1 <?xml version='1.0' encoding='iso-8859-1' ?>
3 Copyright (C) 2010-2013 EDF R&D
5 This library is free software; you can redistribute it and/or
6 modify it under the terms of the GNU Lesser General Public
7 License as published by the Free Software Foundation; either
8 version 2.1 of the License.
10 This library is distributed in the hope that it will be useful,
11 but WITHOUT ANY WARRANTY; without even the implied warranty of
12 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
13 Lesser General Public License for more details.
15 You should have received a copy of the GNU Lesser General Public
16 License along with this library; if not, write to the Free Software
17 Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
19 See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
21 Author: Jean-Philippe Argaud, jean-philippe.argaud@edf.fr, EDF R&D
25 <objref name="computeAD" id="python:computeAD:1.0">
29 <!-- Types for parametric computations -->
30 <!-- TODO On devrait pouvoir le lire depuis le KERNEL !!!-->
31 <type name="long" kind="int"/>
32 <struct name="SALOME_TYPES/Parameter">
33 <member type="string" name="name"></member>
34 <member type="string" name="value"></member>
36 <sequence content="SALOME_TYPES/Parameter" name="SALOME_TYPES/ParameterList"></sequence>
37 <sequence content="double" name="SALOME_TYPES/Variable"></sequence>
38 <sequence content="SALOME_TYPES/Variable" name="SALOME_TYPES/VariableSequence"></sequence>
39 <sequence content="SALOME_TYPES/VariableSequence" name="SALOME_TYPES/StateSequence"></sequence>
40 <sequence content="SALOME_TYPES/StateSequence" name="SALOME_TYPES/TimeSequence"></sequence>
41 <sequence content="string" name="SALOME_TYPES/VarList"></sequence>
42 <struct name="SALOME_TYPES/ParametricInput">
43 <member type="SALOME_TYPES/VarList" name="inputVarList"></member>
44 <member type="SALOME_TYPES/VarList" name="outputVarList"></member>
45 <member type="SALOME_TYPES/TimeSequence" name="inputValues"></member>
46 <member type="SALOME_TYPES/ParameterList" name="specificParameters"></member>
48 <struct name="SALOME_TYPES/ParametricOutput">
49 <member type="SALOME_TYPES/TimeSequence" name="outputValues"></member>
50 <member type="SALOME_TYPES/ParameterList" name="specificOutputInfos"></member>
51 <member type="long" name="returnCode"></member>
52 <member type="string" name="errorMessage"></member>
56 <inline name="CreateAssimilationStudy">
61 logging.debug("CREATE Entering in CreateAssimilationStudy")
62 print "Entering in the assimilation study"
63 print "Name is set to........:", Name
64 print "Algorithm is set to...:", Algorithm
66 # Create Assimilation study
67 from daYacsIntegration.daStudy import *
68 assim_study = daStudy(Name, Algorithm, Debug)
70 logging.debug("CREATE Data entered are:")
72 # Algorithm parameters
78 logging.debug("CREATE AlgorithmParameters is %s"%AlgorithmParameters)
79 assim_study.setAlgorithmParameters(AlgorithmParameters)
87 logging.debug("CREATE Background is set")
88 logging.debug("CREATE BackgroundType is %s"%BackgroundType)
89 logging.debug("CREATE BackgroundStored is %s"%BackgroundStored)
90 assim_study.setBackgroundType(BackgroundType)
91 assim_study.setBackgroundStored(BackgroundStored)
92 assim_study.setBackground(Background)
100 logging.debug("CREATE CheckingPoint is set")
101 logging.debug("CREATE CheckingPointType is %s"%CheckingPointType)
102 logging.debug("CREATE CheckingPointStored is %s"%CheckingPointStored)
103 assim_study.setCheckingPointType(CheckingPointType)
104 assim_study.setCheckingPointStored(CheckingPointStored)
105 assim_study.setCheckingPoint(CheckingPoint)
113 logging.debug("CREATE ControlInput is set")
114 logging.debug("CREATE ControlInputType is %s"%ControlInputType)
115 logging.debug("CREATE ControlInputStored is %s"%ControlInputStored)
116 assim_study.setControlInputType(ControlInputType)
117 assim_study.setControlInputStored(ControlInputStored)
118 assim_study.setControlInput(ControlInput)
126 logging.debug("CREATE Observation is set")
127 logging.debug("CREATE ObservationType is %s"%ObservationType)
128 logging.debug("CREATE ObservationStored is %s"%ObservationStored)
129 assim_study.setObservationType(ObservationType)
130 assim_study.setObservationStored(ObservationStored)
131 assim_study.setObservation(Observation)
139 logging.debug("CREATE BackgroundError is set")
140 logging.debug("CREATE BackgroundErrorType is %s"%BackgroundErrorType)
141 logging.debug("CREATE BackgroundErrorStored is %s"%BackgroundErrorStored)
142 assim_study.setBackgroundErrorType(BackgroundErrorType)
143 assim_study.setBackgroundErrorStored(BackgroundErrorStored)
144 assim_study.setBackgroundError(BackgroundError)
152 logging.debug("CREATE ObservationError is set")
153 logging.debug("CREATE ObservationErrorType is %s"%ObservationErrorType)
154 logging.debug("CREATE ObservationErrorStored is %s"%ObservationErrorStored)
155 assim_study.setObservationErrorType(ObservationErrorType)
156 assim_study.setObservationErrorStored(ObservationErrorStored)
157 assim_study.setObservationError(ObservationError)
165 logging.debug("CREATE EvolutionError is set")
166 logging.debug("CREATE EvolutionErrorStored is %s"%EvolutionErrorStored)
167 assim_study.setEvolutionErrorStored(EvolutionErrorStored)
168 assim_study.setEvolutionError(EvolutionError)
170 # ObservationOperator
171 ObservationOperatorOk = 0
177 logging.debug("CREATE ObservationOperator is set")
178 logging.debug("CREATE ObservationOperatorType is %s"%ObservationOperatorType)
179 assim_study.setObservationOperatorType("Matrix", ObservationOperatorType)
180 assim_study.setObservationOperator("Matrix", ObservationOperator)
181 ObservationOperatorOk = 1
183 if ObservationOperatorOk == 0:
185 ObservationOperatorDirect
189 logging.debug("CREATE ObservationOperatorDirect is %s"%ObservationOperatorDirect)
190 assim_study.setObservationOperatorType("Direct", "Function")
191 assim_study.setObservationOperator("Direct", ObservationOperatorDirect)
193 ObservationOperatorTangent
197 logging.debug("CREATE ObservationOperatorTangent is %s"%ObservationOperatorTangent)
198 assim_study.setObservationOperatorType("Tangent", "Function")
199 assim_study.setObservationOperator("Tangent", ObservationOperatorTangent)
201 ObservationOperatorAdjoint
205 logging.debug("CREATE ObservationOperatorAdjoint is %s"%ObservationOperatorAdjoint)
206 assim_study.setObservationOperatorType("Adjoint", "Function")
207 assim_study.setObservationOperator("Adjoint", ObservationOperatorAdjoint)
216 logging.debug("CREATE EvolutionModel is set")
217 logging.debug("CREATE EvolutionModelType is %s"%EvolutionModelType)
218 assim_study.setEvolutionModelType("Matrix", EvolutionModelType)
219 assim_study.setEvolutionModel("Matrix", EvolutionModel)
222 if EvolutionModelOk == 0:
228 logging.debug("CREATE EvolutionModelDirect is %s"%EvolutionModelDirect)
229 assim_study.setEvolutionModelType("Direct", "Function")
230 assim_study.setEvolutionModel("Direct", EvolutionModelDirect)
232 EvolutionModelTangent
236 logging.debug("CREATE EvolutionModelTangent is %s"%EvolutionModelTangent)
237 assim_study.setEvolutionModelType("Tangent", "Function")
238 assim_study.setEvolutionModel("Tangent", EvolutionModelTangent)
240 EvolutionModelAdjoint
244 logging.debug("CREATE EvolutionModelAdjoint is %s"%EvolutionModelAdjoint)
245 assim_study.setEvolutionModelType("Adjoint", "Function")
246 assim_study.setEvolutionModel("Adjoint", EvolutionModelAdjoint)
249 for name, size in zip(InputVariablesNames, InputVariablesSizes):
250 assim_study.setInputVariable(name, size)
251 for name, size in zip(OutputVariablesNames, OutputVariablesSizes):
252 assim_study.setOutputVariable(name, size)
255 logging.debug("CREATE Observers keys are %s"%observers.keys())
256 # Adding observers to the study
257 for observer_name in observers.keys():
260 number = str(observers[observer_name]["number"])
261 if "scheduler" in observers[observer_name].keys():
262 scheduler = observers[observer_name]["scheduler"]
263 if "info" in observers[observer_name].keys():
264 info = observers[observer_name]["info"]
265 assim_study.addObserver(observer_name, scheduler, info, number)
270 <inport name="Name" type="string"/>
271 <inport name="Algorithm" type="string"/>
272 <inport name="Debug" type="bool"/>
273 <inport name="InputVariablesNames" type="stringvec"/>
274 <inport name="InputVariablesSizes" type="intvec"/>
275 <inport name="OutputVariablesNames" type="stringvec"/>
276 <inport name="OutputVariablesSizes" type="intvec"/>
277 <inport name="has_observers" type="bool"/>
278 <inport name="observers" type="pyobj"/>
279 <outport name="Study" type="pyobj"/>
282 <inline name="CreateNumpyMatrixFromString">
283 <script><code><![CDATA[
284 import numpy, logging
285 logging.debug("CREATE Entering in CreateNumpyMatrixFromString")
286 matrix = numpy.matrix(matrix_in_string)
288 logging.debug("CREATE Matrix is %s"%matrix)
290 <inport name="matrix_in_string" type="string"/>
291 <outport name="matrix" type="pyobj"/>
292 <outport name="type" type="string"/>
293 <outport name="stored" type="bool"/>
296 <inline name="CreateNumpyScalarSparseMatrixFromString">
297 <script><code><![CDATA[
298 import numpy, logging
299 logging.debug("CREATE Entering in CreateNumpyScalarSparseMatrixFromString")
300 matrix = numpy.matrix(matrix_in_string)
301 type = "ScalarSparseMatrix"
302 logging.debug("CREATE ScalarSparseMatrix is %s"%matrix)
304 <inport name="matrix_in_string" type="string"/>
305 <outport name="matrix" type="pyobj"/>
306 <outport name="type" type="string"/>
307 <outport name="stored" type="bool"/>
310 <inline name="CreateNumpyDiagonalSparseMatrixFromString">
311 <script><code><![CDATA[
312 import numpy, logging
313 logging.debug("CREATE Entering in CreateNumpyDiagonalSparseMatrixFromString")
314 matrix = numpy.matrix(matrix_in_string)
315 type = "DiagonalSparseMatrix"
316 logging.debug("CREATE DiagonalSparseMatrix is %s"%matrix)
318 <inport name="matrix_in_string" type="string"/>
319 <outport name="matrix" type="pyobj"/>
320 <outport name="type" type="string"/>
321 <outport name="stored" type="bool"/>
324 <inline name="CreateNumpyMatrixFromScript">
325 <script><code><![CDATA[
327 logging.debug("CREATE Entering in CreateNumpyMatrixFromScript")
330 # Get file path and filename
333 filepath = os.path.dirname(script)
334 filename = os.path.basename(script)
335 module_name = os.path.splitext(filename)[0]
336 if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath)>0):
337 sys.path.insert(0,filepath)
340 __import__(module_name)
341 user_script_module = sys.modules[module_name]
343 # Get Data from script
345 <inport name="script" type="string"/>
346 <outport name="type" type="string"/>
347 <outport name="stored" type="bool"/>
350 <inline name="CreateNumpyScalarSparseMatrixFromScript">
351 <script><code><![CDATA[
353 logging.debug("CREATE Entering in CreateNumpyScalarSparseMatrixFromScript")
354 type = "ScalarSparseMatrix"
356 # Get file path and filename
359 filepath = os.path.dirname(script)
360 filename = os.path.basename(script)
361 module_name = os.path.splitext(filename)[0]
362 if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath)>0):
363 sys.path.insert(0,filepath)
366 __import__(module_name)
367 user_script_module = sys.modules[module_name]
369 # Get Data from script
371 <inport name="script" type="string"/>
372 <outport name="type" type="string"/>
373 <outport name="stored" type="bool"/>
376 <inline name="CreateNumpyDiagonalSparseMatrixFromScript">
377 <script><code><![CDATA[
379 logging.debug("CREATE Entering in CreateNumpyDiagonalSparseMatrixFromScript")
380 type = "DiagonalSparseMatrix"
382 # Get file path and filename
385 filepath = os.path.dirname(script)
386 filename = os.path.basename(script)
387 module_name = os.path.splitext(filename)[0]
388 if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath)>0):
389 sys.path.insert(0,filepath)
392 __import__(module_name)
393 user_script_module = sys.modules[module_name]
395 # Get Data from script
397 <inport name="script" type="string"/>
398 <outport name="type" type="string"/>
399 <outport name="stored" type="bool"/>
402 <inline name="CreateNumpyVectorFromString">
403 <script><code><![CDATA[
404 import numpy, logging
405 logging.debug("CREATE Entering in CreateNumpyVectorFromString")
406 vector = numpy.matrix(vector_in_string)
408 logging.debug("Vector is %s"%vector)
410 <inport name="vector_in_string" type="string"/>
411 <outport name="vector" type="pyobj"/>
412 <outport name="type" type="string"/>
413 <outport name="stored" type="bool"/>
416 <inline name="CreateNumpyVectorFromScript">
417 <script><code><![CDATA[
419 logging.debug("CREATE Entering in CreateNumpyVectorFromScript")
422 # Get file path and filename
425 filepath = os.path.dirname(script)
426 filename = os.path.basename(script)
427 module_name = os.path.splitext(filename)[0]
428 if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath)>0):
429 sys.path.insert(0,filepath)
432 __import__(module_name)
433 user_script_module = sys.modules[module_name]
435 # Get Data from script
437 <inport name="script" type="string"/>
438 <outport name="type" type="string"/>
439 <outport name="stored" type="bool"/>
442 <inline name="CreateNumpyVectorSerieFromString">
443 <script><code><![CDATA[
444 import numpy, logging
445 logging.debug("CREATE Entering in CreateNumpyVectorSerieFromString")
446 vector_in_list = eval(str(vector_in_string),{},{})
447 vector = numpy.matrix(vector_in_list)
449 logging.debug("VectorSerie is %s"%vector)
451 <inport name="vector_in_string" type="string"/>
452 <outport name="vector" type="pyobj"/>
453 <outport name="type" type="string"/>
454 <outport name="stored" type="bool"/>
457 <inline name="CreateNumpyVectorSerieFromScript">
458 <script><code><![CDATA[
460 logging.debug("CREATE Entering in CreateNumpyVectorSerieFromScript")
463 # Get file path and filename
466 filepath = os.path.dirname(script)
467 filename = os.path.basename(script)
468 module_name = os.path.splitext(filename)[0]
469 if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath)>0):
470 sys.path.insert(0,filepath)
473 __import__(module_name)
474 user_script_module = sys.modules[module_name]
476 # Get Data from script
478 <inport name="script" type="string"/>
479 <outport name="type" type="string"/>
480 <outport name="stored" type="bool"/>
483 <inline name="SimpleExecuteDirectAlgorithm">
484 <script><code><![CDATA[
486 logging.debug("EXECUTE Entering in SimpleExecuteDirectAlgorithm")
487 from daYacsIntegration.daStudy import *
488 ADD = Study.getAssimilationStudy()
491 <inport name="Study" type="pyobj"/>
492 <outport name="Study" type="pyobj"/>
495 <inline name="SimpleUserAnalysis">
496 <script><code><![CDATA[
497 #-*-coding:iso-8859-1-*-
499 logging.debug("TERMINATE Entering in SimpleUserAnalysis")
500 from daYacsIntegration.daStudy import *
501 ADD = Study.getAssimilationStudy()
505 <inport name="Study" type="pyobj"/>
508 <inline name="FakeOptimizerLoopNode">
509 <script><code><![CDATA[
511 logging.debug("EXECUTE Entering in FakeOptimizerLoopNode")
514 <inport name="computation" type="SALOME_TYPES/ParametricInput"/>
515 <outport name="result" type="SALOME_TYPES/ParametricOutput"/>
518 <inline name="CreateDictFromScript">
519 <script><code><![CDATA[
521 logging.debug("CREATE Entering in CreateDictFromScript")
523 # Get file path and filename
526 filepath = os.path.dirname(script)
527 filename = os.path.basename(script)
528 module_name = os.path.splitext(filename)[0]
529 if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath)>0):
530 sys.path.insert(0,filepath)
533 __import__(module_name)
534 user_script_module = sys.modules[module_name]
536 # Get Data from script
538 <inport name="script" type="string"/>
541 <inline name="UserDataInitFromScript">
542 <script><code><![CDATA[
544 logging.debug("CREATE Entering in UserDataInitFromScript")
546 # Get file path and filename
549 filepath = os.path.dirname(script)
550 filename = os.path.basename(script)
551 module_name = os.path.splitext(filename)[0]
552 if sys.path.count(filepath)==0 or (sys.path.count(filepath)>0 and sys.path.index(filepath)>0):
553 sys.path.insert(0,filepath)
556 __import__(module_name)
557 user_script_module = sys.modules[module_name]
559 # Get Data from script
561 <inport name="script" type="string"/>
562 <outport name="init_data" type="pyobj"/>
565 <inline name="ReadForSwitchNode">
566 <script><code><![CDATA[
568 logging.debug("CREATE Entering in ReadForSwitchNode")
569 logging.debug(" with input data : "+str(data["specificParameters"]))
571 for param in data["specificParameters"]:
572 if param["name"] == "switch_value":
573 switch_value = int(param["value"])
574 logging.debug(" switching to value : "+str(switch_value))
576 <inport name="data" type="SALOME_TYPES/ParametricInput"/>
577 <outport name="data" type="SALOME_TYPES/ParametricInput"/>
578 <outport name="switch_value" type="int"/>
581 <inline name="ExtractDataNode">
582 <script><code><![CDATA[
584 logging.debug("TERMINATE Entering in ExtractDataNode")
586 from daCore.AssimilationStudy import AssimilationStudy
589 for param in data["specificParameters"]:
590 if param["name"] == "var":
591 var = cPickle.loads(param["value"])
592 if param["name"] == "info":
593 info = param["value"]
595 <inport name="data" type="SALOME_TYPES/ParametricInput"/>
596 <outport name="var" type="pyobj"/>
597 <outport name="info" type="pyobj"/>
600 <inline name="ObservationNodeString">
601 <script><code><![CDATA[
602 #print "Entering in Observation"
605 <inport name="var" type="pyobj"/>
606 <inport name="info" type="pyobj"/>
609 <inline name="ObservationNodeFile">
610 <script><code><![CDATA[
611 #print "Entering in Observation"
615 <inport name="var" type="pyobj"/>
616 <inport name="info" type="pyobj"/>
617 <inport name="script" type="string"/>
620 <inline name="EndObservationNode">
621 <script><code><![CDATA[
622 # Create a fake output object.
623 # An observer is always successful.
625 output["outputValues"] = [[[[]]]]
626 output["specificOutputInfos"] = []
627 output["returnCode"] = 0
628 output["errorMessage"] = ""
630 <outport name="output" type="SALOME_TYPES/ParametricOutput"/>
633 <inline name="SetObserversNode">
634 <script><code><![CDATA[
635 #print "Setting observers"
637 <outport name="has_observers" type="bool"/>
638 <outport name="observers" type="pyobj"/>