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[tools/sat_salome.git] / products / compil_scripts / openturns-1.19.sh
1 #!/bin/bash                                                                                                                                                                              
2
3 echo "##########################################################################"
4 echo "openturns" $VERSION
5 echo "##########################################################################"
6
7 # we don't install in python directory -> modify environment as described in INSTALL file
8
9 mkdir -p $PRODUCT_INSTALL/lib/python${PYTHON_VERSION}/site-packages
10 export PATH=$(pwd)/bin:$PATH
11 export PYTHONPATH=$(pwd):$PYTHONPATH
12 export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages:$PYTHONPATH
13
14 CMAKE_OPTIONS=""
15 if [ -n "$SAT_HPC" ] && [ -n "$MPI_ROOT_DIR" ]; then
16     echo "WARNING: setting CC and CXX environment variables and target MPI wrapper"
17     CMAKE_OPTIONS+=" -DCMAKE_CXX_COMPILER:STRING=${MPI_CXX_COMPILER}"
18     CMAKE_OPTIONS+=" -DCMAKE_C_COMPILER:STRING=${MPI_C_COMPILER}"
19 fi
20
21 CMAKE_OPTIONS+=" -DCMAKE_INSTALL_PREFIX:STRING=${PRODUCT_INSTALL}"
22 CMAKE_OPTIONS+=" -DCMAKE_INSTALL_LIBDIR:STRING=lib"
23 CMAKE_OPTIONS+=" -DCMAKE_BUILD_TYPE:STRING=Release"
24 CMAKE_OPTIONS+=" -DPYTHON_EXECUTABLE=${PYTHONBIN}"
25
26 if [ -n "$SWIG_ROOT_DIR" ] && [ "$SAT_swig_IS_NATIVE" != "1" ]; then
27     CMAKE_OPTIONS+=" -DSWIG_EXECUTABLE=${SWIG_ROOT_DIR}/bin/swig"
28 fi
29
30 if [ -n "$TBB_ROOT_DIR" ] && [ "$SAT_tbb_IS_NATIVE" != "1" ]; then
31     CMAKE_OPTIONS+=" -DTBB_ROOT_DIR=${TBB_ROOT_DIR}"
32     CMAKE_OPTIONS+=" -Dtbb_DIR=${TBB_ROOT_DIR}/lib/cmake"
33 fi
34
35 # https://github.com/persalys/persalys/issues/745
36 LINUX_DISTRIBUTION="$DIST_NAME$DIST_VERSION"
37 case $LINUX_DISTRIBUTION in
38     UB22*|CO8*|CO9*|FD36)
39         echo "WARNING: switching OFF TBB support"
40         CMAKE_OPTIONS+=" -DUSE_TBB=OFF"
41         ;;
42     *)
43         ;;
44 esac
45
46 # Blas/Lapack
47 if [ -n "$LAPACK_ROOT_DIR" ] && [ "$SAT_lapack_IS_NATIVE" != "1" ]; then
48     CMAKE_OPTIONS+=" -DLAPACK_DIR=${LAPACK_ROOT_DIR}/lib/cmake/lapack-3.8.0"
49     CMAKE_OPTIONS+=" -DCBLAS_DIR=${LAPACK_ROOT_DIR}/lib/cmake/cblas-3.8.0"
50     CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libcblas.so"
51     CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libblas.so"
52 fi
53
54 ### libxml2 settings
55 if [ -n "$LIBXML2_ROOT_DIR" ] && [ "$SAT_libxml2_IS_NATIVE" != "1" ]; then
56     CMAKE_OPTIONS+=" -DLIBXML2_INCLUDE_DIR:STRING=${LIBXML2_ROOT_DIR}/include/libxml2"
57     CMAKE_OPTIONS+=" -DLIBXML2_LIBRARIES:STRING=${LIBXML2_ROOT_DIR}/lib/libxml2.so"
58     CMAKE_OPTIONS+=" -DLIBXML2_XMLLINT_EXECUTABLE=${LIBXML2_ROOT_DIR}/bin/xmllint"
59 fi
60
61 # HDF5
62 if [ -n "$HDF5_ROOT_DIR" ] && [ "$SAT_hdf5_IS_NATIVE" != "1" ]; then
63     CMAKE_OPTIONS+=" -DHDF5_DIR:PATH=${HDF5_ROOT_DIR}/share/cmake/hdf5"
64     CMAKE_OPTIONS+=" -DHDF5_USE_STATIC_LIBRARIES:BOOL=OFF"
65     CMAKE_OPTIONS+=" -DHDF5_ROOT:PATH=${HDF5_ROOT_DIR}"
66     CMAKE_OPTIONS+=" -DHDF5_hdf5_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib"
67     CMAKE_OPTIONS+=" -DHDF5_hdf5_hl_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib/libhdf5_hl.so"
68     CMAKE_OPTIONS+=" -DHDF5_HL_LIBRARY=${HDF5_ROOT_DIR}/lib/libhdf5_hl.so"
69     CMAKE_OPTIONS+=" -DHDF5_C_INCLUDE_DIR=${HDF5_ROOT_DIR}/include"
70 fi
71
72 # CMINPACK
73 if [ -n "$CMINPACK_ROOT_DIR" ] && [ "$SAT_cminpack_IS_NATIVE" != "1" ]; then
74     CMAKE_OPTIONS+=" -DCMINPACK_ROOT_DIR=${CMINPACK_ROOT_DIR}"
75     CMAKE_OPTIONS+=" -DCMINPACK_INCLUDE_DIR=${CMINPACK_ROOT_DIR}/include/cminpack-1"
76     CMAKE_OPTIONS+=" -DCMINPACK_LIBRARY=$CMINPACK_ROOT_DIR/lib/libcminpack_s.a"
77 else
78     CMAKE_OPTIONS+=" -DCMINPACK_ROOT_DIR=${CMINPACK_ROOT_DIR}"
79     CMAKE_OPTIONS+=" -DCMINPACK_INCLUDE_DIR=${CMINPACK_ROOT_DIR}/include/cminpack-1"
80 fi
81
82 # Blas/Lapack
83 if [ -n "$LAPACK_ROOT_DIR" ] && [ "$SAT_lapack_IS_NATIVE" != "1" ]; then
84     CMAKE_OPTIONS+=" -DLAPACK_DIR=${LAPACK_ROOT_DIR}/lib/cmake/lapack-3.8.0"
85     CMAKE_OPTIONS+=" -DCBLAS_DIR=${LAPACK_ROOT_DIR}/lib/cmake/cblas-3.8.0"
86     CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libcblas.so"
87     CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libblas.so"
88 fi
89
90 if [[ $DIST_NAME == "CO" && $DIST_VERSION == "8" &&  -f /usr/lib64/libcblas.so && -f /usr/lib64/libblas.so ]]; then
91     CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=/usr/lib64/libcblas.so"
92     CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=/usr/lib64/libblas.so"
93 fi
94
95 ### libxml2 settings
96 if [ -n "$LIBXML2_ROOT_DIR" ] && [ "$SAT_libxml2_IS_NATIVE" != "1" ]; then
97     CMAKE_OPTIONS+=" -DLIBXML2_INCLUDE_DIR:STRING=${LIBXML2_ROOT_DIR}/include/libxml2"
98     CMAKE_OPTIONS+=" -DLIBXML2_LIBRARIES:STRING=${LIBXML2_ROOT_DIR}/lib/libxml2.so"
99     CMAKE_OPTIONS+=" -DLIBXML2_XMLLINT_EXECUTABLE=${LIBXML2_ROOT_DIR}/bin/xmllint"
100 fi
101
102 ## nlopt
103 if [ -n "$NLOPT_ROOT_DIR" ] && [ "$SAT_nlopt_IS_NATIVE" != "1" ]; then
104     CMAKE_OPTIONS+=" -DNLOPT_INCLUDE_DIRS:STRING=${NLOPT_ROOT_DIR}/include"
105     CMAKE_OPTIONS+=" -DNLOPT_LIBRARIES:STRING=${NLOPT_ROOT_DIR}/lib"
106     CMAKE_OPTIONS+=" -DNLOPT_DIR:STRING=${NLOPT_ROOT_DIR}"
107 fi
108
109 echo
110 echo "*** cmake" $CMAKE_OPTIONS
111
112 mkdir -p $BUILD_DIR/openturns
113 mkdir -p  $BUILD_DIR/cache/pip
114 cd  $BUILD_DIR/openturns
115 cmake $CMAKE_OPTIONS $SOURCE_DIR/openturns-1.19
116 if [ $? -ne 0 ]
117 then
118     echo "ERROR on cmake"
119     exit 1
120 fi
121
122 echo
123 echo "*** make" $MAKE_OPTIONS
124 make $MAKE_OPTIONS
125 if [ $? -ne 0 ]
126 then
127     echo "ERROR on make"
128     exit 2
129 fi
130
131 echo
132 echo "*** make install"
133 make install
134 if [ $? -ne 0 ]
135 then
136     echo "ERROR on make install"
137     exit 3
138 fi
139
140 echo
141 echo "*** check installation"
142
143 if [ -d "${PRODUCT_INSTALL}/lib64" ]
144 then
145     mv ${PRODUCT_INSTALL}/lib64/* ${PRODUCT_INSTALL}/lib
146     rmdir ${PRODUCT_INSTALL}/lib64
147 fi
148
149 if [[ -d "${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/dist-packages" ]]; then
150     echo "WARNING: renaming ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/dist-packages as ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages"
151     cd  ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}
152     ls -l
153     mv dist-packages site-packages
154     ls -l
155     cd  $BUILD_DIR/openturns
156 fi
157
158 export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages:${PYTHONPATH}
159 export LD_LIBRARY_PATH=${PRODUCT_INSTALL}/lib:${LD_LIBRARY_PATH}
160 chmod +x ${SOURCE_DIR}/openturns-1.19/python/test/t_features.py
161 ${SOURCE_DIR}/openturns-1.19/python/test/t_features.py
162 if [ $? -ne 0 ]
163 then
164     echo "ERROR  testing Openturns features...."
165     exit 4
166 fi
167
168 LD_LIBRARY_PATH_REF=${LD_LIBRARY_PATH}
169 if [[ -d "$SOURCE_DIR/otfftw-0.12" ]]; then
170     declare -A OTC
171     OTC["otagrum"]="0.6"
172     OTC["otfftw"]="0.12"
173     OTC["otmixmod"]="0.13"
174     OTC["otmorris"]="0.13"
175     OTC["otpmml"]="1.12"
176     OTC["otrobopt"]="0.11"
177     OTC["otsubsetinverse"]="1.9"
178     OTC["otsvm"]="0.11"
179
180     for k in ${!OTC[@]};
181     do         
182         echo
183         echo "*** C O M P O N E N T : $k-${OTC[$k]} "
184         if [[ $k == "otagrum" ]]; then
185             echo "WARNING: skipping $k.."
186             continue
187         fi
188         cd  $BUILD_DIR
189         mkdir ${BUILD_DIR}/$k
190         cd ${BUILD_DIR}/$k 
191         CMAKE_EXTRA_OPTIONS=
192         if [[ $DIST_NAME == "CO" ]]; then
193             CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"  # needs extra latex modules on CentOS 7, 8
194             CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF"
195         fi
196         if [[ $k == "otmixmod" ]]; then
197             CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
198             CMAKE_EXTRA_OPTIONS+=" -DSOURCEFILES=$SOURCE_DIR/$k-${OTC[$k]}"
199         elif [[ $k == "otsubsetinverse" ]]; then
200             CMAKE_EXTRA_OPTIONS+=" -DOPENTURNS_HOME=$PRODUCT_INSTALL"
201             CMAKE_EXTRA_OPTIONS+=" -DCMAKE_SKIP_INSTALL_RPATH:BOOL=ON"
202             CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF"
203         elif  [[ $k == "otfftw" ]]; then
204             CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
205         elif [[ $k == "otmorris" ]]; then
206             case $LINUX_DISTRIBUTION in
207                 DB*|FD*)
208                     echo "WARNING: switching OFF documentation build"
209                     CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
210                     CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF" # missing package to be installed.
211                     ;;
212             esac
213         elif [[ $k == "otrobopt" ]]; then
214             case $LINUX_DISTRIBUTION in
215                 DB*|FD*)
216                     echo "WARNING: switching OFF documentation build"
217                     CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
218                     CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF" # missing package to be installed.
219                     ;;
220             esac
221         elif [[ $k == "otsvm" ]]; then
222             case $LINUX_DISTRIBUTION in
223                 DB*|FD*)
224                     echo "WARNING: switching OFF documentation build"
225                     CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
226                     CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF" # missing package to be installed.
227                     ;;
228             esac
229         elif  [[ $k == "otpmml" ]]; then
230             CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
231         fi
232
233         echo
234         echo "*** cmake " $CMAKE_OPTIONS ${CMAKE_EXTRA_OPTIONS}  $SOURCE_DIR/$k-${OTC[$k]}
235         cmake $CMAKE_OPTIONS ${CMAKE_EXTRA_OPTIONS} $SOURCE_DIR/$k-${OTC[$k]}
236         if [ $? -ne 0 ]
237         then
238             echo "ERROR on cmake"
239             exit 1
240         fi
241         
242         echo
243         echo "*** make" $MAKE_OPTIONS
244         make $MAKE_OPTIONS
245         if [ $? -ne 0 ]
246         then
247             echo "ERROR on make"
248             exit 2
249         fi
250         
251         echo
252         echo "*** make install"
253         make install
254         if [ $? -ne 0 ]
255         then
256             echo "ERROR on make install"
257             exit 3
258         fi
259     done
260
261     declare -A OTP
262     OTP["otfmi"]="0.15"
263     OTP["otpod"]="0.6.8"
264     OTP["otwrapy"]="0.11"
265     for k in ${!OTP[@]};
266     do 
267         echo
268         echo "*** C O M P O N E N T : $k-${OTP[$k]} "
269
270         if [ "$SAT_Python_IS_NATIVE" == "1" ]; then
271             if [ $k == "otfmi" ]; then
272                 echo "INFO: install dill-0.3.4"
273                 ${PYTHONBIN} -m pip install  --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/dill-0.3.4/dill-0.3.4-py2.py3-none-any.whl --no-deps  --prefix=$PRODUCT_INSTALL
274                 if [ $? -ne 0 ]
275                 then
276                     echo "FATAL: could not install dill-0.3.4"
277                     exit 6
278                 fi
279             elif [ $k == "otpod" ]; then
280                 if [[ $DIST_NAME == "CO" && $DIST_VERSION == "8" ]]; then
281                     echo "*** skipping: since system Cython too old"
282                     continue
283                 fi
284                 echo "INFO: install scikit-learn-0.24.2"
285                 ${PYTHONBIN} -m pip install  --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/scikit-learn-0.24.2/scikit-learn-0.24.2.tar.gz --no-deps  --prefix=$PRODUCT_INSTALL
286                 if [ $? -ne 0 ]
287                 then
288                     echo "FATAL: could not install scikit-0.24.2"
289                     exit 6
290                 fi
291                 echo "INFO: install threadpoolctl-3.0.0"
292                 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip  $SOURCE_DIR/threadpoolctl-3.0.0/threadpoolctl-3.0.0-py3-none-any.whl --no-deps --prefix=$PRODUCT_INSTALL
293                 if [ $? -ne 0 ]
294                 then
295                     echo "FATAL: could not install threadpoolctl 3.0.0"
296                     exit 6
297                 fi
298             fi
299         else # non native Python
300             if [[ $k == "otfmi" ]]; then
301                 echo "INFO: install dill-0.3.4"
302                 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/dill-0.3.4/dill-0.3.4-py2.py3-none-any.whl --no-deps
303                 if [ $? -ne 0 ]
304                 then
305                     echo "FATAL: could not install dikk-0.3.4"
306                     exit 5
307                 fi
308             elif [[ $k == "otpod" ]]; then
309                 echo "INFO: install threadpoolctl-3.0.0"
310                 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/threadpoolctl-3.0.0/threadpoolctl-3.0.0-py3-none-any.whl --no-deps
311                 if [ $? -ne 0 ]
312                 then
313                     echo "FATAL: could not install readpoolctl 3.0.0"
314                     exit 6
315                 fi
316                 echo "INFO: install joblib-1.1.0"
317                 ${PYTHONBIN} -m pip install  --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/joblib-1.1.0/joblib-1.1.0-py2.py3-none-any.whl --no-deps
318                 if [ $? -ne 0 ]
319                 then
320                     echo "FATAL: could not install joblib-1.1.0"
321                     exit 6
322                 fi
323                 echo "INFO: install decorator-5.1.0"
324                 ${PYTHONBIN} -m pip install  --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/decorator-5.1.0/decorator-5.1.0-py3-none-any.whl --no-deps
325                 if [ $? -ne 0 ]
326                 then
327                     echo "FATAL: could not install decorator-5.1.0"
328                     exit 6
329                 fi
330                 echo "INFO: install scikit-learn-0.24.2"
331                 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/scikit-learn-0.24.2/scikit-learn-0.24.2.tar.gz --no-deps
332                 if [ $? -ne 0 ]
333                 then
334                     echo "FATAL: could not install scikit-0.24.2"
335                     exit 6
336                 fi
337             fi
338         fi
339
340         cd  $BUILD_DIR
341         mkdir ${BUILD_DIR}/$k
342         cd ${BUILD_DIR}/$k
343         cp -R $SOURCE_DIR/$k-${OTP[$k]}/* .
344         #
345         $PYTHONBIN setup.py build
346         if [ $? -ne 0 ]
347         then
348             echo "ERROR on ${PYTHONBIN} setup.py  build"
349             exit 4
350         fi
351         #
352         $PYTHONBIN setup.py install --prefix=$PRODUCT_INSTALL
353         if [ $? -ne 0 ]
354         then
355             echo "ERROR on ${PYTHONBIN} setup.py  install --prefix=$PRODUCT_INSTALL"
356             exit 5
357         fi
358     done
359
360     #
361     # O P E N T U R N S
362     #
363     if [ -f ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py ]; then
364         echo "INFO: site.py already installed"
365     elif [ "$SAT_Python_IS_NATIVE" == "1" ]; then
366         # check first whether the init.py file is installed
367         echo "WARNING: missing init.py file. Installing it from system Python installation"
368         SITE_PATCH=
369         LINUX_DISTRIBUTION="$DIST_NAME$DIST_VERSION"
370         case $LINUX_DISTRIBUTION in
371             DB11)
372                 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
373                 ;;
374             DB10)
375                 SITE_PATCH=/usr/lib/python3/dist-packages/setuptools/site-patch.py
376                 ;;
377             UB22*)
378                 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
379                 ;;
380             UB20*)
381                 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
382                 ;;
383             FD32)
384                 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
385                 ;;
386             FD36)
387                 ###SITE_PATCH=
388                 SITE_PATCH=$SOURCE_DIR/addons/site-patch.py
389                 ;;
390             FD34)
391                 ###SITE_PATCH=
392                 SITE_PATCH=$SOURCE_DIR/addons/site-patch.py
393                 ;;
394             CO8*)
395                 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
396                 ;;
397             *)
398                 SITE_PATCH=$SOURCE_DIR/addons/site-patch.py
399                 ;;
400         esac
401         # check whether this file exists
402         if [ "${SITE_PATCH}" == "" ]; then
403             cp $SOURCE_DIR/addons/site-patch.py ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py
404         else
405             cp $SITE_PATCH ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py
406         fi
407     elif [ -f ${PYTHON_ROOT_DIR}/lib/python${PYTHON_VERSION}/site-packages/setuptools/site-patch.py ]; then
408         cp ${PYTHON_ROOT_DIR}/lib/python${PYTHON_VERSION}/site-packages/setuptools/site-patch.py ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py
409     else
410         echo "ERROR: could not find site-patch.py"
411         exit 7
412     fi
413 fi
414
415 cd ${PRODUCT_INSTALL}/lib
416 # On some nodes, the link to OT is not done properly.
417 # In addition to this issue, it seems that there is a bug in openturns 1.19  which uses 20 instead of 19 as suffix.
418 if [[ ! -f libOT.so.0 ]]; then
419     echo "INFO: Fixing libOT.so"
420     ln -sf libOT.so.0.20.0 libOT.so.0.20
421     ln -sf libOT.so.0.20 libOT.so.0
422     ln -sf libOT.so.0 libOT.so
423 fi
424
425 echo
426 echo "########## END"