connec);
2629 MCAuto<DataArrayInt> newConnI=DataArrayInt::New();
2630 newConnI->alloc(_nodal_connec_index->getNumberOfTuples(),_nodal_connec_index->getNumberOfComponents());
2631 newConnI->copyStringInfoFrom(*_nodal_connec_index);
2633 int *newC=newConn->getPointer();
2634 int *newCI=newConnI->getPointer();
2637 for(int i=0;i<nbCells;i++)
2640 int nbOfElts=connI[pos+1]-connI[pos];
2641 newC=std::copy(conn+connI[pos],conn+connI[pos+1],newC);
2646 setConnectivity(newConn,newConnI);
2648 free(const_cast<int *>(array));
2652 * Finds cells whose bounding boxes intersect a given bounding box.
2653 * \param [in] bbox - an array defining the bounding box via coordinates of its
2654 * extremum points in "no interlace" mode, i.e. xMin, xMax, yMin, yMax, zMin,
2656 * \param [in] eps - a factor used to increase size of the bounding box of cell
2657 * before comparing it with \a bbox. This factor is multiplied by the maximal
2658 * extent of the bounding box of cell to produce an addition to this bounding box.
2659 * \return DataArrayInt * - a new instance of DataArrayInt holding ids for found
2660 * cells. The caller is to delete this array using decrRef() as it is no more
2662 * \throw If the coordinates array is not set.
2663 * \throw If the nodal connectivity of cells is not defined.
2665 * \if ENABLE_EXAMPLES
2666 * \ref cpp_mcumesh_getCellsInBoundingBox "Here is a C++ example".<br>
2667 * \ref py_mcumesh_getCellsInBoundingBox "Here is a Python example".
2670 DataArrayInt *MEDCouplingUMesh::getCellsInBoundingBox(const double *bbox, double eps) const
2672 MCAuto<DataArrayInt> elems=DataArrayInt::New(); elems->alloc(0,1);
2673 if(getMeshDimension()==-1)
2675 elems->pushBackSilent(0);
2676 return elems.retn();
2678 int dim=getSpaceDimension();
2679 INTERP_KERNEL::AutoPtr<double> elem_bb=new double[2*dim];
2680 const int* conn = getNodalConnectivity()->getConstPointer();
2681 const int* conn_index= getNodalConnectivityIndex()->getConstPointer();
2682 const double* coords = getCoords()->getConstPointer();
2683 int nbOfCells=getNumberOfCells();
2684 for ( int ielem=0; ielem<nbOfCells;ielem++ )
2686 for (int i=0; i<dim; i++)
2688 elem_bb[i*2]=std::numeric_limits<double>::max();
2689 elem_bb[i*2+1]=-std::numeric_limits<double>::max();
2692 for (int inode=conn_index[ielem]+1; inode<conn_index[ielem+1]; inode++)//+1 due to offset of cell type.
2694 int node= conn[inode];
2695 if(node>=0)//avoid polyhedron separator
2697 for (int idim=0; idim<dim; idim++)
2699 if ( coords[node*dim+idim] < elem_bb[idim*2] )
2701 elem_bb[idim*2] = coords[node*dim+idim] ;
2703 if ( coords[node*dim+idim] > elem_bb[idim*2+1] )
2705 elem_bb[idim*2+1] = coords[node*dim+idim] ;
2710 if (intersectsBoundingBox(elem_bb, bbox, dim, eps))
2711 elems->pushBackSilent(ielem);
2713 return elems.retn();
2717 * Given a boundary box 'bbox' returns elements 'elems' contained in this 'bbox' or touching 'bbox' (within 'eps' distance).
2718 * Warning 'elems' is incremented during the call so if elems is not empty before call returned elements will be
2719 * added in 'elems' parameter.
2721 DataArrayInt *MEDCouplingUMesh::getCellsInBoundingBox(const INTERP_KERNEL::DirectedBoundingBox& bbox, double eps)
2723 MCAuto<DataArrayInt> elems=DataArrayInt::New(); elems->alloc(0,1);
2724 if(getMeshDimension()==-1)
2726 elems->pushBackSilent(0);
2727 return elems.retn();
2729 int dim=getSpaceDimension();
2730 INTERP_KERNEL::AutoPtr<double> elem_bb=new double[2*dim];
2731 const int* conn = getNodalConnectivity()->getConstPointer();
2732 const int* conn_index= getNodalConnectivityIndex()->getConstPointer();
2733 const double* coords = getCoords()->getConstPointer();
2734 int nbOfCells=getNumberOfCells();
2735 for ( int ielem=0; ielem<nbOfCells;ielem++ )
2737 for (int i=0; i<dim; i++)
2739 elem_bb[i*2]=std::numeric_limits<double>::max();
2740 elem_bb[i*2+1]=-std::numeric_limits<double>::max();
2743 for (int inode=conn_index[ielem]+1; inode<conn_index[ielem+1]; inode++)//+1 due to offset of cell type.
2745 int node= conn[inode];
2746 if(node>=0)//avoid polyhedron separator
2748 for (int idim=0; idim<dim; idim++)
2750 if ( coords[node*dim+idim] < elem_bb[idim*2] )
2752 elem_bb[idim*2] = coords[node*dim+idim] ;
2754 if ( coords[node*dim+idim] > elem_bb[idim*2+1] )
2756 elem_bb[idim*2+1] = coords[node*dim+idim] ;
2761 if(intersectsBoundingBox(bbox, elem_bb, dim, eps))
2762 elems->pushBackSilent(ielem);
2764 return elems.retn();
2768 * Returns a type of a cell by its id.
2769 * \param [in] cellId - the id of the cell of interest.
2770 * \return INTERP_KERNEL::NormalizedCellType - enumeration item describing the cell type.
2771 * \throw If \a cellId is invalid. Valid range is [0, \a this->getNumberOfCells() ).
2773 INTERP_KERNEL::NormalizedCellType MEDCouplingUMesh::getTypeOfCell(std::size_t cellId) const
2775 const int *ptI(_nodal_connec_index->begin()),*pt(_nodal_connec->begin());
2776 if(cellId<_nodal_connec_index->getNbOfElems()-1)
2777 return (INTERP_KERNEL::NormalizedCellType) pt[ptI[cellId]];
2780 std::ostringstream oss; oss << "MEDCouplingUMesh::getTypeOfCell : Requesting type of cell #" << cellId << " but it should be in [0," << _nodal_connec_index->getNbOfElems()-1 << ") !";
2781 throw INTERP_KERNEL::Exception(oss.str());
2786 * This method returns a newly allocated array containing cell ids (ascendingly sorted) whose geometric type are equal to type.
2787 * This method does not throw exception if geometric type \a type is not in \a this.
2788 * This method throws an INTERP_KERNEL::Exception if meshdimension of \b this is not equal to those of \b type.
2789 * The coordinates array is not considered here.
2791 * \param [in] type the geometric type
2792 * \return cell ids in this having geometric type \a type.
2794 DataArrayInt *MEDCouplingUMesh::giveCellsWithType(INTERP_KERNEL::NormalizedCellType type) const
2797 MCAuto<DataArrayInt> ret=DataArrayInt::New();
2799 checkConnectivityFullyDefined();
2800 int nbCells=getNumberOfCells();
2801 int mdim=getMeshDimension();
2802 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(type);
2803 if(mdim!=(int)cm.getDimension())
2804 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::giveCellsWithType : Mismatch between mesh dimension and dimension of the cell !");
2805 const int *ptI=_nodal_connec_index->getConstPointer();
2806 const int *pt=_nodal_connec->getConstPointer();
2807 for(int i=0;i<nbCells;i++)
2809 if((INTERP_KERNEL::NormalizedCellType)pt[ptI[i]]==type)
2810 ret->pushBackSilent(i);
2816 * Returns nb of cells having the geometric type \a type. No throw if no cells in \a this has the geometric type \a type.
2818 std::size_t MEDCouplingUMesh::getNumberOfCellsWithType(INTERP_KERNEL::NormalizedCellType type) const
2820 const int *ptI(_nodal_connec_index->begin()),*pt(_nodal_connec->begin());
2821 std::size_t nbOfCells(getNumberOfCells()),ret(0);
2822 for(std::size_t i=0;i<nbOfCells;i++)
2823 if((INTERP_KERNEL::NormalizedCellType) pt[ptI[i]]==type)
2829 * Returns the nodal connectivity of a given cell.
2830 * The separator of faces within polyhedron connectivity (-1) is not returned, thus
2831 * all returned node ids can be used in getCoordinatesOfNode().
2832 * \param [in] cellId - an id of the cell of interest.
2833 * \param [in,out] conn - a vector where the node ids are appended. It is not
2834 * cleared before the appending.
2835 * \throw If \a cellId is invalid. Valid range is [0, \a this->getNumberOfCells() ).
2837 void MEDCouplingUMesh::getNodeIdsOfCell(std::size_t cellId, std::vector<int>& conn) const
2839 const int *ptI(_nodal_connec_index->begin()),*pt(_nodal_connec->begin());
2840 for(const int *w=pt+ptI[cellId]+1;w!=pt+ptI[cellId+1];w++)
2845 std::string MEDCouplingUMesh::simpleRepr() const
2847 static const char msg0[]="No coordinates specified !";
2848 std::ostringstream ret;
2849 ret << "Unstructured mesh with name : \"" << getName() << "\"\n";
2850 ret << "Description of mesh : \"" << getDescription() << "\"\n";
2852 double tt=getTime(tmpp1,tmpp2);
2853 ret << "Time attached to the mesh [unit] : " << tt << " [" << getTimeUnit() << "]\n";
2854 ret << "Iteration : " << tmpp1 << " Order : " << tmpp2 << "\n";
2856 { ret << "Mesh dimension : " << _mesh_dim << "\nSpace dimension : "; }
2858 { ret << " Mesh dimension has not been set or is invalid !"; }
2861 const int spaceDim=getSpaceDimension();
2862 ret << spaceDim << "\nInfo attached on space dimension : ";
2863 for(int i=0;i<spaceDim;i++)
2864 ret << "\"" << _coords->getInfoOnComponent(i) << "\" ";
2868 ret << msg0 << "\n";
2869 ret << "Number of nodes : ";
2871 ret << getNumberOfNodes() << "\n";
2873 ret << msg0 << "\n";
2874 ret << "Number of cells : ";
2875 if(_nodal_connec!=0 && _nodal_connec_index!=0)
2876 ret << getNumberOfCells() << "\n";
2878 ret << "No connectivity specified !" << "\n";
2879 ret << "Cell types present : ";
2880 for(std::set<INTERP_KERNEL::NormalizedCellType>::const_iterator iter=_types.begin();iter!=_types.end();iter++)
2882 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(*iter);
2883 ret << cm.getRepr() << " ";
2889 std::string MEDCouplingUMesh::advancedRepr() const
2891 std::ostringstream ret;
2892 ret << simpleRepr();
2893 ret << "\nCoordinates array : \n___________________\n\n";
2895 _coords->reprWithoutNameStream(ret);
2897 ret << "No array set !\n";
2898 ret << "\n\nConnectivity arrays : \n_____________________\n\n";
2899 reprConnectivityOfThisLL(ret);
2904 * This method returns a C++ code that is a dump of \a this.
2905 * This method will throw if this is not fully defined.
2907 std::string MEDCouplingUMesh::cppRepr() const
2909 static const char coordsName[]="coords";
2910 static const char connName[]="conn";
2911 static const char connIName[]="connI";
2912 checkFullyDefined();
2913 std::ostringstream ret; ret << "// coordinates" << std::endl;
2914 _coords->reprCppStream(coordsName,ret); ret << std::endl << "// connectivity" << std::endl;
2915 _nodal_connec->reprCppStream(connName,ret); ret << std::endl;
2916 _nodal_connec_index->reprCppStream(connIName,ret); ret << std::endl;
2917 ret << "MEDCouplingUMesh *mesh=MEDCouplingUMesh::New(\"" << getName() << "\"," << getMeshDimension() << ");" << std::endl;
2918 ret << "mesh->setCoords(" << coordsName << ");" << std::endl;
2919 ret << "mesh->setConnectivity(" << connName << "," << connIName << ",true);" << std::endl;
2920 ret << coordsName << "->decrRef(); " << connName << "->decrRef(); " << connIName << "->decrRef();" << std::endl;
2924 std::string MEDCouplingUMesh::reprConnectivityOfThis() const
2926 std::ostringstream ret;
2927 reprConnectivityOfThisLL(ret);
2932 * This method builds a newly allocated instance (with the same name than \a this) that the caller has the responsibility to deal with.
2933 * This method returns an instance with all arrays allocated (connectivity, connectivity index, coordinates)
2934 * but with length of these arrays set to 0. It allows to define an "empty" mesh (with nor cells nor nodes but compliant with
2937 * This method expects that \a this has a mesh dimension set and higher or equal to 0. If not an exception will be thrown.
2938 * This method analyzes the 3 arrays of \a this. For each the following behaviour is done : if the array is null a newly one is created
2939 * with number of tuples set to 0, if not the array is taken as this in the returned instance.
2941 MEDCouplingUMesh *MEDCouplingUMesh::buildSetInstanceFromThis(int spaceDim) const
2943 int mdim=getMeshDimension();
2945 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSetInstanceFromThis : invalid mesh dimension ! Should be >= 0 !");
2946 MCAuto<MEDCouplingUMesh> ret=MEDCouplingUMesh::New(getName(),mdim);
2947 MCAuto<DataArrayInt> tmp1,tmp2;
2948 bool needToCpyCT=true;
2951 tmp1=DataArrayInt::New(); tmp1->alloc(0,1);
2959 if(!_nodal_connec_index)
2961 tmp2=DataArrayInt::New(); tmp2->alloc(1,1); tmp2->setIJ(0,0,0);
2966 tmp2=_nodal_connec_index;
2969 ret->setConnectivity(tmp1,tmp2,false);
2974 MCAuto<DataArrayDouble> coords=DataArrayDouble::New(); coords->alloc(0,spaceDim);
2975 ret->setCoords(coords);
2978 ret->setCoords(_coords);
2982 int MEDCouplingUMesh::getNumberOfNodesInCell(int cellId) const
2984 const int *ptI=_nodal_connec_index->getConstPointer();
2985 const int *pt=_nodal_connec->getConstPointer();
2986 if(pt[ptI[cellId]]!=INTERP_KERNEL::NORM_POLYHED)
2987 return ptI[cellId+1]-ptI[cellId]-1;
2989 return (int)std::count_if(pt+ptI[cellId]+1,pt+ptI[cellId+1],std::bind2nd(std::not_equal_to<int>(),-1));
2993 * Returns types of cells of the specified part of \a this mesh.
2994 * This method avoids computing sub-mesh explicitly to get its types.
2995 * \param [in] begin - an array of cell ids of interest.
2996 * \param [in] end - the end of \a begin, i.e. a pointer to its (last+1)-th element.
2997 * \return std::set<INTERP_KERNEL::NormalizedCellType> - a set of enumeration items
2998 * describing the cell types.
2999 * \throw If the coordinates array is not set.
3000 * \throw If the nodal connectivity of cells is not defined.
3001 * \sa getAllGeoTypes()
3003 std::set<INTERP_KERNEL::NormalizedCellType> MEDCouplingUMesh::getTypesOfPart(const int *begin, const int *end) const
3005 checkFullyDefined();
3006 std::set<INTERP_KERNEL::NormalizedCellType> ret;
3007 const int *conn=_nodal_connec->getConstPointer();
3008 const int *connIndex=_nodal_connec_index->getConstPointer();
3009 for(const int *w=begin;w!=end;w++)
3010 ret.insert((INTERP_KERNEL::NormalizedCellType)conn[connIndex[*w]]);
3015 * Defines the nodal connectivity using given connectivity arrays in \ref numbering-indirect format.
3016 * Optionally updates
3017 * a set of types of cells constituting \a this mesh.
3018 * This method is for advanced users having prepared their connectivity before. For
3019 * more info on using this method see \ref MEDCouplingUMeshAdvBuild.
3020 * \param [in] conn - the nodal connectivity array.
3021 * \param [in] connIndex - the nodal connectivity index array.
3022 * \param [in] isComputingTypes - if \c true, the set of types constituting \a this
3025 void MEDCouplingUMesh::setConnectivity(DataArrayInt *conn, DataArrayInt *connIndex, bool isComputingTypes)
3027 DataArrayInt::SetArrayIn(conn,_nodal_connec);
3028 DataArrayInt::SetArrayIn(connIndex,_nodal_connec_index);
3029 if(isComputingTypes)
3035 * Copy constructor. If 'deepCopy' is false \a this is a shallow copy of other.
3036 * If 'deeCpy' is true all arrays (coordinates and connectivities) are deeply copied.
3038 MEDCouplingUMesh::MEDCouplingUMesh(const MEDCouplingUMesh& other, bool deepCpy):MEDCouplingPointSet(other,deepCpy),_mesh_dim(other._mesh_dim),
3039 _nodal_connec(0),_nodal_connec_index(0),
3040 _types(other._types)
3042 if(other._nodal_connec)
3043 _nodal_connec=other._nodal_connec->performCopyOrIncrRef(deepCpy);
3044 if(other._nodal_connec_index)
3045 _nodal_connec_index=other._nodal_connec_index->performCopyOrIncrRef(deepCpy);
3048 MEDCouplingUMesh::~MEDCouplingUMesh()
3051 _nodal_connec->decrRef();
3052 if(_nodal_connec_index)
3053 _nodal_connec_index->decrRef();
3057 * Recomputes a set of cell types of \a this mesh. For more info see
3058 * \ref MEDCouplingUMeshNodalConnectivity.
3060 void MEDCouplingUMesh::computeTypes()
3062 ComputeAllTypesInternal(_types,_nodal_connec,_nodal_connec_index);
3067 * Returns a number of cells constituting \a this mesh.
3068 * \return int - the number of cells in \a this mesh.
3069 * \throw If the nodal connectivity of cells is not defined.
3071 std::size_t MEDCouplingUMesh::getNumberOfCells() const
3073 if(_nodal_connec_index)
3074 return _nodal_connec_index->getNumberOfTuples()-1;
3079 throw INTERP_KERNEL::Exception("Unable to get number of cells because no connectivity specified !");
3083 * Returns a dimension of \a this mesh, i.e. a dimension of cells constituting \a this
3084 * mesh. For more info see \ref meshes.
3085 * \return int - the dimension of \a this mesh.
3086 * \throw If the mesh dimension is not defined using setMeshDimension().
3088 int MEDCouplingUMesh::getMeshDimension() const
3091 throw INTERP_KERNEL::Exception("No mesh dimension specified !");
3096 * Returns a length of the nodal connectivity array.
3097 * This method is for test reason. Normally the integer returned is not useable by
3098 * user. For more info see \ref MEDCouplingUMeshNodalConnectivity.
3099 * \return int - the length of the nodal connectivity array.
3101 int MEDCouplingUMesh::getNodalConnectivityArrayLen() const
3103 return _nodal_connec->getNbOfElems();
3107 * First step of serialization process. Used by ParaMEDMEM and MEDCouplingCorba to transfert data between process.
3109 void MEDCouplingUMesh::getTinySerializationInformation(std::vector<double>& tinyInfoD, std::vector<int>& tinyInfo, std::vector<std::string>& littleStrings) const
3111 MEDCouplingPointSet::getTinySerializationInformation(tinyInfoD,tinyInfo,littleStrings);
3112 tinyInfo.push_back(getMeshDimension());
3113 tinyInfo.push_back(getNumberOfCells());
3115 tinyInfo.push_back(getNodalConnectivityArrayLen());
3117 tinyInfo.push_back(-1);
3121 * First step of unserialization process.
3123 bool MEDCouplingUMesh::isEmptyMesh(const std::vector<int>& tinyInfo) const
3125 return tinyInfo[6]<=0;
3129 * Second step of serialization process.
3130 * \param tinyInfo must be equal to the result given by getTinySerializationInformation method.
3133 * \param littleStrings
3135 void MEDCouplingUMesh::resizeForUnserialization(const std::vector<int>& tinyInfo, DataArrayInt *a1, DataArrayDouble *a2, std::vector<std::string>& littleStrings) const
3137 MEDCouplingPointSet::resizeForUnserialization(tinyInfo,a1,a2,littleStrings);
3139 a1->alloc(tinyInfo[7]+tinyInfo[6]+1,1);
3143 * Third and final step of serialization process.
3145 void MEDCouplingUMesh::serialize(DataArrayInt *&a1, DataArrayDouble *&a2) const
3147 MEDCouplingPointSet::serialize(a1,a2);
3148 if(getMeshDimension()>-1)
3150 a1=DataArrayInt::New();
3151 a1->alloc(getNodalConnectivityArrayLen()+getNumberOfCells()+1,1);
3152 int *ptA1=a1->getPointer();
3153 const int *conn=getNodalConnectivity()->getConstPointer();
3154 const int *index=getNodalConnectivityIndex()->getConstPointer();
3155 ptA1=std::copy(index,index+getNumberOfCells()+1,ptA1);
3156 std::copy(conn,conn+getNodalConnectivityArrayLen(),ptA1);
3163 * Second and final unserialization process.
3164 * \param tinyInfo must be equal to the result given by getTinySerializationInformation method.
3166 void MEDCouplingUMesh::unserialization(const std::vector<double>& tinyInfoD, const std::vector<int>& tinyInfo, const DataArrayInt *a1, DataArrayDouble *a2, const std::vector<std::string>& littleStrings)
3168 MEDCouplingPointSet::unserialization(tinyInfoD,tinyInfo,a1,a2,littleStrings);
3169 setMeshDimension(tinyInfo[5]);
3173 const int *recvBuffer=a1->getConstPointer();
3174 MCAuto<DataArrayInt> myConnecIndex=DataArrayInt::New();
3175 myConnecIndex->alloc(tinyInfo[6]+1,1);
3176 std::copy(recvBuffer,recvBuffer+tinyInfo[6]+1,myConnecIndex->getPointer());
3177 MCAuto<DataArrayInt> myConnec=DataArrayInt::New();
3178 myConnec->alloc(tinyInfo[7],1);
3179 std::copy(recvBuffer+tinyInfo[6]+1,recvBuffer+tinyInfo[6]+1+tinyInfo[7],myConnec->getPointer());
3180 setConnectivity(myConnec, myConnecIndex);
3187 * Returns a new MEDCouplingFieldDouble containing volumes of cells constituting \a this
3189 * For 1D cells, the returned field contains lengths.<br>
3190 * For 2D cells, the returned field contains areas.<br>
3191 * For 3D cells, the returned field contains volumes.
3192 * \param [in] isAbs - if \c true, the computed cell volume does not reflect cell
3193 * orientation, i.e. the volume is always positive.
3194 * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on cells
3195 * and one time . The caller is to delete this field using decrRef() as it is no
3198 MEDCouplingFieldDouble *MEDCouplingUMesh::getMeasureField(bool isAbs) const
3200 std::string name="MeasureOfMesh_";
3202 int nbelem=getNumberOfCells();
3203 MCAuto<MEDCouplingFieldDouble> field=MEDCouplingFieldDouble::New(ON_CELLS,ONE_TIME);
3204 field->setName(name);
3205 MCAuto<DataArrayDouble> array=DataArrayDouble::New();
3206 array->alloc(nbelem,1);
3207 double *area_vol=array->getPointer();
3208 field->setArray(array) ; array=0;
3209 field->setMesh(const_cast<MEDCouplingUMesh *>(this));
3210 field->synchronizeTimeWithMesh();
3211 if(getMeshDimension()!=-1)
3214 INTERP_KERNEL::NormalizedCellType type;
3215 int dim_space=getSpaceDimension();
3216 const double *coords=getCoords()->getConstPointer();
3217 const int *connec=getNodalConnectivity()->getConstPointer();
3218 const int *connec_index=getNodalConnectivityIndex()->getConstPointer();
3219 for(int iel=0;iel<nbelem;iel++)
3221 ipt=connec_index[iel];
3222 type=(INTERP_KERNEL::NormalizedCellType)connec[ipt];
3223 area_vol[iel]=INTERP_KERNEL::computeVolSurfOfCell2<int,INTERP_KERNEL::ALL_C_MODE>(type,connec+ipt+1,connec_index[iel+1]-ipt-1,coords,dim_space);
3226 std::transform(area_vol,area_vol+nbelem,area_vol,std::ptr_fun<double,double>(fabs));
3230 area_vol[0]=std::numeric_limits<double>::max();
3232 return field.retn();
3236 * Returns a new DataArrayDouble containing volumes of specified cells of \a this
3238 * For 1D cells, the returned array contains lengths.<br>
3239 * For 2D cells, the returned array contains areas.<br>
3240 * For 3D cells, the returned array contains volumes.
3241 * This method avoids building explicitly a part of \a this mesh to perform the work.
3242 * \param [in] isAbs - if \c true, the computed cell volume does not reflect cell
3243 * orientation, i.e. the volume is always positive.
3244 * \param [in] begin - an array of cell ids of interest.
3245 * \param [in] end - the end of \a begin, i.e. a pointer to its (last+1)-th element.
3246 * \return DataArrayDouble * - a new instance of DataArrayDouble. The caller is to
3247 * delete this array using decrRef() as it is no more needed.
3249 * \if ENABLE_EXAMPLES
3250 * \ref cpp_mcumesh_getPartMeasureField "Here is a C++ example".<br>
3251 * \ref py_mcumesh_getPartMeasureField "Here is a Python example".
3253 * \sa getMeasureField()
3255 DataArrayDouble *MEDCouplingUMesh::getPartMeasureField(bool isAbs, const int *begin, const int *end) const
3257 std::string name="PartMeasureOfMesh_";
3259 int nbelem=(int)std::distance(begin,end);
3260 MCAuto<DataArrayDouble> array=DataArrayDouble::New();
3261 array->setName(name);
3262 array->alloc(nbelem,1);
3263 double *area_vol=array->getPointer();
3264 if(getMeshDimension()!=-1)
3267 INTERP_KERNEL::NormalizedCellType type;
3268 int dim_space=getSpaceDimension();
3269 const double *coords=getCoords()->getConstPointer();
3270 const int *connec=getNodalConnectivity()->getConstPointer();
3271 const int *connec_index=getNodalConnectivityIndex()->getConstPointer();
3272 for(const int *iel=begin;iel!=end;iel++)
3274 ipt=connec_index[*iel];
3275 type=(INTERP_KERNEL::NormalizedCellType)connec[ipt];
3276 *area_vol++=INTERP_KERNEL::computeVolSurfOfCell2<int,INTERP_KERNEL::ALL_C_MODE>(type,connec+ipt+1,connec_index[*iel+1]-ipt-1,coords,dim_space);
3279 std::transform(array->getPointer(),area_vol,array->getPointer(),std::ptr_fun<double,double>(fabs));
3283 area_vol[0]=std::numeric_limits<double>::max();
3285 return array.retn();
3289 * Returns a new MEDCouplingFieldDouble containing volumes of cells of a dual mesh of
3290 * \a this one. The returned field contains the dual cell volume for each corresponding
3291 * node in \a this mesh. In other words, the field returns the getMeasureField() of
3292 * the dual mesh in P1 sens of \a this.<br>
3293 * For 1D cells, the returned field contains lengths.<br>
3294 * For 2D cells, the returned field contains areas.<br>
3295 * For 3D cells, the returned field contains volumes.
3296 * This method is useful to check "P1*" conservative interpolators.
3297 * \param [in] isAbs - if \c true, the computed cell volume does not reflect cell
3298 * orientation, i.e. the volume is always positive.
3299 * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
3300 * nodes and one time. The caller is to delete this array using decrRef() as
3301 * it is no more needed.
3303 MEDCouplingFieldDouble *MEDCouplingUMesh::getMeasureFieldOnNode(bool isAbs) const
3305 MCAuto<MEDCouplingFieldDouble> tmp=getMeasureField(isAbs);
3306 std::string name="MeasureOnNodeOfMesh_";
3308 int nbNodes=getNumberOfNodes();
3309 MCAuto<MEDCouplingFieldDouble> ret=MEDCouplingFieldDouble::New(ON_NODES);
3310 double cst=1./((double)getMeshDimension()+1.);
3311 MCAuto<DataArrayDouble> array=DataArrayDouble::New();
3312 array->alloc(nbNodes,1);
3313 double *valsToFill=array->getPointer();
3314 std::fill(valsToFill,valsToFill+nbNodes,0.);
3315 const double *values=tmp->getArray()->getConstPointer();
3316 MCAuto<DataArrayInt> da=DataArrayInt::New();
3317 MCAuto<DataArrayInt> daInd=DataArrayInt::New();
3318 getReverseNodalConnectivity(da,daInd);
3319 const int *daPtr=da->getConstPointer();
3320 const int *daIPtr=daInd->getConstPointer();
3321 for(int i=0;i<nbNodes;i++)
3322 for(const int *cell=daPtr+daIPtr[i];cell!=daPtr+daIPtr[i+1];cell++)
3323 valsToFill[i]+=cst*values[*cell];
3325 ret->setArray(array);
3330 * Returns a new MEDCouplingFieldDouble holding normal vectors to cells of \a this
3331 * mesh. The returned normal vectors to each cell have a norm2 equal to 1.
3332 * The computed vectors have <em> this->getMeshDimension()+1 </em> components
3333 * and are normalized.
3334 * <br> \a this can be either
3335 * - a 2D mesh in 2D or 3D space or
3336 * - an 1D mesh in 2D space.
3338 * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
3339 * cells and one time. The caller is to delete this field using decrRef() as
3340 * it is no more needed.
3341 * \throw If the nodal connectivity of cells is not defined.
3342 * \throw If the coordinates array is not set.
3343 * \throw If the mesh dimension is not set.
3344 * \throw If the mesh and space dimension is not as specified above.
3346 MEDCouplingFieldDouble *MEDCouplingUMesh::buildOrthogonalField() const
3348 if((getMeshDimension()!=2) && (getMeshDimension()!=1 || getSpaceDimension()!=2))
3349 throw INTERP_KERNEL::Exception("Expected a umesh with ( meshDim == 2 spaceDim == 2 or 3 ) or ( meshDim == 1 spaceDim == 2 ) !");
3350 MCAuto<MEDCouplingFieldDouble> ret=MEDCouplingFieldDouble::New(ON_CELLS,ONE_TIME);
3351 MCAuto<DataArrayDouble> array=DataArrayDouble::New();
3352 int nbOfCells=getNumberOfCells();
3353 int nbComp=getMeshDimension()+1;
3354 array->alloc(nbOfCells,nbComp);
3355 double *vals=array->getPointer();
3356 const int *connI=_nodal_connec_index->getConstPointer();
3357 const int *conn=_nodal_connec->getConstPointer();
3358 const double *coords=_coords->getConstPointer();
3359 if(getMeshDimension()==2)
3361 if(getSpaceDimension()==3)
3363 MCAuto<DataArrayDouble> loc=computeCellCenterOfMass();
3364 const double *locPtr=loc->getConstPointer();
3365 for(int i=0;i<nbOfCells;i++,vals+=3)
3367 int offset=connI[i];
3368 INTERP_KERNEL::crossprod<3>(locPtr+3*i,coords+3*conn[offset+1],coords+3*conn[offset+2],vals);
3369 double n=INTERP_KERNEL::norm<3>(vals);
3370 std::transform(vals,vals+3,vals,std::bind2nd(std::multiplies<double>(),1./n));
3375 MCAuto<MEDCouplingFieldDouble> isAbs=getMeasureField(false);
3376 const double *isAbsPtr=isAbs->getArray()->begin();
3377 for(int i=0;i<nbOfCells;i++,isAbsPtr++)
3378 { vals[3*i]=0.; vals[3*i+1]=0.; vals[3*i+2]=*isAbsPtr>0.?1.:-1.; }
3381 else//meshdimension==1
3384 for(int i=0;i<nbOfCells;i++)
3386 int offset=connI[i];
3387 std::transform(coords+2*conn[offset+2],coords+2*conn[offset+2]+2,coords+2*conn[offset+1],tmp,std::minus<double>());
3388 double n=INTERP_KERNEL::norm<2>(tmp);
3389 std::transform(tmp,tmp+2,tmp,std::bind2nd(std::multiplies<double>(),1./n));
3394 ret->setArray(array);
3396 ret->synchronizeTimeWithSupport();
3401 * Returns a new MEDCouplingFieldDouble holding normal vectors to specified cells of
3402 * \a this mesh. The computed vectors have <em> this->getMeshDimension()+1 </em> components
3403 * and are normalized.
3404 * <br> \a this can be either
3405 * - a 2D mesh in 2D or 3D space or
3406 * - an 1D mesh in 2D space.
3408 * This method avoids building explicitly a part of \a this mesh to perform the work.
3409 * \param [in] begin - an array of cell ids of interest.
3410 * \param [in] end - the end of \a begin, i.e. a pointer to its (last+1)-th element.
3411 * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
3412 * cells and one time. The caller is to delete this field using decrRef() as
3413 * it is no more needed.
3414 * \throw If the nodal connectivity of cells is not defined.
3415 * \throw If the coordinates array is not set.
3416 * \throw If the mesh dimension is not set.
3417 * \throw If the mesh and space dimension is not as specified above.
3418 * \sa buildOrthogonalField()
3420 * \if ENABLE_EXAMPLES
3421 * \ref cpp_mcumesh_buildPartOrthogonalField "Here is a C++ example".<br>
3422 * \ref py_mcumesh_buildPartOrthogonalField "Here is a Python example".
3425 MEDCouplingFieldDouble *MEDCouplingUMesh::buildPartOrthogonalField(const int *begin, const int *end) const
3427 if((getMeshDimension()!=2) && (getMeshDimension()!=1 || getSpaceDimension()!=2))
3428 throw INTERP_KERNEL::Exception("Expected a umesh with ( meshDim == 2 spaceDim == 2 or 3 ) or ( meshDim == 1 spaceDim == 2 ) !");
3429 MCAuto<MEDCouplingFieldDouble> ret=MEDCouplingFieldDouble::New(ON_CELLS,ONE_TIME);
3430 MCAuto<DataArrayDouble> array=DataArrayDouble::New();
3431 std::size_t nbelems=std::distance(begin,end);
3432 int nbComp=getMeshDimension()+1;
3433 array->alloc((int)nbelems,nbComp);
3434 double *vals=array->getPointer();
3435 const int *connI=_nodal_connec_index->getConstPointer();
3436 const int *conn=_nodal_connec->getConstPointer();
3437 const double *coords=_coords->getConstPointer();
3438 if(getMeshDimension()==2)
3440 if(getSpaceDimension()==3)
3442 MCAuto<DataArrayDouble> loc=getPartBarycenterAndOwner(begin,end);
3443 const double *locPtr=loc->getConstPointer();
3444 for(const int *i=begin;i!=end;i++,vals+=3,locPtr+=3)
3446 int offset=connI[*i];
3447 INTERP_KERNEL::crossprod<3>(locPtr,coords+3*conn[offset+1],coords+3*conn[offset+2],vals);
3448 double n=INTERP_KERNEL::norm<3>(vals);
3449 std::transform(vals,vals+3,vals,std::bind2nd(std::multiplies<double>(),1./n));
3454 for(std::size_t i=0;i<nbelems;i++)
3455 { vals[3*i]=0.; vals[3*i+1]=0.; vals[3*i+2]=1.; }
3458 else//meshdimension==1
3461 for(const int *i=begin;i!=end;i++)
3463 int offset=connI[*i];
3464 std::transform(coords+2*conn[offset+2],coords+2*conn[offset+2]+2,coords+2*conn[offset+1],tmp,std::minus<double>());
3465 double n=INTERP_KERNEL::norm<2>(tmp);
3466 std::transform(tmp,tmp+2,tmp,std::bind2nd(std::multiplies<double>(),1./n));
3471 ret->setArray(array);
3473 ret->synchronizeTimeWithSupport();
3478 * Returns a new MEDCouplingFieldDouble holding a direction vector for each SEG2 in \a
3479 * this 1D mesh. The computed vectors have <em> this->getSpaceDimension() </em> components
3480 * and are \b not normalized.
3481 * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
3482 * cells and one time. The caller is to delete this field using decrRef() as
3483 * it is no more needed.
3484 * \throw If the nodal connectivity of cells is not defined.
3485 * \throw If the coordinates array is not set.
3486 * \throw If \a this->getMeshDimension() != 1.
3487 * \throw If \a this mesh includes cells of type other than SEG2.
3489 MEDCouplingFieldDouble *MEDCouplingUMesh::buildDirectionVectorField() const
3491 if(getMeshDimension()!=1)
3492 throw INTERP_KERNEL::Exception("Expected a umesh with meshDim == 1 for buildDirectionVectorField !");
3493 if(_types.size()!=1 || *(_types.begin())!=INTERP_KERNEL::NORM_SEG2)
3494 throw INTERP_KERNEL::Exception("Expected a umesh with only NORM_SEG2 type of elements for buildDirectionVectorField !");
3495 MCAuto<MEDCouplingFieldDouble> ret=MEDCouplingFieldDouble::New(ON_CELLS,ONE_TIME);
3496 MCAuto<DataArrayDouble> array=DataArrayDouble::New();
3497 int nbOfCells=getNumberOfCells();
3498 int spaceDim=getSpaceDimension();
3499 array->alloc(nbOfCells,spaceDim);
3500 double *pt=array->getPointer();
3501 const double *coo=getCoords()->getConstPointer();
3502 std::vector<int> conn;
3504 for(int i=0;i<nbOfCells;i++)
3507 getNodeIdsOfCell(i,conn);
3508 pt=std::transform(coo+conn[1]*spaceDim,coo+(conn[1]+1)*spaceDim,coo+conn[0]*spaceDim,pt,std::minus<double>());
3510 ret->setArray(array);
3512 ret->synchronizeTimeWithSupport();
3517 * Creates a 2D mesh by cutting \a this 3D mesh with a plane. In addition to the mesh,
3518 * returns a new DataArrayInt, of length equal to the number of 2D cells in the result
3519 * mesh, holding, for each cell in the result mesh, an id of a 3D cell it comes
3520 * from. If a result face is shared by two 3D cells, then the face in included twice in
3522 * \param [in] origin - 3 components of a point defining location of the plane.
3523 * \param [in] vec - 3 components of a vector normal to the plane. Vector magnitude
3524 * must be greater than 1e-6.
3525 * \param [in] eps - half-thickness of the plane.
3526 * \param [out] cellIds - a new instance of DataArrayInt holding ids of 3D cells
3527 * producing correspondent 2D cells. The caller is to delete this array
3528 * using decrRef() as it is no more needed.
3529 * \return MEDCouplingUMesh * - a new instance of MEDCouplingUMesh. This mesh does
3530 * not share the node coordinates array with \a this mesh. The caller is to
3531 * delete this mesh using decrRef() as it is no more needed.
3532 * \throw If the coordinates array is not set.
3533 * \throw If the nodal connectivity of cells is not defined.
3534 * \throw If \a this->getMeshDimension() != 3 or \a this->getSpaceDimension() != 3.
3535 * \throw If magnitude of \a vec is less than 1e-6.
3536 * \throw If the plane does not intersect any 3D cell of \a this mesh.
3537 * \throw If \a this includes quadratic cells.
3539 MEDCouplingUMesh *MEDCouplingUMesh::buildSlice3D(const double *origin, const double *vec, double eps, DataArrayInt *&cellIds) const
3541 checkFullyDefined();
3542 if(getMeshDimension()!=3 || getSpaceDimension()!=3)
3543 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSlice3D works on umeshes with meshdim equal to 3 and spaceDim equal to 3 too!");
3544 MCAuto<DataArrayInt> candidates=getCellIdsCrossingPlane(origin,vec,eps);
3545 if(candidates->empty())
3546 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSlice3D : No 3D cells in this intercepts the specified plane considering bounding boxes !");
3547 std::vector<int> nodes;
3548 DataArrayInt *cellIds1D=0;
3549 MCAuto<MEDCouplingUMesh> subMesh=static_cast<MEDCouplingUMesh*>(buildPartOfMySelf(candidates->begin(),candidates->end(),false));
3550 subMesh->findNodesOnPlane(origin,vec,eps,nodes);
3551 MCAuto<DataArrayInt> desc1=DataArrayInt::New(),desc2=DataArrayInt::New();
3552 MCAuto<DataArrayInt> descIndx1=DataArrayInt::New(),descIndx2=DataArrayInt::New();
3553 MCAuto<DataArrayInt> revDesc1=DataArrayInt::New(),revDesc2=DataArrayInt::New();
3554 MCAuto<DataArrayInt> revDescIndx1=DataArrayInt::New(),revDescIndx2=DataArrayInt::New();
3555 MCAuto<MEDCouplingUMesh> mDesc2=subMesh->buildDescendingConnectivity(desc2,descIndx2,revDesc2,revDescIndx2);//meshDim==2 spaceDim==3
3556 revDesc2=0; revDescIndx2=0;
3557 MCAuto<MEDCouplingUMesh> mDesc1=mDesc2->buildDescendingConnectivity(desc1,descIndx1,revDesc1,revDescIndx1);//meshDim==1 spaceDim==3
3558 revDesc1=0; revDescIndx1=0;
3559 mDesc1->fillCellIdsToKeepFromNodeIds(&nodes[0],&nodes[0]+nodes.size(),true,cellIds1D);
3560 MCAuto<DataArrayInt> cellIds1DTmp(cellIds1D);
3562 std::vector<int> cut3DCurve(mDesc1->getNumberOfCells(),-2);
3563 for(const int *it=cellIds1D->begin();it!=cellIds1D->end();it++)
3565 mDesc1->split3DCurveWithPlane(origin,vec,eps,cut3DCurve);
3566 std::vector< std::pair<int,int> > cut3DSurf(mDesc2->getNumberOfCells());
3567 AssemblyForSplitFrom3DCurve(cut3DCurve,nodes,mDesc2->getNodalConnectivity()->getConstPointer(),mDesc2->getNodalConnectivityIndex()->getConstPointer(),
3568 mDesc1->getNodalConnectivity()->getConstPointer(),mDesc1->getNodalConnectivityIndex()->getConstPointer(),
3569 desc1->getConstPointer(),descIndx1->getConstPointer(),cut3DSurf);
3570 MCAuto<DataArrayInt> conn(DataArrayInt::New()),connI(DataArrayInt::New()),cellIds2(DataArrayInt::New());
3571 connI->pushBackSilent(0); conn->alloc(0,1); cellIds2->alloc(0,1);
3572 subMesh->assemblyForSplitFrom3DSurf(cut3DSurf,desc2->getConstPointer(),descIndx2->getConstPointer(),conn,connI,cellIds2);
3573 if(cellIds2->empty())
3574 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSlice3D : No 3D cells in this intercepts the specified plane !");
3575 MCAuto<MEDCouplingUMesh> ret=MEDCouplingUMesh::New("Slice3D",2);
3576 ret->setCoords(mDesc1->getCoords());
3577 ret->setConnectivity(conn,connI,true);
3578 cellIds=candidates->selectByTupleId(cellIds2->begin(),cellIds2->end());
3583 * Creates an 1D mesh by cutting \a this 2D mesh in 3D space with a plane. In
3584 addition to the mesh, returns a new DataArrayInt, of length equal to the number of 1D cells in the result mesh, holding, for each cell in the result mesh, an id of a 2D cell it comes
3585 from. If a result segment is shared by two 2D cells, then the segment in included twice in
3587 * \param [in] origin - 3 components of a point defining location of the plane.
3588 * \param [in] vec - 3 components of a vector normal to the plane. Vector magnitude
3589 * must be greater than 1e-6.
3590 * \param [in] eps - half-thickness of the plane.
3591 * \param [out] cellIds - a new instance of DataArrayInt holding ids of faces
3592 * producing correspondent segments. The caller is to delete this array
3593 * using decrRef() as it is no more needed.
3594 * \return MEDCouplingUMesh * - a new instance of MEDCouplingUMesh. This is an 1D
3595 * mesh in 3D space. This mesh does not share the node coordinates array with
3596 * \a this mesh. The caller is to delete this mesh using decrRef() as it is
3598 * \throw If the coordinates array is not set.
3599 * \throw If the nodal connectivity of cells is not defined.
3600 * \throw If \a this->getMeshDimension() != 2 or \a this->getSpaceDimension() != 3.
3601 * \throw If magnitude of \a vec is less than 1e-6.
3602 * \throw If the plane does not intersect any 2D cell of \a this mesh.
3603 * \throw If \a this includes quadratic cells.
3605 MEDCouplingUMesh *MEDCouplingUMesh::buildSlice3DSurf(const double *origin, const double *vec, double eps, DataArrayInt *&cellIds) const
3607 checkFullyDefined();
3608 if(getMeshDimension()!=2 || getSpaceDimension()!=3)
3609 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSlice3DSurf works on umeshes with meshdim equal to 2 and spaceDim equal to 3 !");
3610 MCAuto<DataArrayInt> candidates(getCellIdsCrossingPlane(origin,vec,eps));
3611 if(candidates->empty())
3612 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSlice3DSurf : No 3D surf cells in this intercepts the specified plane considering bounding boxes !");
3613 std::vector<int> nodes;
3614 DataArrayInt *cellIds1D(0);
3615 MCAuto<MEDCouplingUMesh> subMesh(buildPartOfMySelf(candidates->begin(),candidates->end(),false));
3616 subMesh->findNodesOnPlane(origin,vec,eps,nodes);
3617 MCAuto<DataArrayInt> desc1(DataArrayInt::New()),descIndx1(DataArrayInt::New()),revDesc1(DataArrayInt::New()),revDescIndx1(DataArrayInt::New());
3618 MCAuto<MEDCouplingUMesh> mDesc1(subMesh->buildDescendingConnectivity(desc1,descIndx1,revDesc1,revDescIndx1));//meshDim==1 spaceDim==3
3619 mDesc1->fillCellIdsToKeepFromNodeIds(&nodes[0],&nodes[0]+nodes.size(),true,cellIds1D);
3620 MCAuto<DataArrayInt> cellIds1DTmp(cellIds1D);
3622 std::vector<int> cut3DCurve(mDesc1->getNumberOfCells(),-2);
3623 for(const int *it=cellIds1D->begin();it!=cellIds1D->end();it++)
3625 mDesc1->split3DCurveWithPlane(origin,vec,eps,cut3DCurve);
3626 int ncellsSub=subMesh->getNumberOfCells();
3627 std::vector< std::pair<int,int> > cut3DSurf(ncellsSub);
3628 AssemblyForSplitFrom3DCurve(cut3DCurve,nodes,subMesh->getNodalConnectivity()->getConstPointer(),subMesh->getNodalConnectivityIndex()->getConstPointer(),
3629 mDesc1->getNodalConnectivity()->getConstPointer(),mDesc1->getNodalConnectivityIndex()->getConstPointer(),
3630 desc1->getConstPointer(),descIndx1->getConstPointer(),cut3DSurf);
3631 MCAuto<DataArrayInt> conn(DataArrayInt::New()),connI(DataArrayInt::New()),cellIds2(DataArrayInt::New()); connI->pushBackSilent(0);
3633 const int *nodal=subMesh->getNodalConnectivity()->getConstPointer();
3634 const int *nodalI=subMesh->getNodalConnectivityIndex()->getConstPointer();
3635 for(int i=0;i<ncellsSub;i++)
3637 if(cut3DSurf[i].first!=-1 && cut3DSurf[i].second!=-1)
3639 if(cut3DSurf[i].first!=-2)
3641 conn->pushBackSilent((int)INTERP_KERNEL::NORM_SEG2); conn->pushBackSilent(cut3DSurf[i].first); conn->pushBackSilent(cut3DSurf[i].second);
3642 connI->pushBackSilent(conn->getNumberOfTuples());
3643 cellIds2->pushBackSilent(i);
3647 int cellId3DSurf=cut3DSurf[i].second;
3648 int offset=nodalI[cellId3DSurf]+1;
3649 int nbOfEdges=nodalI[cellId3DSurf+1]-offset;
3650 for(int j=0;j<nbOfEdges;j++)
3652 conn->pushBackSilent((int)INTERP_KERNEL::NORM_SEG2); conn->pushBackSilent(nodal[offset+j]); conn->pushBackSilent(nodal[offset+(j+1)%nbOfEdges]);
3653 connI->pushBackSilent(conn->getNumberOfTuples());
3654 cellIds2->pushBackSilent(cellId3DSurf);
3659 if(cellIds2->empty())
3660 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSlice3DSurf : No 3DSurf cells in this intercepts the specified plane !");
3661 MCAuto<MEDCouplingUMesh> ret=MEDCouplingUMesh::New("Slice3DSurf",1);
3662 ret->setCoords(mDesc1->getCoords());
3663 ret->setConnectivity(conn,connI,true);
3664 cellIds=candidates->selectByTupleId(cellIds2->begin(),cellIds2->end());
3668 MCAuto<MEDCouplingUMesh> MEDCouplingUMesh::clipSingle3DCellByPlane(const double origin[3], const double vec[3], double eps) const
3670 checkFullyDefined();
3671 if(getMeshDimension()!=3 || getSpaceDimension()!=3)
3672 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::clipSingle3DCellByPlane works on umeshes with meshdim equal to 3 and spaceDim equal to 3 too!");
3673 if(getNumberOfCells()!=1)
3674 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::clipSingle3DCellByPlane works only on mesh containing exactly one cell !");
3676 std::vector<int> nodes;
3677 findNodesOnPlane(origin,vec,eps,nodes);
3678 MCAuto<DataArrayInt> desc1(DataArrayInt::New()),desc2(DataArrayInt::New()),descIndx1(DataArrayInt::New()),descIndx2(DataArrayInt::New()),revDesc1(DataArrayInt::New()),revDesc2(DataArrayInt::New()),revDescIndx1(DataArrayInt::New()),revDescIndx2(DataArrayInt::New());
3679 MCAuto<MEDCouplingUMesh> mDesc2(buildDescendingConnectivity(desc2,descIndx2,revDesc2,revDescIndx2));//meshDim==2 spaceDim==3
3680 revDesc2=0; revDescIndx2=0;
3681 MCAuto<MEDCouplingUMesh> mDesc1(mDesc2->buildDescendingConnectivity(desc1,descIndx1,revDesc1,revDescIndx1));//meshDim==1 spaceDim==3
3682 revDesc1=0; revDescIndx1=0;
3683 DataArrayInt *cellIds1D(0);
3684 mDesc1->fillCellIdsToKeepFromNodeIds(&nodes[0],&nodes[0]+nodes.size(),true,cellIds1D);
3685 MCAuto<DataArrayInt> cellIds1DTmp(cellIds1D);
3686 std::vector<int> cut3DCurve(mDesc1->getNumberOfCells(),-2);
3687 for(const int *it=cellIds1D->begin();it!=cellIds1D->end();it++)
3691 int oldNbNodes(mDesc1->getNumberOfNodes());
3692 mDesc1->split3DCurveWithPlane(origin,vec,eps,cut3DCurve);
3693 sameNbNodes=(mDesc1->getNumberOfNodes()==oldNbNodes);
3695 std::vector< std::pair<int,int> > cut3DSurf(mDesc2->getNumberOfCells());
3696 AssemblyForSplitFrom3DCurve(cut3DCurve,nodes,mDesc2->getNodalConnectivity()->begin(),mDesc2->getNodalConnectivityIndex()->begin(),
3697 mDesc1->getNodalConnectivity()->begin(),mDesc1->getNodalConnectivityIndex()->begin(),
3698 desc1->begin(),descIndx1->begin(),cut3DSurf);
3699 MCAuto<DataArrayInt> conn(DataArrayInt::New()),connI(DataArrayInt::New());
3700 connI->pushBackSilent(0); conn->alloc(0,1);
3702 MCAuto<DataArrayInt> cellIds2(DataArrayInt::New()); cellIds2->alloc(0,1);
3703 assemblyForSplitFrom3DSurf(cut3DSurf,desc2->begin(),descIndx2->begin(),conn,connI,cellIds2);
3704 if(cellIds2->empty())
3705 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSlice3D : No 3D cells in this intercepts the specified plane !");
3707 std::vector<std::vector<int> > res;
3708 buildSubCellsFromCut(cut3DSurf,desc2->begin(),descIndx2->begin(),mDesc1->getCoords()->begin(),eps,res);
3709 std::size_t sz(res.size());
3710 if(res.size()==mDesc1->getNumberOfCells() && sameNbNodes)
3711 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::clipSingle3DCellByPlane : cell is not clipped !");
3712 for(std::size_t i=0;i<sz;i++)
3714 conn->pushBackSilent((int)INTERP_KERNEL::NORM_POLYGON);
3715 conn->insertAtTheEnd(res[i].begin(),res[i].end());
3716 connI->pushBackSilent(conn->getNumberOfTuples());
3718 MCAuto<MEDCouplingUMesh> ret(MEDCouplingUMesh::New("",2));
3719 ret->setCoords(mDesc1->getCoords());
3720 ret->setConnectivity(conn,connI,true);
3721 int nbCellsRet(ret->getNumberOfCells());
3723 MCAuto<DataArrayDouble> vec2(DataArrayDouble::New()); vec2->alloc(1,3); std::copy(vec,vec+3,vec2->getPointer());
3724 MCAuto<MEDCouplingFieldDouble> ortho(ret->buildOrthogonalField());
3725 MCAuto<DataArrayDouble> ortho2(ortho->getArray()->selectByTupleIdSafeSlice(0,1,1));
3726 MCAuto<DataArrayDouble> dott(DataArrayDouble::Dot(ortho2,vec2));
3727 MCAuto<DataArrayDouble> ccm(ret->computeCellCenterOfMass());
3728 MCAuto<DataArrayDouble> occm;
3730 MCAuto<DataArrayDouble> pt(DataArrayDouble::New()); pt->alloc(1,3); std::copy(origin,origin+3,pt->getPointer());
3731 occm=DataArrayDouble::Substract(ccm,pt);
3733 vec2=DataArrayDouble::New(); vec2->alloc(nbCellsRet,3);
3734 vec2->setPartOfValuesSimple1(vec[0],0,nbCellsRet,1,0,1,1); vec2->setPartOfValuesSimple1(vec[1],0,nbCellsRet,1,1,2,1); vec2->setPartOfValuesSimple1(vec[2],0,nbCellsRet,1,2,3,1);
3735 MCAuto<DataArrayDouble> dott2(DataArrayDouble::Dot(occm,vec2));
3737 const int *cPtr(ret->getNodalConnectivity()->begin()),*ciPtr(ret->getNodalConnectivityIndex()->begin());
3738 MCAuto<MEDCouplingUMesh> ret2(MEDCouplingUMesh::New("Clip3D",3));
3739 ret2->setCoords(mDesc1->getCoords());
3740 MCAuto<DataArrayInt> conn2(DataArrayInt::New()),conn2I(DataArrayInt::New());
3741 conn2I->pushBackSilent(0); conn2->alloc(0,1);
3742 std::vector<int> cell0(1,(int)INTERP_KERNEL::NORM_POLYHED);
3743 std::vector<int> cell1(1,(int)INTERP_KERNEL::NORM_POLYHED);
3744 if(dott->getIJ(0,0)>0)
3746 cell0.insert(cell0.end(),cPtr+1,cPtr+ciPtr[1]);
3747 std::reverse_copy(cPtr+1,cPtr+ciPtr[1],std::inserter(cell1,cell1.end()));
3751 cell1.insert(cell1.end(),cPtr+1,cPtr+ciPtr[1]);
3752 std::reverse_copy(cPtr+1,cPtr+ciPtr[1],std::inserter(cell0,cell0.end()));
3754 for(int i=1;i<nbCellsRet;i++)
3756 if(dott2->getIJ(i,0)<0)
3758 if(ciPtr[i+1]-ciPtr[i]>=4)
3760 cell0.push_back(-1);
3761 cell0.insert(cell0.end(),cPtr+ciPtr[i]+1,cPtr+ciPtr[i+1]);
3766 if(ciPtr[i+1]-ciPtr[i]>=4)
3768 cell1.push_back(-1);
3769 cell1.insert(cell1.end(),cPtr+ciPtr[i]+1,cPtr+ciPtr[i+1]);
3773 conn2->insertAtTheEnd(cell0.begin(),cell0.end());
3774 conn2I->pushBackSilent(conn2->getNumberOfTuples());
3775 conn2->insertAtTheEnd(cell1.begin(),cell1.end());
3776 conn2I->pushBackSilent(conn2->getNumberOfTuples());
3777 ret2->setConnectivity(conn2,conn2I,true);
3778 ret2->checkConsistencyLight();
3779 ret2->orientCorrectlyPolyhedrons();
3784 * Finds cells whose bounding boxes intersect a given plane.
3785 * \param [in] origin - 3 components of a point defining location of the plane.
3786 * \param [in] vec - 3 components of a vector normal to the plane. Vector magnitude
3787 * must be greater than 1e-6.
3788 * \param [in] eps - half-thickness of the plane.
3789 * \return DataArrayInt * - a new instance of DataArrayInt holding ids of the found
3790 * cells. The caller is to delete this array using decrRef() as it is no more
3792 * \throw If the coordinates array is not set.
3793 * \throw If the nodal connectivity of cells is not defined.
3794 * \throw If \a this->getSpaceDimension() != 3.
3795 * \throw If magnitude of \a vec is less than 1e-6.
3796 * \sa buildSlice3D()
3798 DataArrayInt *MEDCouplingUMesh::getCellIdsCrossingPlane(const double *origin, const double *vec, double eps) const
3800 checkFullyDefined();
3801 if(getSpaceDimension()!=3)
3802 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSlice3D works on umeshes with spaceDim equal to 3 !");
3803 double normm=sqrt(vec[0]*vec[0]+vec[1]*vec[1]+vec[2]*vec[2]);
3805 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getCellIdsCrossingPlane : parameter 'vec' should have a norm2 greater than 1e-6 !");
3807 vec2[0]=vec[1]; vec2[1]=-vec[0]; vec2[2]=0.;//vec2 is the result of cross product of vec with (0,0,1)
3808 double angle=acos(vec[2]/normm);
3809 MCAuto<DataArrayInt> cellIds;
3813 MCAuto<DataArrayDouble> coo=_coords->deepCopy();
3814 double normm2(sqrt(vec2[0]*vec2[0]+vec2[1]*vec2[1]+vec2[2]*vec2[2]));
3815 if(normm2/normm>1e-6)
3816 DataArrayDouble::Rotate3DAlg(origin,vec2,angle,coo->getNumberOfTuples(),coo->getPointer(),coo->getPointer());
3817 MCAuto<MEDCouplingUMesh> mw=clone(false);//false -> shallow copy
3819 mw->getBoundingBox(bbox);
3820 bbox[4]=origin[2]-eps; bbox[5]=origin[2]+eps;
3821 cellIds=mw->getCellsInBoundingBox(bbox,eps);
3825 getBoundingBox(bbox);
3826 bbox[4]=origin[2]-eps; bbox[5]=origin[2]+eps;
3827 cellIds=getCellsInBoundingBox(bbox,eps);
3829 return cellIds.retn();
3833 * This method checks that \a this is a contiguous mesh. The user is expected to call this method on a mesh with meshdim==1.
3834 * If not an exception will thrown. If this is an empty mesh with no cell an exception will be thrown too.
3835 * No consideration of coordinate is done by this method.
3836 * A 1D mesh is said contiguous if : a cell i with nodal connectivity (k,p) the cell i+1 the nodal connectivity should be (p,m)
3837 * If not false is returned. In case that false is returned a call to MEDCoupling::MEDCouplingUMesh::mergeNodes could be useful.
3839 bool MEDCouplingUMesh::isContiguous1D() const
3841 if(getMeshDimension()!=1)
3842 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::isContiguous1D : this method has a sense only for 1D mesh !");
3843 int nbCells=getNumberOfCells();
3845 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::isContiguous1D : this method has a sense for non empty mesh !");
3846 const int *connI(_nodal_connec_index->begin()),*conn(_nodal_connec->begin());
3847 int ref=conn[connI[0]+2];
3848 for(int i=1;i<nbCells;i++)
3850 if(conn[connI[i]+1]!=ref)
3852 ref=conn[connI[i]+2];
3858 * This method is only callable on mesh with meshdim == 1 containing only SEG2 and spaceDim==3.
3859 * This method projects this on the 3D line defined by (pt,v). This methods first checks that all SEG2 are along v vector.
3860 * \param pt reference point of the line
3861 * \param v normalized director vector of the line
3862 * \param eps max precision before throwing an exception
3863 * \param res output of size this->getNumberOfCells
3865 void MEDCouplingUMesh::project1D(const double *pt, const double *v, double eps, double *res) const
3867 if(getMeshDimension()!=1)
3868 throw INTERP_KERNEL::Exception("Expected a umesh with meshDim == 1 for project1D !");
3869 if(_types.size()!=1 || *(_types.begin())!=INTERP_KERNEL::NORM_SEG2)
3870 throw INTERP_KERNEL::Exception("Expected a umesh with only NORM_SEG2 type of elements for project1D !");
3871 if(getSpaceDimension()!=3)
3872 throw INTERP_KERNEL::Exception("Expected a umesh with spaceDim==3 for project1D !");
3873 MCAuto<MEDCouplingFieldDouble> f=buildDirectionVectorField();
3874 const double *fPtr=f->getArray()->getConstPointer();
3876 for(std::size_t i=0;i<getNumberOfCells();i++)
3878 const double *tmp1=fPtr+3*i;
3879 tmp[0]=tmp1[1]*v[2]-tmp1[2]*v[1];
3880 tmp[1]=tmp1[2]*v[0]-tmp1[0]*v[2];
3881 tmp[2]=tmp1[0]*v[1]-tmp1[1]*v[0];
3882 double n1=INTERP_KERNEL::norm<3>(tmp);
3883 n1/=INTERP_KERNEL::norm<3>(tmp1);
3885 throw INTERP_KERNEL::Exception("UMesh::Projection 1D failed !");
3887 const double *coo=getCoords()->getConstPointer();
3888 for(int i=0;i<getNumberOfNodes();i++)
3890 std::transform(coo+i*3,coo+i*3+3,pt,tmp,std::minus<double>());
3891 std::transform(tmp,tmp+3,v,tmp,std::multiplies<double>());
3892 res[i]=std::accumulate(tmp,tmp+3,0.);
3897 * This method computes the distance from a point \a pt to \a this and the first \a cellId in \a this corresponding to the returned distance.
3898 * \a this is expected to be a mesh so that its space dimension is equal to its
3899 * mesh dimension + 1. Furthermore only mesh dimension 1 and 2 are supported for the moment.
3900 * Distance from \a ptBg to \a ptEnd is expected to be equal to the space dimension. \a this is also expected to be fully defined (connectivity and coordinates).
3902 * WARNING, if there is some orphan nodes in \a this (nodes not fetched by any cells in \a this ( see MEDCouplingUMesh::zipCoords ) ) these nodes will ** not ** been taken
3903 * into account in this method. Only cells and nodes lying on them are considered in the algorithm (even if one of these orphan nodes is closer than returned distance).
3904 * A user that needs to consider orphan nodes should invoke DataArrayDouble::minimalDistanceTo method on the coordinates array of \a this.
3906 * So this method is more accurate (so, more costly) than simply searching for the closest point in \a this.
3907 * If only this information is enough for you simply call \c getCoords()->distanceToTuple on \a this.
3909 * \param [in] ptBg the start pointer (included) of the coordinates of the point
3910 * \param [in] ptEnd the end pointer (not included) of the coordinates of the point
3911 * \param [out] cellId that corresponds to minimal distance. If the closer node is not linked to any cell in \a this -1 is returned.
3912 * \return the positive value of the distance.
3913 * \throw if distance from \a ptBg to \a ptEnd is not equal to the space dimension. An exception is also thrown if mesh dimension of \a this is not equal to space
3915 * \sa DataArrayDouble::distanceToTuple, MEDCouplingUMesh::distanceToPoints
3917 double MEDCouplingUMesh::distanceToPoint(const double *ptBg, const double *ptEnd, int& cellId) const
3919 int meshDim=getMeshDimension(),spaceDim=getSpaceDimension();
3920 if(meshDim!=spaceDim-1)
3921 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::distanceToPoint works only for spaceDim=meshDim+1 !");
3922 if(meshDim!=2 && meshDim!=1)
3923 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::distanceToPoint : only mesh dimension 2 and 1 are implemented !");
3924 checkFullyDefined();
3925 if((int)std::distance(ptBg,ptEnd)!=spaceDim)
3926 { std::ostringstream oss; oss << "MEDCouplingUMesh::distanceToPoint : input point has to have dimension equal to the space dimension of this (" << spaceDim << ") !"; throw INTERP_KERNEL::Exception(oss.str()); }
3927 DataArrayInt *ret1=0;
3928 MCAuto<DataArrayDouble> pts=DataArrayDouble::New(); pts->useArray(ptBg,false,C_DEALLOC,1,spaceDim);
3929 MCAuto<DataArrayDouble> ret0=distanceToPoints(pts,ret1);
3930 MCAuto<DataArrayInt> ret1Safe(ret1);
3931 cellId=*ret1Safe->begin();
3932 return *ret0->begin();
3936 * This method computes the distance from each point of points serie \a pts (stored in a DataArrayDouble in which each tuple represents a point)
3937 * to \a this and the first \a cellId in \a this corresponding to the returned distance.
3938 * WARNING, if there is some orphan nodes in \a this (nodes not fetched by any cells in \a this ( see MEDCouplingUMesh::zipCoords ) ) these nodes will ** not ** been taken
3939 * into account in this method. Only cells and nodes lying on them are considered in the algorithm (even if one of these orphan nodes is closer than returned distance).
3940 * A user that needs to consider orphan nodes should invoke DataArrayDouble::minimalDistanceTo method on the coordinates array of \a this.
3942 * \a this is expected to be a mesh so that its space dimension is equal to its
3943 * mesh dimension + 1. Furthermore only mesh dimension 1 and 2 are supported for the moment.
3944 * Number of components of \a pts is expected to be equal to the space dimension. \a this is also expected to be fully defined (connectivity and coordinates).
3946 * So this method is more accurate (so, more costly) than simply searching for each point in \a pts the closest point in \a this.
3947 * If only this information is enough for you simply call \c getCoords()->distanceToTuple on \a this.
3949 * \param [in] pts the list of points in which each tuple represents a point
3950 * \param [out] cellIds a newly allocated object that tells for each point in \a pts the first cell id in \a this that minimizes the distance.
3951 * \return a newly allocated object to be dealed by the caller that tells for each point in \a pts the distance to \a this.
3952 * \throw if number of components of \a pts is not equal to the space dimension.
3953 * \throw if mesh dimension of \a this is not equal to space dimension - 1.
3954 * \sa DataArrayDouble::distanceToTuple, MEDCouplingUMesh::distanceToPoint
3956 DataArrayDouble *MEDCouplingUMesh::distanceToPoints(const DataArrayDouble *pts, DataArrayInt *& cellIds) const
3959 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::distanceToPoints : input points pointer is NULL !");
3960 pts->checkAllocated();
3961 int meshDim=getMeshDimension(),spaceDim=getSpaceDimension();
3962 if(meshDim!=spaceDim-1)
3963 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::distanceToPoints works only for spaceDim=meshDim+1 !");
3964 if(meshDim!=2 && meshDim!=1)
3965 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::distanceToPoints : only mesh dimension 2 and 1 are implemented !");
3966 if((int)pts->getNumberOfComponents()!=spaceDim)
3968 std::ostringstream oss; oss << "MEDCouplingUMesh::distanceToPoints : input pts DataArrayDouble has " << pts->getNumberOfComponents() << " components whereas it should be equal to " << spaceDim << " (mesh spaceDimension) !";
3969 throw INTERP_KERNEL::Exception(oss.str());
3971 checkFullyDefined();
3972 int nbCells=getNumberOfCells();
3974 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::distanceToPoints : no cells in this !");
3975 int nbOfPts=pts->getNumberOfTuples();
3976 MCAuto<DataArrayDouble> ret0=DataArrayDouble::New(); ret0->alloc(nbOfPts,1);
3977 MCAuto<DataArrayInt> ret1=DataArrayInt::New(); ret1->alloc(nbOfPts,1);
3978 const int *nc=_nodal_connec->begin(),*ncI=_nodal_connec_index->begin(); const double *coords=_coords->begin();
3979 double *ret0Ptr=ret0->getPointer(); int *ret1Ptr=ret1->getPointer(); const double *ptsPtr=pts->begin();
3980 MCAuto<DataArrayDouble> bboxArr(getBoundingBoxForBBTree());
3981 const double *bbox(bboxArr->begin());
3986 BBTreeDst<3> myTree(bbox,0,0,nbCells);
3987 for(int i=0;i<nbOfPts;i++,ret0Ptr++,ret1Ptr++,ptsPtr+=3)
3989 double x=std::numeric_limits<double>::max();
3990 std::vector<int> elems;
3991 myTree.getMinDistanceOfMax(ptsPtr,x);
3992 myTree.getElemsWhoseMinDistanceToPtSmallerThan(ptsPtr,x,elems);
3993 DistanceToPoint3DSurfAlg(ptsPtr,&elems[0],&elems[0]+elems.size(),coords,nc,ncI,*ret0Ptr,*ret1Ptr);
3999 BBTreeDst<2> myTree(bbox,0,0,nbCells);
4000 for(int i=0;i<nbOfPts;i++,ret0Ptr++,ret1Ptr++,ptsPtr+=2)
4002 double x=std::numeric_limits<double>::max();
4003 std::vector<int> elems;
4004 myTree.getMinDistanceOfMax(ptsPtr,x);
4005 myTree.getElemsWhoseMinDistanceToPtSmallerThan(ptsPtr,x,elems);
4006 DistanceToPoint2DCurveAlg(ptsPtr,&elems[0],&elems[0]+elems.size(),coords,nc,ncI,*ret0Ptr,*ret1Ptr);
4011 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::distanceToPoints : only spacedim 2 and 3 supported !");
4013 cellIds=ret1.retn();
4022 * Finds cells in contact with a ball (i.e. a point with precision).
4023 * For speed reasons, the INTERP_KERNEL::NORM_QUAD4, INTERP_KERNEL::NORM_TRI6 and INTERP_KERNEL::NORM_QUAD8 cells are considered as convex cells to detect if a point is IN or OUT.
4024 * If it is not the case, please change their types to INTERP_KERNEL::NORM_POLYGON or INTERP_KERNEL::NORM_QPOLYG before invoking this method.
4026 * \warning This method is suitable if the caller intends to evaluate only one
4027 * point, for more points getCellsContainingPoints() is recommended as it is
4029 * \param [in] pos - array of coordinates of the ball central point.
4030 * \param [in] eps - ball radius.
4031 * \return int - a smallest id of cells being in contact with the ball, -1 in case
4032 * if there are no such cells.
4033 * \throw If the coordinates array is not set.
4034 * \throw If \a this->getMeshDimension() != \a this->getSpaceDimension().
4036 int MEDCouplingUMesh::getCellContainingPoint(const double *pos, double eps) const
4038 std::vector<int> elts;
4039 getCellsContainingPoint(pos,eps,elts);
4042 return elts.front();
4046 * Finds cells in contact with a ball (i.e. a point with precision).
4047 * For speed reasons, the INTERP_KERNEL::NORM_QUAD4, INTERP_KERNEL::NORM_TRI6 and INTERP_KERNEL::NORM_QUAD8 cells are considered as convex cells to detect if a point is IN or OUT.
4048 * If it is not the case, please change their types to INTERP_KERNEL::NORM_POLYGON or INTERP_KERNEL::NORM_QPOLYG before invoking this method.
4049 * \warning This method is suitable if the caller intends to evaluate only one
4050 * point, for more points getCellsContainingPoints() is recommended as it is
4052 * \param [in] pos - array of coordinates of the ball central point.
4053 * \param [in] eps - ball radius.
4054 * \param [out] elts - vector returning ids of the found cells. It is cleared
4055 * before inserting ids.
4056 * \throw If the coordinates array is not set.
4057 * \throw If \a this->getMeshDimension() != \a this->getSpaceDimension().
4059 * \if ENABLE_EXAMPLES
4060 * \ref cpp_mcumesh_getCellsContainingPoint "Here is a C++ example".<br>
4061 * \ref py_mcumesh_getCellsContainingPoint "Here is a Python example".
4064 void MEDCouplingUMesh::getCellsContainingPoint(const double *pos, double eps, std::vector<int>& elts) const
4066 MCAuto<DataArrayInt> eltsUg,eltsIndexUg;
4067 getCellsContainingPoints(pos,1,eps,eltsUg,eltsIndexUg);
4068 elts.clear(); elts.insert(elts.end(),eltsUg->begin(),eltsUg->end());
4071 void MEDCouplingUMesh::getCellsContainingPointsZeAlg(const double *pos, int nbOfPoints, double eps,
4072 MCAuto<DataArrayInt>& elts, MCAuto<DataArrayInt>& eltsIndex,
4073 std::function<bool(INTERP_KERNEL::NormalizedCellType,int)> sensibilityTo2DQuadraticLinearCellsFunc) const
4075 int spaceDim(getSpaceDimension()),mDim(getMeshDimension());
4080 const double *coords=_coords->getConstPointer();
4081 getCellsContainingPointsAlg<3>(coords,pos,nbOfPoints,eps,elts,eltsIndex,sensibilityTo2DQuadraticLinearCellsFunc);
4084 throw INTERP_KERNEL::Exception("For spaceDim==3 only meshDim==3 implemented for getelementscontainingpoints !");
4086 else if(spaceDim==2)
4090 const double *coords=_coords->getConstPointer();
4091 getCellsContainingPointsAlg<2>(coords,pos,nbOfPoints,eps,elts,eltsIndex,sensibilityTo2DQuadraticLinearCellsFunc);
4094 throw INTERP_KERNEL::Exception("For spaceDim==2 only meshDim==2 implemented for getelementscontainingpoints !");
4096 else if(spaceDim==1)
4100 const double *coords=_coords->getConstPointer();
4101 getCellsContainingPointsAlg<1>(coords,pos,nbOfPoints,eps,elts,eltsIndex,sensibilityTo2DQuadraticLinearCellsFunc);
4104 throw INTERP_KERNEL::Exception("For spaceDim==1 only meshDim==1 implemented for getelementscontainingpoints !");
4107 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getCellsContainingPoints : not managed for mdim not in [1,2,3] !");
4111 * Finds cells in contact with several balls (i.e. points with precision).
4112 * This method is an extension of getCellContainingPoint() and
4113 * getCellsContainingPoint() for the case of multiple points.
4114 * For speed reasons, the INTERP_KERNEL::NORM_QUAD4, INTERP_KERNEL::NORM_TRI6 and INTERP_KERNEL::NORM_QUAD8 cells are considered as convex cells to detect if a point is IN or OUT.
4115 * If it is not the case, please change their types to INTERP_KERNEL::NORM_POLYGON or INTERP_KERNEL::NORM_QPOLYG before invoking this method.
4116 * \param [in] pos - an array of coordinates of points in full interlace mode :
4117 * X0,Y0,Z0,X1,Y1,Z1,... Size of the array must be \a
4118 * this->getSpaceDimension() * \a nbOfPoints
4119 * \param [in] nbOfPoints - number of points to locate within \a this mesh.
4120 * \param [in] eps - radius of balls (i.e. the precision).
4121 * \param [out] elts - vector returning ids of found cells.
4122 * \param [out] eltsIndex - an array, of length \a nbOfPoints + 1,
4123 * dividing cell ids in \a elts into groups each referring to one
4124 * point. Its every element (except the last one) is an index pointing to the
4125 * first id of a group of cells. For example cells in contact with the *i*-th
4126 * point are described by following range of indices:
4127 * [ \a eltsIndex[ *i* ], \a eltsIndex[ *i*+1 ] ) and the cell ids are
4128 * \a elts[ \a eltsIndex[ *i* ]], \a elts[ \a eltsIndex[ *i* ] + 1 ], ...
4129 * Number of cells in contact with the *i*-th point is
4130 * \a eltsIndex[ *i*+1 ] - \a eltsIndex[ *i* ].
4131 * \throw If the coordinates array is not set.
4132 * \throw If \a this->getMeshDimension() != \a this->getSpaceDimension().
4134 * \if ENABLE_EXAMPLES
4135 * \ref cpp_mcumesh_getCellsContainingPoints "Here is a C++ example".<br>
4136 * \ref py_mcumesh_getCellsContainingPoints "Here is a Python example".
4139 void MEDCouplingUMesh::getCellsContainingPoints(const double *pos, int nbOfPoints, double eps,
4140 MCAuto<DataArrayInt>& elts, MCAuto<DataArrayInt>& eltsIndex) const
4142 auto yesImSensibleTo2DQuadraticLinearCellsFunc([](INTERP_KERNEL::NormalizedCellType ct, int mdim) { return INTERP_KERNEL::CellModel::GetCellModel(ct).isQuadratic() && mdim == 2; } );
4143 this->getCellsContainingPointsZeAlg(pos,nbOfPoints,eps,elts,eltsIndex,yesImSensibleTo2DQuadraticLinearCellsFunc);
4147 * Behaves like MEDCouplingMesh::getCellsContainingPoints for cells in \a this that are linear.
4148 * For quadratic cells in \a this, this method behaves by just considering linear part of cells.
4149 * This method is here only for backward compatibility (interpolation GaussPoints to GaussPoints).
4151 * \sa MEDCouplingUMesh::getCellsContainingPoints, MEDCouplingRemapper::prepareNotInterpKernelOnlyGaussGauss
4153 void MEDCouplingUMesh::getCellsContainingPointsLinearPartOnlyOnNonDynType(const double *pos, int nbOfPoints, double eps, MCAuto<DataArrayInt>& elts, MCAuto<DataArrayInt>& eltsIndex) const
4155 auto noImNotSensibleTo2DQuadraticLinearCellsFunc([](INTERP_KERNEL::NormalizedCellType,int) { return false; } );
4156 this->getCellsContainingPointsZeAlg(pos,nbOfPoints,eps,elts,eltsIndex,noImNotSensibleTo2DQuadraticLinearCellsFunc);
4160 * Finds butterfly cells in \a this mesh. A 2D cell is considered to be butterfly if at
4161 * least two its edges intersect each other anywhere except their extremities. An
4162 * INTERP_KERNEL::NORM_NORI3 cell can \b not be butterfly.
4163 * \param [in,out] cells - a vector returning ids of the found cells. It is not
4164 * cleared before filling in.
4165 * \param [in] eps - precision.
4166 * \throw If \a this->getMeshDimension() != 2.
4167 * \throw If \a this->getSpaceDimension() != 2 && \a this->getSpaceDimension() != 3.
4169 void MEDCouplingUMesh::checkButterflyCells(std::vector<int>& cells, double eps) const
4171 const char msg[]="Butterfly detection work only for 2D cells with spaceDim==2 or 3!";
4172 if(getMeshDimension()!=2)
4173 throw INTERP_KERNEL::Exception(msg);
4174 int spaceDim=getSpaceDimension();
4175 if(spaceDim!=2 && spaceDim!=3)
4176 throw INTERP_KERNEL::Exception(msg);
4177 const int *conn=_nodal_connec->getConstPointer();
4178 const int *connI=_nodal_connec_index->getConstPointer();
4179 int nbOfCells=getNumberOfCells();
4180 std::vector<double> cell2DinS2;
4181 for(int i=0;i<nbOfCells;i++)
4183 int offset=connI[i];
4184 int nbOfNodesForCell=connI[i+1]-offset-1;
4185 if(nbOfNodesForCell<=3)
4187 bool isQuad=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[offset]).isQuadratic();
4188 project2DCellOnXY(conn+offset+1,conn+connI[i+1],cell2DinS2);
4189 if(isButterfly2DCell(cell2DinS2,isQuad,eps))
4196 * This method is typically requested to unbutterfly 2D linear cells in \b this.
4198 * This method expects that space dimension is equal to 2 and mesh dimension is equal to 2 too. If it is not the case an INTERP_KERNEL::Exception will be thrown.
4199 * This method works only for linear 2D cells. If there is any of non linear cells (INTERP_KERNEL::NORM_QUAD8 for example) an INTERP_KERNEL::Exception will be thrown too.
4201 * For each 2D linear cell in \b this, this method builds the convex envelop (or the convex hull) of the current cell.
4202 * This convex envelop is computed using Jarvis march algorithm.
4203 * The coordinates and the number of cells of \b this remain unchanged on invocation of this method.
4204 * Only connectivity of some cells could be modified if those cells were not representing a convex envelop. If a cell already equals its convex envelop (regardless orientation)
4205 * its connectivity will remain unchanged. If the computation leads to a modification of nodal connectivity of a cell its geometric type will be modified to INTERP_KERNEL::NORM_POLYGON.
4207 * \return a newly allocated array containing cellIds that have been modified if any. If no cells have been impacted by this method NULL is returned.
4208 * \sa MEDCouplingUMesh::colinearize2D
4210 DataArrayInt *MEDCouplingUMesh::convexEnvelop2D()
4212 if(getMeshDimension()!=2 || getSpaceDimension()!=2)
4213 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convexEnvelop2D works only for meshDim=2 and spaceDim=2 !");
4214 checkFullyDefined();
4215 const double *coords=getCoords()->getConstPointer();
4216 int nbOfCells=getNumberOfCells();
4217 MCAuto<DataArrayInt> nodalConnecIndexOut=DataArrayInt::New();
4218 nodalConnecIndexOut->alloc(nbOfCells+1,1);
4219 MCAuto<DataArrayInt> nodalConnecOut(DataArrayInt::New());
4220 int *workIndexOut=nodalConnecIndexOut->getPointer();
4222 const int *nodalConnecIn=_nodal_connec->getConstPointer();
4223 const int *nodalConnecIndexIn=_nodal_connec_index->getConstPointer();
4224 std::set<INTERP_KERNEL::NormalizedCellType> types;
4225 MCAuto<DataArrayInt> isChanged(DataArrayInt::New());
4226 isChanged->alloc(0,1);
4227 for(int i=0;i<nbOfCells;i++,workIndexOut++)
4229 int pos=nodalConnecOut->getNumberOfTuples();
4230 if(BuildConvexEnvelopOf2DCellJarvis(coords,nodalConnecIn+nodalConnecIndexIn[i],nodalConnecIn+nodalConnecIndexIn[i+1],nodalConnecOut))
4231 isChanged->pushBackSilent(i);
4232 types.insert((INTERP_KERNEL::NormalizedCellType)nodalConnecOut->getIJ(pos,0));
4233 workIndexOut[1]=nodalConnecOut->getNumberOfTuples();
4235 if(isChanged->empty())
4237 setConnectivity(nodalConnecOut,nodalConnecIndexOut,false);
4239 return isChanged.retn();
4243 * This method is \b NOT const because it can modify \a this.
4244 * \a this is expected to be an unstructured mesh with meshDim==2 and spaceDim==3. If not an exception will be thrown.
4245 * \param mesh1D is an unstructured mesh with MeshDim==1 and spaceDim==3. If not an exception will be thrown.
4246 * \param policy specifies the type of extrusion chosen:
4247 * - \b 0 for translation only (most simple): the cells of the 1D mesh represent the vectors along which the 2D mesh
4248 * will be repeated to build each level
4249 * - \b 1 for translation and rotation: the translation is done as above. For each level, an arc of circle is fitted on
4250 * the 3 preceding points of the 1D mesh. The center of the arc is the center of rotation for each level, the rotation is done
4251 * along an axis normal to the plane containing the arc, and finally the angle of rotation is defined by the first two points on the
4253 * \return an unstructured mesh with meshDim==3 and spaceDim==3. The returned mesh has the same coords than \a this.
4255 MEDCouplingUMesh *MEDCouplingUMesh::buildExtrudedMesh(const MEDCouplingUMesh *mesh1D, int policy)
4257 checkFullyDefined();
4258 mesh1D->checkFullyDefined();
4259 if(!mesh1D->isContiguous1D())
4260 throw INTERP_KERNEL::Exception("buildExtrudedMesh : 1D mesh passed in parameter is not contiguous !");
4261 if(getSpaceDimension()!=mesh1D->getSpaceDimension())
4262 throw INTERP_KERNEL::Exception("Invalid call to buildExtrudedMesh this and mesh1D must have same space dimension !");
4263 if((getMeshDimension()!=2 || getSpaceDimension()!=3) && (getMeshDimension()!=1 || getSpaceDimension()!=2))
4264 throw INTERP_KERNEL::Exception("Invalid 'this' for buildExtrudedMesh method : must be (meshDim==2 and spaceDim==3) or (meshDim==1 and spaceDim==2) !");
4265 if(mesh1D->getMeshDimension()!=1)
4266 throw INTERP_KERNEL::Exception("Invalid 'mesh1D' for buildExtrudedMesh method : must be meshDim==1 !");
4268 if(isPresenceOfQuadratic())
4270 if(mesh1D->isFullyQuadratic())
4273 throw INTERP_KERNEL::Exception("Invalid 2D mesh and 1D mesh because 2D mesh has quadratic cells and 1D is not fully quadratic !");
4275 int oldNbOfNodes(getNumberOfNodes());
4276 MCAuto<DataArrayDouble> newCoords;
4281 newCoords=fillExtCoordsUsingTranslation(mesh1D,isQuad);
4286 newCoords=fillExtCoordsUsingTranslAndAutoRotation(mesh1D,isQuad);
4290 throw INTERP_KERNEL::Exception("Not implemented extrusion policy : must be in (0) !");
4292 setCoords(newCoords);
4293 MCAuto<MEDCouplingUMesh> ret(buildExtrudedMeshFromThisLowLev(oldNbOfNodes,isQuad));
4300 * Checks if \a this mesh is constituted by only quadratic cells.
4301 * \return bool - \c true if there are only quadratic cells in \a this mesh.
4302 * \throw If the coordinates array is not set.
4303 * \throw If the nodal connectivity of cells is not defined.
4305 bool MEDCouplingUMesh::isFullyQuadratic() const
4307 checkFullyDefined();
4309 int nbOfCells=getNumberOfCells();
4310 for(int i=0;i<nbOfCells && ret;i++)
4312 INTERP_KERNEL::NormalizedCellType type=getTypeOfCell(i);
4313 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(type);
4314 ret=cm.isQuadratic();
4320 * Checks if \a this mesh includes any quadratic cell.
4321 * \return bool - \c true if there is at least one quadratic cells in \a this mesh.
4322 * \throw If the coordinates array is not set.
4323 * \throw If the nodal connectivity of cells is not defined.
4325 bool MEDCouplingUMesh::isPresenceOfQuadratic() const
4327 checkFullyDefined();
4329 int nbOfCells=getNumberOfCells();
4330 for(int i=0;i<nbOfCells && !ret;i++)
4332 INTERP_KERNEL::NormalizedCellType type=getTypeOfCell(i);
4333 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(type);
4334 ret=cm.isQuadratic();
4340 * Converts all quadratic cells to linear ones. If there are no quadratic cells in \a
4341 * this mesh, it remains unchanged.
4342 * \throw If the coordinates array is not set.
4343 * \throw If the nodal connectivity of cells is not defined.
4345 void MEDCouplingUMesh::convertQuadraticCellsToLinear()
4347 checkFullyDefined();
4348 int nbOfCells(getNumberOfCells());
4350 const int *iciptr=_nodal_connec_index->begin();
4351 for(int i=0;i<nbOfCells;i++)
4353 INTERP_KERNEL::NormalizedCellType type=getTypeOfCell(i);
4354 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(type);
4355 if(cm.isQuadratic())
4357 INTERP_KERNEL::NormalizedCellType typel=cm.getLinearType();
4358 const INTERP_KERNEL::CellModel& cml=INTERP_KERNEL::CellModel::GetCellModel(typel);
4359 if(!cml.isDynamic())
4360 delta+=cm.getNumberOfNodes()-cml.getNumberOfNodes();
4362 delta+=(iciptr[i+1]-iciptr[i]-1)/2;
4367 MCAuto<DataArrayInt> newConn(DataArrayInt::New()),newConnI(DataArrayInt::New());
4368 const int *icptr(_nodal_connec->begin());
4369 newConn->alloc(getNodalConnectivityArrayLen()-delta,1);
4370 newConnI->alloc(nbOfCells+1,1);
4371 int *ocptr(newConn->getPointer()),*ociptr(newConnI->getPointer());
4374 for(int i=0;i<nbOfCells;i++,ociptr++)
4376 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)icptr[iciptr[i]];
4377 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(type);
4378 if(!cm.isQuadratic())
4380 _types.insert(type);
4381 ocptr=std::copy(icptr+iciptr[i],icptr+iciptr[i+1],ocptr);
4382 ociptr[1]=ociptr[0]+iciptr[i+1]-iciptr[i];
4386 INTERP_KERNEL::NormalizedCellType typel=cm.getLinearType();
4387 _types.insert(typel);
4388 const INTERP_KERNEL::CellModel& cml=INTERP_KERNEL::CellModel::GetCellModel(typel);
4389 int newNbOfNodes=cml.getNumberOfNodes();
4391 newNbOfNodes=(iciptr[i+1]-iciptr[i]-1)/2;
4392 *ocptr++=(int)typel;
4393 ocptr=std::copy(icptr+iciptr[i]+1,icptr+iciptr[i]+newNbOfNodes+1,ocptr);
4394 ociptr[1]=ociptr[0]+newNbOfNodes+1;
4397 setConnectivity(newConn,newConnI,false);
4401 * This method converts all linear cell in \a this to quadratic one.
4402 * Contrary to MEDCouplingUMesh::convertQuadraticCellsToLinear method, here it is needed to specify the target
4403 * type of cells expected. For example INTERP_KERNEL::NORM_TRI3 can be converted to INTERP_KERNEL::NORM_TRI6 if \a conversionType is equal to 0 (the default)
4404 * or to INTERP_KERNEL::NORM_TRI7 if \a conversionType is equal to 1. All non linear cells and polyhedron in \a this are let untouched.
4405 * Contrary to MEDCouplingUMesh::convertQuadraticCellsToLinear method, the coordinates in \a this can be become bigger. All created nodes will be put at the
4406 * end of the existing coordinates.
4408 * \param [in] conversionType specifies the type of conversion expected. Only 0 (default) and 1 are supported presently. 0 those that creates the 'most' simple
4409 * corresponding quadratic cells. 1 is those creating the 'most' complex.
4410 * \return a newly created DataArrayInt instance that the caller should deal with containing cell ids of converted cells.
4412 * \throw if \a this is not fully defined. It throws too if \a conversionType is not in [0,1].
4414 * \sa MEDCouplingUMesh::convertQuadraticCellsToLinear
4416 DataArrayInt *MEDCouplingUMesh::convertLinearCellsToQuadratic(int conversionType)
4418 DataArrayInt *conn=0,*connI=0;
4419 DataArrayDouble *coords=0;
4420 std::set<INTERP_KERNEL::NormalizedCellType> types;
4421 checkFullyDefined();
4422 MCAuto<DataArrayInt> ret,connSafe,connISafe;
4423 MCAuto<DataArrayDouble> coordsSafe;
4424 int meshDim=getMeshDimension();
4425 switch(conversionType)
4431 ret=convertLinearCellsToQuadratic1D0(conn,connI,coords,types);
4432 connSafe=conn; connISafe=connI; coordsSafe=coords;
4435 ret=convertLinearCellsToQuadratic2D0(conn,connI,coords,types);
4436 connSafe=conn; connISafe=connI; coordsSafe=coords;
4439 ret=convertLinearCellsToQuadratic3D0(conn,connI,coords,types);
4440 connSafe=conn; connISafe=connI; coordsSafe=coords;
4443 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertLinearCellsToQuadratic : conversion of type 0 mesh dimensions available are [1,2,3] !");
4451 ret=convertLinearCellsToQuadratic1D0(conn,connI,coords,types);//it is not a bug. In 1D policy 0 and 1 are equals
4452 connSafe=conn; connISafe=connI; coordsSafe=coords;
4455 ret=convertLinearCellsToQuadratic2D1(conn,connI,coords,types);
4456 connSafe=conn; connISafe=connI; coordsSafe=coords;
4459 ret=convertLinearCellsToQuadratic3D1(conn,connI,coords,types);
4460 connSafe=conn; connISafe=connI; coordsSafe=coords;
4463 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertLinearCellsToQuadratic : conversion of type 1 mesh dimensions available are [1,2,3] !");
4468 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertLinearCellsToQuadratic : conversion type available are 0 (default, the simplest) and 1 (the most complex) !");
4470 setConnectivity(connSafe,connISafe,false);
4472 setCoords(coordsSafe);
4477 * Tessellates \a this 2D mesh by dividing not straight edges of quadratic faces,
4478 * so that the number of cells remains the same. Quadratic faces are converted to
4479 * polygons. This method works only for 2D meshes in
4480 * 2D space. If no cells are quadratic (INTERP_KERNEL::NORM_QUAD8,
4481 * INTERP_KERNEL::NORM_TRI6, INTERP_KERNEL::NORM_QPOLYG ), \a this mesh remains unchanged.
4482 * \warning This method can lead to a huge amount of nodes if \a eps is very low.
4483 * \param [in] eps - specifies the maximal angle (in radians) between 2 sub-edges of
4484 * a polylinized edge constituting the input polygon.
4485 * \throw If the coordinates array is not set.
4486 * \throw If the nodal connectivity of cells is not defined.
4487 * \throw If \a this->getMeshDimension() != 2.
4488 * \throw If \a this->getSpaceDimension() != 2.
4490 void MEDCouplingUMesh::tessellate2D(double eps)
4492 int meshDim(getMeshDimension()),spaceDim(getSpaceDimension());
4494 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::tessellate2D : works only with space dimension equal to 2 !");
4498 return tessellate2DCurveInternal(eps);
4500 return tessellate2DInternal(eps);
4502 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::tessellate2D : mesh dimension must be in [1,2] !");
4506 * Tessellates \a this 1D mesh in 2D space by dividing not straight quadratic edges.
4507 * \warning This method can lead to a huge amount of nodes if \a eps is very low.
4508 * \param [in] eps - specifies the maximal angle (in radian) between 2 sub-edges of
4509 * a sub-divided edge.
4510 * \throw If the coordinates array is not set.
4511 * \throw If the nodal connectivity of cells is not defined.
4512 * \throw If \a this->getMeshDimension() != 1.
4513 * \throw If \a this->getSpaceDimension() != 2.
4518 * This method only works if \a this has spaceDimension equal to 2 and meshDimension also equal to 2.
4519 * This method allows to modify connectivity of cells in \a this that shares some edges in \a edgeIdsToBeSplit.
4520 * The nodes to be added in those 2D cells are defined by the pair of \a nodeIdsToAdd and \a nodeIdsIndexToAdd.
4521 * Length of \a nodeIdsIndexToAdd is expected to equal to length of \a edgeIdsToBeSplit + 1.
4522 * The node ids in \a nodeIdsToAdd should be valid. Those nodes have to be sorted exactly following exactly the direction of the edge.
4523 * This method can be seen as the opposite method of colinearize2D.
4524 * This method can be lead to create some new nodes if quadratic polygon cells have to be split. In this case the added nodes will be put at the end
4525 * to avoid to modify the numbering of existing nodes.
4527 * \param [in] nodeIdsToAdd - the list of node ids to be added (\a nodeIdsIndexToAdd array allows to walk on this array)
4528 * \param [in] nodeIdsIndexToAdd - the entry point of \a nodeIdsToAdd to point to the corresponding nodes to be added.
4529 * \param [in] mesh1Desc - 1st output of buildDescendingConnectivity2 on \a this.
4530 * \param [in] desc - 2nd output of buildDescendingConnectivity2 on \a this.
4531 * \param [in] descI - 3rd output of buildDescendingConnectivity2 on \a this.
4532 * \param [in] revDesc - 4th output of buildDescendingConnectivity2 on \a this.
4533 * \param [in] revDescI - 5th output of buildDescendingConnectivity2 on \a this.
4535 * \sa buildDescendingConnectivity2
4537 void MEDCouplingUMesh::splitSomeEdgesOf2DMesh(const DataArrayInt *nodeIdsToAdd, const DataArrayInt *nodeIdsIndexToAdd, const DataArrayInt *edgeIdsToBeSplit,
4538 const MEDCouplingUMesh *mesh1Desc, const DataArrayInt *desc, const DataArrayInt *descI, const DataArrayInt *revDesc, const DataArrayInt *revDescI)
4540 if(!nodeIdsToAdd || !nodeIdsIndexToAdd || !edgeIdsToBeSplit || !mesh1Desc || !desc || !descI || !revDesc || !revDescI)
4541 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::splitSomeEdgesOf2DMesh : input pointers must be not NULL !");
4542 nodeIdsToAdd->checkAllocated(); nodeIdsIndexToAdd->checkAllocated(); edgeIdsToBeSplit->checkAllocated(); desc->checkAllocated(); descI->checkAllocated(); revDesc->checkAllocated(); revDescI->checkAllocated();
4543 if(getSpaceDimension()!=2 || getMeshDimension()!=2)
4544 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::splitSomeEdgesOf2DMesh : this must have spacedim=meshdim=2 !");
4545 if(mesh1Desc->getSpaceDimension()!=2 || mesh1Desc->getMeshDimension()!=1)
4546 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::splitSomeEdgesOf2DMesh : mesh1Desc must be the explosion of this with spaceDim=2 and meshDim = 1 !");
4547 //DataArrayInt *out0(0),*outi0(0);
4548 //MEDCouplingUMesh::ExtractFromIndexedArrays(idsInDesc2DToBeRefined->begin(),idsInDesc2DToBeRefined->end(),dd3,dd4,out0,outi0);
4549 //MCAuto<DataArrayInt> out0s(out0),outi0s(outi0);
4550 //out0s=out0s->buildUnique(); out0s->sort(true);
4556 * Divides every cell of \a this mesh into simplices (triangles in 2D and tetrahedra in 3D).
4557 * In addition, returns an array mapping new cells to old ones. <br>
4558 * This method typically increases the number of cells in \a this mesh
4559 * but the number of nodes remains \b unchanged.
4560 * That's why the 3D splitting policies
4561 * INTERP_KERNEL::GENERAL_24 and INTERP_KERNEL::GENERAL_48 are not available here.
4562 * \param [in] policy - specifies a pattern used for splitting.
4563 * The semantic of \a policy is:
4564 * - 0 - to split QUAD4 by cutting it along 0-2 diagonal (for 2D mesh only).
4565 * - 1 - to split QUAD4 by cutting it along 1-3 diagonal (for 2D mesh only).
4566 * - INTERP_KERNEL::PLANAR_FACE_5 - to split HEXA8 into 5 TETRA4 (for 3D mesh only - see INTERP_KERNEL::SplittingPolicy for an image).
4567 * - INTERP_KERNEL::PLANAR_FACE_6 - to split HEXA8 into 6 TETRA4 (for 3D mesh only - see INTERP_KERNEL::SplittingPolicy for an image).
4570 * \return DataArrayInt * - a new instance of DataArrayInt holding, for each new cell,
4571 * an id of old cell producing it. The caller is to delete this array using
4572 * decrRef() as it is no more needed.
4574 * \throw If \a policy is 0 or 1 and \a this->getMeshDimension() != 2.
4575 * \throw If \a policy is INTERP_KERNEL::PLANAR_FACE_5 or INTERP_KERNEL::PLANAR_FACE_6
4576 * and \a this->getMeshDimension() != 3.
4577 * \throw If \a policy is not one of the four discussed above.
4578 * \throw If the nodal connectivity of cells is not defined.
4579 * \sa MEDCouplingUMesh::tetrahedrize, MEDCoupling1SGTUMesh::sortHexa8EachOther
4581 DataArrayInt *MEDCouplingUMesh::simplexize(int policy)
4586 return simplexizePol0();
4588 return simplexizePol1();
4589 case (int) INTERP_KERNEL::PLANAR_FACE_5:
4590 return simplexizePlanarFace5();
4591 case (int) INTERP_KERNEL::PLANAR_FACE_6:
4592 return simplexizePlanarFace6();
4594 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::simplexize : unrecognized policy ! Must be :\n - 0 or 1 (only available for meshdim=2) \n - PLANAR_FACE_5, PLANAR_FACE_6 (only for meshdim=3)");
4599 * Checks if \a this mesh is constituted by simplex cells only. Simplex cells are:
4600 * - 1D: INTERP_KERNEL::NORM_SEG2
4601 * - 2D: INTERP_KERNEL::NORM_TRI3
4602 * - 3D: INTERP_KERNEL::NORM_TETRA4.
4604 * This method is useful for users that need to use P1 field services as
4605 * MEDCouplingFieldDouble::getValueOn(), MEDCouplingField::buildMeasureField() etc.
4606 * All these methods need mesh support containing only simplex cells.
4607 * \return bool - \c true if there are only simplex cells in \a this mesh.
4608 * \throw If the coordinates array is not set.
4609 * \throw If the nodal connectivity of cells is not defined.
4610 * \throw If \a this->getMeshDimension() < 1.
4612 bool MEDCouplingUMesh::areOnlySimplexCells() const
4614 checkFullyDefined();
4615 int mdim=getMeshDimension();
4616 if(mdim<1 || mdim>3)
4617 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::areOnlySimplexCells : only available with meshes having a meshdim 1, 2 or 3 !");
4618 int nbCells=getNumberOfCells();
4619 const int *conn=_nodal_connec->begin();
4620 const int *connI=_nodal_connec_index->begin();
4621 for(int i=0;i<nbCells;i++)
4623 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[connI[i]]);
4633 * Converts degenerated 2D or 3D linear cells of \a this mesh into cells of simpler
4634 * type. For example an INTERP_KERNEL::NORM_QUAD4 cell having only three unique nodes in
4635 * its connectivity is transformed into an INTERP_KERNEL::NORM_TRI3 cell.
4636 * Quadratic cells in 2D are also handled. In those cells edges where start=end=midpoint are removed.
4637 * This method does \b not perform geometrical checks and checks only nodal connectivity of cells,
4638 * so it can be useful to call mergeNodes() before calling this method.
4639 * \throw If \a this->getMeshDimension() <= 1.
4640 * \throw If the coordinates array is not set.
4641 * \throw If the nodal connectivity of cells is not defined.
4643 void MEDCouplingUMesh::convertDegeneratedCells()
4645 checkFullyDefined();
4646 if(getMeshDimension()<=1)
4647 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertDegeneratedCells works on umeshes with meshdim equals to 2 or 3 !");
4648 int nbOfCells=getNumberOfCells();
4651 int initMeshLgth=getNodalConnectivityArrayLen();
4652 int *conn=_nodal_connec->getPointer();
4653 int *index=_nodal_connec_index->getPointer();
4657 for(int i=0;i<nbOfCells;i++)
4659 lgthOfCurCell=index[i+1]-posOfCurCell;
4660 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)conn[posOfCurCell];
4662 INTERP_KERNEL::NormalizedCellType newType=INTERP_KERNEL::CellSimplify::simplifyDegeneratedCell(type,conn+posOfCurCell+1,lgthOfCurCell-1,
4663 conn+newPos+1,newLgth);
4664 conn[newPos]=newType;
4666 posOfCurCell=index[i+1];
4669 if(newPos!=initMeshLgth)
4670 _nodal_connec->reAlloc(newPos);
4675 * Same as MEDCouplingUMesh::convertDegeneratedCells() plus deletion of the flat cells.
4676 * A cell is flat in the following cases:
4677 * - for a linear cell, all points in the connectivity are equal
4678 * - for a quadratic cell, either the above, or a quadratic polygon with two (linear) points and two
4679 * identical quadratic points
4680 * \return a new instance of DataArrayInt holding ids of removed cells. The caller is to delete
4681 * this array using decrRef() as it is no more needed.
4683 DataArrayInt *MEDCouplingUMesh::convertDegeneratedCellsAndRemoveFlatOnes()
4685 checkFullyDefined();
4686 if(getMeshDimension()<=1)
4687 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertDegeneratedCells works on umeshes with meshdim equals to 2 or 3 !");
4688 int nbOfCells=getNumberOfCells();
4689 MCAuto<DataArrayInt> ret(DataArrayInt::New()); ret->alloc(0,1);
4692 int initMeshLgth=getNodalConnectivityArrayLen();
4693 int *conn=_nodal_connec->getPointer();
4694 int *index=_nodal_connec_index->getPointer();
4697 int lgthOfCurCell, nbDelCells(0);
4698 for(int i=0;i<nbOfCells;i++)
4700 lgthOfCurCell=index[i+1]-posOfCurCell;
4701 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)conn[posOfCurCell];
4703 INTERP_KERNEL::NormalizedCellType newType=INTERP_KERNEL::CellSimplify::simplifyDegeneratedCell(type,conn+posOfCurCell+1,lgthOfCurCell-1,
4704 conn+newPos+1,newLgth);
4705 // Shall we delete the cell if it is completely degenerated:
4706 bool delCell=INTERP_KERNEL::CellSimplify::isFlatCell(conn, newPos, newLgth, newType);
4710 ret->pushBackSilent(i);
4712 else //if the cell is to be deleted, simply stay at the same place
4714 conn[newPos]=newType;
4717 posOfCurCell=index[i+1];
4718 index[i+1-nbDelCells]=newPos;
4720 if(newPos!=initMeshLgth)
4721 _nodal_connec->reAlloc(newPos);
4722 const int nCellDel=ret->getNumberOfTuples();
4724 _nodal_connec_index->reAlloc(nbOfCells-nCellDel+1);
4730 * This method remove null 1D cells from \a this. A 1D cell is considered null if start node is equal to end node.
4731 * Only connectivity is considered here.
4733 bool MEDCouplingUMesh::removeDegenerated1DCells()
4735 checkConnectivityFullyDefined();
4736 if(getMeshDimension()!=1)
4737 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::removeDegenerated1DCells works on umeshes with meshdim equals to 1 !");
4738 std::size_t nbCells(getNumberOfCells()),newSize(0),newSize2(0);
4739 const int *conn(getNodalConnectivity()->begin()),*conni(getNodalConnectivityIndex()->begin());
4741 for(std::size_t i=0;i<nbCells;i++)
4743 INTERP_KERNEL::NormalizedCellType ct((INTERP_KERNEL::NormalizedCellType)conn[conni[i]]);
4744 if(ct==INTERP_KERNEL::NORM_SEG2 || ct==INTERP_KERNEL::NORM_SEG3)
4746 if(conn[conni[i]+1]!=conn[conni[i]+2])
4749 newSize2+=conni[i+1]-conni[i];
4754 std::ostringstream oss; oss << "MEDCouplingUMesh::removeDegenerated1DCells : cell #" << i << " in this is not of type SEG2/SEG3 !";
4755 throw INTERP_KERNEL::Exception(oss.str());
4759 if(newSize==nbCells)//no cells has been removed -> do nothing
4761 MCAuto<DataArrayInt> newConn(DataArrayInt::New()),newConnI(DataArrayInt::New()); newConnI->alloc(newSize+1,1); newConn->alloc(newSize2,1);
4762 int *newConnPtr(newConn->getPointer()),*newConnIPtr(newConnI->getPointer()); newConnIPtr[0]=0;
4763 for(std::size_t i=0;i<nbCells;i++)
4765 if(conn[conni[i]+1]!=conn[conni[i]+2])
4767 newConnIPtr[1]=newConnIPtr[0]+conni[i+1]-conni[i];
4768 newConnPtr=std::copy(conn+conni[i],conn+conni[i+1],newConnPtr);
4772 setConnectivity(newConn,newConnI,true);
4777 * Finds incorrectly oriented cells of this 2D mesh in 3D space.
4778 * A cell is considered to be oriented correctly if an angle between its
4779 * normal vector and a given vector is less than \c PI / \c 2.
4780 * \param [in] vec - 3 components of the vector specifying the correct orientation of
4782 * \param [in] polyOnly - if \c true, only polygons are checked, else, all cells are
4784 * \param [in,out] cells - a vector returning ids of incorrectly oriented cells. It
4785 * is not cleared before filling in.
4786 * \throw If \a this->getMeshDimension() != 2.
4787 * \throw If \a this->getSpaceDimension() != 3.
4789 * \if ENABLE_EXAMPLES
4790 * \ref cpp_mcumesh_are2DCellsNotCorrectlyOriented "Here is a C++ example".<br>
4791 * \ref py_mcumesh_are2DCellsNotCorrectlyOriented "Here is a Python example".
4794 void MEDCouplingUMesh::are2DCellsNotCorrectlyOriented(const double *vec, bool polyOnly, std::vector<int>& cells) const
4796 if(getMeshDimension()!=2 || getSpaceDimension()!=3)
4797 throw INTERP_KERNEL::Exception("Invalid mesh to apply are2DCellsNotCorrectlyOriented on it : must be meshDim==2 and spaceDim==3 !");
4798 int nbOfCells=getNumberOfCells();
4799 const int *conn=_nodal_connec->begin();
4800 const int *connI=_nodal_connec_index->begin();
4801 const double *coordsPtr=_coords->begin();
4802 for(int i=0;i<nbOfCells;i++)
4804 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)conn[connI[i]];
4805 if(!polyOnly || (type==INTERP_KERNEL::NORM_POLYGON || type==INTERP_KERNEL::NORM_QPOLYG))
4807 bool isQuadratic=INTERP_KERNEL::CellModel::GetCellModel(type).isQuadratic();
4808 if(!IsPolygonWellOriented(isQuadratic,vec,conn+connI[i]+1,conn+connI[i+1],coordsPtr))
4815 * Reverse connectivity of 2D cells whose orientation is not correct. A cell is
4816 * considered to be oriented correctly if an angle between its normal vector and a
4817 * given vector is less than \c PI / \c 2.
4818 * \param [in] vec - 3 components of the vector specifying the correct orientation of
4820 * \param [in] polyOnly - if \c true, only polygons are checked, else, all cells are
4822 * \throw If \a this->getMeshDimension() != 2.
4823 * \throw If \a this->getSpaceDimension() != 3.
4825 * \if ENABLE_EXAMPLES
4826 * \ref cpp_mcumesh_are2DCellsNotCorrectlyOriented "Here is a C++ example".<br>
4827 * \ref py_mcumesh_are2DCellsNotCorrectlyOriented "Here is a Python example".
4830 * \sa changeOrientationOfCells
4832 void MEDCouplingUMesh::orientCorrectly2DCells(const double *vec, bool polyOnly)
4834 if(getMeshDimension()!=2 || getSpaceDimension()!=3)
4835 throw INTERP_KERNEL::Exception("Invalid mesh to apply orientCorrectly2DCells on it : must be meshDim==2 and spaceDim==3 !");
4836 int nbOfCells(getNumberOfCells()),*conn(_nodal_connec->getPointer());
4837 const int *connI(_nodal_connec_index->begin());
4838 const double *coordsPtr(_coords->begin());
4839 bool isModified(false);
4840 for(int i=0;i<nbOfCells;i++)
4842 INTERP_KERNEL::NormalizedCellType type((INTERP_KERNEL::NormalizedCellType)conn[connI[i]]);
4843 if(!polyOnly || (type==INTERP_KERNEL::NORM_POLYGON || type==INTERP_KERNEL::NORM_QPOLYG))
4845 const INTERP_KERNEL::CellModel& cm(INTERP_KERNEL::CellModel::GetCellModel(type));
4846 bool isQuadratic(cm.isQuadratic());
4847 if(!IsPolygonWellOriented(isQuadratic,vec,conn+connI[i]+1,conn+connI[i+1],coordsPtr))
4850 cm.changeOrientationOf2D(conn+connI[i]+1,(unsigned int)(connI[i+1]-connI[i]-1));
4855 _nodal_connec->declareAsNew();
4860 * This method change the orientation of cells in \a this without any consideration of coordinates. Only connectivity is impacted.
4862 * \sa orientCorrectly2DCells
4864 void MEDCouplingUMesh::changeOrientationOfCells()
4866 int mdim(getMeshDimension());
4867 if(mdim!=2 && mdim!=1)
4868 throw INTERP_KERNEL::Exception("Invalid mesh to apply changeOrientationOfCells on it : must be meshDim==2 or meshDim==1 !");
4869 int nbOfCells(getNumberOfCells()),*conn(_nodal_connec->getPointer());
4870 const int *connI(_nodal_connec_index->begin());
4873 for(int i=0;i<nbOfCells;i++)
4875 INTERP_KERNEL::NormalizedCellType type((INTERP_KERNEL::NormalizedCellType)conn[connI[i]]);
4876 const INTERP_KERNEL::CellModel& cm(INTERP_KERNEL::CellModel::GetCellModel(type));
4877 cm.changeOrientationOf2D(conn+connI[i]+1,(unsigned int)(connI[i+1]-connI[i]-1));
4882 for(int i=0;i<nbOfCells;i++)
4884 INTERP_KERNEL::NormalizedCellType type((INTERP_KERNEL::NormalizedCellType)conn[connI[i]]);
4885 const INTERP_KERNEL::CellModel& cm(INTERP_KERNEL::CellModel::GetCellModel(type));
4886 cm.changeOrientationOf1D(conn+connI[i]+1,(unsigned int)(connI[i+1]-connI[i]-1));
4892 * Finds incorrectly oriented polyhedral cells, i.e. polyhedrons having correctly
4893 * oriented facets. The normal vector of the facet should point out of the cell.
4894 * \param [in,out] cells - a vector returning ids of incorrectly oriented cells. It
4895 * is not cleared before filling in.
4896 * \throw If \a this->getMeshDimension() != 3.
4897 * \throw If \a this->getSpaceDimension() != 3.
4898 * \throw If the coordinates array is not set.
4899 * \throw If the nodal connectivity of cells is not defined.
4901 * \if ENABLE_EXAMPLES
4902 * \ref cpp_mcumesh_arePolyhedronsNotCorrectlyOriented "Here is a C++ example".<br>
4903 * \ref py_mcumesh_arePolyhedronsNotCorrectlyOriented "Here is a Python example".
4906 void MEDCouplingUMesh::arePolyhedronsNotCorrectlyOriented(std::vector<int>& cells) const
4908 if(getMeshDimension()!=3 || getSpaceDimension()!=3)
4909 throw INTERP_KERNEL::Exception("Invalid mesh to apply arePolyhedronsNotCorrectlyOriented on it : must be meshDim==3 and spaceDim==3 !");
4910 int nbOfCells=getNumberOfCells();
4911 const int *conn=_nodal_connec->begin();
4912 const int *connI=_nodal_connec_index->begin();
4913 const double *coordsPtr=_coords->begin();
4914 for(int i=0;i<nbOfCells;i++)
4916 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)conn[connI[i]];
4917 if(type==INTERP_KERNEL::NORM_POLYHED)
4919 if(!IsPolyhedronWellOriented(conn+connI[i]+1,conn+connI[i+1],coordsPtr))
4926 * Tries to fix connectivity of polyhedra, so that normal vector of all facets to point
4928 * \throw If \a this->getMeshDimension() != 3.
4929 * \throw If \a this->getSpaceDimension() != 3.
4930 * \throw If the coordinates array is not set.
4931 * \throw If the nodal connectivity of cells is not defined.
4932 * \throw If the reparation fails.
4934 * \if ENABLE_EXAMPLES
4935 * \ref cpp_mcumesh_arePolyhedronsNotCorrectlyOriented "Here is a C++ example".<br>
4936 * \ref py_mcumesh_arePolyhedronsNotCorrectlyOriented "Here is a Python example".
4938 * \sa MEDCouplingUMesh::findAndCorrectBadOriented3DCells
4940 void MEDCouplingUMesh::orientCorrectlyPolyhedrons()
4942 if(getMeshDimension()!=3 || getSpaceDimension()!=3)
4943 throw INTERP_KERNEL::Exception("Invalid mesh to apply orientCorrectlyPolyhedrons on it : must be meshDim==3 and spaceDim==3 !");
4944 int nbOfCells=getNumberOfCells();
4945 int *conn=_nodal_connec->getPointer();
4946 const int *connI=_nodal_connec_index->begin();
4947 const double *coordsPtr=_coords->begin();
4948 for(int i=0;i<nbOfCells;i++)
4950 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)conn[connI[i]];
4951 if(type==INTERP_KERNEL::NORM_POLYHED)
4955 if(!IsPolyhedronWellOriented(conn+connI[i]+1,conn+connI[i+1],coordsPtr))
4956 TryToCorrectPolyhedronOrientation(conn+connI[i]+1,conn+connI[i+1],coordsPtr);
4958 catch(INTERP_KERNEL::Exception& e)
4960 std::ostringstream oss; oss << "Something wrong in polyhedron #" << i << " : " << e.what();
4961 throw INTERP_KERNEL::Exception(oss.str());
4969 * This method invert orientation of all cells in \a this.
4970 * After calling this method the absolute value of measure of cells in \a this are the same than before calling.
4971 * This method only operates on the connectivity so coordinates are not touched at all.
4973 void MEDCouplingUMesh::invertOrientationOfAllCells()
4975 checkConnectivityFullyDefined();
4976 std::set<INTERP_KERNEL::NormalizedCellType> gts(getAllGeoTypes());
4977 int *conn(_nodal_connec->getPointer());
4978 const int *conni(_nodal_connec_index->begin());
4979 for(std::set<INTERP_KERNEL::NormalizedCellType>::const_iterator gt=gts.begin();gt!=gts.end();gt++)
4981 INTERP_KERNEL::AutoCppPtr<INTERP_KERNEL::OrientationInverter> oi(INTERP_KERNEL::OrientationInverter::BuildInstanceFrom(*gt));
4982 MCAuto<DataArrayInt> cwt(giveCellsWithType(*gt));
4983 for(const int *it=cwt->begin();it!=cwt->end();it++)
4984 oi->operate(conn+conni[*it]+1,conn+conni[*it+1]);
4990 * Finds and fixes incorrectly oriented linear extruded volumes (INTERP_KERNEL::NORM_HEXA8,
4991 * INTERP_KERNEL::NORM_PENTA6, INTERP_KERNEL::NORM_HEXGP12 etc) to respect the MED convention
4992 * according to which the first facet of the cell should be oriented to have the normal vector
4993 * pointing out of cell.
4994 * \return DataArrayInt * - a new instance of DataArrayInt holding ids of fixed
4995 * cells. The caller is to delete this array using decrRef() as it is no more
4997 * \throw If \a this->getMeshDimension() != 3.
4998 * \throw If \a this->getSpaceDimension() != 3.
4999 * \throw If the coordinates array is not set.
5000 * \throw If the nodal connectivity of cells is not defined.
5002 * \if ENABLE_EXAMPLES
5003 * \ref cpp_mcumesh_findAndCorrectBadOriented3DExtrudedCells "Here is a C++ example".<br>
5004 * \ref py_mcumesh_findAndCorrectBadOriented3DExtrudedCells "Here is a Python example".
5006 * \sa MEDCouplingUMesh::findAndCorrectBadOriented3DCells
5008 DataArrayInt *MEDCouplingUMesh::findAndCorrectBadOriented3DExtrudedCells()
5010 const char msg[]="check3DCellsWellOriented detection works only for 3D cells !";
5011 if(getMeshDimension()!=3)
5012 throw INTERP_KERNEL::Exception(msg);
5013 int spaceDim=getSpaceDimension();
5015 throw INTERP_KERNEL::Exception(msg);
5017 int nbOfCells=getNumberOfCells();
5018 int *conn=_nodal_connec->getPointer();
5019 const int *connI=_nodal_connec_index->begin();
5020 const double *coo=getCoords()->begin();
5021 MCAuto<DataArrayInt> cells(DataArrayInt::New()); cells->alloc(0,1);
5022 for(int i=0;i<nbOfCells;i++)
5024 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[connI[i]]);
5025 if(cm.isExtruded() && !cm.isDynamic() && !cm.isQuadratic())
5027 if(!Is3DExtrudedStaticCellWellOriented(conn+connI[i]+1,conn+connI[i+1],coo))
5029 CorrectExtrudedStaticCell(conn+connI[i]+1,conn+connI[i+1]);
5030 cells->pushBackSilent(i);
5034 return cells.retn();
5038 * This method is a faster method to correct orientation of all 3D cells in \a this.
5039 * This method works only if \a this is a 3D mesh, that is to say a mesh with mesh dimension 3 and a space dimension 3.
5040 * This method makes the hypothesis that \a this a coherent that is to say MEDCouplingUMesh::checkConsistency should throw no exception.
5042 * \return a newly allocated int array with one components containing cell ids renumbered to fit the convention of MED (MED file and MEDCoupling)
5043 * \sa MEDCouplingUMesh::orientCorrectlyPolyhedrons,
5045 DataArrayInt *MEDCouplingUMesh::findAndCorrectBadOriented3DCells()
5047 if(getMeshDimension()!=3 || getSpaceDimension()!=3)
5048 throw INTERP_KERNEL::Exception("Invalid mesh to apply findAndCorrectBadOriented3DCells on it : must be meshDim==3 and spaceDim==3 !");
5049 int nbOfCells=getNumberOfCells();
5050 int *conn=_nodal_connec->getPointer();
5051 const int *connI=_nodal_connec_index->begin();
5052 const double *coordsPtr=_coords->begin();
5053 MCAuto<DataArrayInt> ret=DataArrayInt::New(); ret->alloc(0,1);
5054 for(int i=0;i<nbOfCells;i++)
5056 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)conn[connI[i]];
5059 case INTERP_KERNEL::NORM_TETRA4:
5061 if(!IsTetra4WellOriented(conn+connI[i]+1,conn+connI[i+1],coordsPtr))
5063 std::swap(*(conn+connI[i]+2),*(conn+connI[i]+3));
5064 ret->pushBackSilent(i);
5068 case INTERP_KERNEL::NORM_PYRA5:
5070 if(!IsPyra5WellOriented(conn+connI[i]+1,conn+connI[i+1],coordsPtr))
5072 std::swap(*(conn+connI[i]+2),*(conn+connI[i]+4));
5073 ret->pushBackSilent(i);
5077 case INTERP_KERNEL::NORM_PENTA6:
5078 case INTERP_KERNEL::NORM_HEXA8:
5079 case INTERP_KERNEL::NORM_HEXGP12:
5081 if(!Is3DExtrudedStaticCellWellOriented(conn+connI[i]+1,conn+connI[i+1],coordsPtr))
5083 CorrectExtrudedStaticCell(conn+connI[i]+1,conn+connI[i+1]);
5084 ret->pushBackSilent(i);
5088 case INTERP_KERNEL::NORM_POLYHED:
5090 if(!IsPolyhedronWellOriented(conn+connI[i]+1,conn+connI[i+1],coordsPtr))
5092 TryToCorrectPolyhedronOrientation(conn+connI[i]+1,conn+connI[i+1],coordsPtr);
5093 ret->pushBackSilent(i);
5098 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::orientCorrectly3DCells : Your mesh contains type of cell not supported yet ! send mail to anthony.geay@cea.fr to add it !");
5106 * This method has a sense for meshes with spaceDim==3 and meshDim==2.
5107 * If it is not the case an exception will be thrown.
5108 * This method is fast because the first cell of \a this is used to compute the plane.
5109 * \param vec output of size at least 3 used to store the normal vector (with norm equal to Area ) of searched plane.
5110 * \param pos output of size at least 3 used to store a point owned of searched plane.
5112 void MEDCouplingUMesh::getFastAveragePlaneOfThis(double *vec, double *pos) const
5114 if(getMeshDimension()!=2 || getSpaceDimension()!=3)
5115 throw INTERP_KERNEL::Exception("Invalid mesh to apply getFastAveragePlaneOfThis on it : must be meshDim==2 and spaceDim==3 !");
5116 const int *conn=_nodal_connec->begin();
5117 const int *connI=_nodal_connec_index->begin();
5118 const double *coordsPtr=_coords->begin();
5119 INTERP_KERNEL::areaVectorOfPolygon<int,INTERP_KERNEL::ALL_C_MODE>(conn+1,connI[1]-connI[0]-1,coordsPtr,vec);
5120 std::copy(coordsPtr+3*conn[1],coordsPtr+3*conn[1]+3,pos);
5124 * Creates a new MEDCouplingFieldDouble holding Edge Ratio values of all
5125 * cells. Currently cells of the following types are treated:
5126 * INTERP_KERNEL::NORM_TRI3, INTERP_KERNEL::NORM_QUAD4 and INTERP_KERNEL::NORM_TETRA4.
5127 * For a cell of other type an exception is thrown.
5128 * Space dimension of a 2D mesh can be either 2 or 3.
5129 * The Edge Ratio of a cell \f$t\f$ is:
5130 * \f$\frac{|t|_\infty}{|t|_0}\f$,
5131 * where \f$|t|_\infty\f$ and \f$|t|_0\f$ respectively denote the greatest and
5132 * the smallest edge lengths of \f$t\f$.
5133 * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
5134 * cells and one time, lying on \a this mesh. The caller is to delete this
5135 * field using decrRef() as it is no more needed.
5136 * \throw If the coordinates array is not set.
5137 * \throw If \a this mesh contains elements of dimension different from the mesh dimension.
5138 * \throw If the connectivity data array has more than one component.
5139 * \throw If the connectivity data array has a named component.
5140 * \throw If the connectivity index data array has more than one component.
5141 * \throw If the connectivity index data array has a named component.
5142 * \throw If \a this->getMeshDimension() is neither 2 nor 3.
5143 * \throw If \a this->getSpaceDimension() is neither 2 nor 3.
5144 * \throw If \a this mesh includes cells of type different from the ones enumerated above.
5146 MEDCouplingFieldDouble *MEDCouplingUMesh::getEdgeRatioField() const
5148 checkConsistencyLight();
5149 int spaceDim=getSpaceDimension();
5150 int meshDim=getMeshDimension();
5151 if(spaceDim!=2 && spaceDim!=3)
5152 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getEdgeRatioField : SpaceDimension must be equal to 2 or 3 !");
5153 if(meshDim!=2 && meshDim!=3)
5154 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getEdgeRatioField : MeshDimension must be equal to 2 or 3 !");
5155 MCAuto<MEDCouplingFieldDouble> ret=MEDCouplingFieldDouble::New(ON_CELLS,ONE_TIME);
5157 int nbOfCells=getNumberOfCells();
5158 MCAuto<DataArrayDouble> arr=DataArrayDouble::New();
5159 arr->alloc(nbOfCells,1);
5160 double *pt=arr->getPointer();
5161 ret->setArray(arr);//In case of throw to avoid mem leaks arr will be used after decrRef.
5162 const int *conn=_nodal_connec->begin();
5163 const int *connI=_nodal_connec_index->begin();
5164 const double *coo=_coords->begin();
5166 for(int i=0;i<nbOfCells;i++,pt++)
5168 INTERP_KERNEL::NormalizedCellType t=(INTERP_KERNEL::NormalizedCellType)*conn;
5171 case INTERP_KERNEL::NORM_TRI3:
5173 FillInCompact3DMode(spaceDim,3,conn+1,coo,tmp);
5174 *pt=INTERP_KERNEL::triEdgeRatio(tmp);
5177 case INTERP_KERNEL::NORM_QUAD4:
5179 FillInCompact3DMode(spaceDim,4,conn+1,coo,tmp);
5180 *pt=INTERP_KERNEL::quadEdgeRatio(tmp);
5183 case INTERP_KERNEL::NORM_TETRA4:
5185 FillInCompact3DMode(spaceDim,4,conn+1,coo,tmp);
5186 *pt=INTERP_KERNEL::tetraEdgeRatio(tmp);
5190 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getEdgeRatioField : A cell with not manged type (NORM_TRI3, NORM_QUAD4 and NORM_TETRA4) has been detected !");
5192 conn+=connI[i+1]-connI[i];
5194 ret->setName("EdgeRatio");
5195 ret->synchronizeTimeWithSupport();
5200 * Creates a new MEDCouplingFieldDouble holding Aspect Ratio values of all
5201 * cells. Currently cells of the following types are treated:
5202 * INTERP_KERNEL::NORM_TRI3, INTERP_KERNEL::NORM_QUAD4 and INTERP_KERNEL::NORM_TETRA4.
5203 * For a cell of other type an exception is thrown.
5204 * Space dimension of a 2D mesh can be either 2 or 3.
5205 * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
5206 * cells and one time, lying on \a this mesh. The caller is to delete this
5207 * field using decrRef() as it is no more needed.
5208 * \throw If the coordinates array is not set.
5209 * \throw If \a this mesh contains elements of dimension different from the mesh dimension.
5210 * \throw If the connectivity data array has more than one component.
5211 * \throw If the connectivity data array has a named component.
5212 * \throw If the connectivity index data array has more than one component.
5213 * \throw If the connectivity index data array has a named component.
5214 * \throw If \a this->getMeshDimension() is neither 2 nor 3.
5215 * \throw If \a this->getSpaceDimension() is neither 2 nor 3.
5216 * \throw If \a this mesh includes cells of type different from the ones enumerated above.
5218 MEDCouplingFieldDouble *MEDCouplingUMesh::getAspectRatioField() const
5220 checkConsistencyLight();
5221 int spaceDim=getSpaceDimension();
5222 int meshDim=getMeshDimension();
5223 if(spaceDim!=2 && spaceDim!=3)
5224 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getAspectRatioField : SpaceDimension must be equal to 2 or 3 !");
5225 if(meshDim!=2 && meshDim!=3)
5226 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getAspectRatioField : MeshDimension must be equal to 2 or 3 !");
5227 MCAuto<MEDCouplingFieldDouble> ret=MEDCouplingFieldDouble::New(ON_CELLS,ONE_TIME);
5229 int nbOfCells=getNumberOfCells();
5230 MCAuto<DataArrayDouble> arr=DataArrayDouble::New();
5231 arr->alloc(nbOfCells,1);
5232 double *pt=arr->getPointer();
5233 ret->setArray(arr);//In case of throw to avoid mem leaks arr will be used after decrRef.
5234 const int *conn=_nodal_connec->begin();
5235 const int *connI=_nodal_connec_index->begin();
5236 const double *coo=_coords->begin();
5238 for(int i=0;i<nbOfCells;i++,pt++)
5240 INTERP_KERNEL::NormalizedCellType t=(INTERP_KERNEL::NormalizedCellType)*conn;
5243 case INTERP_KERNEL::NORM_TRI3:
5245 FillInCompact3DMode(spaceDim,3,conn+1,coo,tmp);
5246 *pt=INTERP_KERNEL::triAspectRatio(tmp);
5249 case INTERP_KERNEL::NORM_QUAD4:
5251 FillInCompact3DMode(spaceDim,4,conn+1,coo,tmp);
5252 *pt=INTERP_KERNEL::quadAspectRatio(tmp);
5255 case INTERP_KERNEL::NORM_TETRA4:
5257 FillInCompact3DMode(spaceDim,4,conn+1,coo,tmp);
5258 *pt=INTERP_KERNEL::tetraAspectRatio(tmp);
5262 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getAspectRatioField : A cell with not manged type (NORM_TRI3, NORM_QUAD4 and NORM_TETRA4) has been detected !");
5264 conn+=connI[i+1]-connI[i];
5266 ret->setName("AspectRatio");
5267 ret->synchronizeTimeWithSupport();
5272 * Creates a new MEDCouplingFieldDouble holding Warping factor values of all
5273 * cells of \a this 2D mesh in 3D space. It is a measure of the "planarity" of 2D cell
5274 * in 3D space. Currently only cells of the following types are
5275 * treated: INTERP_KERNEL::NORM_QUAD4.
5276 * For a cell of other type an exception is thrown.
5277 * The warp field is computed as follows: let (a,b,c,d) be the points of the quad.
5279 * \f$t=\vec{da}\times\vec{ab}\f$,
5280 * \f$u=\vec{ab}\times\vec{bc}\f$
5281 * \f$v=\vec{bc}\times\vec{cd}\f$
5282 * \f$w=\vec{cd}\times\vec{da}\f$, the warp is defined as \f$W^3\f$ with
5284 * W=min(\frac{t}{|t|}\cdot\frac{v}{|v|}, \frac{u}{|u|}\cdot\frac{w}{|w|})
5286 * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
5287 * cells and one time, lying on \a this mesh. The caller is to delete this
5288 * field using decrRef() as it is no more needed.
5289 * \throw If the coordinates array is not set.
5290 * \throw If \a this mesh contains elements of dimension different from the mesh dimension.
5291 * \throw If the connectivity data array has more than one component.
5292 * \throw If the connectivity data array has a named component.
5293 * \throw If the connectivity index data array has more than one component.
5294 * \throw If the connectivity index data array has a named component.
5295 * \throw If \a this->getMeshDimension() != 2.
5296 * \throw If \a this->getSpaceDimension() != 3.
5297 * \throw If \a this mesh includes cells of type different from the ones enumerated above.
5299 MEDCouplingFieldDouble *MEDCouplingUMesh::getWarpField() const
5301 checkConsistencyLight();
5302 int spaceDim=getSpaceDimension();
5303 int meshDim=getMeshDimension();
5305 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getWarpField : SpaceDimension must be equal to 3 !");
5307 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getWarpField : MeshDimension must be equal to 2 !");
5308 MCAuto<MEDCouplingFieldDouble> ret=MEDCouplingFieldDouble::New(ON_CELLS,ONE_TIME);
5310 int nbOfCells=getNumberOfCells();
5311 MCAuto<DataArrayDouble> arr=DataArrayDouble::New();
5312 arr->alloc(nbOfCells,1);
5313 double *pt=arr->getPointer();
5314 ret->setArray(arr);//In case of throw to avoid mem leaks arr will be used after decrRef.
5315 const int *conn=_nodal_connec->begin();
5316 const int *connI=_nodal_connec_index->begin();
5317 const double *coo=_coords->begin();
5319 for(int i=0;i<nbOfCells;i++,pt++)
5321 INTERP_KERNEL::NormalizedCellType t=(INTERP_KERNEL::NormalizedCellType)*conn;
5324 case INTERP_KERNEL::NORM_QUAD4:
5326 FillInCompact3DMode(3,4,conn+1,coo,tmp);
5327 *pt=INTERP_KERNEL::quadWarp(tmp);
5331 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getWarpField : A cell with not manged type (NORM_QUAD4) has been detected !");
5333 conn+=connI[i+1]-connI[i];
5335 ret->setName("Warp");
5336 ret->synchronizeTimeWithSupport();
5342 * Creates a new MEDCouplingFieldDouble holding Skew factor values of all
5343 * cells of \a this 2D mesh in 3D space. Currently cells of the following types are
5344 * treated: INTERP_KERNEL::NORM_QUAD4.
5345 * The skew is computed as follow for a quad with points (a,b,c,d): let
5346 * \f$u=\vec{ab}+\vec{dc}\f$ and \f$v=\vec{ac}+\vec{bd}\f$
5347 * then the skew is computed as:
5349 * s=\frac{u}{|u|}\cdot\frac{v}{|v|}
5352 * For a cell of other type an exception is thrown.
5353 * \return MEDCouplingFieldDouble * - a new instance of MEDCouplingFieldDouble on
5354 * cells and one time, lying on \a this mesh. The caller is to delete this
5355 * field using decrRef() as it is no more needed.
5356 * \throw If the coordinates array is not set.
5357 * \throw If \a this mesh contains elements of dimension different from the mesh dimension.
5358 * \throw If the connectivity data array has more than one component.
5359 * \throw If the connectivity data array has a named component.
5360 * \throw If the connectivity index data array has more than one component.
5361 * \throw If the connectivity index data array has a named component.
5362 * \throw If \a this->getMeshDimension() != 2.
5363 * \throw If \a this->getSpaceDimension() != 3.
5364 * \throw If \a this mesh includes cells of type different from the ones enumerated above.
5366 MEDCouplingFieldDouble *MEDCouplingUMesh::getSkewField() const
5368 checkConsistencyLight();
5369 int spaceDim=getSpaceDimension();
5370 int meshDim=getMeshDimension();
5372 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getSkewField : SpaceDimension must be equal to 3 !");
5374 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getSkewField : MeshDimension must be equal to 2 !");
5375 MCAuto<MEDCouplingFieldDouble> ret=MEDCouplingFieldDouble::New(ON_CELLS,ONE_TIME);
5377 int nbOfCells=getNumberOfCells();
5378 MCAuto<DataArrayDouble> arr=DataArrayDouble::New();
5379 arr->alloc(nbOfCells,1);
5380 double *pt=arr->getPointer();
5381 ret->setArray(arr);//In case of throw to avoid mem leaks arr will be used after decrRef.
5382 const int *conn=_nodal_connec->begin();
5383 const int *connI=_nodal_connec_index->begin();
5384 const double *coo=_coords->begin();
5386 for(int i=0;i<nbOfCells;i++,pt++)
5388 INTERP_KERNEL::NormalizedCellType t=(INTERP_KERNEL::NormalizedCellType)*conn;
5391 case INTERP_KERNEL::NORM_QUAD4:
5393 FillInCompact3DMode(3,4,conn+1,coo,tmp);
5394 *pt=INTERP_KERNEL::quadSkew(tmp);
5398 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getSkewField : A cell with not manged type (NORM_QUAD4) has been detected !");
5400 conn+=connI[i+1]-connI[i];
5402 ret->setName("Skew");
5403 ret->synchronizeTimeWithSupport();
5408 * Returns the cell field giving for each cell in \a this its diameter. Diameter means the max length of all possible SEG2 in the cell.
5410 * \return a new instance of field containing the result. The returned instance has to be deallocated by the caller.
5412 * \sa getSkewField, getWarpField, getAspectRatioField, getEdgeRatioField
5414 MEDCouplingFieldDouble *MEDCouplingUMesh::computeDiameterField() const
5416 checkConsistencyLight();
5417 MCAuto<MEDCouplingFieldDouble> ret(MEDCouplingFieldDouble::New(ON_CELLS,ONE_TIME));
5419 std::set<INTERP_KERNEL::NormalizedCellType> types;
5420 ComputeAllTypesInternal(types,_nodal_connec,_nodal_connec_index);
5421 int spaceDim(getSpaceDimension()),nbCells(getNumberOfCells());
5422 MCAuto<DataArrayDouble> arr(DataArrayDouble::New());
5423 arr->alloc(nbCells,1);
5424 for(std::set<INTERP_KERNEL::NormalizedCellType>::const_iterator it=types.begin();it!=types.end();it++)
5426 INTERP_KERNEL::AutoCppPtr<INTERP_KERNEL::DiameterCalculator> dc(INTERP_KERNEL::CellModel::GetCellModel(*it).buildInstanceOfDiameterCalulator(spaceDim));
5427 MCAuto<DataArrayInt> cellIds(giveCellsWithType(*it));
5428 dc->computeForListOfCellIdsUMeshFrmt(cellIds->begin(),cellIds->end(),_nodal_connec_index->begin(),_nodal_connec->begin(),getCoords()->begin(),arr->getPointer());
5431 ret->setName("Diameter");
5436 * This method aggregate the bbox of each cell and put it into bbox parameter (xmin,xmax,ymin,ymax,zmin,zmax).
5438 * \param [in] arcDetEps - a parameter specifying in case of 2D quadratic polygon cell the detection limit between linear and arc circle. (By default 1e-12)
5439 * For all other cases this input parameter is ignored.
5440 * \return DataArrayDouble * - newly created object (to be managed by the caller) \a this number of cells tuples and 2*spacedim components.
5442 * \throw If \a this is not fully set (coordinates and connectivity).
5443 * \throw If a cell in \a this has no valid nodeId.
5444 * \sa MEDCouplingUMesh::getBoundingBoxForBBTreeFast, MEDCouplingUMesh::getBoundingBoxForBBTree2DQuadratic
5446 DataArrayDouble *MEDCouplingUMesh::getBoundingBoxForBBTree(double arcDetEps) const
5448 int mDim(getMeshDimension()),sDim(getSpaceDimension());
5449 if((mDim==3 && sDim==3) || (mDim==2 && sDim==3) || (mDim==1 && sDim==1) || ( mDim==1 && sDim==3)) // Compute refined boundary box for quadratic elements only in 2D.
5450 return getBoundingBoxForBBTreeFast();
5451 if((mDim==2 && sDim==2) || (mDim==1 && sDim==2))
5453 bool presenceOfQuadratic(false);
5454 for(std::set<INTERP_KERNEL::NormalizedCellType>::const_iterator it=_types.begin();it!=_types.end();it++)
5456 const INTERP_KERNEL::CellModel& cm(INTERP_KERNEL::CellModel::GetCellModel(*it));
5457 if(cm.isQuadratic())
5458 presenceOfQuadratic=true;
5460 if(!presenceOfQuadratic)
5461 return getBoundingBoxForBBTreeFast();
5462 if(mDim==2 && sDim==2)
5463 return getBoundingBoxForBBTree2DQuadratic(arcDetEps);
5465 return getBoundingBoxForBBTree1DQuadratic(arcDetEps);
5467 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getBoundingBoxForBBTree : Managed dimensions are (mDim=1,sDim=1), (mDim=1,sDim=2), (mDim=1,sDim=3), (mDim=2,sDim=2), (mDim=2,sDim=3) and (mDim=3,sDim=3) !");
5471 * This method aggregate the bbox of each cell only considering the nodes constituting each cell and put it into bbox parameter.
5472 * So meshes having quadratic cells the computed bounding boxes can be invalid !
5474 * \return DataArrayDouble * - newly created object (to be managed by the caller) \a this number of cells tuples and 2*spacedim components.
5476 * \throw If \a this is not fully set (coordinates and connectivity).
5477 * \throw If a cell in \a this has no valid nodeId.
5479 DataArrayDouble *MEDCouplingUMesh::getBoundingBoxForBBTreeFast() const
5481 checkFullyDefined();
5482 int spaceDim(getSpaceDimension()),nbOfCells(getNumberOfCells()),nbOfNodes(getNumberOfNodes());
5483 MCAuto<DataArrayDouble> ret(DataArrayDouble::New()); ret->alloc(nbOfCells,2*spaceDim);
5484 double *bbox(ret->getPointer());
5485 for(int i=0;i<nbOfCells*spaceDim;i++)
5487 bbox[2*i]=std::numeric_limits<double>::max();
5488 bbox[2*i+1]=-std::numeric_limits<double>::max();
5490 const double *coordsPtr(_coords->begin());
5491 const int *conn(_nodal_connec->begin()),*connI(_nodal_connec_index->begin());
5492 for(int i=0;i<nbOfCells;i++)
5494 int offset=connI[i]+1;
5495 int nbOfNodesForCell(connI[i+1]-offset),kk(0);
5496 for(int j=0;j<nbOfNodesForCell;j++)
5498 int nodeId=conn[offset+j];
5499 if(nodeId>=0 && nodeId<nbOfNodes)
5501 for(int k=0;k<spaceDim;k++)
5503 bbox[2*spaceDim*i+2*k]=std::min(bbox[2*spaceDim*i+2*k],coordsPtr[spaceDim*nodeId+k]);
5504 bbox[2*spaceDim*i+2*k+1]=std::max(bbox[2*spaceDim*i+2*k+1],coordsPtr[spaceDim*nodeId+k]);
5511 std::ostringstream oss; oss << "MEDCouplingUMesh::getBoundingBoxForBBTree : cell #" << i << " contains no valid nodeId !";
5512 throw INTERP_KERNEL::Exception(oss.str());
5519 * This method aggregates the bbox of each 2D cell in \a this considering the whole shape. This method is particularly
5520 * useful for 2D meshes having quadratic cells
5521 * because for this type of cells getBoundingBoxForBBTreeFast method may return invalid bounding boxes (since it just considers
5522 * the two extremities of the arc of circle).
5524 * \param [in] arcDetEps - a parameter specifying in case of 2D quadratic polygon cell the detection limit between linear and arc circle. (By default 1e-12)
5525 * \return DataArrayDouble * - newly created object (to be managed by the caller) \a this number of cells tuples and 2*spacedim components.
5526 * \throw If \a this is not fully defined.
5527 * \throw If \a this is not a mesh with meshDimension equal to 2.
5528 * \throw If \a this is not a mesh with spaceDimension equal to 2.
5529 * \sa MEDCouplingUMesh::getBoundingBoxForBBTree1DQuadratic
5531 DataArrayDouble *MEDCouplingUMesh::getBoundingBoxForBBTree2DQuadratic(double arcDetEps) const
5533 checkFullyDefined();
5534 INTERP_KERNEL::QuadraticPlanarPrecision arcPrec(arcDetEps);
5536 int spaceDim(getSpaceDimension()),mDim(getMeshDimension()),nbOfCells(getNumberOfCells());
5537 if(spaceDim!=2 || mDim!=2)
5538 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getBoundingBoxForBBTree2DQuadratic : This method should be applied on mesh with mesh dimension equal to 2 and space dimension also equal to 2!");
5539 MCAuto<DataArrayDouble> ret(DataArrayDouble::New()); ret->alloc(nbOfCells,2*spaceDim);
5540 double *bbox(ret->getPointer());
5541 const double *coords(_coords->begin());
5542 const int *conn(_nodal_connec->begin()),*connI(_nodal_connec_index->begin());
5543 for(int i=0;i<nbOfCells;i++,bbox+=4,connI++)
5545 const INTERP_KERNEL::CellModel& cm(INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[*connI]));
5546 int sz(connI[1]-connI[0]-1);
5547 std::vector<INTERP_KERNEL::Node *> nodes(sz);
5548 INTERP_KERNEL::QuadraticPolygon *pol(0);
5549 for(int j=0;j<sz;j++)
5551 int nodeId(conn[*connI+1+j]);
5552 nodes[j]=new INTERP_KERNEL::Node(coords[nodeId*2],coords[nodeId*2+1]);
5554 if(!cm.isQuadratic())
5555 pol=INTERP_KERNEL::QuadraticPolygon::BuildLinearPolygon(nodes);
5557 pol=INTERP_KERNEL::QuadraticPolygon::BuildArcCirclePolygon(nodes);
5558 INTERP_KERNEL::Bounds b; b.prepareForAggregation(); pol->fillBounds(b); delete pol;
5559 bbox[0]=b.getXMin(); bbox[1]=b.getXMax(); bbox[2]=b.getYMin(); bbox[3]=b.getYMax();
5565 * This method aggregates the bbox of each 1D cell in \a this considering the whole shape. This method is particularly
5566 * useful for 2D meshes having quadratic cells
5567 * because for this type of cells getBoundingBoxForBBTreeFast method may return invalid bounding boxes (since it just considers
5568 * the two extremities of the arc of circle).
5570 * \param [in] arcDetEps - a parameter specifying in case of 2D quadratic polygon cell the detection limit between linear and arc circle. (By default 1e-12)
5571 * \return DataArrayDouble * - newly created object (to be managed by the caller) \a this number of cells tuples and 2*spacedim components.
5572 * \throw If \a this is not fully defined.
5573 * \throw If \a this is not a mesh with meshDimension equal to 1.
5574 * \throw If \a this is not a mesh with spaceDimension equal to 2.
5575 * \sa MEDCouplingUMesh::getBoundingBoxForBBTree2DQuadratic
5577 DataArrayDouble *MEDCouplingUMesh::getBoundingBoxForBBTree1DQuadratic(double arcDetEps) const
5579 checkFullyDefined();
5580 int spaceDim(getSpaceDimension()),mDim(getMeshDimension()),nbOfCells(getNumberOfCells());
5581 if(spaceDim!=2 || mDim!=1)
5582 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::getBoundingBoxForBBTree1DQuadratic : This method should be applied on mesh with mesh dimension equal to 1 and space dimension also equal to 2!");
5583 INTERP_KERNEL::QuadraticPlanarPrecision arcPrec(arcDetEps);
5584 MCAuto<DataArrayDouble> ret(DataArrayDouble::New()); ret->alloc(nbOfCells,2*spaceDim);
5585 double *bbox(ret->getPointer());
5586 const double *coords(_coords->begin());
5587 const int *conn(_nodal_connec->begin()),*connI(_nodal_connec_index->begin());
5588 for(int i=0;i<nbOfCells;i++,bbox+=4,connI++)
5590 const INTERP_KERNEL::CellModel& cm(INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[*connI]));
5591 int sz(connI[1]-connI[0]-1);
5592 std::vector<INTERP_KERNEL::Node *> nodes(sz);
5593 INTERP_KERNEL::Edge *edge(0);
5594 for(int j=0;j<sz;j++)
5596 int nodeId(conn[*connI+1+j]);
5597 nodes[j]=new INTERP_KERNEL::Node(coords[nodeId*2],coords[nodeId*2+1]);
5599 if(!cm.isQuadratic())
5600 edge=INTERP_KERNEL::QuadraticPolygon::BuildLinearEdge(nodes);
5602 edge=INTERP_KERNEL::QuadraticPolygon::BuildArcCircleEdge(nodes);
5603 const INTERP_KERNEL::Bounds& b(edge->getBounds());
5604 bbox[0]=b.getXMin(); bbox[1]=b.getXMax(); bbox[2]=b.getYMin(); bbox[3]=b.getYMax(); edge->decrRef();
5611 namespace MEDCouplingImpl
5616 ConnReader(const int *c, int val):_conn(c),_val(val) { }
5617 bool operator() (const int& pos) { return _conn[pos]!=_val; }
5626 ConnReader2(const int *c, int val):_conn(c),_val(val) { }
5627 bool operator() (const int& pos) { return _conn[pos]==_val; }
5637 * This method expects that \a this is sorted by types. If not an exception will be thrown.
5638 * This method returns in the same format as code (see MEDCouplingUMesh::checkTypeConsistencyAndContig or MEDCouplingUMesh::splitProfilePerType) how
5639 * \a this is composed in cell types.
5640 * The returned array is of size 3*n where n is the number of different types present in \a this.
5641 * For every k in [0,n] ret[3*k+2]==-1 because it has no sense here.
5642 * This parameter is kept only for compatibility with other method listed above.
5644 std::vector<int> MEDCouplingUMesh::getDistributionOfTypes() const
5646 checkConnectivityFullyDefined();
5647 const int *conn=_nodal_connec->begin();
5648 const int *connI=_nodal_connec_index->begin();
5649 const int *work=connI;
5650 int nbOfCells=getNumberOfCells();
5651 std::size_t n=getAllGeoTypes().size();
5652 std::vector<int> ret(3*n,-1); //ret[3*k+2]==-1 because it has no sense here
5653 std::set<INTERP_KERNEL::NormalizedCellType> types;
5654 for(std::size_t i=0;work!=connI+nbOfCells;i++)
5656 INTERP_KERNEL::NormalizedCellType typ=(INTERP_KERNEL::NormalizedCellType)conn[*work];
5657 if(types.find(typ)!=types.end())
5659 std::ostringstream oss; oss << "MEDCouplingUMesh::getDistributionOfTypes : Type " << INTERP_KERNEL::CellModel::GetCellModel(typ).getRepr();
5660 oss << " is not contiguous !";
5661 throw INTERP_KERNEL::Exception(oss.str());
5665 const int *work2=std::find_if(work+1,connI+nbOfCells,MEDCouplingImpl::ConnReader(conn,typ));
5666 ret[3*i+1]=(int)std::distance(work,work2);
5673 * This method is used to check that this has contiguous cell type in same order than described in \a code.
5674 * only for types cell, type node is not managed.
5675 * Format of \a code is the following. \a code should be of size 3*n and non empty. If not an exception is thrown.
5676 * foreach k in [0,n) on 3*k pos represent the geometric type and 3*k+1 number of elements of type 3*k.
5677 * 3*k+2 refers if different from -1 the pos in 'idsPerType' to get the corresponding array.
5678 * If 2 or more same geometric type is in \a code and exception is thrown too.
5680 * This method firstly checks
5681 * If it exists k so that 3*k geometric type is not in geometric types of this an exception will be thrown.
5682 * If it exists k so that 3*k geometric type exists but the number of consecutive cell types does not match,
5683 * an exception is thrown too.
5685 * If all geometric types in \a code are exactly those in \a this null pointer is returned.
5686 * If it exists a geometric type in \a this \b not in \a code \b no exception is thrown
5687 * and a DataArrayInt instance is returned that the user has the responsibility to deallocate.
5689 DataArrayInt *MEDCouplingUMesh::checkTypeConsistencyAndContig(const std::vector<int>& code, const std::vector<const DataArrayInt *>& idsPerType) const
5692 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::checkTypeConsistencyAndContig : code is empty, should not !");
5693 std::size_t sz=code.size();
5696 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::checkTypeConsistencyAndContig : code size is NOT %3 !");
5697 std::vector<INTERP_KERNEL::NormalizedCellType> types;
5699 bool isNoPflUsed=true;
5700 for(std::size_t i=0;i<n;i++)
5701 if(std::find(types.begin(),types.end(),(INTERP_KERNEL::NormalizedCellType)code[3*i])==types.end())
5703 types.push_back((INTERP_KERNEL::NormalizedCellType)code[3*i]);
5705 if(_types.find((INTERP_KERNEL::NormalizedCellType)code[3*i])==_types.end())
5706 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::checkTypeConsistencyAndContig : expected geo types not in this !");
5707 isNoPflUsed=isNoPflUsed && (code[3*i+2]==-1);
5710 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::checkTypeConsistencyAndContig : code contains duplication of types in unstructured mesh !");
5713 if(!checkConsecutiveCellTypesAndOrder(&types[0],&types[0]+types.size()))
5714 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::checkTypeConsistencyAndContig : non contiguous type !");
5715 if(types.size()==_types.size())
5718 MCAuto<DataArrayInt> ret=DataArrayInt::New();
5720 int *retPtr=ret->getPointer();
5721 const int *connI=_nodal_connec_index->begin();
5722 const int *conn=_nodal_connec->begin();
5723 int nbOfCells=getNumberOfCells();
5726 for(std::vector<INTERP_KERNEL::NormalizedCellType>::const_iterator it=types.begin();it!=types.end();it++,kk++)
5728 i=std::find_if(i,connI+nbOfCells,MEDCouplingImpl::ConnReader2(conn,(int)(*it)));
5729 int offset=(int)std::distance(connI,i);
5730 const int *j=std::find_if(i+1,connI+nbOfCells,MEDCouplingImpl::ConnReader(conn,(int)(*it)));
5731 int nbOfCellsOfCurType=(int)std::distance(i,j);
5732 if(code[3*kk+2]==-1)
5733 for(int k=0;k<nbOfCellsOfCurType;k++)
5737 int idInIdsPerType=code[3*kk+2];
5738 if(idInIdsPerType>=0 && idInIdsPerType<(int)idsPerType.size())
5740 const DataArrayInt *zePfl=idsPerType[idInIdsPerType];
5743 zePfl->checkAllocated();
5744 if(zePfl->getNumberOfComponents()==1)
5746 for(const int *k=zePfl->begin();k!=zePfl->end();k++,retPtr++)
5748 if(*k>=0 && *k<nbOfCellsOfCurType)
5749 *retPtr=(*k)+offset;
5752 std::ostringstream oss; oss << "MEDCouplingUMesh::checkTypeConsistencyAndContig : the section " << kk << " points to the profile #" << idInIdsPerType;
5753 oss << ", and this profile contains a value " << *k << " should be in [0," << nbOfCellsOfCurType << ") !";
5754 throw INTERP_KERNEL::Exception(oss.str());
5759 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::checkTypeConsistencyAndContig : presence of a profile with nb of compo != 1 !");
5762 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::checkTypeConsistencyAndContig : presence of null profile !");
5766 std::ostringstream oss; oss << "MEDCouplingUMesh::checkTypeConsistencyAndContig : at section " << kk << " of code it points to the array #" << idInIdsPerType;
5767 oss << " should be in [0," << idsPerType.size() << ") !";
5768 throw INTERP_KERNEL::Exception(oss.str());
5777 * This method makes the hypothesis that \a this is sorted by type. If not an exception will be thrown.
5778 * This method is the opposite of MEDCouplingUMesh::checkTypeConsistencyAndContig method. Given a list of cells in \a profile it returns a list of sub-profiles sorted by geo type.
5779 * The result is put in the array \a idsPerType. In the returned parameter \a code, foreach i \a code[3*i+2] refers (if different from -1) to a location into the \a idsPerType.
5780 * This method has 1 input \a profile and 3 outputs \a code \a idsInPflPerType and \a idsPerType.
5782 * \param [in] profile
5783 * \param [out] code is a vector of size 3*n where n is the number of different geometric type in \a this \b reduced to the profile \a profile. \a code has exactly the same semantic than in MEDCouplingUMesh::checkTypeConsistencyAndContig method.
5784 * \param [out] idsInPflPerType is a vector of size of different geometric type in the subpart defined by \a profile of \a this ( equal to \a code.size()/3). For each i,
5785 * \a idsInPflPerType[i] stores the tuple ids in \a profile that correspond to the geometric type code[3*i+0]
5786 * \param [out] idsPerType is a vector of size of different sub profiles needed to be defined to represent the profile \a profile for a given geometric type.
5787 * This vector can be empty in case of all geometric type cells are fully covered in ascending in the given input \a profile.
5788 * \throw if \a profile has not exactly one component. It throws too, if \a profile contains some values not in [0,getNumberOfCells()) or if \a this is not fully defined
5790 void MEDCouplingUMesh::splitProfilePerType(const DataArrayInt *profile, std::vector<int>& code, std::vector<DataArrayInt *>& idsInPflPerType, std::vector<DataArrayInt *>& idsPerType, bool smartPflKiller) const
5793 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::splitProfilePerType : input profile is NULL !");
5794 if(profile->getNumberOfComponents()!=1)
5795 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::splitProfilePerType : input profile should have exactly one component !");
5796 checkConnectivityFullyDefined();
5797 const int *conn=_nodal_connec->begin();
5798 const int *connI=_nodal_connec_index->begin();
5799 int nbOfCells=getNumberOfCells();
5800 std::vector<INTERP_KERNEL::NormalizedCellType> types;
5801 std::vector<int> typeRangeVals(1);
5802 for(const int *i=connI;i!=connI+nbOfCells;)
5804 INTERP_KERNEL::NormalizedCellType curType=(INTERP_KERNEL::NormalizedCellType)conn[*i];
5805 if(std::find(types.begin(),types.end(),curType)!=types.end())
5807 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::splitProfilePerType : current mesh is not sorted by type !");
5809 types.push_back(curType);
5810 i=std::find_if(i+1,connI+nbOfCells,MEDCouplingImpl::ConnReader(conn,(int)curType));
5811 typeRangeVals.push_back((int)std::distance(connI,i));
5814 DataArrayInt *castArr=0,*rankInsideCast=0,*castsPresent=0;
5815 profile->splitByValueRange(&typeRangeVals[0],&typeRangeVals[0]+typeRangeVals.size(),castArr,rankInsideCast,castsPresent);
5816 MCAuto<DataArrayInt> tmp0=castArr;
5817 MCAuto<DataArrayInt> tmp1=rankInsideCast;
5818 MCAuto<DataArrayInt> tmp2=castsPresent;
5820 int nbOfCastsFinal=castsPresent->getNumberOfTuples();
5821 code.resize(3*nbOfCastsFinal);
5822 std::vector< MCAuto<DataArrayInt> > idsInPflPerType2;
5823 std::vector< MCAuto<DataArrayInt> > idsPerType2;
5824 for(int i=0;i<nbOfCastsFinal;i++)
5826 int castId=castsPresent->getIJ(i,0);
5827 MCAuto<DataArrayInt> tmp3=castArr->findIdsEqual(castId);
5828 idsInPflPerType2.push_back(tmp3);
5829 code[3*i]=(int)types[castId];
5830 code[3*i+1]=tmp3->getNumberOfTuples();
5831 MCAuto<DataArrayInt> tmp4=rankInsideCast->selectByTupleId(tmp3->begin(),tmp3->begin()+tmp3->getNumberOfTuples());
5832 if(!smartPflKiller || !tmp4->isIota(typeRangeVals[castId+1]-typeRangeVals[castId]))
5834 tmp4->copyStringInfoFrom(*profile);
5835 idsPerType2.push_back(tmp4);
5836 code[3*i+2]=(int)idsPerType2.size()-1;
5843 std::size_t sz2=idsInPflPerType2.size();
5844 idsInPflPerType.resize(sz2);
5845 for(std::size_t i=0;i<sz2;i++)
5847 DataArrayInt *locDa=idsInPflPerType2[i];
5849 idsInPflPerType[i]=locDa;
5851 std::size_t sz=idsPerType2.size();
5852 idsPerType.resize(sz);
5853 for(std::size_t i=0;i<sz;i++)
5855 DataArrayInt *locDa=idsPerType2[i];
5857 idsPerType[i]=locDa;
5862 * This method is here too emulate the MEDMEM behaviour on BDC (buildDescendingConnectivity). Hoping this method becomes deprecated very soon.
5863 * This method make the assumption that \a this and 'nM1LevMesh' mesh lyies on same coords (same pointer) as MED and MEDMEM does.
5864 * The following equality should be verified 'nM1LevMesh->getMeshDimension()==this->getMeshDimension()-1'
5865 * This method returns 5+2 elements. 'desc', 'descIndx', 'revDesc', 'revDescIndx' and 'meshnM1' behaves exactly as MEDCoupling::MEDCouplingUMesh::buildDescendingConnectivity except the content as described after. The returned array specifies the n-1 mesh reordered by type as MEDMEM does. 'nM1LevMeshIds' contains the ids in returned 'meshnM1'. Finally 'meshnM1Old2New' contains numbering old2new that is to say the cell #k in coarse 'nM1LevMesh' will have the number ret[k] in returned mesh 'nM1LevMesh' MEDMEM reordered.
5867 MEDCouplingUMesh *MEDCouplingUMesh::emulateMEDMEMBDC(const MEDCouplingUMesh *nM1LevMesh, DataArrayInt *desc, DataArrayInt *descIndx, DataArrayInt *&revDesc, DataArrayInt *&revDescIndx, DataArrayInt *& nM1LevMeshIds, DataArrayInt *&meshnM1Old2New) const
5869 checkFullyDefined();
5870 nM1LevMesh->checkFullyDefined();
5871 if(getMeshDimension()-1!=nM1LevMesh->getMeshDimension())
5872 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::emulateMEDMEMBDC : The mesh passed as first argument should have a meshDim equal to this->getMeshDimension()-1 !" );
5873 if(_coords!=nM1LevMesh->getCoords())
5874 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::emulateMEDMEMBDC : 'this' and mesh in first argument should share the same coords : Use tryToShareSameCoords method !");
5875 MCAuto<DataArrayInt> tmp0=DataArrayInt::New();
5876 MCAuto<DataArrayInt> tmp1=DataArrayInt::New();
5877 MCAuto<MEDCouplingUMesh> ret1=buildDescendingConnectivity(desc,descIndx,tmp0,tmp1);
5878 MCAuto<DataArrayInt> ret0=ret1->sortCellsInMEDFileFrmt();
5879 desc->transformWithIndArr(ret0->begin(),ret0->begin()+ret0->getNbOfElems());
5880 MCAuto<MEDCouplingUMesh> tmp=MEDCouplingUMesh::New();
5881 tmp->setConnectivity(tmp0,tmp1);
5882 tmp->renumberCells(ret0->begin(),false);
5883 revDesc=tmp->getNodalConnectivity();
5884 revDescIndx=tmp->getNodalConnectivityIndex();
5885 DataArrayInt *ret=0;
5886 if(!ret1->areCellsIncludedIn(nM1LevMesh,2,ret))
5889 ret->getMaxValue(tmp2);
5891 std::ostringstream oss; oss << "MEDCouplingUMesh::emulateMEDMEMBDC : input N-1 mesh present a cell not in descending mesh ... Id of cell is " << tmp2 << " !";
5892 throw INTERP_KERNEL::Exception(oss.str());
5897 revDescIndx->incrRef();
5900 meshnM1Old2New=ret0;
5905 * Permutes the nodal connectivity arrays so that the cells are sorted by type, which is
5906 * necessary for writing the mesh to MED file. Additionally returns a permutation array
5907 * in "Old to New" mode.
5908 * \return DataArrayInt * - a new instance of DataArrayInt. The caller is to delete
5909 * this array using decrRef() as it is no more needed.
5910 * \throw If the nodal connectivity of cells is not defined.
5912 DataArrayInt *MEDCouplingUMesh::sortCellsInMEDFileFrmt()
5914 checkConnectivityFullyDefined();
5915 MCAuto<DataArrayInt> ret=getRenumArrForMEDFileFrmt();
5916 renumberCells(ret->begin(),false);
5921 * This methods checks that cells are sorted by their types.
5922 * This method makes asumption (no check) that connectivity is correctly set before calling.
5924 bool MEDCouplingUMesh::checkConsecutiveCellTypes() const
5926 checkFullyDefined();
5927 const int *conn=_nodal_connec->begin();
5928 const int *connI=_nodal_connec_index->begin();
5929 int nbOfCells=getNumberOfCells();
5930 std::set<INTERP_KERNEL::NormalizedCellType> types;
5931 for(const int *i=connI;i!=connI+nbOfCells;)
5933 INTERP_KERNEL::NormalizedCellType curType=(INTERP_KERNEL::NormalizedCellType)conn[*i];
5934 if(types.find(curType)!=types.end())
5936 types.insert(curType);
5937 i=std::find_if(i+1,connI+nbOfCells,MEDCouplingImpl::ConnReader(conn,(int)curType));
5943 * This method is a specialization of MEDCouplingUMesh::checkConsecutiveCellTypesAndOrder method that is called here.
5944 * The geometric type order is specified by MED file.
5946 * \sa MEDCouplingUMesh::checkConsecutiveCellTypesAndOrder
5948 bool MEDCouplingUMesh::checkConsecutiveCellTypesForMEDFileFrmt() const
5950 return checkConsecutiveCellTypesAndOrder(MEDMEM_ORDER,MEDMEM_ORDER+N_MEDMEM_ORDER);
5954 * This method performs the same job as checkConsecutiveCellTypes except that the order of types sequence is analyzed to check
5955 * that the order is specified in array defined by [ \a orderBg , \a orderEnd ).
5956 * If there is some geo types in \a this \b NOT in [ \a orderBg, \a orderEnd ) it is OK (return true) if contiguous.
5957 * If there is some geo types in [ \a orderBg, \a orderEnd ) \b NOT in \a this it is OK too (return true) if contiguous.
5959 bool MEDCouplingUMesh::checkConsecutiveCellTypesAndOrder(const INTERP_KERNEL::NormalizedCellType *orderBg, const INTERP_KERNEL::NormalizedCellType *orderEnd) const
5961 checkFullyDefined();
5962 const int *conn=_nodal_connec->begin();
5963 const int *connI=_nodal_connec_index->begin();
5964 int nbOfCells=getNumberOfCells();
5968 std::set<INTERP_KERNEL::NormalizedCellType> sg;
5969 for(const int *i=connI;i!=connI+nbOfCells;)
5971 INTERP_KERNEL::NormalizedCellType curType=(INTERP_KERNEL::NormalizedCellType)conn[*i];
5972 const INTERP_KERNEL::NormalizedCellType *isTypeExists=std::find(orderBg,orderEnd,curType);
5973 if(isTypeExists!=orderEnd)
5975 int pos=(int)std::distance(orderBg,isTypeExists);
5979 i=std::find_if(i+1,connI+nbOfCells,MEDCouplingImpl::ConnReader(conn,(int)curType));
5983 if(sg.find(curType)==sg.end())
5985 i=std::find_if(i+1,connI+nbOfCells,MEDCouplingImpl::ConnReader(conn,(int)curType));
5996 * This method returns 2 newly allocated DataArrayInt instances. The first is an array of size 'this->getNumberOfCells()' with one component,
5997 * that tells for each cell the pos of its type in the array on type given in input parameter. The 2nd output parameter is an array with the same
5998 * number of tuples than input type array and with one component. This 2nd output array gives type by type the number of occurrence of type in 'this'.
6000 DataArrayInt *MEDCouplingUMesh::getLevArrPerCellTypes(const INTERP_KERNEL::NormalizedCellType *orderBg, const INTERP_KERNEL::NormalizedCellType *orderEnd, DataArrayInt *&nbPerType) const
6002 checkConnectivityFullyDefined();
6003 int nbOfCells=getNumberOfCells();
6004 const int *conn=_nodal_connec->begin();
6005 const int *connI=_nodal_connec_index->begin();
6006 MCAuto<DataArrayInt> tmpa=DataArrayInt::New();
6007 MCAuto<DataArrayInt> tmpb=DataArrayInt::New();
6008 tmpa->alloc(nbOfCells,1);
6009 tmpb->alloc((int)std::distance(orderBg,orderEnd),1);
6010 tmpb->fillWithZero();
6011 int *tmp=tmpa->getPointer();
6012 int *tmp2=tmpb->getPointer();
6013 for(const int *i=connI;i!=connI+nbOfCells;i++)
6015 const INTERP_KERNEL::NormalizedCellType *where=std::find(orderBg,orderEnd,(INTERP_KERNEL::NormalizedCellType)conn[*i]);
6018 int pos=(int)std::distance(orderBg,where);
6020 tmp[std::distance(connI,i)]=pos;
6024 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)conn[*i]);
6025 std::ostringstream oss; oss << "MEDCouplingUMesh::getLevArrPerCellTypes : Cell #" << std::distance(connI,i);
6026 oss << " has a type " << cm.getRepr() << " not in input array of type !";
6027 throw INTERP_KERNEL::Exception(oss.str());
6030 nbPerType=tmpb.retn();
6035 * This method behaves exactly as MEDCouplingUMesh::getRenumArrForConsecutiveCellTypesSpec but the order is those defined in MED file spec.
6037 * \return a new object containing the old to new correspondence.
6039 * \sa MEDCouplingUMesh::getRenumArrForConsecutiveCellTypesSpec, MEDCouplingUMesh::sortCellsInMEDFileFrmt.
6041 DataArrayInt *MEDCouplingUMesh::getRenumArrForMEDFileFrmt() const
6043 return getRenumArrForConsecutiveCellTypesSpec(MEDMEM_ORDER,MEDMEM_ORDER+N_MEDMEM_ORDER);
6047 * This method is similar to method MEDCouplingUMesh::rearrange2ConsecutiveCellTypes except that the type order is specified by [ \a orderBg , \a orderEnd ) (as MEDCouplingUMesh::checkConsecutiveCellTypesAndOrder method) and that this method is \b const and performs \b NO permutation in \a this.
6048 * This method returns an array of size getNumberOfCells() that gives a renumber array old2New that can be used as input of MEDCouplingMesh::renumberCells.
6049 * The mesh after this call to MEDCouplingMesh::renumberCells will pass the test of MEDCouplingUMesh::checkConsecutiveCellTypesAndOrder with the same inputs.
6050 * The returned array minimizes the permutations that is to say the order of cells inside same geometric type remains the same.
6052 DataArrayInt *MEDCouplingUMesh::getRenumArrForConsecutiveCellTypesSpec(const INTERP_KERNEL::NormalizedCellType *orderBg, const INTERP_KERNEL::NormalizedCellType *orderEnd) const
6054 DataArrayInt *nbPerType=0;
6055 MCAuto<DataArrayInt> tmpa=getLevArrPerCellTypes(orderBg,orderEnd,nbPerType);
6056 nbPerType->decrRef();
6057 return tmpa->buildPermArrPerLevel();
6061 * This method reorganize the cells of \a this so that the cells with same geometric types are put together.
6062 * The number of cells remains unchanged after the call of this method.
6063 * This method tries to minimizes the number of needed permutations. So, this method behaves not exactly as
6064 * MEDCouplingUMesh::sortCellsInMEDFileFrmt.
6066 * \return the array giving the correspondence old to new.
6068 DataArrayInt *MEDCouplingUMesh::rearrange2ConsecutiveCellTypes()
6070 checkFullyDefined();
6072 const int *conn=_nodal_connec->begin();
6073 const int *connI=_nodal_connec_index->begin();
6074 int nbOfCells=getNumberOfCells();
6075 std::vector<INTERP_KERNEL::NormalizedCellType> types;
6076 for(const int *i=connI;i!=connI+nbOfCells && (types.size()!=_types.size());)
6077 if(std::find(types.begin(),types.end(),(INTERP_KERNEL::NormalizedCellType)conn[*i])==types.end())
6079 INTERP_KERNEL::NormalizedCellType curType=(INTERP_KERNEL::NormalizedCellType)conn[*i];
6080 types.push_back(curType);
6081 for(i++;i!=connI+nbOfCells && (INTERP_KERNEL::NormalizedCellType)conn[*i]==curType;i++);
6083 DataArrayInt *ret=DataArrayInt::New();
6084 ret->alloc(nbOfCells,1);
6085 int *retPtr=ret->getPointer();
6086 std::fill(retPtr,retPtr+nbOfCells,-1);
6088 for(std::vector<INTERP_KERNEL::NormalizedCellType>::const_iterator iter=types.begin();iter!=types.end();iter++)
6090 for(const int *i=connI;i!=connI+nbOfCells;i++)
6091 if((INTERP_KERNEL::NormalizedCellType)conn[*i]==(*iter))
6092 retPtr[std::distance(connI,i)]=newCellId++;
6094 renumberCells(retPtr,false);
6099 * This method splits \a this into as mush as untructured meshes that consecutive set of same type cells.
6100 * So this method has typically a sense if MEDCouplingUMesh::checkConsecutiveCellTypes has a sense.
6101 * This method makes asumption that connectivity is correctly set before calling.
6103 std::vector<MEDCouplingUMesh *> MEDCouplingUMesh::splitByType() const
6105 checkConnectivityFullyDefined();
6106 const int *conn=_nodal_connec->begin();
6107 const int *connI=_nodal_connec_index->begin();
6108 int nbOfCells=getNumberOfCells();
6109 std::vector<MEDCouplingUMesh *> ret;
6110 for(const int *i=connI;i!=connI+nbOfCells;)
6112 INTERP_KERNEL::NormalizedCellType curType=(INTERP_KERNEL::NormalizedCellType)conn[*i];
6113 int beginCellId=(int)std::distance(connI,i);
6114 i=std::find_if(i+1,connI+nbOfCells,MEDCouplingImpl::ConnReader(conn,(int)curType));
6115 int endCellId=(int)std::distance(connI,i);
6116 int sz=endCellId-beginCellId;
6117 int *cells=new int[sz];
6118 for(int j=0;j<sz;j++)
6119 cells[j]=beginCellId+j;
6120 MEDCouplingUMesh *m=(MEDCouplingUMesh *)buildPartOfMySelf(cells,cells+sz,true);
6128 * This method performs the opposite operation than those in MEDCoupling1SGTUMesh::buildUnstructured.
6129 * If \a this is a single geometric type unstructured mesh, it will be converted into a more compact data structure,
6130 * MEDCoupling1GTUMesh instance. The returned instance will aggregate the same DataArrayDouble instance of coordinates than \a this.
6132 * \return a newly allocated instance, that the caller must manage.
6133 * \throw If \a this contains more than one geometric type.
6134 * \throw If the nodal connectivity of \a this is not fully defined.
6135 * \throw If the internal data is not coherent.
6137 MEDCoupling1GTUMesh *MEDCouplingUMesh::convertIntoSingleGeoTypeMesh() const
6139 checkConnectivityFullyDefined();
6140 if(_types.size()!=1)
6141 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertIntoSingleGeoTypeMesh : current mesh does not contain exactly one geometric type !");
6142 INTERP_KERNEL::NormalizedCellType typ=*_types.begin();
6143 MCAuto<MEDCoupling1GTUMesh> ret=MEDCoupling1GTUMesh::New(getName(),typ);
6144 ret->setCoords(getCoords());
6145 MEDCoupling1SGTUMesh *retC=dynamic_cast<MEDCoupling1SGTUMesh *>((MEDCoupling1GTUMesh*)ret);
6148 MCAuto<DataArrayInt> c=convertNodalConnectivityToStaticGeoTypeMesh();
6149 retC->setNodalConnectivity(c);
6153 MEDCoupling1DGTUMesh *retD=dynamic_cast<MEDCoupling1DGTUMesh *>((MEDCoupling1GTUMesh*)ret);
6155 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertIntoSingleGeoTypeMesh : Internal error !");
6156 DataArrayInt *c=0,*ci=0;
6157 convertNodalConnectivityToDynamicGeoTypeMesh(c,ci);
6158 MCAuto<DataArrayInt> cs(c),cis(ci);
6159 retD->setNodalConnectivity(cs,cis);
6164 DataArrayInt *MEDCouplingUMesh::convertNodalConnectivityToStaticGeoTypeMesh() const
6166 checkConnectivityFullyDefined();
6167 if(_types.size()!=1)
6168 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertNodalConnectivityToStaticGeoTypeMesh : current mesh does not contain exactly one geometric type !");
6169 INTERP_KERNEL::NormalizedCellType typ=*_types.begin();
6170 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(typ);
6173 std::ostringstream oss; oss << "MEDCouplingUMesh::convertNodalConnectivityToStaticGeoTypeMesh : this contains a single geo type (" << cm.getRepr() << ") but ";
6174 oss << "this type is dynamic ! Only static geometric type is possible for that type ! call convertNodalConnectivityToDynamicGeoTypeMesh instead !";
6175 throw INTERP_KERNEL::Exception(oss.str());
6177 int nbCells=getNumberOfCells();
6179 int nbNodesPerCell=(int)cm.getNumberOfNodes();
6180 MCAuto<DataArrayInt> connOut=DataArrayInt::New(); connOut->alloc(nbCells*nbNodesPerCell,1);
6181 int *outPtr=connOut->getPointer();
6182 const int *conn=_nodal_connec->begin();
6183 const int *connI=_nodal_connec_index->begin();
6185 for(int i=0;i<nbCells;i++,connI++)
6187 if(conn[connI[0]]==typi && connI[1]-connI[0]==nbNodesPerCell)
6188 outPtr=std::copy(conn+connI[0]+1,conn+connI[1],outPtr);
6191 std::ostringstream oss; oss << "MEDCouplingUMesh::convertNodalConnectivityToStaticGeoTypeMesh : there something wrong in cell #" << i << " ! The type of cell is not those expected, or the length of nodal connectivity is not those expected (" << nbNodesPerCell-1 << ") !";
6192 throw INTERP_KERNEL::Exception(oss.str());
6195 return connOut.retn();
6199 * Convert the nodal connectivity of the mesh so that all the cells are of dynamic types (polygon or quadratic
6200 * polygon). This returns the corresponding new nodal connectivity in \ref numbering-indirect format.
6204 void MEDCouplingUMesh::convertNodalConnectivityToDynamicGeoTypeMesh(DataArrayInt *&nodalConn, DataArrayInt *&nodalConnIndex) const
6206 static const char msg0[]="MEDCouplingUMesh::convertNodalConnectivityToDynamicGeoTypeMesh : nodal connectivity in this are invalid ! Call checkConsistency !";
6207 checkConnectivityFullyDefined();
6208 if(_types.size()!=1)
6209 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::convertNodalConnectivityToDynamicGeoTypeMesh : current mesh does not contain exactly one geometric type !");
6210 int nbCells=getNumberOfCells(),lgth=_nodal_connec->getNumberOfTuples();
6212 throw INTERP_KERNEL::Exception(msg0);
6213 MCAuto<DataArrayInt> c(DataArrayInt::New()),ci(DataArrayInt::New());
6214 c->alloc(lgth-nbCells,1); ci->alloc(nbCells+1,1);
6215 int *cp(c->getPointer()),*cip(ci->getPointer());
6216 const int *incp(_nodal_connec->begin()),*incip(_nodal_connec_index->begin());
6218 for(int i=0;i<nbCells;i++,cip++,incip++)
6220 int strt(incip[0]+1),stop(incip[1]);//+1 to skip geo type
6221 int delta(stop-strt);
6224 if((strt>=0 && strt<lgth) && (stop>=0 && stop<=lgth))
6225 cp=std::copy(incp+strt,incp+stop,cp);
6227 throw INTERP_KERNEL::Exception(msg0);
6230 throw INTERP_KERNEL::Exception(msg0);
6231 cip[1]=cip[0]+delta;
6233 nodalConn=c.retn(); nodalConnIndex=ci.retn();
6237 * This method takes in input a vector of MEDCouplingUMesh instances lying on the same coordinates with same mesh dimensions.
6238 * Each mesh in \b ms must be sorted by type with the same order (typically using MEDCouplingUMesh::sortCellsInMEDFileFrmt).
6239 * This method is particularly useful for MED file interaction. It allows to aggregate several meshes and keeping the type sorting
6240 * and the track of the permutation by chunk of same geotype cells to retrieve it. The traditional formats old2new and new2old
6241 * are not used here to avoid the build of big permutation array.
6243 * \param [in] ms meshes with same mesh dimension lying on the same coords and sorted by type following de the same geometric type order than
6244 * those specified in MEDCouplingUMesh::sortCellsInMEDFileFrmt method.
6245 * \param [out] szOfCellGrpOfSameType is a newly allocated DataArrayInt instance whose number of tuples is equal to the number of chunks of same geotype
6246 * in all meshes in \b ms. The accumulation of all values of this array is equal to the number of cells of returned mesh.
6247 * \param [out] idInMsOfCellGrpOfSameType is a newly allocated DataArrayInt instance having the same size than \b szOfCellGrpOfSameType. This
6248 * output array gives for each chunck of same type the corresponding mesh id in \b ms.
6249 * \return A newly allocated unstructured mesh that is the result of the aggregation on same coords of all meshes in \b ms. This returned mesh
6250 * is sorted by type following the geo cell types order of MEDCouplingUMesh::sortCellsInMEDFileFrmt method.
6252 MEDCouplingUMesh *MEDCouplingUMesh::AggregateSortedByTypeMeshesOnSameCoords(const std::vector<const MEDCouplingUMesh *>& ms,
6253 DataArrayInt *&szOfCellGrpOfSameType,
6254 DataArrayInt *&idInMsOfCellGrpOfSameType)
6256 std::vector<const MEDCouplingUMesh *> ms2;
6257 for(std::vector<const MEDCouplingUMesh *>::const_iterator it=ms.begin();it!=ms.end();it++)
6260 (*it)->checkConnectivityFullyDefined();
6264 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::AggregateSortedByTypeMeshesOnSameCoords : input vector is empty !");
6265 const DataArrayDouble *refCoo=ms2[0]->getCoords();
6266 int meshDim=ms2[0]->getMeshDimension();
6267 std::vector<const MEDCouplingUMesh *> m1ssm;
6268 std::vector< MCAuto<MEDCouplingUMesh> > m1ssmAuto;
6270 std::vector<const MEDCouplingUMesh *> m1ssmSingle;
6271 std::vector< MCAuto<MEDCouplingUMesh> > m1ssmSingleAuto;
6273 MCAuto<DataArrayInt> ret1(DataArrayInt::New()),ret2(DataArrayInt::New());
6274 ret1->alloc(0,1); ret2->alloc(0,1);
6275 for(std::vector<const MEDCouplingUMesh *>::const_iterator it=ms2.begin();it!=ms2.end();it++,rk++)
6277 if(meshDim!=(*it)->getMeshDimension())
6278 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::AggregateSortedByTypeMeshesOnSameCoords : meshdims mismatch !");
6279 if(refCoo!=(*it)->getCoords())
6280 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::AggregateSortedByTypeMeshesOnSameCoords : meshes are not shared by a single coordinates coords !");
6281 std::vector<MEDCouplingUMesh *> sp=(*it)->splitByType();
6282 std::copy(sp.begin(),sp.end(),std::back_insert_iterator< std::vector<const MEDCouplingUMesh *> >(m1ssm));
6283 std::copy(sp.begin(),sp.end(),std::back_insert_iterator< std::vector<MCAuto<MEDCouplingUMesh> > >(m1ssmAuto));
6284 for(std::vector<MEDCouplingUMesh *>::const_iterator it2=sp.begin();it2!=sp.end();it2++)
6286 MEDCouplingUMesh *singleCell=static_cast<MEDCouplingUMesh *>((*it2)->buildPartOfMySelf(&fake,&fake+1,true));
6287 m1ssmSingleAuto.push_back(singleCell);
6288 m1ssmSingle.push_back(singleCell);
6289 ret1->pushBackSilent((*it2)->getNumberOfCells()); ret2->pushBackSilent(rk);
6292 MCAuto<MEDCouplingUMesh> m1ssmSingle2=MEDCouplingUMesh::MergeUMeshesOnSameCoords(m1ssmSingle);
6293 MCAuto<DataArrayInt> renum=m1ssmSingle2->sortCellsInMEDFileFrmt();
6294 std::vector<const MEDCouplingUMesh *> m1ssmfinal(m1ssm.size());
6295 for(std::size_t i=0;i<m1ssm.size();i++)
6296 m1ssmfinal[renum->getIJ(i,0)]=m1ssm[i];
6297 MCAuto<MEDCouplingUMesh> ret0=MEDCouplingUMesh::MergeUMeshesOnSameCoords(m1ssmfinal);
6298 szOfCellGrpOfSameType=ret1->renumber(renum->begin());
6299 idInMsOfCellGrpOfSameType=ret2->renumber(renum->begin());
6304 * This method returns a newly created DataArrayInt instance.
6305 * This method retrieves cell ids in [ \a begin, \a end ) that have the type \a type.
6307 DataArrayInt *MEDCouplingUMesh::keepCellIdsByType(INTERP_KERNEL::NormalizedCellType type, const int *begin, const int *end) const
6309 checkFullyDefined();
6310 const int *conn=_nodal_connec->begin();
6311 const int *connIndex=_nodal_connec_index->begin();
6312 MCAuto<DataArrayInt> ret(DataArrayInt::New()); ret->alloc(0,1);
6313 for(const int *w=begin;w!=end;w++)
6314 if((INTERP_KERNEL::NormalizedCellType)conn[connIndex[*w]]==type)
6315 ret->pushBackSilent(*w);
6320 * This method makes the assumption that da->getNumberOfTuples()<this->getNumberOfCells(). This method makes the assumption that ids contained in 'da'
6321 * are in [0:getNumberOfCells())
6323 DataArrayInt *MEDCouplingUMesh::convertCellArrayPerGeoType(const DataArrayInt *da) const
6325 checkFullyDefined();
6326 const int *conn=_nodal_connec->begin();
6327 const int *connI=_nodal_connec_index->begin();
6328 int nbOfCells=getNumberOfCells();
6329 std::set<INTERP_KERNEL::NormalizedCellType> types(getAllGeoTypes());
6330 int *tmp=new int[nbOfCells];
6331 for(std::set<INTERP_KERNEL::NormalizedCellType>::const_iterator iter=types.begin();iter!=types.end();iter++)
6334 for(const int *i=connI;i!=connI+nbOfCells;i++)
6335 if((INTERP_KERNEL::NormalizedCellType)conn[*i]==(*iter))
6336 tmp[std::distance(connI,i)]=j++;
6338 DataArrayInt *ret=DataArrayInt::New();
6339 ret->alloc(da->getNumberOfTuples(),da->getNumberOfComponents());
6340 ret->copyStringInfoFrom(*da);
6341 int *retPtr=ret->getPointer();
6342 const int *daPtr=da->begin();
6343 int nbOfElems=da->getNbOfElems();
6344 for(int k=0;k<nbOfElems;k++)
6345 retPtr[k]=tmp[daPtr[k]];
6351 * This method reduced number of cells of this by keeping cells whose type is different from 'type' and if type=='type'
6352 * This method \b works \b for mesh sorted by type.
6353 * cells whose ids is in 'idsPerGeoType' array.
6354 * This method conserves coords and name of mesh.
6356 MEDCouplingUMesh *MEDCouplingUMesh::keepSpecifiedCells(INTERP_KERNEL::NormalizedCellType type, const int *idsPerGeoTypeBg, const int *idsPerGeoTypeEnd) const
6358 std::vector<int> code=getDistributionOfTypes();
6359 std::size_t nOfTypesInThis=code.size()/3;
6360 int sz=0,szOfType=0;
6361 for(std::size_t i=0;i<nOfTypesInThis;i++)
6366 szOfType=code[3*i+1];
6368 for(const int *work=idsPerGeoTypeBg;work!=idsPerGeoTypeEnd;work++)
6369 if(*work<0 || *work>=szOfType)
6371 std::ostringstream oss; oss << "MEDCouplingUMesh::keepSpecifiedCells : Request on type " << type << " at place #" << std::distance(idsPerGeoTypeBg,work) << " value " << *work;
6372 oss << ". It should be in [0," << szOfType << ") !";
6373 throw INTERP_KERNEL::Exception(oss.str());
6375 MCAuto<DataArrayInt> idsTokeep=DataArrayInt::New(); idsTokeep->alloc(sz+(int)std::distance(idsPerGeoTypeBg,idsPerGeoTypeEnd),1);
6376 int *idsPtr=idsTokeep->getPointer();
6378 for(std::size_t i=0;i<nOfTypesInThis;i++)
6381 for(int j=0;j<code[3*i+1];j++)
6384 idsPtr=std::transform(idsPerGeoTypeBg,idsPerGeoTypeEnd,idsPtr,std::bind2nd(std::plus<int>(),offset));
6385 offset+=code[3*i+1];
6387 MCAuto<MEDCouplingUMesh> ret=static_cast<MEDCouplingUMesh *>(buildPartOfMySelf(idsTokeep->begin(),idsTokeep->end(),true));
6388 ret->copyTinyInfoFrom(this);
6393 * This method returns a vector of size 'this->getNumberOfCells()'.
6394 * This method retrieves for each cell in \a this if it is linear (false) or quadratic(true).
6396 std::vector<bool> MEDCouplingUMesh::getQuadraticStatus() const
6398 int ncell=getNumberOfCells();
6399 std::vector<bool> ret(ncell);
6400 const int *cI=getNodalConnectivityIndex()->begin();
6401 const int *c=getNodalConnectivity()->begin();
6402 for(int i=0;i<ncell;i++)
6404 INTERP_KERNEL::NormalizedCellType typ=(INTERP_KERNEL::NormalizedCellType)c[cI[i]];
6405 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel(typ);
6406 ret[i]=cm.isQuadratic();
6412 * Returns a newly created mesh (with ref count ==1) that contains merge of \a this and \a other.
6414 MEDCouplingMesh *MEDCouplingUMesh::mergeMyselfWith(const MEDCouplingMesh *other) const
6416 if(other->getType()!=UNSTRUCTURED)
6417 throw INTERP_KERNEL::Exception("Merge of umesh only available with umesh each other !");
6418 const MEDCouplingUMesh *otherC=static_cast<const MEDCouplingUMesh *>(other);
6419 return MergeUMeshes(this,otherC);
6423 * Returns a new DataArrayDouble holding barycenters of all cells. The barycenter is
6424 * computed by averaging coordinates of cell nodes, so this method is not a right
6425 * choice for degenerated meshes (not well oriented, cells with measure close to zero).
6426 * \return DataArrayDouble * - a new instance of DataArrayDouble, of size \a
6427 * this->getNumberOfCells() tuples per \a this->getSpaceDimension()
6428 * components. The caller is to delete this array using decrRef() as it is
6430 * \throw If the coordinates array is not set.
6431 * \throw If the nodal connectivity of cells is not defined.
6432 * \sa MEDCouplingUMesh::computeIsoBarycenterOfNodesPerCell
6434 DataArrayDouble *MEDCouplingUMesh::computeCellCenterOfMass() const
6436 MCAuto<DataArrayDouble> ret=DataArrayDouble::New();
6437 int spaceDim=getSpaceDimension();
6438 int nbOfCells=getNumberOfCells();
6439 ret->alloc(nbOfCells,spaceDim);
6440 ret->copyStringInfoFrom(*getCoords());
6441 double *ptToFill=ret->getPointer();
6442 const int *nodal=_nodal_connec->begin();
6443 const int *nodalI=_nodal_connec_index->begin();
6444 const double *coor=_coords->begin();
6445 for(int i=0;i<nbOfCells;i++)
6447 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)nodal[nodalI[i]];
6448 INTERP_KERNEL::computeBarycenter2<int,INTERP_KERNEL::ALL_C_MODE>(type,nodal+nodalI[i]+1,nodalI[i+1]-nodalI[i]-1,coor,spaceDim,ptToFill);
6455 * This method computes for each cell in \a this, the location of the iso barycenter of nodes constituting
6456 * the cell. Contrary to badly named MEDCouplingUMesh::computeCellCenterOfMass method that returns the center of inertia of the
6458 * \return a newly allocated DataArrayDouble instance that the caller has to deal with. The returned
6459 * DataArrayDouble instance will have \c this->getNumberOfCells() tuples and \c this->getSpaceDimension() components.
6461 * \sa MEDCouplingUMesh::computeCellCenterOfMass
6462 * \throw If \a this is not fully defined (coordinates and connectivity)
6463 * \throw If there is presence in nodal connectivity in \a this of node ids not in [0, \c this->getNumberOfNodes() )
6465 DataArrayDouble *MEDCouplingUMesh::computeIsoBarycenterOfNodesPerCell() const
6467 checkFullyDefined();
6468 MCAuto<DataArrayDouble> ret=DataArrayDouble::New();
6469 int spaceDim=getSpaceDimension();
6470 int nbOfCells=getNumberOfCells();
6471 int nbOfNodes=getNumberOfNodes();
6472 ret->alloc(nbOfCells,spaceDim);
6473 double *ptToFill=ret->getPointer();
6474 const int *nodal=_nodal_connec->begin();
6475 const int *nodalI=_nodal_connec_index->begin();
6476 const double *coor=_coords->begin();
6477 for(int i=0;i<nbOfCells;i++,ptToFill+=spaceDim)
6479 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)nodal[nodalI[i]];
6480 std::fill(ptToFill,ptToFill+spaceDim,0.);
6481 if(type!=INTERP_KERNEL::NORM_POLYHED)
6483 for(const int *conn=nodal+nodalI[i]+1;conn!=nodal+nodalI[i+1];conn++)
6485 if(*conn>=0 && *conn<nbOfNodes)
6486 std::transform(coor+spaceDim*conn[0],coor+spaceDim*(conn[0]+1),ptToFill,ptToFill,std::plus<double>());
6489 std::ostringstream oss; oss << "MEDCouplingUMesh::computeIsoBarycenterOfNodesPerCell : on cell #" << i << " presence of nodeId #" << *conn << " should be in [0," << nbOfNodes << ") !";
6490 throw INTERP_KERNEL::Exception(oss.str());
6493 int nbOfNodesInCell=nodalI[i+1]-nodalI[i]-1;
6494 if(nbOfNodesInCell>0)
6495 std::transform(ptToFill,ptToFill+spaceDim,ptToFill,std::bind2nd(std::multiplies<double>(),1./(double)nbOfNodesInCell));
6498 std::ostringstream oss; oss << "MEDCouplingUMesh::computeIsoBarycenterOfNodesPerCell : on cell #" << i << " presence of cell with no nodes !";
6499 throw INTERP_KERNEL::Exception(oss.str());
6504 std::set<int> s(nodal+nodalI[i]+1,nodal+nodalI[i+1]);
6506 for(std::set<int>::const_iterator it=s.begin();it!=s.end();it++)
6508 if(*it>=0 && *it<nbOfNodes)
6509 std::transform(coor+spaceDim*(*it),coor+spaceDim*((*it)+1),ptToFill,ptToFill,std::plus<double>());
6512 std::ostringstream oss; oss << "MEDCouplingUMesh::computeIsoBarycenterOfNodesPerCell : on cell polyhedron cell #" << i << " presence of nodeId #" << *it << " should be in [0," << nbOfNodes << ") !";
6513 throw INTERP_KERNEL::Exception(oss.str());
6517 std::transform(ptToFill,ptToFill+spaceDim,ptToFill,std::bind2nd(std::multiplies<double>(),1./(double)s.size()));
6520 std::ostringstream oss; oss << "MEDCouplingUMesh::computeIsoBarycenterOfNodesPerCell : on polyhedron cell #" << i << " there are no nodes !";
6521 throw INTERP_KERNEL::Exception(oss.str());
6529 * Returns a new DataArrayDouble holding barycenters of specified cells. The
6530 * barycenter is computed by averaging coordinates of cell nodes. The cells to treat
6531 * are specified via an array of cell ids.
6532 * \warning Validity of the specified cell ids is not checked!
6533 * Valid range is [ 0, \a this->getNumberOfCells() ).
6534 * \param [in] begin - an array of cell ids of interest.
6535 * \param [in] end - the end of \a begin, i.e. a pointer to its (last+1)-th element.
6536 * \return DataArrayDouble * - a new instance of DataArrayDouble, of size ( \a
6537 * end - \a begin ) tuples per \a this->getSpaceDimension() components. The
6538 * caller is to delete this array using decrRef() as it is no more needed.
6539 * \throw If the coordinates array is not set.
6540 * \throw If the nodal connectivity of cells is not defined.
6542 * \if ENABLE_EXAMPLES
6543 * \ref cpp_mcumesh_getPartBarycenterAndOwner "Here is a C++ example".<br>
6544 * \ref py_mcumesh_getPartBarycenterAndOwner "Here is a Python example".
6547 DataArrayDouble *MEDCouplingUMesh::getPartBarycenterAndOwner(const int *begin, const int *end) const
6549 DataArrayDouble *ret=DataArrayDouble::New();
6550 int spaceDim=getSpaceDimension();
6551 int nbOfTuple=(int)std::distance(begin,end);
6552 ret->alloc(nbOfTuple,spaceDim);
6553 double *ptToFill=ret->getPointer();
6554 double *tmp=new double[spaceDim];
6555 const int *nodal=_nodal_connec->begin();
6556 const int *nodalI=_nodal_connec_index->begin();
6557 const double *coor=_coords->begin();
6558 for(const int *w=begin;w!=end;w++)
6560 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)nodal[nodalI[*w]];
6561 INTERP_KERNEL::computeBarycenter2<int,INTERP_KERNEL::ALL_C_MODE>(type,nodal+nodalI[*w]+1,nodalI[*w+1]-nodalI[*w]-1,coor,spaceDim,ptToFill);
6569 * Returns a DataArrayDouble instance giving for each cell in \a this the equation of plane given by "a*X+b*Y+c*Z+d=0".
6570 * So the returned instance will have 4 components and \c this->getNumberOfCells() tuples.
6571 * So this method expects that \a this has a spaceDimension equal to 3 and meshDimension equal to 2.
6572 * The computation of the plane equation is done using each time the 3 first nodes of 2D cells.
6573 * This method is useful to detect 2D cells in 3D space that are not coplanar.
6575 * \return DataArrayDouble * - a new instance of DataArrayDouble having 4 components and a number of tuples equal to number of cells in \a this.
6576 * \throw If spaceDim!=3 or meshDim!=2.
6577 * \throw If connectivity of \a this is invalid.
6578 * \throw If connectivity of a cell in \a this points to an invalid node.
6580 DataArrayDouble *MEDCouplingUMesh::computePlaneEquationOf3DFaces() const
6582 MCAuto<DataArrayDouble> ret(DataArrayDouble::New());
6583 int nbOfCells(getNumberOfCells()),nbOfNodes(getNumberOfNodes());
6584 if(getSpaceDimension()!=3 || getMeshDimension()!=2)
6585 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::computePlaneEquationOf3DFaces : This method must be applied on a mesh having meshDimension equal 2 and a spaceDimension equal to 3 !");
6586 ret->alloc(nbOfCells,4);
6587 double *retPtr(ret->getPointer());
6588 const int *nodal(_nodal_connec->begin()),*nodalI(_nodal_connec_index->begin());
6589 const double *coor(_coords->begin());
6590 for(int i=0;i<nbOfCells;i++,nodalI++,retPtr+=4)
6592 double matrix[16]={0,0,0,1,0,0,0,1,0,0,0,1,1,1,1,0},matrix2[16];
6593 if(nodalI[1]-nodalI[0]>=4)
6595 double aa[3]={coor[nodal[nodalI[0]+1+1]*3+0]-coor[nodal[nodalI[0]+1+0]*3+0],
6596 coor[nodal[nodalI[0]+1+1]*3+1]-coor[nodal[nodalI[0]+1+0]*3+1],
6597 coor[nodal[nodalI[0]+1+1]*3+2]-coor[nodal[nodalI[0]+1+0]*3+2]}
6598 ,bb[3]={coor[nodal[nodalI[0]+1+2]*3+0]-coor[nodal[nodalI[0]+1+0]*3+0],
6599 coor[nodal[nodalI[0]+1+2]*3+1]-coor[nodal[nodalI[0]+1+0]*3+1],
6600 coor[nodal[nodalI[0]+1+2]*3+2]-coor[nodal[nodalI[0]+1+0]*3+2]};
6601 double cc[3]={aa[1]*bb[2]-aa[2]*bb[1],aa[2]*bb[0]-aa[0]*bb[2],aa[0]*bb[1]-aa[1]*bb[0]};
6602 for(int j=0;j<3;j++)
6604 int nodeId(nodal[nodalI[0]+1+j]);
6605 if(nodeId>=0 && nodeId<nbOfNodes)
6606 std::copy(coor+nodeId*3,coor+(nodeId+1)*3,matrix+4*j);
6609 std::ostringstream oss; oss << "MEDCouplingUMesh::computePlaneEquationOf3DFaces : invalid 2D cell #" << i << " ! This cell points to an invalid nodeId : " << nodeId << " !";
6610 throw INTERP_KERNEL::Exception(oss.str());
6613 if(sqrt(cc[0]*cc[0]+cc[1]*cc[1]+cc[2]*cc[2])>1e-7)
6615 INTERP_KERNEL::inverseMatrix(matrix,4,matrix2);
6616 retPtr[0]=matrix2[3]; retPtr[1]=matrix2[7]; retPtr[2]=matrix2[11]; retPtr[3]=matrix2[15];
6620 if(nodalI[1]-nodalI[0]==4)
6622 std::ostringstream oss; oss << "MEDCouplingUMesh::computePlaneEquationOf3DFaces : cell" << i << " : Presence of The 3 colinear points !";
6623 throw INTERP_KERNEL::Exception(oss.str());
6626 double dd[3]={0.,0.,0.};
6627 for(int offset=nodalI[0]+1;offset<nodalI[1];offset++)
6628 std::transform(coor+3*nodal[offset],coor+3*(nodal[offset]+1),dd,dd,std::plus<double>());
6629 int nbOfNodesInCell(nodalI[1]-nodalI[0]-1);
6630 std::transform(dd,dd+3,dd,std::bind2nd(std::multiplies<double>(),1./(double)nbOfNodesInCell));
6631 std::copy(dd,dd+3,matrix+4*2);
6632 INTERP_KERNEL::inverseMatrix(matrix,4,matrix2);
6633 retPtr[0]=matrix2[3]; retPtr[1]=matrix2[7]; retPtr[2]=matrix2[11]; retPtr[3]=matrix2[15];
6638 std::ostringstream oss; oss << "MEDCouplingUMesh::computePlaneEquationOf3DFaces : invalid 2D cell #" << i << " ! Must be constitued by more than 3 nodes !";
6639 throw INTERP_KERNEL::Exception(oss.str());
6646 * This method expects as input a DataArrayDouble non nul instance 'da' that should be allocated. If not an exception is thrown.
6649 MEDCouplingUMesh *MEDCouplingUMesh::Build0DMeshFromCoords(DataArrayDouble *da)
6652 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::Build0DMeshFromCoords : instance of DataArrayDouble must be not null !");
6653 da->checkAllocated();
6654 std::string name(da->getName());
6655 MCAuto<MEDCouplingUMesh> ret(MEDCouplingUMesh::New(name,0));
6657 ret->setName("Mesh");
6659 int nbOfTuples(da->getNumberOfTuples());
6660 MCAuto<DataArrayInt> c(DataArrayInt::New()),cI(DataArrayInt::New());
6661 c->alloc(2*nbOfTuples,1);
6662 cI->alloc(nbOfTuples+1,1);
6663 int *cp(c->getPointer()),*cip(cI->getPointer());
6665 for(int i=0;i<nbOfTuples;i++)
6667 *cp++=INTERP_KERNEL::NORM_POINT1;
6671 ret->setConnectivity(c,cI,true);
6675 MCAuto<MEDCouplingUMesh> MEDCouplingUMesh::Build1DMeshFromCoords(DataArrayDouble *da)
6678 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::Build01MeshFromCoords : instance of DataArrayDouble must be not null !");
6679 da->checkAllocated();
6680 std::string name(da->getName());
6681 MCAuto<MEDCouplingUMesh> ret;
6683 MCAuto<MEDCouplingCMesh> tmp(MEDCouplingCMesh::New());
6684 MCAuto<DataArrayDouble> arr(DataArrayDouble::New());
6685 arr->alloc(da->getNumberOfTuples());
6686 tmp->setCoordsAt(0,arr);
6687 ret=tmp->buildUnstructured();
6691 ret->setName("Mesh");
6698 * Creates a new MEDCouplingUMesh by concatenating two given meshes of the same dimension.
6699 * Cells and nodes of
6700 * the first mesh precede cells and nodes of the second mesh within the result mesh.
6701 * \param [in] mesh1 - the first mesh.
6702 * \param [in] mesh2 - the second mesh.
6703 * \return MEDCouplingUMesh * - the result mesh. It is a new instance of
6704 * MEDCouplingUMesh. The caller is to delete this mesh using decrRef() as it
6705 * is no more needed.
6706 * \throw If \a mesh1 == NULL or \a mesh2 == NULL.
6707 * \throw If the coordinates array is not set in none of the meshes.
6708 * \throw If \a mesh1->getMeshDimension() < 0 or \a mesh2->getMeshDimension() < 0.
6709 * \throw If \a mesh1->getMeshDimension() != \a mesh2->getMeshDimension().
6711 MEDCouplingUMesh *MEDCouplingUMesh::MergeUMeshes(const MEDCouplingUMesh *mesh1, const MEDCouplingUMesh *mesh2)
6713 std::vector<const MEDCouplingUMesh *> tmp(2);
6714 tmp[0]=const_cast<MEDCouplingUMesh *>(mesh1); tmp[1]=const_cast<MEDCouplingUMesh *>(mesh2);
6715 return MergeUMeshes(tmp);
6719 * Creates a new MEDCouplingUMesh by concatenating all given meshes of the same dimension.
6720 * Cells and nodes of
6721 * the *i*-th mesh precede cells and nodes of the (*i*+1)-th mesh within the result mesh.
6722 * \param [in] a - a vector of meshes (MEDCouplingUMesh) to concatenate.
6723 * \return MEDCouplingUMesh * - the result mesh. It is a new instance of
6724 * MEDCouplingUMesh. The caller is to delete this mesh using decrRef() as it
6725 * is no more needed.
6726 * \throw If \a a.size() == 0.
6727 * \throw If \a a[ *i* ] == NULL.
6728 * \throw If the coordinates array is not set in none of the meshes.
6729 * \throw If \a a[ *i* ]->getMeshDimension() < 0.
6730 * \throw If the meshes in \a a are of different dimension (getMeshDimension()).
6732 MEDCouplingUMesh *MEDCouplingUMesh::MergeUMeshes(const std::vector<const MEDCouplingUMesh *>& a)
6734 std::size_t sz=a.size();
6736 return MergeUMeshesLL(a);
6737 for(std::size_t ii=0;ii<sz;ii++)
6740 std::ostringstream oss; oss << "MEDCouplingUMesh::MergeUMeshes : item #" << ii << " in input array of size "<< sz << " is empty !";
6741 throw INTERP_KERNEL::Exception(oss.str());
6743 std::vector< MCAuto<MEDCouplingUMesh> > bb(sz);
6744 std::vector< const MEDCouplingUMesh * > aa(sz);
6746 for(std::size_t i=0;i<sz && spaceDim==-3;i++)
6748 const MEDCouplingUMesh *cur=a[i];
6749 const DataArrayDouble *coo=cur->getCoords();
6751 spaceDim=coo->getNumberOfComponents();
6754 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::MergeUMeshes : no spaceDim specified ! unable to perform merge !");
6755 for(std::size_t i=0;i<sz;i++)
6757 bb[i]=a[i]->buildSetInstanceFromThis(spaceDim);
6760 return MergeUMeshesLL(aa);
6764 * Creates a new MEDCouplingUMesh by concatenating cells of two given meshes of same
6765 * dimension and sharing the node coordinates array.
6766 * All cells of the first mesh precede all cells of the second mesh
6767 * within the result mesh.
6768 * \param [in] mesh1 - the first mesh.
6769 * \param [in] mesh2 - the second mesh.
6770 * \return MEDCouplingUMesh * - the result mesh. It is a new instance of
6771 * MEDCouplingUMesh. The caller is to delete this mesh using decrRef() as it
6772 * is no more needed.
6773 * \throw If \a mesh1 == NULL or \a mesh2 == NULL.
6774 * \throw If the meshes do not share the node coordinates array.
6775 * \throw If \a mesh1->getMeshDimension() < 0 or \a mesh2->getMeshDimension() < 0.
6776 * \throw If \a mesh1->getMeshDimension() != \a mesh2->getMeshDimension().
6778 MEDCouplingUMesh *MEDCouplingUMesh::MergeUMeshesOnSameCoords(const MEDCouplingUMesh *mesh1, const MEDCouplingUMesh *mesh2)
6780 std::vector<const MEDCouplingUMesh *> tmp(2);
6781 tmp[0]=mesh1; tmp[1]=mesh2;
6782 return MergeUMeshesOnSameCoords(tmp);
6786 * Creates a new MEDCouplingUMesh by concatenating cells of all given meshes of same
6787 * dimension and sharing the node coordinates array.
6788 * All cells of the *i*-th mesh precede all cells of the
6789 * (*i*+1)-th mesh within the result mesh.
6790 * \param [in] meshes - a vector of meshes (MEDCouplingUMesh) to concatenate.
6791 * \return MEDCouplingUMesh * - the result mesh. It is a new instance of
6792 * MEDCouplingUMesh. The caller is to delete this mesh using decrRef() as it
6793 * is no more needed.
6794 * \throw If \a a.size() == 0.
6795 * \throw If \a a[ *i* ] == NULL.
6796 * \throw If the meshes do not share the node coordinates array.
6797 * \throw If \a a[ *i* ]->getMeshDimension() < 0.
6798 * \throw If the meshes in \a a are of different dimension (getMeshDimension()).
6800 MEDCouplingUMesh *MEDCouplingUMesh::MergeUMeshesOnSameCoords(const std::vector<const MEDCouplingUMesh *>& meshes)
6803 throw INTERP_KERNEL::Exception("meshes input parameter is expected to be non empty.");
6804 for(std::size_t ii=0;ii<meshes.size();ii++)
6807 std::ostringstream oss; oss << "MEDCouplingUMesh::MergeUMeshesOnSameCoords : item #" << ii << " in input array of size "<< meshes.size() << " is empty !";
6808 throw INTERP_KERNEL::Exception(oss.str());
6810 const DataArrayDouble *coords=meshes.front()->getCoords();
6811 int meshDim=meshes.front()->getMeshDimension();
6812 std::vector<const MEDCouplingUMesh *>::const_iterator iter=meshes.begin();
6814 int meshIndexLgth=0;
6815 for(;iter!=meshes.end();iter++)
6817 if(coords!=(*iter)->getCoords())
6818 throw INTERP_KERNEL::Exception("meshes does not share the same coords ! Try using tryToShareSameCoords method !");
6819 if(meshDim!=(*iter)->getMeshDimension())
6820 throw INTERP_KERNEL::Exception("Mesh dimensions mismatches, FuseUMeshesOnSameCoords impossible !");
6821 meshLgth+=(*iter)->getNodalConnectivityArrayLen();
6822 meshIndexLgth+=(*iter)->getNumberOfCells();
6824 MCAuto<DataArrayInt> nodal=DataArrayInt::New();
6825 nodal->alloc(meshLgth,1);
6826 int *nodalPtr=nodal->getPointer();
6827 MCAuto<DataArrayInt> nodalIndex=DataArrayInt::New();
6828 nodalIndex->alloc(meshIndexLgth+1,1);
6829 int *nodalIndexPtr=nodalIndex->getPointer();
6831 for(iter=meshes.begin();iter!=meshes.end();iter++)
6833 const int *nod=(*iter)->getNodalConnectivity()->begin();
6834 const int *index=(*iter)->getNodalConnectivityIndex()->begin();
6835 int nbOfCells=(*iter)->getNumberOfCells();
6836 int meshLgth2=(*iter)->getNodalConnectivityArrayLen();
6837 nodalPtr=std::copy(nod,nod+meshLgth2,nodalPtr);
6838 if(iter!=meshes.begin())
6839 nodalIndexPtr=std::transform(index+1,index+nbOfCells+1,nodalIndexPtr,std::bind2nd(std::plus<int>(),offset));
6841 nodalIndexPtr=std::copy(index,index+nbOfCells+1,nodalIndexPtr);
6844 MEDCouplingUMesh *ret=MEDCouplingUMesh::New();
6845 ret->setName("merge");
6846 ret->setMeshDimension(meshDim);
6847 ret->setConnectivity(nodal,nodalIndex,true);
6848 ret->setCoords(coords);
6853 * Creates a new MEDCouplingUMesh by concatenating cells of all given meshes of same
6854 * dimension and sharing the node coordinates array. Cells of the *i*-th mesh precede
6855 * cells of the (*i*+1)-th mesh within the result mesh. Duplicates of cells are
6856 * removed from \a this mesh and arrays mapping between new and old cell ids in "Old to
6857 * New" mode are returned for each input mesh.
6858 * \param [in] meshes - a vector of meshes (MEDCouplingUMesh) to concatenate.
6859 * \param [in] compType - specifies a cell comparison technique. For meaning of its
6860 * valid values [0,1,2], see zipConnectivityTraducer().
6861 * \param [in,out] corr - an array of DataArrayInt, of the same size as \a
6862 * meshes. The *i*-th array describes cell ids mapping for \a meshes[ *i* ]
6863 * mesh. The caller is to delete each of the arrays using decrRef() as it is
6865 * \return MEDCouplingUMesh * - the result mesh. It is a new instance of
6866 * MEDCouplingUMesh. The caller is to delete this mesh using decrRef() as it
6867 * is no more needed.
6868 * \throw If \a meshes.size() == 0.
6869 * \throw If \a meshes[ *i* ] == NULL.
6870 * \throw If the meshes do not share the node coordinates array.
6871 * \throw If \a meshes[ *i* ]->getMeshDimension() < 0.
6872 * \throw If the \a meshes are of different dimension (getMeshDimension()).
6873 * \throw If the nodal connectivity of cells of any of \a meshes is not defined.
6874 * \throw If the nodal connectivity any of \a meshes includes an invalid id.
6876 MEDCouplingUMesh *MEDCouplingUMesh::FuseUMeshesOnSameCoords(const std::vector<const MEDCouplingUMesh *>& meshes, int compType, std::vector<DataArrayInt *>& corr)
6878 //All checks are delegated to MergeUMeshesOnSameCoords
6879 MCAuto<MEDCouplingUMesh> ret=MergeUMeshesOnSameCoords(meshes);
6880 MCAuto<DataArrayInt> o2n=ret->zipConnectivityTraducer(compType);
6881 corr.resize(meshes.size());
6882 std::size_t nbOfMeshes=meshes.size();
6884 const int *o2nPtr=o2n->begin();
6885 for(std::size_t i=0;i<nbOfMeshes;i++)
6887 DataArrayInt *tmp=DataArrayInt::New();
6888 int curNbOfCells=meshes[i]->getNumberOfCells();
6889 tmp->alloc(curNbOfCells,1);
6890 std::copy(o2nPtr+offset,o2nPtr+offset+curNbOfCells,tmp->getPointer());
6891 offset+=curNbOfCells;
6892 tmp->setName(meshes[i]->getName());
6899 * Makes all given meshes share the nodal connectivity array. The common connectivity
6900 * array is created by concatenating the connectivity arrays of all given meshes. All
6901 * the given meshes must be of the same space dimension but dimension of cells **can
6902 * differ**. This method is particularly useful in MEDLoader context to build a \ref
6903 * MEDCoupling::MEDFileUMesh "MEDFileUMesh" instance that expects that underlying
6904 * MEDCouplingUMesh'es of different dimension share the same nodal connectivity array.
6905 * \param [in,out] meshes - a vector of meshes to update.
6906 * \throw If any of \a meshes is NULL.
6907 * \throw If the coordinates array is not set in any of \a meshes.
6908 * \throw If the nodal connectivity of cells is not defined in any of \a meshes.
6909 * \throw If \a meshes are of different space dimension.
6911 void MEDCouplingUMesh::PutUMeshesOnSameAggregatedCoords(const std::vector<MEDCouplingUMesh *>& meshes)
6913 std::size_t sz=meshes.size();
6916 std::vector< const DataArrayDouble * > coords(meshes.size());
6917 std::vector< const DataArrayDouble * >::iterator it2=coords.begin();
6918 for(std::vector<MEDCouplingUMesh *>::const_iterator it=meshes.begin();it!=meshes.end();it++,it2++)
6922 (*it)->checkConnectivityFullyDefined();
6923 const DataArrayDouble *coo=(*it)->getCoords();
6928 std::ostringstream oss; oss << " MEDCouplingUMesh::PutUMeshesOnSameAggregatedCoords : Item #" << std::distance(meshes.begin(),it) << " inside the vector of length " << meshes.size();
6929 oss << " has no coordinate array defined !";
6930 throw INTERP_KERNEL::Exception(oss.str());
6935 std::ostringstream oss; oss << " MEDCouplingUMesh::PutUMeshesOnSameAggregatedCoords : Item #" << std::distance(meshes.begin(),it) << " inside the vector of length " << meshes.size();
6936 oss << " is null !";
6937 throw INTERP_KERNEL::Exception(oss.str());
6940 MCAuto<DataArrayDouble> res=DataArrayDouble::Aggregate(coords);
6941 std::vector<MEDCouplingUMesh *>::const_iterator it=meshes.begin();
6942 int offset=(*it)->getNumberOfNodes();
6943 (*it++)->setCoords(res);
6944 for(;it!=meshes.end();it++)
6946 int oldNumberOfNodes=(*it)->getNumberOfNodes();
6947 (*it)->setCoords(res);
6948 (*it)->shiftNodeNumbersInConn(offset);
6949 offset+=oldNumberOfNodes;
6954 * Merges nodes coincident with a given precision within all given meshes that share
6955 * the nodal connectivity array. The given meshes **can be of different** mesh
6956 * dimension. This method is particularly useful in MEDLoader context to build a \ref
6957 * MEDCoupling::MEDFileUMesh "MEDFileUMesh" instance that expects that underlying
6958 * MEDCouplingUMesh'es of different dimension share the same nodal connectivity array.
6959 * \param [in,out] meshes - a vector of meshes to update.
6960 * \param [in] eps - the precision used to detect coincident nodes (infinite norm).
6961 * \throw If any of \a meshes is NULL.
6962 * \throw If the \a meshes do not share the same node coordinates array.
6963 * \throw If the nodal connectivity of cells is not defined in any of \a meshes.
6965 void MEDCouplingUMesh::MergeNodesOnUMeshesSharingSameCoords(const std::vector<MEDCouplingUMesh *>& meshes, double eps)
6969 std::set<const DataArrayDouble *> s;
6970 for(std::vector<MEDCouplingUMesh *>::const_iterator it=meshes.begin();it!=meshes.end();it++)
6973 s.insert((*it)->getCoords());
6976 std::ostringstream oss; oss << "MEDCouplingUMesh::MergeNodesOnUMeshesSharingSameCoords : In input vector of unstructured meshes of size " << meshes.size() << " the element #" << std::distance(meshes.begin(),it) << " is null !";
6977 throw INTERP_KERNEL::Exception(oss.str());
6982 std::ostringstream oss; oss << "MEDCouplingUMesh::MergeNodesOnUMeshesSharingSameCoords : In input vector of unstructured meshes of size " << meshes.size() << ", it appears that they do not share the same instance of DataArrayDouble for coordiantes ! tryToShareSameCoordsPermute method can help to reach that !";
6983 throw INTERP_KERNEL::Exception(oss.str());
6985 const DataArrayDouble *coo=*(s.begin());
6989 DataArrayInt *comm,*commI;
6990 coo->findCommonTuples(eps,-1,comm,commI);
6991 MCAuto<DataArrayInt> tmp1(comm),tmp2(commI);
6992 int oldNbOfNodes=coo->getNumberOfTuples();
6994 MCAuto<DataArrayInt> o2n=DataArrayInt::ConvertIndexArrayToO2N(oldNbOfNodes,comm->begin(),commI->begin(),commI->end(),newNbOfNodes);
6995 if(oldNbOfNodes==newNbOfNodes)
6997 MCAuto<DataArrayDouble> newCoords=coo->renumberAndReduce(o2n->begin(),newNbOfNodes);
6998 for(std::vector<MEDCouplingUMesh *>::const_iterator it=meshes.begin();it!=meshes.end();it++)
7000 (*it)->renumberNodesInConn(o2n->begin());
7001 (*it)->setCoords(newCoords);
7007 * This static operates only for coords in 3D. The polygon is specified by its connectivity nodes in [ \a begin , \a end ).
7009 bool MEDCouplingUMesh::IsPolygonWellOriented(bool isQuadratic, const double *vec, const int *begin, const int *end, const double *coords)
7012 double v[3]={0.,0.,0.};
7013 std::size_t sz=std::distance(begin,end);
7018 v[0]+=coords[3*begin[i]+1]*coords[3*begin[(i+1)%sz]+2]-coords[3*begin[i]+2]*coords[3*begin[(i+1)%sz]+1];
7019 v[1]+=coords[3*begin[i]+2]*coords[3*begin[(i+1)%sz]]-coords[3*begin[i]]*coords[3*begin[(i+1)%sz]+2];
7020 v[2]+=coords[3*begin[i]]*coords[3*begin[(i+1)%sz]+1]-coords[3*begin[i]+1]*coords[3*begin[(i+1)%sz]];
7022 double ret = vec[0]*v[0]+vec[1]*v[1]+vec[2]*v[2];
7024 // Try using quadratic points if standard points are degenerated (for example a QPOLYG with two
7025 // SEG3 forming a circle):
7026 if (fabs(ret) < INTERP_KERNEL::DEFAULT_ABS_TOL && isQuadratic)
7028 v[0] = 0.0; v[1] = 0.0; v[2] = 0.0;
7029 for(std::size_t j=0;j<sz;j++)
7031 if (j%2) // current point i is quadratic, next point i+1 is standard
7034 ip1 = (j+1)%sz; // ip1 = "i+1"
7036 else // current point i is standard, next point i+1 is quadratic
7041 v[0]+=coords[3*begin[i]+1]*coords[3*begin[ip1]+2]-coords[3*begin[i]+2]*coords[3*begin[ip1]+1];
7042 v[1]+=coords[3*begin[i]+2]*coords[3*begin[ip1]]-coords[3*begin[i]]*coords[3*begin[ip1]+2];
7043 v[2]+=coords[3*begin[i]]*coords[3*begin[ip1]+1]-coords[3*begin[i]+1]*coords[3*begin[ip1]];
7045 ret = vec[0]*v[0]+vec[1]*v[1]+vec[2]*v[2];
7051 * The polyhedron is specified by its connectivity nodes in [ \a begin , \a end ).
7053 bool MEDCouplingUMesh::IsPolyhedronWellOriented(const int *begin, const int *end, const double *coords)
7055 std::vector<std::pair<int,int> > edges;
7056 std::size_t nbOfFaces=std::count(begin,end,-1)+1;
7057 const int *bgFace=begin;
7058 for(std::size_t i=0;i<nbOfFaces;i++)
7060 const int *endFace=std::find(bgFace+1,end,-1);
7061 std::size_t nbOfEdgesInFace=std::distance(bgFace,endFace);
7062 for(std::size_t j=0;j<nbOfEdgesInFace;j++)
7064 std::pair<int,int> p1(bgFace[j],bgFace[(j+1)%nbOfEdgesInFace]);
7065 if(std::find(edges.begin(),edges.end(),p1)!=edges.end())
7067 edges.push_back(p1);
7071 return INTERP_KERNEL::calculateVolumeForPolyh2<int,INTERP_KERNEL::ALL_C_MODE>(begin,(int)std::distance(begin,end),coords)>-EPS_FOR_POLYH_ORIENTATION;
7075 * The 3D extruded static cell (PENTA6,HEXA8,HEXAGP12...) its connectivity nodes in [ \a begin , \a end ).
7077 bool MEDCouplingUMesh::Is3DExtrudedStaticCellWellOriented(const int *begin, const int *end, const double *coords)
7079 double vec0[3],vec1[3];
7080 std::size_t sz=std::distance(begin,end);
7082 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::Is3DExtrudedStaticCellWellOriented : the length of nodal connectivity of extruded cell is not even !");
7083 int nbOfNodes=(int)sz/2;
7084 INTERP_KERNEL::areaVectorOfPolygon<int,INTERP_KERNEL::ALL_C_MODE>(begin,nbOfNodes,coords,vec0);
7085 const double *pt0=coords+3*begin[0];
7086 const double *pt1=coords+3*begin[nbOfNodes];
7087 vec1[0]=pt1[0]-pt0[0]; vec1[1]=pt1[1]-pt0[1]; vec1[2]=pt1[2]-pt0[2];
7088 return (vec0[0]*vec1[0]+vec0[1]*vec1[1]+vec0[2]*vec1[2])<0.;
7091 void MEDCouplingUMesh::CorrectExtrudedStaticCell(int *begin, int *end)
7093 std::size_t sz=std::distance(begin,end);
7094 INTERP_KERNEL::AutoPtr<int> tmp=new int[sz];
7095 std::size_t nbOfNodes(sz/2);
7096 std::copy(begin,end,(int *)tmp);
7097 for(std::size_t j=1;j<nbOfNodes;j++)
7099 begin[j]=tmp[nbOfNodes-j];
7100 begin[j+nbOfNodes]=tmp[nbOfNodes+nbOfNodes-j];
7104 bool MEDCouplingUMesh::IsTetra4WellOriented(const int *begin, const int *end, const double *coords)
7106 std::size_t sz=std::distance(begin,end);
7108 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::IsTetra4WellOriented : Tetra4 cell with not 4 nodes ! Call checkConsistency !");
7109 double vec0[3],vec1[3];
7110 const double *pt0=coords+3*begin[0],*pt1=coords+3*begin[1],*pt2=coords+3*begin[2],*pt3=coords+3*begin[3];
7111 vec0[0]=pt1[0]-pt0[0]; vec0[1]=pt1[1]-pt0[1]; vec0[2]=pt1[2]-pt0[2]; vec1[0]=pt2[0]-pt0[0]; vec1[1]=pt2[1]-pt0[1]; vec1[2]=pt2[2]-pt0[2];
7112 return ((vec0[1]*vec1[2]-vec0[2]*vec1[1])*(pt3[0]-pt0[0])+(vec0[2]*vec1[0]-vec0[0]*vec1[2])*(pt3[1]-pt0[1])+(vec0[0]*vec1[1]-vec0[1]*vec1[0])*(pt3[2]-pt0[2]))<0;
7115 bool MEDCouplingUMesh::IsPyra5WellOriented(const int *begin, const int *end, const double *coords)
7117 std::size_t sz=std::distance(begin,end);
7119 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::IsPyra5WellOriented : Pyra5 cell with not 5 nodes ! Call checkConsistency !");
7121 INTERP_KERNEL::areaVectorOfPolygon<int,INTERP_KERNEL::ALL_C_MODE>(begin,4,coords,vec0);
7122 const double *pt0=coords+3*begin[0],*pt1=coords+3*begin[4];
7123 return (vec0[0]*(pt1[0]-pt0[0])+vec0[1]*(pt1[1]-pt0[1])+vec0[2]*(pt1[2]-pt0[2]))<0.;
7127 * This method performs a simplyfication of a single polyedron cell. To do that each face of cell whose connectivity is defined by [ \b begin , \b end )
7128 * is compared with the others in order to find faces in the same plane (with approx of eps). If any, the cells are grouped together and projected to
7131 * \param [in] eps is a relative precision that allows to establish if some 3D plane are coplanar or not.
7132 * \param [in] coords the coordinates with nb of components exactly equal to 3
7133 * \param [in] begin begin of the nodal connectivity (geometric type included) of a single polyhedron cell
7134 * \param [in] end end of nodal connectivity of a single polyhedron cell (excluded)
7135 * \param [out] res the result is put at the end of the vector without any alteration of the data.
7137 void MEDCouplingUMesh::SimplifyPolyhedronCell(double eps, const DataArrayDouble *coords, int index, DataArrayInt *res, MEDCouplingUMesh *faces,
7138 DataArrayInt *E_Fi, DataArrayInt *E_F, DataArrayInt *F_Ei, DataArrayInt *F_E)
7140 int nbFaces = E_Fi->getIJ(index + 1, 0) - E_Fi->getIJ(index, 0);
7141 MCAuto<DataArrayDouble> v=DataArrayDouble::New(); v->alloc(nbFaces,3);
7142 double *vPtr=v->getPointer();
7143 MCAuto<DataArrayDouble> p=DataArrayDouble::New(); p->alloc(nbFaces,2);
7144 double *pPtr=p->getPointer();
7145 int *e_fi = E_Fi->getPointer(), *e_f = E_F->getPointer(), *f_ei = F_Ei->getPointer(), *f_e = F_E->getPointer();
7146 const int *f_idx = faces->getNodalConnectivityIndex()->getPointer(), *f_cnn = faces->getNodalConnectivity()->getPointer();
7147 for(int i=0;i<nbFaces;i++,vPtr+=3,pPtr++)
7149 int face = e_f[e_fi[index] + i];
7150 ComputeVecAndPtOfFace(eps, coords->begin(), f_cnn + f_idx[face] + 1, f_cnn + f_idx[face + 1], vPtr, pPtr);
7151 // to differentiate faces going to different cells:
7153 for (int j = f_ei[face]; j < f_ei[face + 1]; j++)
7156 pPtr=p->getPointer(); vPtr=v->getPointer();
7157 DataArrayInt *comm1=0,*commI1=0;
7158 v->findCommonTuples(eps,-1,comm1,commI1);
7159 for (int i = 0; i < nbFaces; i++)
7160 if (comm1->findIdFirstEqual(i) < 0)
7162 comm1->pushBackSilent(i);
7163 commI1->pushBackSilent(comm1->getNumberOfTuples());
7165 MCAuto<DataArrayInt> comm1Auto(comm1),commI1Auto(commI1);
7166 const int *comm1Ptr=comm1->begin();
7167 const int *commI1Ptr=commI1->begin();
7168 int nbOfGrps1=commI1Auto->getNumberOfTuples()-1;
7169 res->pushBackSilent((int)INTERP_KERNEL::NORM_POLYHED);
7171 for(int i=0;i<nbOfGrps1;i++)
7173 int vecId=comm1Ptr[commI1Ptr[i]];
7174 MCAuto<DataArrayDouble> tmpgrp2=p->selectByTupleId(comm1Ptr+commI1Ptr[i],comm1Ptr+commI1Ptr[i+1]);
7175 DataArrayInt *comm2=0,*commI2=0;
7176 tmpgrp2->findCommonTuples(eps,-1,comm2,commI2);
7177 for (int j = 0; j < commI1Ptr[i+1] - commI1Ptr[i]; j++)
7178 if (comm2->findIdFirstEqual(j) < 0)
7180 comm2->pushBackSilent(j);
7181 commI2->pushBackSilent(comm2->getNumberOfTuples());
7183 MCAuto<DataArrayInt> comm2Auto(comm2),commI2Auto(commI2);
7184 const int *comm2Ptr=comm2->begin();
7185 const int *commI2Ptr=commI2->begin();
7186 int nbOfGrps2=commI2Auto->getNumberOfTuples()-1;
7187 for(int j=0;j<nbOfGrps2;j++)
7189 if(commI2Ptr[j+1] == commI2Ptr[j] + 1)
7191 int face = e_f[e_fi[index] + comm1Ptr[commI1Ptr[i] + comm2Ptr[commI2Ptr[j]]]]; //hmmm
7192 res->insertAtTheEnd(f_cnn + f_idx[face] + 1, f_cnn + f_idx[face + 1]);
7193 res->pushBackSilent(-1);
7197 int pointId=comm1Ptr[commI1Ptr[i]+comm2Ptr[commI2Ptr[j]]];
7198 MCAuto<DataArrayInt> ids2=comm2->selectByTupleIdSafeSlice(commI2Ptr[j],commI2Ptr[j+1],1);
7199 ids2->transformWithIndArr(comm1Ptr+commI1Ptr[i],comm1Ptr+commI1Ptr[i+1]);
7200 ids2->transformWithIndArr(e_f + e_fi[index], e_f + e_fi[index + 1]);
7201 MCAuto<MEDCouplingUMesh> mm3=static_cast<MEDCouplingUMesh *>(faces->buildPartOfMySelf(ids2->begin(),ids2->end(),true));
7202 MCAuto<DataArrayInt> idsNodeTmp=mm3->zipCoordsTraducer();
7203 MCAuto<DataArrayInt> idsNode=idsNodeTmp->invertArrayO2N2N2O(mm3->getNumberOfNodes());
7204 const int *idsNodePtr=idsNode->begin();
7205 double center[3]; center[0]=pPtr[2*pointId]*vPtr[3*vecId]; center[1]=pPtr[2*pointId]*vPtr[3*vecId+1]; center[2]=pPtr[2*pointId]*vPtr[3*vecId+2];
7206 double vec[3]; vec[0]=vPtr[3*vecId+1]; vec[1]=-vPtr[3*vecId]; vec[2]=0.;
7207 double norm=vec[0]*vec[0]+vec[1]*vec[1]+vec[2]*vec[2];
7208 if(std::abs(norm)>eps)
7210 double angle=INTERP_KERNEL::EdgeArcCircle::SafeAsin(norm);
7211 mm3->rotate(center,vec,angle);
7213 mm3->changeSpaceDimension(2);
7214 MCAuto<MEDCouplingUMesh> mm4=mm3->buildSpreadZonesWithPoly();
7215 const int *conn4=mm4->getNodalConnectivity()->begin();
7216 const int *connI4=mm4->getNodalConnectivityIndex()->begin();
7217 int nbOfCells=mm4->getNumberOfCells();
7218 for(int k=0;k<nbOfCells;k++)
7221 for(const int *work=conn4+connI4[k]+1;work!=conn4+connI4[k+1];work++,l++)
7222 res->pushBackSilent(idsNodePtr[*work]);
7223 res->pushBackSilent(-1);
7228 res->popBackSilent();
7232 * This method computes the normalized vector of the plane and the pos of the point belonging to the plane and the line defined by the vector going
7233 * through origin. The plane is defined by its nodal connectivity [ \b begin, \b end ).
7235 * \param [in] eps below that value the dot product of 2 vectors is considered as colinears
7236 * \param [in] coords coordinates expected to have 3 components.
7237 * \param [in] begin start of the nodal connectivity of the face.
7238 * \param [in] end end of the nodal connectivity (excluded) of the face.
7239 * \param [out] v the normalized vector of size 3
7240 * \param [out] p the pos of plane
7242 void MEDCouplingUMesh::ComputeVecAndPtOfFace(double eps, const double *coords, const int *begin, const int *end, double *v, double *p)
7244 std::size_t nbPoints=std::distance(begin,end);
7246 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ComputeVecAndPtOfFace : < of 3 points in face ! not able to find a plane on that face !");
7247 double vec[3]={0.,0.,0.};
7249 bool refFound=false;
7250 for(;j<nbPoints-1 && !refFound;j++)
7252 vec[0]=coords[3*begin[j+1]]-coords[3*begin[j]];
7253 vec[1]=coords[3*begin[j+1]+1]-coords[3*begin[j]+1];
7254 vec[2]=coords[3*begin[j+1]+2]-coords[3*begin[j]+2];
7255 double norm=sqrt(vec[0]*vec[0]+vec[1]*vec[1]+vec[2]*vec[2]);
7259 vec[0]/=norm; vec[1]/=norm; vec[2]/=norm;
7262 for(std::size_t i=j;i<nbPoints-1;i++)
7265 curVec[0]=coords[3*begin[i+1]]-coords[3*begin[i]];
7266 curVec[1]=coords[3*begin[i+1]+1]-coords[3*begin[i]+1];
7267 curVec[2]=coords[3*begin[i+1]+2]-coords[3*begin[i]+2];
7268 double norm=sqrt(curVec[0]*curVec[0]+curVec[1]*curVec[1]+curVec[2]*curVec[2]);
7271 curVec[0]/=norm; curVec[1]/=norm; curVec[2]/=norm;
7272 v[0]=vec[1]*curVec[2]-vec[2]*curVec[1]; v[1]=vec[2]*curVec[0]-vec[0]*curVec[2]; v[2]=vec[0]*curVec[1]-vec[1]*curVec[0];
7273 norm=sqrt(v[0]*v[0]+v[1]*v[1]+v[2]*v[2]);
7276 v[0]/=norm; v[1]/=norm; v[2]/=norm;
7277 *p=v[0]*coords[3*begin[i]]+v[1]*coords[3*begin[i]+1]+v[2]*coords[3*begin[i]+2];
7281 throw INTERP_KERNEL::Exception("Not able to find a normal vector of that 3D face !");
7285 * This method tries to obtain a well oriented polyhedron.
7286 * If the algorithm fails, an exception will be thrown.
7288 void MEDCouplingUMesh::TryToCorrectPolyhedronOrientation(int *begin, int *end, const double *coords)
7290 std::list< std::pair<int,int> > edgesOK,edgesFinished;
7291 std::size_t nbOfFaces=std::count(begin,end,-1)+1;
7292 std::vector<bool> isPerm(nbOfFaces,false);//field on faces False: I don't know, True : oriented
7294 int *bgFace=begin,*endFace=std::find(begin+1,end,-1);
7295 std::size_t nbOfEdgesInFace=std::distance(bgFace,endFace);
7296 for(std::size_t l=0;l<nbOfEdgesInFace;l++) { std::pair<int,int> p1(bgFace[l],bgFace[(l+1)%nbOfEdgesInFace]); edgesOK.push_back(p1); }
7298 while(std::find(isPerm.begin(),isPerm.end(),false)!=isPerm.end())
7301 std::size_t smthChanged=0;
7302 for(std::size_t i=0;i<nbOfFaces;i++)
7304 endFace=std::find(bgFace+1,end,-1);
7305 nbOfEdgesInFace=std::distance(bgFace,endFace);
7309 for(std::size_t j=0;j<nbOfEdgesInFace;j++)
7311 std::pair<int,int> p1(bgFace[j],bgFace[(j+1)%nbOfEdgesInFace]);
7312 std::pair<int,int> p2(p1.second,p1.first);
7313 bool b1=std::find(edgesOK.begin(),edgesOK.end(),p1)!=edgesOK.end();
7314 bool b2=std::find(edgesOK.begin(),edgesOK.end(),p2)!=edgesOK.end();
7315 if(b1 || b2) { b=b2; isPerm[i]=true; smthChanged++; break; }
7320 std::reverse(bgFace+1,endFace);
7321 for(std::size_t j=0;j<nbOfEdgesInFace;j++)
7323 std::pair<int,int> p1(bgFace[j],bgFace[(j+1)%nbOfEdgesInFace]);
7324 std::pair<int,int> p2(p1.second,p1.first);
7325 if(std::find(edgesOK.begin(),edgesOK.end(),p1)!=edgesOK.end())
7326 { std::ostringstream oss; oss << "Face #" << j << " of polyhedron looks bad !"; throw INTERP_KERNEL::Exception(oss.str()); }
7327 if(std::find(edgesFinished.begin(),edgesFinished.end(),p1)!=edgesFinished.end() || std::find(edgesFinished.begin(),edgesFinished.end(),p2)!=edgesFinished.end())
7328 { std::ostringstream oss; oss << "Face #" << j << " of polyhedron looks bad !"; throw INTERP_KERNEL::Exception(oss.str()); }
7329 std::list< std::pair<int,int> >::iterator it=std::find(edgesOK.begin(),edgesOK.end(),p2);
7330 if(it!=edgesOK.end())
7333 edgesFinished.push_back(p1);
7336 edgesOK.push_back(p1);
7343 { throw INTERP_KERNEL::Exception("The polyhedron looks too bad to be repaired !"); }
7345 if(!edgesOK.empty())
7346 { throw INTERP_KERNEL::Exception("The polyhedron looks too bad to be repaired : Some edges are shared only once !"); }
7347 if(INTERP_KERNEL::calculateVolumeForPolyh2<int,INTERP_KERNEL::ALL_C_MODE>(begin,(int)std::distance(begin,end),coords)<-EPS_FOR_POLYH_ORIENTATION)
7348 {//not lucky ! The first face was not correctly oriented : reorient all faces...
7350 for(std::size_t i=0;i<nbOfFaces;i++)
7352 endFace=std::find(bgFace+1,end,-1);
7353 std::reverse(bgFace+1,endFace);
7361 * This method makes the assumption spacedimension == meshdimension == 2.
7362 * This method works only for linear cells.
7364 * \return a newly allocated array containing the connectivity of a polygon type enum included (NORM_POLYGON in pos#0)
7366 DataArrayInt *MEDCouplingUMesh::buildUnionOf2DMesh() const
7368 if(getMeshDimension()!=2 || getSpaceDimension()!=2)
7369 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildUnionOf2DMesh : meshdimension, spacedimension must be equal to 2 !");
7370 MCAuto<MEDCouplingUMesh> skin(computeSkin());
7371 int oldNbOfNodes(skin->getNumberOfNodes());
7372 MCAuto<DataArrayInt> o2n(skin->zipCoordsTraducer());
7373 int nbOfNodesExpected(skin->getNumberOfNodes());
7374 MCAuto<DataArrayInt> n2o(o2n->invertArrayO2N2N2O(oldNbOfNodes));
7375 int nbCells(skin->getNumberOfCells());
7376 if(nbCells==nbOfNodesExpected)
7377 return buildUnionOf2DMeshLinear(skin,n2o);
7378 else if(2*nbCells==nbOfNodesExpected)
7379 return buildUnionOf2DMeshQuadratic(skin,n2o);
7381 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildUnionOf2DMesh : the mesh 2D in input appears to be not in a single part of a 2D mesh !");
7385 * This method makes the assumption spacedimension == meshdimension == 3.
7386 * This method works only for linear cells.
7388 * \return a newly allocated array containing the connectivity of a polygon type enum included (NORM_POLYHED in pos#0)
7390 DataArrayInt *MEDCouplingUMesh::buildUnionOf3DMesh() const
7392 if(getMeshDimension()!=3 || getSpaceDimension()!=3)
7393 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildUnionOf3DMesh : meshdimension, spacedimension must be equal to 2 !");
7394 MCAuto<MEDCouplingUMesh> m=computeSkin();
7395 const int *conn=m->getNodalConnectivity()->begin();
7396 const int *connI=m->getNodalConnectivityIndex()->begin();
7397 int nbOfCells=m->getNumberOfCells();
7398 MCAuto<DataArrayInt> ret=DataArrayInt::New(); ret->alloc(m->getNodalConnectivity()->getNumberOfTuples(),1);
7399 int *work=ret->getPointer(); *work++=INTERP_KERNEL::NORM_POLYHED;
7402 work=std::copy(conn+connI[0]+1,conn+connI[1],work);
7403 for(int i=1;i<nbOfCells;i++)
7406 work=std::copy(conn+connI[i]+1,conn+connI[i+1],work);
7412 * \brief Creates a graph of cell neighbors
7413 * \return MEDCouplingSkyLineArray * - an sky line array the user should delete.
7414 * In the sky line array, graph arcs are stored in terms of (index,value) notation.
7416 * - index: 0 3 5 6 6
7417 * - value: 1 2 3 2 3 3
7418 * means 6 arcs (0,1), (0,2), (0,3), (1,2), (1,3), (2,3)
7419 * Arcs are not doubled but reflexive (1,1) arcs are present for each cell
7421 MEDCouplingSkyLineArray* MEDCouplingUMesh::generateGraph() const
7423 checkConnectivityFullyDefined();
7425 int meshDim = this->getMeshDimension();
7426 MEDCoupling::DataArrayInt* indexr=MEDCoupling::DataArrayInt::New();
7427 MEDCoupling::DataArrayInt* revConn=MEDCoupling::DataArrayInt::New();
7428 this->getReverseNodalConnectivity(revConn,indexr);
7429 const int* indexr_ptr=indexr->begin();
7430 const int* revConn_ptr=revConn->begin();
7432 const MEDCoupling::DataArrayInt* index;
7433 const MEDCoupling::DataArrayInt* conn;
7434 conn=this->getNodalConnectivity(); // it includes a type as the 1st element!!!
7435 index=this->getNodalConnectivityIndex();
7436 int nbCells=this->getNumberOfCells();
7437 const int* index_ptr=index->begin();
7438 const int* conn_ptr=conn->begin();
7440 //creating graph arcs (cell to cell relations)
7441 //arcs are stored in terms of (index,value) notation
7444 // means 6 arcs (0,1), (0,2), (0,3), (1,2), (1,3), (2,3)
7445 // in present version arcs are not doubled but reflexive (1,1) arcs are present for each cell
7447 //warning here one node have less than or equal effective number of cell with it
7448 //but cell could have more than effective nodes
7449 //because other equals nodes in other domain (with other global inode)
7450 std::vector <int> cell2cell_index(nbCells+1,0);
7451 std::vector <int> cell2cell;
7452 cell2cell.reserve(3*nbCells);
7454 for (int icell=0; icell<nbCells;icell++)
7456 std::map<int,int > counter;
7457 for (int iconn=index_ptr[icell]+1; iconn<index_ptr[icell+1];iconn++)
7459 int inode=conn_ptr[iconn];
7460 for (int iconnr=indexr_ptr[inode]; iconnr<indexr_ptr[inode+1];iconnr++)
7462 int icell2=revConn_ptr[iconnr];
7463 std::map<int,int>::iterator iter=counter.find(icell2);
7464 if (iter!=counter.end()) (iter->second)++;
7465 else counter.insert(std::make_pair(icell2,1));
7468 for (std::map<int,int>::const_iterator iter=counter.begin();
7469 iter!=counter.end(); iter++)
7470 if (iter->second >= meshDim)
7472 cell2cell_index[icell+1]++;
7473 cell2cell.push_back(iter->first);
7478 cell2cell_index[0]=0;
7479 for (int icell=0; icell<nbCells;icell++)
7480 cell2cell_index[icell+1]=cell2cell_index[icell]+cell2cell_index[icell+1];
7482 //filling up index and value to create skylinearray structure
7483 MEDCouplingSkyLineArray * array(MEDCouplingSkyLineArray::New(cell2cell_index,cell2cell));
7488 void MEDCouplingUMesh::writeVTKLL(std::ostream& ofs, const std::string& cellData, const std::string& pointData, DataArrayByte *byteData) const
7490 int nbOfCells=getNumberOfCells();
7492 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::writeVTK : the unstructured mesh has no cells !");
7493 ofs << " <" << getVTKDataSetType() << ">\n";
7494 ofs << " <Piece NumberOfPoints=\"" << getNumberOfNodes() << "\" NumberOfCells=\"" << nbOfCells << "\">\n";
7495 ofs << " <PointData>\n" << pointData << std::endl;
7496 ofs << " </PointData>\n";
7497 ofs << " <CellData>\n" << cellData << std::endl;
7498 ofs << " </CellData>\n";
7499 ofs << " <Points>\n";
7500 if(getSpaceDimension()==3)
7501 _coords->writeVTK(ofs,8,"Points",byteData);
7504 MCAuto<DataArrayDouble> coo=_coords->changeNbOfComponents(3,0.);
7505 coo->writeVTK(ofs,8,"Points",byteData);
7507 ofs << " </Points>\n";
7508 ofs << " <Cells>\n";
7509 const int *cPtr=_nodal_connec->begin();
7510 const int *cIPtr=_nodal_connec_index->begin();
7511 MCAuto<DataArrayInt> faceoffsets=DataArrayInt::New(); faceoffsets->alloc(nbOfCells,1);
7512 MCAuto<DataArrayInt> types=DataArrayInt::New(); types->alloc(nbOfCells,1);
7513 MCAuto<DataArrayInt> offsets=DataArrayInt::New(); offsets->alloc(nbOfCells,1);
7514 MCAuto<DataArrayInt> connectivity=DataArrayInt::New(); connectivity->alloc(_nodal_connec->getNumberOfTuples()-nbOfCells,1);
7515 int *w1=faceoffsets->getPointer(),*w2=types->getPointer(),*w3=offsets->getPointer(),*w4=connectivity->getPointer();
7516 int szFaceOffsets=0,szConn=0;
7517 for(int i=0;i<nbOfCells;i++,w1++,w2++,w3++)
7520 if((INTERP_KERNEL::NormalizedCellType)cPtr[cIPtr[i]]!=INTERP_KERNEL::NORM_POLYHED)
7523 *w3=szConn+cIPtr[i+1]-cIPtr[i]-1; szConn+=cIPtr[i+1]-cIPtr[i]-1;
7524 w4=std::copy(cPtr+cIPtr[i]+1,cPtr+cIPtr[i+1],w4);
7528 int deltaFaceOffset=cIPtr[i+1]-cIPtr[i]+1;
7529 *w1=szFaceOffsets+deltaFaceOffset; szFaceOffsets+=deltaFaceOffset;
7530 std::set<int> c(cPtr+cIPtr[i]+1,cPtr+cIPtr[i+1]); c.erase(-1);
7531 *w3=szConn+(int)c.size(); szConn+=(int)c.size();
7532 w4=std::copy(c.begin(),c.end(),w4);
7535 types->transformWithIndArr(MEDCOUPLING2VTKTYPETRADUCER,MEDCOUPLING2VTKTYPETRADUCER+INTERP_KERNEL::NORM_MAXTYPE+1);
7536 types->writeVTK(ofs,8,"UInt8","types",byteData);
7537 offsets->writeVTK(ofs,8,"Int32","offsets",byteData);
7538 if(szFaceOffsets!=0)
7539 {//presence of Polyhedra
7540 connectivity->reAlloc(szConn);
7541 faceoffsets->writeVTK(ofs,8,"Int32","faceoffsets",byteData);
7542 MCAuto<DataArrayInt> faces=DataArrayInt::New(); faces->alloc(szFaceOffsets,1);
7543 w1=faces->getPointer();
7544 for(int i=0;i<nbOfCells;i++)
7545 if((INTERP_KERNEL::NormalizedCellType)cPtr[cIPtr[i]]==INTERP_KERNEL::NORM_POLYHED)
7547 int nbFaces=std::count(cPtr+cIPtr[i]+1,cPtr+cIPtr[i+1],-1)+1;
7549 const int *w6=cPtr+cIPtr[i]+1,*w5=0;
7550 for(int j=0;j<nbFaces;j++)
7552 w5=std::find(w6,cPtr+cIPtr[i+1],-1);
7553 *w1++=(int)std::distance(w6,w5);
7554 w1=std::copy(w6,w5,w1);
7558 faces->writeVTK(ofs,8,"Int32","faces",byteData);
7560 connectivity->writeVTK(ofs,8,"Int32","connectivity",byteData);
7561 ofs << " </Cells>\n";
7562 ofs << " </Piece>\n";
7563 ofs << " </" << getVTKDataSetType() << ">\n";
7566 void MEDCouplingUMesh::reprQuickOverview(std::ostream& stream) const
7568 stream << "MEDCouplingUMesh C++ instance at " << this << ". Name : \"" << getName() << "\".";
7570 { stream << " Not set !"; return ; }
7571 stream << " Mesh dimension : " << _mesh_dim << ".";
7575 { stream << " No coordinates set !"; return ; }
7576 if(!_coords->isAllocated())
7577 { stream << " Coordinates set but not allocated !"; return ; }
7578 stream << " Space dimension : " << _coords->getNumberOfComponents() << "." << std::endl;
7579 stream << "Number of nodes : " << _coords->getNumberOfTuples() << ".";
7580 if(!_nodal_connec_index)
7581 { stream << std::endl << "Nodal connectivity NOT set !"; return ; }
7582 if(!_nodal_connec_index->isAllocated())
7583 { stream << std::endl << "Nodal connectivity set but not allocated !"; return ; }
7584 int lgth=_nodal_connec_index->getNumberOfTuples();
7585 int cpt=_nodal_connec_index->getNumberOfComponents();
7586 if(cpt!=1 || lgth<1)
7588 stream << std::endl << "Number of cells : " << lgth-1 << ".";
7591 std::string MEDCouplingUMesh::getVTKDataSetType() const
7593 return std::string("UnstructuredGrid");
7596 std::string MEDCouplingUMesh::getVTKFileExtension() const
7598 return std::string("vtu");
7604 * Provides a renumbering of the cells of this (which has to be a piecewise connected 1D line), so that
7605 * the segments of the line are indexed in consecutive order (i.e. cells \a i and \a i+1 are neighbors).
7606 * This doesn't modify the mesh. This method only works using nodal connectivity consideration. Coordinates of nodes are ignored here.
7607 * The caller is to deal with the resulting DataArrayInt.
7608 * \throw If the coordinate array is not set.
7609 * \throw If the nodal connectivity of the cells is not defined.
7610 * \throw If m1 is not a mesh of dimension 2, or m1 is not a mesh of dimension 1
7611 * \throw If m2 is not a (piecewise) line (i.e. if a point has more than 2 adjacent segments)
7613 * \sa DataArrayInt::sortEachPairToMakeALinkedList
7615 DataArrayInt *MEDCouplingUMesh::orderConsecutiveCells1D() const
7617 checkFullyDefined();
7618 if(getMeshDimension()!=1)
7619 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::orderConsecutiveCells1D works on unstructured mesh with meshdim = 1 !");
7621 // Check that this is a line (and not a more complex 1D mesh) - each point is used at most by 2 segments:
7622 MCAuto<DataArrayInt> _d(DataArrayInt::New()),_dI(DataArrayInt::New());
7623 MCAuto<DataArrayInt> _rD(DataArrayInt::New()),_rDI(DataArrayInt::New());
7624 MCAuto<MEDCouplingUMesh> m_points(buildDescendingConnectivity(_d, _dI, _rD, _rDI));
7625 const int *d(_d->begin()), *dI(_dI->begin());
7626 const int *rD(_rD->begin()), *rDI(_rDI->begin());
7627 MCAuto<DataArrayInt> _dsi(_rDI->deltaShiftIndex());
7628 const int * dsi(_dsi->begin());
7629 MCAuto<DataArrayInt> dsii = _dsi->findIdsNotInRange(0,3);
7631 if (dsii->getNumberOfTuples())
7632 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::orderConsecutiveCells1D only work with a mesh being a (piecewise) connected line!");
7634 int nc(getNumberOfCells());
7635 MCAuto<DataArrayInt> result(DataArrayInt::New());
7636 result->alloc(nc,1);
7638 // set of edges not used so far
7639 std::set<int> edgeSet;
7640 for (int i=0; i<nc; edgeSet.insert(i), i++);
7644 // while we have points with only one neighbor segments
7647 std::list<int> linePiece;
7648 // fills a list of consecutive segment linked to startSeg. This can go forward or backward.
7649 for (int direction=0;direction<2;direction++) // direction=0 --> forward, direction=1 --> backward
7651 // Fill the list forward (resp. backward) from the start segment:
7652 int activeSeg = startSeg;
7653 int prevPointId = -20;
7655 while (!edgeSet.empty())
7657 if (!(direction == 1 && prevPointId==-20)) // prevent adding twice startSeg
7660 linePiece.push_back(activeSeg);
7662 linePiece.push_front(activeSeg);
7663 edgeSet.erase(activeSeg);
7666 int ptId1 = d[dI[activeSeg]], ptId2 = d[dI[activeSeg]+1];
7667 ptId = direction ? (ptId1 == prevPointId ? ptId2 : ptId1) : (ptId2 == prevPointId ? ptId1 : ptId2);
7668 if (dsi[ptId] == 1) // hitting the end of the line
7671 int seg1 = rD[rDI[ptId]], seg2 = rD[rDI[ptId]+1];
7672 activeSeg = (seg1 == activeSeg) ? seg2 : seg1;
7675 // Done, save final piece into DA:
7676 std::copy(linePiece.begin(), linePiece.end(), result->getPointer()+newIdx);
7677 newIdx += linePiece.size();
7679 // identify next valid start segment (one which is not consumed)
7680 if(!edgeSet.empty())
7681 startSeg = *(edgeSet.begin());
7683 while (!edgeSet.empty());
7684 return result.retn();
7688 * This method split some of edges of 2D cells in \a this. The edges to be split are specified in \a subNodesInSeg
7689 * and in \a subNodesInSegI using \ref numbering-indirect storage mode.
7690 * To do the work this method can optionally needs information about middle of subedges for quadratic cases if
7691 * a minimal creation of new nodes is wanted.
7692 * So this method try to reduce at most the number of new nodes. The only case that can lead this method to add
7693 * nodes if a SEG3 is split without information of middle.
7694 * \b WARNING : is returned value is different from 0 a call to MEDCouplingUMesh::mergeNodes is necessary to
7695 * avoid to have a non conform mesh.
7697 * \return int - the number of new nodes created (in most of cases 0).
7699 * \throw If \a this is not coherent.
7700 * \throw If \a this has not spaceDim equal to 2.
7701 * \throw If \a this has not meshDim equal to 2.
7702 * \throw If some subcells needed to be split are orphan.
7703 * \sa MEDCouplingUMesh::conformize2D
7705 int MEDCouplingUMesh::split2DCells(const DataArrayInt *desc, const DataArrayInt *descI, const DataArrayInt *subNodesInSeg, const DataArrayInt *subNodesInSegI, const DataArrayInt *midOpt, const DataArrayInt *midOptI)
7707 if(!desc || !descI || !subNodesInSeg || !subNodesInSegI)
7708 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::split2DCells : the 4 first arrays must be not null !");
7709 desc->checkAllocated(); descI->checkAllocated(); subNodesInSeg->checkAllocated(); subNodesInSegI->checkAllocated();
7710 if(getSpaceDimension()!=2 || getMeshDimension()!=2)
7711 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::split2DCells : This method only works for meshes with spaceDim=2 and meshDim=2 !");
7712 if(midOpt==0 && midOptI==0)
7714 split2DCellsLinear(desc,descI,subNodesInSeg,subNodesInSegI);
7717 else if(midOpt!=0 && midOptI!=0)
7718 return split2DCellsQuadratic(desc,descI,subNodesInSeg,subNodesInSegI,midOpt,midOptI);
7720 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::split2DCells : middle parameters must be set to null for all or not null for all.");
7724 * This method compute the convex hull of a single 2D cell. This method tries to conserve at maximum the given input connectivity. In particular, if the orientation of cell is not clockwise
7725 * as in MED format norm. If definitely the result of Jarvis algorithm is not matchable with the input connectivity, the result will be copied into \b nodalConnecOut parameter and
7726 * the geometric cell type set to INTERP_KERNEL::NORM_POLYGON.
7727 * This method excepts that \b coords parameter is expected to be in dimension 2. [ \b nodalConnBg , \b nodalConnEnd ) is the nodal connectivity of the input
7728 * cell (geometric cell type included at the position 0). If the meshdimension of the input cell is not equal to 2 an INTERP_KERNEL::Exception will be thrown.
7730 * \return false if the input connectivity represents already the convex hull, true if the input cell needs to be reordered.
7732 bool MEDCouplingUMesh::BuildConvexEnvelopOf2DCellJarvis(const double *coords, const int *nodalConnBg, const int *nodalConnEnd, DataArrayInt *nodalConnecOut)
7734 std::size_t sz=std::distance(nodalConnBg,nodalConnEnd);
7737 const INTERP_KERNEL::CellModel& cm=INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)*nodalConnBg);
7738 if(cm.getDimension()==2)
7740 const int *node=nodalConnBg+1;
7741 int startNode=*node++;
7742 double refX=coords[2*startNode];
7743 for(;node!=nodalConnEnd;node++)
7745 if(coords[2*(*node)]<refX)
7748 refX=coords[2*startNode];
7751 std::vector<int> tmpOut; tmpOut.reserve(sz); tmpOut.push_back(startNode);
7755 double angle0=-M_PI/2;
7760 double angleNext=0.;
7761 while(nextNode!=startNode)
7765 for(node=nodalConnBg+1;node!=nodalConnEnd;node++)
7767 if(*node!=tmpOut.back() && *node!=prevNode)
7769 tmp2[0]=coords[2*(*node)]-coords[2*tmpOut.back()]; tmp2[1]=coords[2*(*node)+1]-coords[2*tmpOut.back()+1];
7770 double angleM=INTERP_KERNEL::EdgeArcCircle::GetAbsoluteAngle(tmp2,tmp1);
7775 res=angle0-angleM+2.*M_PI;
7784 if(nextNode!=startNode)
7786 angle0=angleNext-M_PI;
7789 prevNode=tmpOut.back();
7790 tmpOut.push_back(nextNode);
7793 std::vector<int> tmp3(2*(sz-1));
7794 std::vector<int>::iterator it=std::copy(nodalConnBg+1,nodalConnEnd,tmp3.begin());
7795 std::copy(nodalConnBg+1,nodalConnEnd,it);
7796 if(std::search(tmp3.begin(),tmp3.end(),tmpOut.begin(),tmpOut.end())!=tmp3.end())
7798 nodalConnecOut->insertAtTheEnd(nodalConnBg,nodalConnEnd);
7801 if(std::search(tmp3.rbegin(),tmp3.rend(),tmpOut.begin(),tmpOut.end())!=tmp3.rend())
7803 nodalConnecOut->insertAtTheEnd(nodalConnBg,nodalConnEnd);
7808 nodalConnecOut->pushBackSilent((int)INTERP_KERNEL::NORM_POLYGON);
7809 nodalConnecOut->insertAtTheEnd(tmpOut.begin(),tmpOut.end());
7814 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::BuildConvexEnvelopOf2DCellJarvis : invalid 2D cell connectivity !");
7817 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::BuildConvexEnvelopOf2DCellJarvis : invalid 2D cell connectivity !");
7821 * This method works on an input pair (\b arr, \b arrIndx) where \b arr indexes is in \b arrIndx.
7822 * This method will not impact the size of inout parameter \b arrIndx but the size of \b arr will be modified in case of suppression.
7824 * \param [in] idsToRemoveBg begin of set of ids to remove in \b arr (included)
7825 * \param [in] idsToRemoveEnd end of set of ids to remove in \b arr (excluded)
7826 * \param [in,out] arr array in which the remove operation will be done.
7827 * \param [in,out] arrIndx array in the remove operation will modify
7828 * \param [in] offsetForRemoval (by default 0) offset so that for each i in [0,arrIndx->getNumberOfTuples()-1) removal process will be performed in the following range [arr+arrIndx[i]+offsetForRemoval,arr+arr[i+1])
7829 * \return true if \b arr and \b arrIndx have been modified, false if not.
7831 bool MEDCouplingUMesh::RemoveIdsFromIndexedArrays(const int *idsToRemoveBg, const int *idsToRemoveEnd, DataArrayInt *arr, DataArrayInt *arrIndx, int offsetForRemoval)
7833 if(!arrIndx || !arr)
7834 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::RemoveIdsFromIndexedArrays : some input arrays are empty !");
7835 if(offsetForRemoval<0)
7836 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::RemoveIdsFromIndexedArrays : offsetForRemoval should be >=0 !");
7837 std::set<int> s(idsToRemoveBg,idsToRemoveEnd);
7838 int nbOfGrps=arrIndx->getNumberOfTuples()-1;
7839 int *arrIPtr=arrIndx->getPointer();
7842 const int *arrPtr=arr->begin();
7843 std::vector<int> arrOut;//no utility to switch to DataArrayInt because copy always needed
7844 for(int i=0;i<nbOfGrps;i++,arrIPtr++)
7846 if(*arrIPtr-previousArrI>offsetForRemoval)
7848 for(const int *work=arrPtr+previousArrI+offsetForRemoval;work!=arrPtr+*arrIPtr;work++)
7850 if(s.find(*work)==s.end())
7851 arrOut.push_back(*work);
7854 previousArrI=*arrIPtr;
7855 *arrIPtr=(int)arrOut.size();
7857 if(arr->getNumberOfTuples()==arrOut.size())
7859 arr->alloc((int)arrOut.size(),1);
7860 std::copy(arrOut.begin(),arrOut.end(),arr->getPointer());
7865 * This method works on a pair input (\b arrIn, \b arrIndxIn) where \b arrIn indexes is in \b arrIndxIn
7866 * (\ref numbering-indirect).
7867 * This method returns the result of the extraction ( specified by a set of ids in [\b idsOfSelectBg , \b idsOfSelectEnd ) ).
7868 * The selection of extraction is done standardly in new2old format.
7869 * This method returns indexed arrays (\ref numbering-indirect) using 2 arrays (arrOut,arrIndexOut).
7871 * \param [in] idsOfSelectBg begin of set of ids of the input extraction (included)
7872 * \param [in] idsOfSelectEnd end of set of ids of the input extraction (excluded)
7873 * \param [in] arrIn arr origin array from which the extraction will be done.
7874 * \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
7875 * \param [out] arrOut the resulting array
7876 * \param [out] arrIndexOut the index array of the resulting array \b arrOut
7877 * \sa MEDCouplingUMesh::ExtractFromIndexedArraysSlice
7879 void MEDCouplingUMesh::ExtractFromIndexedArrays(const int *idsOfSelectBg, const int *idsOfSelectEnd, const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn,
7880 DataArrayInt* &arrOut, DataArrayInt* &arrIndexOut)
7882 if(!arrIn || !arrIndxIn)
7883 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ExtractFromIndexedArrays : input pointer is NULL !");
7884 arrIn->checkAllocated(); arrIndxIn->checkAllocated();
7885 if(arrIn->getNumberOfComponents()!=1 || arrIndxIn->getNumberOfComponents()!=1)
7886 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ExtractFromIndexedArrays : input arrays must have exactly one component !");
7887 std::size_t sz=std::distance(idsOfSelectBg,idsOfSelectEnd);
7888 const int *arrInPtr=arrIn->begin();
7889 const int *arrIndxPtr=arrIndxIn->begin();
7890 int nbOfGrps=arrIndxIn->getNumberOfTuples()-1;
7892 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ExtractFromIndexedArrays : The format of \"arrIndxIn\" is invalid ! Its nb of tuples should be >=1 !");
7893 int maxSizeOfArr=arrIn->getNumberOfTuples();
7894 MCAuto<DataArrayInt> arro=DataArrayInt::New();
7895 MCAuto<DataArrayInt> arrIo=DataArrayInt::New();
7896 arrIo->alloc((int)(sz+1),1);
7897 const int *idsIt=idsOfSelectBg;
7898 int *work=arrIo->getPointer();
7901 for(std::size_t i=0;i<sz;i++,work++,idsIt++)
7903 if(*idsIt>=0 && *idsIt<nbOfGrps)
7904 lgth+=arrIndxPtr[*idsIt+1]-arrIndxPtr[*idsIt];
7907 std::ostringstream oss; oss << "MEDCouplingUMesh::ExtractFromIndexedArrays : id located on pos #" << i << " value is " << *idsIt << " ! Must be in [0," << nbOfGrps << ") !";
7908 throw INTERP_KERNEL::Exception(oss.str());
7914 std::ostringstream oss; oss << "MEDCouplingUMesh::ExtractFromIndexedArrays : id located on pos #" << i << " value is " << *idsIt << " and at this pos arrIndxIn[" << *idsIt;
7915 oss << "+1]-arrIndxIn[" << *idsIt << "] < 0 ! The input index array is bugged !";
7916 throw INTERP_KERNEL::Exception(oss.str());
7919 arro->alloc(lgth,1);
7920 work=arro->getPointer();
7921 idsIt=idsOfSelectBg;
7922 for(std::size_t i=0;i<sz;i++,idsIt++)
7924 if(arrIndxPtr[*idsIt]>=0 && arrIndxPtr[*idsIt+1]<=maxSizeOfArr)
7925 work=std::copy(arrInPtr+arrIndxPtr[*idsIt],arrInPtr+arrIndxPtr[*idsIt+1],work);
7928 std::ostringstream oss; oss << "MEDCouplingUMesh::ExtractFromIndexedArrays : id located on pos #" << i << " value is " << *idsIt << " arrIndx[" << *idsIt << "] must be >= 0 and arrIndx[";
7929 oss << *idsIt << "+1] <= " << maxSizeOfArr << " (the size of arrIn)!";
7930 throw INTERP_KERNEL::Exception(oss.str());
7934 arrIndexOut=arrIo.retn();
7938 * This method works on a pair input (\b arrIn, \b arrIndxIn) where \b arrIn indexes is in \b arrIndxIn
7939 * (\ref numbering-indirect).
7940 * This method returns the result of the extraction ( specified by a set of ids with a slice given by \a idsOfSelectStart, \a idsOfSelectStop and \a idsOfSelectStep ).
7941 * The selection of extraction is done standardly in new2old format.
7942 * This method returns indexed arrays (\ref numbering-indirect) using 2 arrays (arrOut,arrIndexOut).
7944 * \param [in] idsOfSelectStart begin of set of ids of the input extraction (included)
7945 * \param [in] idsOfSelectStop end of set of ids of the input extraction (excluded)
7946 * \param [in] idsOfSelectStep
7947 * \param [in] arrIn arr origin array from which the extraction will be done.
7948 * \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
7949 * \param [out] arrOut the resulting array
7950 * \param [out] arrIndexOut the index array of the resulting array \b arrOut
7951 * \sa MEDCouplingUMesh::ExtractFromIndexedArrays
7953 void MEDCouplingUMesh::ExtractFromIndexedArraysSlice(int idsOfSelectStart, int idsOfSelectStop, int idsOfSelectStep, const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn,
7954 DataArrayInt* &arrOut, DataArrayInt* &arrIndexOut)
7956 if(!arrIn || !arrIndxIn)
7957 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ExtractFromIndexedArraysSlice : input pointer is NULL !");
7958 arrIn->checkAllocated(); arrIndxIn->checkAllocated();
7959 if(arrIn->getNumberOfComponents()!=1 || arrIndxIn->getNumberOfComponents()!=1)
7960 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ExtractFromIndexedArraysSlice : input arrays must have exactly one component !");
7961 int sz=DataArrayInt::GetNumberOfItemGivenBESRelative(idsOfSelectStart,idsOfSelectStop,idsOfSelectStep,"MEDCouplingUMesh::ExtractFromIndexedArraysSlice : Input slice ");
7962 const int *arrInPtr=arrIn->begin();
7963 const int *arrIndxPtr=arrIndxIn->begin();
7964 int nbOfGrps=arrIndxIn->getNumberOfTuples()-1;
7966 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ExtractFromIndexedArraysSlice : The format of \"arrIndxIn\" is invalid ! Its nb of tuples should be >=1 !");
7967 int maxSizeOfArr=arrIn->getNumberOfTuples();
7968 MCAuto<DataArrayInt> arro=DataArrayInt::New();
7969 MCAuto<DataArrayInt> arrIo=DataArrayInt::New();
7970 arrIo->alloc((int)(sz+1),1);
7971 int idsIt=idsOfSelectStart;
7972 int *work=arrIo->getPointer();
7975 for(int i=0;i<sz;i++,work++,idsIt+=idsOfSelectStep)
7977 if(idsIt>=0 && idsIt<nbOfGrps)
7978 lgth+=arrIndxPtr[idsIt+1]-arrIndxPtr[idsIt];
7981 std::ostringstream oss; oss << "MEDCouplingUMesh::ExtractFromIndexedArraysSlice : id located on pos #" << i << " value is " << idsIt << " ! Must be in [0," << nbOfGrps << ") !";
7982 throw INTERP_KERNEL::Exception(oss.str());
7988 std::ostringstream oss; oss << "MEDCouplingUMesh::ExtractFromIndexedArraysSlice : id located on pos #" << i << " value is " << idsIt << " and at this pos arrIndxIn[" << idsIt;
7989 oss << "+1]-arrIndxIn[" << idsIt << "] < 0 ! The input index array is bugged !";
7990 throw INTERP_KERNEL::Exception(oss.str());
7993 arro->alloc(lgth,1);
7994 work=arro->getPointer();
7995 idsIt=idsOfSelectStart;
7996 for(int i=0;i<sz;i++,idsIt+=idsOfSelectStep)
7998 if(arrIndxPtr[idsIt]>=0 && arrIndxPtr[idsIt+1]<=maxSizeOfArr)
7999 work=std::copy(arrInPtr+arrIndxPtr[idsIt],arrInPtr+arrIndxPtr[idsIt+1],work);
8002 std::ostringstream oss; oss << "MEDCouplingUMesh::ExtractFromIndexedArraysSlice : id located on pos #" << i << " value is " << idsIt << " arrIndx[" << idsIt << "] must be >= 0 and arrIndx[";
8003 oss << idsIt << "+1] <= " << maxSizeOfArr << " (the size of arrIn)!";
8004 throw INTERP_KERNEL::Exception(oss.str());
8008 arrIndexOut=arrIo.retn();
8012 * This method works on an input pair (\b arrIn, \b arrIndxIn) where \b arrIn indexes is in \b arrIndxIn.
8013 * This method builds an output pair (\b arrOut,\b arrIndexOut) that is a copy from \b arrIn for all cell ids \b not \b in [ \b idsOfSelectBg , \b idsOfSelectEnd ) and for
8014 * cellIds \b in [ \b idsOfSelectBg , \b idsOfSelectEnd ) a copy coming from the corresponding values in input pair (\b srcArr, \b srcArrIndex).
8015 * This method is an generalization of MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx that performs the same thing but by without building explicitly a result output arrays.
8017 * \param [in] idsOfSelectBg begin of set of ids of the input extraction (included)
8018 * \param [in] idsOfSelectEnd end of set of ids of the input extraction (excluded)
8019 * \param [in] arrIn arr origin array from which the extraction will be done.
8020 * \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
8021 * \param [in] srcArr input array that will be used as source of copy for ids in [ \b idsOfSelectBg, \b idsOfSelectEnd )
8022 * \param [in] srcArrIndex index array of \b srcArr
8023 * \param [out] arrOut the resulting array
8024 * \param [out] arrIndexOut the index array of the resulting array \b arrOut
8026 * \sa MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx
8028 void MEDCouplingUMesh::SetPartOfIndexedArrays(const int *idsOfSelectBg, const int *idsOfSelectEnd, const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn,
8029 const DataArrayInt *srcArr, const DataArrayInt *srcArrIndex,
8030 DataArrayInt* &arrOut, DataArrayInt* &arrIndexOut)
8032 if(arrIn==0 || arrIndxIn==0 || srcArr==0 || srcArrIndex==0)
8033 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::SetPartOfIndexedArrays : presence of null pointer in input parameter !");
8034 MCAuto<DataArrayInt> arro=DataArrayInt::New();
8035 MCAuto<DataArrayInt> arrIo=DataArrayInt::New();
8036 int nbOfTuples=arrIndxIn->getNumberOfTuples()-1;
8037 std::vector<bool> v(nbOfTuples,true);
8039 const int *arrIndxInPtr=arrIndxIn->begin();
8040 const int *srcArrIndexPtr=srcArrIndex->begin();
8041 for(const int *it=idsOfSelectBg;it!=idsOfSelectEnd;it++,srcArrIndexPtr++)
8043 if(*it>=0 && *it<nbOfTuples)
8046 offset+=(srcArrIndexPtr[1]-srcArrIndexPtr[0])-(arrIndxInPtr[*it+1]-arrIndxInPtr[*it]);
8050 std::ostringstream oss; oss << "MEDCouplingUMesh::SetPartOfIndexedArrays : On pos #" << std::distance(idsOfSelectBg,it) << " value is " << *it << " not in [0," << nbOfTuples << ") !";
8051 throw INTERP_KERNEL::Exception(oss.str());
8054 srcArrIndexPtr=srcArrIndex->begin();
8055 arrIo->alloc(nbOfTuples+1,1);
8056 arro->alloc(arrIn->getNumberOfTuples()+offset,1);
8057 const int *arrInPtr=arrIn->begin();
8058 const int *srcArrPtr=srcArr->begin();
8059 int *arrIoPtr=arrIo->getPointer(); *arrIoPtr++=0;
8060 int *arroPtr=arro->getPointer();
8061 for(int ii=0;ii<nbOfTuples;ii++,arrIoPtr++)
8065 arroPtr=std::copy(arrInPtr+arrIndxInPtr[ii],arrInPtr+arrIndxInPtr[ii+1],arroPtr);
8066 *arrIoPtr=arrIoPtr[-1]+(arrIndxInPtr[ii+1]-arrIndxInPtr[ii]);
8070 std::size_t pos=std::distance(idsOfSelectBg,std::find(idsOfSelectBg,idsOfSelectEnd,ii));
8071 arroPtr=std::copy(srcArrPtr+srcArrIndexPtr[pos],srcArrPtr+srcArrIndexPtr[pos+1],arroPtr);
8072 *arrIoPtr=arrIoPtr[-1]+(srcArrIndexPtr[pos+1]-srcArrIndexPtr[pos]);
8076 arrIndexOut=arrIo.retn();
8080 * This method works on an input pair (\b arrIn, \b arrIndxIn) where \b arrIn indexes is in \b arrIndxIn.
8081 * This method is an specialization of MEDCouplingUMesh::SetPartOfIndexedArrays in the case of assignment do not modify the index in \b arrIndxIn.
8083 * \param [in] idsOfSelectBg begin of set of ids of the input extraction (included)
8084 * \param [in] idsOfSelectEnd end of set of ids of the input extraction (excluded)
8085 * \param [in,out] arrInOut arr origin array from which the extraction will be done.
8086 * \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
8087 * \param [in] srcArr input array that will be used as source of copy for ids in [ \b idsOfSelectBg , \b idsOfSelectEnd )
8088 * \param [in] srcArrIndex index array of \b srcArr
8090 * \sa MEDCouplingUMesh::SetPartOfIndexedArrays
8092 void MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx(const int *idsOfSelectBg, const int *idsOfSelectEnd, DataArrayInt *arrInOut, const DataArrayInt *arrIndxIn,
8093 const DataArrayInt *srcArr, const DataArrayInt *srcArrIndex)
8095 if(arrInOut==0 || arrIndxIn==0 || srcArr==0 || srcArrIndex==0)
8096 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx : presence of null pointer in input parameter !");
8097 int nbOfTuples=arrIndxIn->getNumberOfTuples()-1;
8098 const int *arrIndxInPtr=arrIndxIn->begin();
8099 const int *srcArrIndexPtr=srcArrIndex->begin();
8100 int *arrInOutPtr=arrInOut->getPointer();
8101 const int *srcArrPtr=srcArr->begin();
8102 for(const int *it=idsOfSelectBg;it!=idsOfSelectEnd;it++,srcArrIndexPtr++)
8104 if(*it>=0 && *it<nbOfTuples)
8106 if(srcArrIndexPtr[1]-srcArrIndexPtr[0]==arrIndxInPtr[*it+1]-arrIndxInPtr[*it])
8107 std::copy(srcArrPtr+srcArrIndexPtr[0],srcArrPtr+srcArrIndexPtr[1],arrInOutPtr+arrIndxInPtr[*it]);
8110 std::ostringstream oss; oss << "MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx : On pos #" << std::distance(idsOfSelectBg,it) << " id (idsOfSelectBg[" << std::distance(idsOfSelectBg,it)<< "]) is " << *it << " arrIndxIn[id+1]-arrIndxIn[id]!=srcArrIndex[pos+1]-srcArrIndex[pos] !";
8111 throw INTERP_KERNEL::Exception(oss.str());
8116 std::ostringstream oss; oss << "MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx : On pos #" << std::distance(idsOfSelectBg,it) << " value is " << *it << " not in [0," << nbOfTuples << ") !";
8117 throw INTERP_KERNEL::Exception(oss.str());
8123 * This method works on a pair input (\b arrIn, \b arrIndxIn) where \b arr indexes is in \b arrIndxIn.
8124 * This method expects that these two input arrays come from the output of MEDCouplingUMesh::computeNeighborsOfCells method.
8125 * This method start from id 0 that will be contained in output DataArrayInt. It searches then all neighbors of id0 looking at arrIn[arrIndxIn[0]:arrIndxIn[0+1]].
8126 * Then it is repeated recursively until either all ids are fetched or no more ids are reachable step by step.
8127 * A negative value in \b arrIn means that it is ignored.
8128 * This method is useful to see if a mesh is contiguous regarding its connectivity. If it is not the case the size of returned array is different from arrIndxIn->getNumberOfTuples()-1.
8130 * \param [in] arrIn arr origin array from which the extraction will be done.
8131 * \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
8132 * \return a newly allocated DataArray that stores all ids fetched by the gradually spread process.
8133 * \sa MEDCouplingUMesh::ComputeSpreadZoneGraduallyFromSeed, MEDCouplingUMesh::partitionBySpreadZone
8135 DataArrayInt *MEDCouplingUMesh::ComputeSpreadZoneGradually(const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn)
8137 int seed=0,nbOfDepthPeelingPerformed=0;
8138 return ComputeSpreadZoneGraduallyFromSeed(&seed,&seed+1,arrIn,arrIndxIn,-1,nbOfDepthPeelingPerformed);
8142 * This method works on a pair input (\b arrIn, \b arrIndxIn) where \b arr indexes is in \b arrIndxIn.
8143 * This method expects that these two input arrays come from the output of MEDCouplingUMesh::computeNeighborsOfCells method.
8144 * This method start from id 0 that will be contained in output DataArrayInt. It searches then all neighbors of id0 regarding arrIn[arrIndxIn[0]:arrIndxIn[0+1]].
8145 * Then it is repeated recursively until either all ids are fetched or no more ids are reachable step by step.
8146 * A negative value in \b arrIn means that it is ignored.
8147 * This method is useful to see if a mesh is contiguous regarding its connectivity. If it is not the case the size of returned array is different from arrIndxIn->getNumberOfTuples()-1.
8148 * \param [in] seedBg the begin pointer (included) of an array containing the seed of the search zone
8149 * \param [in] seedEnd the end pointer (not included) of an array containing the seed of the search zone
8150 * \param [in] arrIn arr origin array from which the extraction will be done.
8151 * \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
8152 * \param [in] nbOfDepthPeeling the max number of peels requested in search. By default -1, that is to say, no limit.
8153 * \param [out] nbOfDepthPeelingPerformed the number of peels effectively performed. May be different from \a nbOfDepthPeeling
8154 * \return a newly allocated DataArray that stores all ids fetched by the gradually spread process.
8155 * \sa MEDCouplingUMesh::partitionBySpreadZone
8157 DataArrayInt *MEDCouplingUMesh::ComputeSpreadZoneGraduallyFromSeed(const int *seedBg, const int *seedEnd, const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn, int nbOfDepthPeeling, int& nbOfDepthPeelingPerformed)
8159 nbOfDepthPeelingPerformed=0;
8161 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ComputeSpreadZoneGraduallyFromSeed : arrIndxIn input pointer is NULL !");
8162 int nbOfTuples=arrIndxIn->getNumberOfTuples()-1;
8165 DataArrayInt *ret=DataArrayInt::New(); ret->alloc(0,1);
8169 std::vector<bool> fetched(nbOfTuples,false);
8170 return ComputeSpreadZoneGraduallyFromSeedAlg(fetched,seedBg,seedEnd,arrIn,arrIndxIn,nbOfDepthPeeling,nbOfDepthPeelingPerformed);
8175 * This method works on an input pair (\b arrIn, \b arrIndxIn) where \b arrIn indexes is in \b arrIndxIn.
8176 * This method builds an output pair (\b arrOut,\b arrIndexOut) that is a copy from \b arrIn for all cell ids \b not \b in [ \b idsOfSelectBg , \b idsOfSelectEnd ) and for
8177 * cellIds \b in [\b idsOfSelectBg, \b idsOfSelectEnd) a copy coming from the corresponding values in input pair (\b srcArr, \b srcArrIndex).
8178 * This method is an generalization of MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx that performs the same thing but by without building explicitly a result output arrays.
8180 * \param [in] start begin of set of ids of the input extraction (included)
8181 * \param [in] end end of set of ids of the input extraction (excluded)
8182 * \param [in] step step of the set of ids in range mode.
8183 * \param [in] arrIn arr origin array from which the extraction will be done.
8184 * \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
8185 * \param [in] srcArr input array that will be used as source of copy for ids in [\b idsOfSelectBg, \b idsOfSelectEnd)
8186 * \param [in] srcArrIndex index array of \b srcArr
8187 * \param [out] arrOut the resulting array
8188 * \param [out] arrIndexOut the index array of the resulting array \b arrOut
8190 * \sa MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx MEDCouplingUMesh::SetPartOfIndexedArrays
8192 void MEDCouplingUMesh::SetPartOfIndexedArraysSlice(int start, int end, int step, const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn,
8193 const DataArrayInt *srcArr, const DataArrayInt *srcArrIndex,
8194 DataArrayInt* &arrOut, DataArrayInt* &arrIndexOut)
8196 if(arrIn==0 || arrIndxIn==0 || srcArr==0 || srcArrIndex==0)
8197 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::SetPartOfIndexedArraysSlice : presence of null pointer in input parameter !");
8198 MCAuto<DataArrayInt> arro=DataArrayInt::New();
8199 MCAuto<DataArrayInt> arrIo=DataArrayInt::New();
8200 int nbOfTuples=arrIndxIn->getNumberOfTuples()-1;
8202 const int *arrIndxInPtr=arrIndxIn->begin();
8203 const int *srcArrIndexPtr=srcArrIndex->begin();
8204 int nbOfElemsToSet=DataArray::GetNumberOfItemGivenBESRelative(start,end,step,"MEDCouplingUMesh::SetPartOfIndexedArraysSlice : ");
8206 for(int i=0;i<nbOfElemsToSet;i++,srcArrIndexPtr++,it+=step)
8208 if(it>=0 && it<nbOfTuples)
8209 offset+=(srcArrIndexPtr[1]-srcArrIndexPtr[0])-(arrIndxInPtr[it+1]-arrIndxInPtr[it]);
8212 std::ostringstream oss; oss << "MEDCouplingUMesh::SetPartOfIndexedArraysSlice : On pos #" << i << " value is " << it << " not in [0," << nbOfTuples << ") !";
8213 throw INTERP_KERNEL::Exception(oss.str());
8216 srcArrIndexPtr=srcArrIndex->begin();
8217 arrIo->alloc(nbOfTuples+1,1);
8218 arro->alloc(arrIn->getNumberOfTuples()+offset,1);
8219 const int *arrInPtr=arrIn->begin();
8220 const int *srcArrPtr=srcArr->begin();
8221 int *arrIoPtr=arrIo->getPointer(); *arrIoPtr++=0;
8222 int *arroPtr=arro->getPointer();
8223 for(int ii=0;ii<nbOfTuples;ii++,arrIoPtr++)
8225 int pos=DataArray::GetPosOfItemGivenBESRelativeNoThrow(ii,start,end,step);
8228 arroPtr=std::copy(arrInPtr+arrIndxInPtr[ii],arrInPtr+arrIndxInPtr[ii+1],arroPtr);
8229 *arrIoPtr=arrIoPtr[-1]+(arrIndxInPtr[ii+1]-arrIndxInPtr[ii]);
8233 arroPtr=std::copy(srcArrPtr+srcArrIndexPtr[pos],srcArrPtr+srcArrIndexPtr[pos+1],arroPtr);
8234 *arrIoPtr=arrIoPtr[-1]+(srcArrIndexPtr[pos+1]-srcArrIndexPtr[pos]);
8238 arrIndexOut=arrIo.retn();
8242 * This method works on an input pair (\b arrIn, \b arrIndxIn) where \b arrIn indexes is in \b arrIndxIn.
8243 * This method is an specialization of MEDCouplingUMesh::SetPartOfIndexedArrays in the case of assignment do not modify the index in \b arrIndxIn.
8245 * \param [in] start begin of set of ids of the input extraction (included)
8246 * \param [in] end end of set of ids of the input extraction (excluded)
8247 * \param [in] step step of the set of ids in range mode.
8248 * \param [in,out] arrInOut arr origin array from which the extraction will be done.
8249 * \param [in] arrIndxIn is the input index array allowing to walk into \b arrIn
8250 * \param [in] srcArr input array that will be used as source of copy for ids in [\b idsOfSelectBg, \b idsOfSelectEnd)
8251 * \param [in] srcArrIndex index array of \b srcArr
8253 * \sa MEDCouplingUMesh::SetPartOfIndexedArraysSlice MEDCouplingUMesh::SetPartOfIndexedArraysSameIdx
8255 void MEDCouplingUMesh::SetPartOfIndexedArraysSameIdxSlice(int start, int end, int step, DataArrayInt *arrInOut, const DataArrayInt *arrIndxIn,
8256 const DataArrayInt *srcArr, const DataArrayInt *srcArrIndex)
8258 if(arrInOut==0 || arrIndxIn==0 || srcArr==0 || srcArrIndex==0)
8259 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::SetPartOfIndexedArraysSameIdxSlice : presence of null pointer in input parameter !");
8260 int nbOfTuples=arrIndxIn->getNumberOfTuples()-1;
8261 const int *arrIndxInPtr=arrIndxIn->begin();
8262 const int *srcArrIndexPtr=srcArrIndex->begin();
8263 int *arrInOutPtr=arrInOut->getPointer();
8264 const int *srcArrPtr=srcArr->begin();
8265 int nbOfElemsToSet=DataArray::GetNumberOfItemGivenBESRelative(start,end,step,"MEDCouplingUMesh::SetPartOfIndexedArraysSameIdxSlice : ");
8267 for(int i=0;i<nbOfElemsToSet;i++,srcArrIndexPtr++,it+=step)
8269 if(it>=0 && it<nbOfTuples)
8271 if(srcArrIndexPtr[1]-srcArrIndexPtr[0]==arrIndxInPtr[it+1]-arrIndxInPtr[it])
8272 std::copy(srcArrPtr+srcArrIndexPtr[0],srcArrPtr+srcArrIndexPtr[1],arrInOutPtr+arrIndxInPtr[it]);
8275 std::ostringstream oss; oss << "MEDCouplingUMesh::SetPartOfIndexedArraysSameIdxSlice : On pos #" << i << " id (idsOfSelectBg[" << i << "]) is " << it << " arrIndxIn[id+1]-arrIndxIn[id]!=srcArrIndex[pos+1]-srcArrIndex[pos] !";
8276 throw INTERP_KERNEL::Exception(oss.str());
8281 std::ostringstream oss; oss << "MEDCouplingUMesh::SetPartOfIndexedArraysSameIdxSlice : On pos #" << i << " value is " << it << " not in [0," << nbOfTuples << ") !";
8282 throw INTERP_KERNEL::Exception(oss.str());
8288 * \b this is expected to be a mesh fully defined whose spaceDim==meshDim.
8289 * It returns a new allocated mesh having the same mesh dimension and lying on same coordinates.
8290 * The returned mesh contains as poly cells as number of contiguous zone (regarding connectivity).
8291 * A spread contiguous zone is built using poly cells (polyhedra in 3D, polygons in 2D and polyline in 1D).
8292 * The sum of measure field of returned mesh is equal to the sum of measure field of this.
8294 * \return a newly allocated mesh lying on the same coords than \b this with same meshdimension than \b this.
8296 MEDCouplingUMesh *MEDCouplingUMesh::buildSpreadZonesWithPoly() const
8298 checkFullyDefined();
8299 int mdim=getMeshDimension();
8300 int spaceDim=getSpaceDimension();
8302 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSpreadZonesWithPoly : meshdimension and spacedimension do not match !");
8303 std::vector<DataArrayInt *> partition=partitionBySpreadZone();
8304 std::vector< MCAuto<DataArrayInt> > partitionAuto; partitionAuto.reserve(partition.size());
8305 std::copy(partition.begin(),partition.end(),std::back_insert_iterator<std::vector< MCAuto<DataArrayInt> > >(partitionAuto));
8306 MCAuto<MEDCouplingUMesh> ret=MEDCouplingUMesh::New(getName(),mdim);
8307 ret->setCoords(getCoords());
8308 ret->allocateCells((int)partition.size());
8310 for(std::vector<DataArrayInt *>::const_iterator it=partition.begin();it!=partition.end();it++)
8312 MCAuto<MEDCouplingUMesh> tmp=static_cast<MEDCouplingUMesh *>(buildPartOfMySelf((*it)->begin(),(*it)->end(),true));
8313 MCAuto<DataArrayInt> cell;
8317 cell=tmp->buildUnionOf2DMesh();
8320 cell=tmp->buildUnionOf3DMesh();
8323 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::buildSpreadZonesWithPoly : meshdimension supported are [2,3] ! Not implemented yet for others !");
8326 ret->insertNextCell((INTERP_KERNEL::NormalizedCellType)cell->getIJSafe(0,0),cell->getNumberOfTuples()-1,cell->begin()+1);
8329 ret->finishInsertingCells();
8334 * This method partitions \b this into contiguous zone.
8335 * This method only needs a well defined connectivity. Coordinates are not considered here.
8336 * This method returns a vector of \b newly allocated arrays that the caller has to deal with.
8338 std::vector<DataArrayInt *> MEDCouplingUMesh::partitionBySpreadZone() const
8340 DataArrayInt *neigh=0,*neighI=0;
8341 computeNeighborsOfCells(neigh,neighI);
8342 MCAuto<DataArrayInt> neighAuto(neigh),neighIAuto(neighI);
8343 return PartitionBySpreadZone(neighAuto,neighIAuto);
8346 std::vector<DataArrayInt *> MEDCouplingUMesh::PartitionBySpreadZone(const DataArrayInt *arrIn, const DataArrayInt *arrIndxIn)
8348 if(!arrIn || !arrIndxIn)
8349 throw INTERP_KERNEL::Exception("PartitionBySpreadZone : null input pointers !");
8350 arrIn->checkAllocated(); arrIndxIn->checkAllocated();
8351 int nbOfTuples(arrIndxIn->getNumberOfTuples());
8352 if(arrIn->getNumberOfComponents()!=1 || arrIndxIn->getNumberOfComponents()!=1 || nbOfTuples<1)
8353 throw INTERP_KERNEL::Exception("PartitionBySpreadZone : invalid arrays in input !");
8354 int nbOfCellsCur(nbOfTuples-1);
8355 std::vector<DataArrayInt *> ret;
8358 std::vector<bool> fetchedCells(nbOfCellsCur,false);
8359 std::vector< MCAuto<DataArrayInt> > ret2;
8361 while(seed<nbOfCellsCur)
8363 int nbOfPeelPerformed=0;
8364 ret2.push_back(ComputeSpreadZoneGraduallyFromSeedAlg(fetchedCells,&seed,&seed+1,arrIn,arrIndxIn,-1,nbOfPeelPerformed));
8365 seed=(int)std::distance(fetchedCells.begin(),std::find(fetchedCells.begin()+seed,fetchedCells.end(),false));
8367 for(std::vector< MCAuto<DataArrayInt> >::iterator it=ret2.begin();it!=ret2.end();it++)
8368 ret.push_back((*it).retn());
8373 * This method returns given a distribution of cell type (returned for example by MEDCouplingUMesh::getDistributionOfTypes method and customized after) a
8374 * newly allocated DataArrayInt instance with 2 components ready to be interpreted as input of DataArrayInt::findRangeIdForEachTuple method.
8376 * \param [in] code a code with the same format than those returned by MEDCouplingUMesh::getDistributionOfTypes except for the code[3*k+2] that should contain start id of chunck.
8377 * \return a newly allocated DataArrayInt to be managed by the caller.
8378 * \throw In case of \a code has not the right format (typically of size 3*n)
8380 DataArrayInt *MEDCouplingUMesh::ComputeRangesFromTypeDistribution(const std::vector<int>& code)
8382 MCAuto<DataArrayInt> ret=DataArrayInt::New();
8383 std::size_t nb=code.size()/3;
8384 if(code.size()%3!=0)
8385 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::ComputeRangesFromTypeDistribution : invalid input code !");
8386 ret->alloc((int)nb,2);
8387 int *retPtr=ret->getPointer();
8388 for(std::size_t i=0;i<nb;i++,retPtr+=2)
8390 retPtr[0]=code[3*i+2];
8391 retPtr[1]=code[3*i+2]+code[3*i+1];
8397 * This method expects that \a this a 3D mesh (spaceDim=3 and meshDim=3) with all coordinates and connectivities set.
8398 * All cells in \a this are expected to be linear 3D cells.
8399 * This method will split **all** 3D cells in \a this into INTERP_KERNEL::NORM_TETRA4 cells and put them in the returned mesh.
8400 * It leads to an increase to number of cells.
8401 * This method contrary to MEDCouplingUMesh::simplexize can append coordinates in \a this to perform its work.
8402 * The \a nbOfAdditionalPoints returned value informs about it. If > 0, the coordinates array in returned mesh will have \a nbOfAdditionalPoints
8403 * more tuples (nodes) than in \a this. Anyway, all the nodes in \a this (with the same order) will be in the returned mesh.
8405 * \param [in] policy - the policy of splitting that must be in (PLANAR_FACE_5, PLANAR_FACE_6, GENERAL_24, GENERAL_48). The policy will be used only for INTERP_KERNEL::NORM_HEXA8 cells.
8406 * For all other cells, the splitting policy will be ignored. See INTERP_KERNEL::SplittingPolicy for the images.
8407 * \param [out] nbOfAdditionalPoints - number of nodes added to \c this->_coords. If > 0 a new coordinates object will be constructed result of the aggregation of the old one and the new points added.
8408 * \param [out] n2oCells - A new instance of DataArrayInt holding, for each new cell,
8409 * an id of old cell producing it. The caller is to delete this array using
8410 * decrRef() as it is no more needed.
8411 * \return MEDCoupling1SGTUMesh * - the mesh containing only INTERP_KERNEL::NORM_TETRA4 cells.
8413 * \warning This method operates on each cells in this independently ! So it can leads to non conform mesh in returned value ! If you expect to have a conform mesh in output
8414 * the policy PLANAR_FACE_6 should be used on a mesh sorted with MEDCoupling1SGTUMesh::sortHexa8EachOther.
8416 * \throw If \a this is not a 3D mesh (spaceDim==3 and meshDim==3).
8417 * \throw If \a this is not fully constituted with linear 3D cells.
8418 * \sa MEDCouplingUMesh::simplexize, MEDCoupling1SGTUMesh::sortHexa8EachOther
8420 MEDCoupling1SGTUMesh *MEDCouplingUMesh::tetrahedrize(int policy, DataArrayInt *& n2oCells, int& nbOfAdditionalPoints) const
8422 INTERP_KERNEL::SplittingPolicy pol((INTERP_KERNEL::SplittingPolicy)policy);
8423 checkConnectivityFullyDefined();
8424 if(getMeshDimension()!=3 || getSpaceDimension()!=3)
8425 throw INTERP_KERNEL::Exception("MEDCouplingUMesh::tetrahedrize : only available for mesh with meshdim == 3 and spacedim == 3 !");
8426 int nbOfCells(getNumberOfCells()),nbNodes(getNumberOfNodes());
8427 MCAuto<MEDCoupling1SGTUMesh> ret0(MEDCoupling1SGTUMesh::New(getName(),INTERP_KERNEL::NORM_TETRA4));
8428 MCAuto<DataArrayInt> ret(DataArrayInt::New()); ret->alloc(nbOfCells,1);
8429 int *retPt(ret->getPointer());
8430 MCAuto<DataArrayInt> newConn(DataArrayInt::New()); newConn->alloc(0,1);
8431 MCAuto<DataArrayDouble> addPts(DataArrayDouble::New()); addPts->alloc(0,1);
8432 const int *oldc(_nodal_connec->begin());
8433 const int *oldci(_nodal_connec_index->begin());
8434 const double *coords(_coords->begin());
8435 for(int i=0;i<nbOfCells;i++,oldci++,retPt++)
8437 std::vector<int> a; std::vector<double> b;
8438 INTERP_KERNEL::SplitIntoTetras(pol,(INTERP_KERNEL::NormalizedCellType)oldc[oldci[0]],oldc+oldci[0]+1,oldc+oldci[1],coords,a,b);
8439 std::size_t nbOfTet(a.size()/4); *retPt=(int)nbOfTet;
8440 const int *aa(&a[0]);
8443 for(std::vector<int>::iterator it=a.begin();it!=a.end();it++)
8445 *it=(-(*(it))-1+nbNodes);
8446 addPts->insertAtTheEnd(b.begin(),b.end());
8447 nbNodes+=(int)b.size()/3;
8449 for(std::size_t j=0;j<nbOfTet;j++,aa+=4)
8450 newConn->insertAtTheEnd(aa,aa+4);
8452 if(!addPts->empty())
8454 addPts->rearrange(3);
8455 nbOfAdditionalPoints=addPts->getNumberOfTuples();
8456 addPts=DataArrayDouble::Aggregate(getCoords(),addPts);
8457 ret0->setCoords(addPts);
8461 nbOfAdditionalPoints=0;
8462 ret0->setCoords(getCoords());
8464 ret0->setNodalConnectivity(newConn);
8466 ret->computeOffsetsFull();
8467 n2oCells=ret->buildExplicitArrOfSliceOnScaledArr(0,nbOfCells,1);
8471 MEDCouplingUMeshCellIterator::MEDCouplingUMeshCellIterator(MEDCouplingUMesh *mesh):_mesh(mesh),_cell(new MEDCouplingUMeshCell(mesh)),
8472 _own_cell(true),_cell_id(-1),_nb_cell(0)
8477 _nb_cell=mesh->getNumberOfCells();
8481 MEDCouplingUMeshCellIterator::~MEDCouplingUMeshCellIterator()
8489 MEDCouplingUMeshCellIterator::MEDCouplingUMeshCellIterator(MEDCouplingUMesh *mesh, MEDCouplingUMeshCell *itc, int bg, int end):_mesh(mesh),_cell(itc),
8490 _own_cell(false),_cell_id(bg-1),
8497 MEDCouplingUMeshCell *MEDCouplingUMeshCellIterator::nextt()
8500 if(_cell_id<_nb_cell)
8509 MEDCouplingUMeshCellByTypeEntry::MEDCouplingUMeshCellByTypeEntry(MEDCouplingUMesh *mesh):_mesh(mesh)
8515 MEDCouplingUMeshCellByTypeIterator *MEDCouplingUMeshCellByTypeEntry::iterator()
8517 return new MEDCouplingUMeshCellByTypeIterator(_mesh);
8520 MEDCouplingUMeshCellByTypeEntry::~MEDCouplingUMeshCellByTypeEntry()
8526 MEDCouplingUMeshCellEntry::MEDCouplingUMeshCellEntry(MEDCouplingUMesh *mesh, INTERP_KERNEL::NormalizedCellType type, MEDCouplingUMeshCell *itc, int bg, int end):_mesh(mesh),_type(type),
8534 MEDCouplingUMeshCellEntry::~MEDCouplingUMeshCellEntry()
8540 INTERP_KERNEL::NormalizedCellType MEDCouplingUMeshCellEntry::getType() const
8545 int MEDCouplingUMeshCellEntry::getNumberOfElems() const
8550 MEDCouplingUMeshCellIterator *MEDCouplingUMeshCellEntry::iterator()
8552 return new MEDCouplingUMeshCellIterator(_mesh,_itc,_bg,_end);
8555 MEDCouplingUMeshCellByTypeIterator::MEDCouplingUMeshCellByTypeIterator(MEDCouplingUMesh *mesh):_mesh(mesh),_cell(new MEDCouplingUMeshCell(mesh)),_cell_id(0),_nb_cell(0)
8560 _nb_cell=mesh->getNumberOfCells();
8564 MEDCouplingUMeshCellByTypeIterator::~MEDCouplingUMeshCellByTypeIterator()
8571 MEDCouplingUMeshCellEntry *MEDCouplingUMeshCellByTypeIterator::nextt()
8573 const int *c=_mesh->getNodalConnectivity()->begin();
8574 const int *ci=_mesh->getNodalConnectivityIndex()->begin();
8575 if(_cell_id<_nb_cell)
8577 INTERP_KERNEL::NormalizedCellType type=(INTERP_KERNEL::NormalizedCellType)c[ci[_cell_id]];
8578 int nbOfElems=(int)std::distance(ci+_cell_id,std::find_if(ci+_cell_id,ci+_nb_cell,MEDCouplingImpl::ConnReader(c,type)));
8579 int startId=_cell_id;
8580 _cell_id+=nbOfElems;
8581 return new MEDCouplingUMeshCellEntry(_mesh,type,_cell,startId,_cell_id);
8587 MEDCouplingUMeshCell::MEDCouplingUMeshCell(MEDCouplingUMesh *mesh):_conn(0),_conn_indx(0),_conn_lgth(NOTICABLE_FIRST_VAL)
8591 _conn=mesh->getNodalConnectivity()->getPointer();
8592 _conn_indx=mesh->getNodalConnectivityIndex()->getPointer();
8596 void MEDCouplingUMeshCell::next()
8598 if(_conn_lgth!=NOTICABLE_FIRST_VAL)
8603 _conn_lgth=_conn_indx[1]-_conn_indx[0];
8606 std::string MEDCouplingUMeshCell::repr() const
8608 if(_conn_lgth!=NOTICABLE_FIRST_VAL)
8610 std::ostringstream oss; oss << "Cell Type " << INTERP_KERNEL::CellModel::GetCellModel((INTERP_KERNEL::NormalizedCellType)_conn[0]).getRepr();
8612 std::copy(_conn+1,_conn+_conn_lgth,std::ostream_iterator<int>(oss," "));
8616 return std::string("MEDCouplingUMeshCell::repr : Invalid pos");
8619 INTERP_KERNEL::NormalizedCellType MEDCouplingUMeshCell::getType() const
8621 if(_conn_lgth!=NOTICABLE_FIRST_VAL)
8622 return (INTERP_KERNEL::NormalizedCellType)_conn[0];
8624 return INTERP_KERNEL::NORM_ERROR;
8627 const int *MEDCouplingUMeshCell::getAllConn(int& lgth) const
8630 if(_conn_lgth!=NOTICABLE_FIRST_VAL)