products/compil_scripts/openturns-1.19.sh

   1 #!/bin/bash
   2
   3 echo "##########################################################################"
   4 echo "openturns" $VERSION
   5 echo "##########################################################################"
   6
   7 # we don't install in python directory -> modify environment as described in INSTALL file
   8
   9 mkdir -p $PRODUCT_INSTALL/lib/python${PYTHON_VERSION}/site-packages
  10 export PATH=$(pwd)/bin:$PATH
  11 export PYTHONPATH=$(pwd):$PYTHONPATH
  12 export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages:$PYTHONPATH
  13
  14 CMAKE_OPTIONS=""
  15 if [ -n "$SAT_HPC" ] && [ -n "$MPI_ROOT_DIR" ]; then
  16     echo "WARNING: setting CC and CXX environment variables and target MPI wrapper"
  17     CMAKE_OPTIONS+=" -DCMAKE_CXX_COMPILER:STRING=${MPI_CXX_COMPILER}"
  18     CMAKE_OPTIONS+=" -DCMAKE_C_COMPILER:STRING=${MPI_C_COMPILER}"
  19 fi
  20
  21 CMAKE_OPTIONS+=" -DCMAKE_INSTALL_PREFIX:STRING=${PRODUCT_INSTALL}"
  22 CMAKE_OPTIONS+=" -DCMAKE_INSTALL_LIBDIR:STRING=lib"
  23 CMAKE_OPTIONS+=" -DCMAKE_BUILD_TYPE:STRING=Release"
  24 CMAKE_OPTIONS+=" -DPYTHON_EXECUTABLE=${PYTHONBIN}"
  25
  26 if [ -n "$SWIG_ROOT_DIR" ] && [ "$SAT_swig_IS_NATIVE" != "1" ]; then
  27     CMAKE_OPTIONS+=" -DSWIG_EXECUTABLE=${SWIG_ROOT_DIR}/bin/swig"
  28 fi
  29
  30 if [ -n "$TBB_ROOT_DIR" ] && [ "$SAT_tbb_IS_NATIVE" != "1" ]; then
  31     CMAKE_OPTIONS+=" -DTBB_ROOT_DIR=${TBB_ROOT_DIR}"
  32     CMAKE_OPTIONS+=" -Dtbb_DIR=${TBB_ROOT_DIR}/lib/cmake"
  33 fi
  34
  35 # https://github.com/persalys/persalys/issues/745
  36 LINUX_DISTRIBUTION="$DIST_NAME$DIST_VERSION"
  37 case $LINUX_DISTRIBUTION in
  38     UB22*|CO8*|CO9*|FD36)
  39         echo "WARNING: switching OFF TBB support"
  40         CMAKE_OPTIONS+=" -DUSE_TBB=OFF"
  41         ;;
  42     *)
  43         ;;
  44 esac
  45
  46 # Blas/Lapack
  47 if [ -n "$LAPACK_ROOT_DIR" ] && [ "$SAT_lapack_IS_NATIVE" != "1" ]; then
  48     CMAKE_OPTIONS+=" -DLAPACK_DIR=${LAPACK_ROOT_DIR}/lib/cmake/lapack-3.8.0"
  49     CMAKE_OPTIONS+=" -DCBLAS_DIR=${LAPACK_ROOT_DIR}/lib/cmake/cblas-3.8.0"
  50     CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libcblas.so"
  51     CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libblas.so"
  52 fi
  53
  54 ### libxml2 settings
  55 if [ -n "$LIBXML2_ROOT_DIR" ] && [ "$SAT_libxml2_IS_NATIVE" != "1" ]; then
  56     CMAKE_OPTIONS+=" -DLIBXML2_INCLUDE_DIR:STRING=${LIBXML2_ROOT_DIR}/include/libxml2"
  57     CMAKE_OPTIONS+=" -DLIBXML2_LIBRARIES:STRING=${LIBXML2_ROOT_DIR}/lib/libxml2.so"
  58     CMAKE_OPTIONS+=" -DLIBXML2_XMLLINT_EXECUTABLE=${LIBXML2_ROOT_DIR}/bin/xmllint"
  59 fi
  60
  61 # HDF5
  62 if [ -n "$HDF5_ROOT_DIR" ] && [ "$SAT_hdf5_IS_NATIVE" != "1" ]; then
  63     CMAKE_OPTIONS+=" -DHDF5_DIR:PATH=${HDF5_ROOT_DIR}/share/cmake/hdf5"
  64     CMAKE_OPTIONS+=" -DHDF5_USE_STATIC_LIBRARIES:BOOL=OFF"
  65     CMAKE_OPTIONS+=" -DHDF5_ROOT:PATH=${HDF5_ROOT_DIR}"
  66     CMAKE_OPTIONS+=" -DHDF5_hdf5_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib"
  67     CMAKE_OPTIONS+=" -DHDF5_hdf5_hl_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib/libhdf5_hl.so"
  68     CMAKE_OPTIONS+=" -DHDF5_HL_LIBRARY=${HDF5_ROOT_DIR}/lib/libhdf5_hl.so"
  69     CMAKE_OPTIONS+=" -DHDF5_C_INCLUDE_DIR=${HDF5_ROOT_DIR}/include"
  70 fi
  71
  72 # CMINPACK
  73 if [ -n "$CMINPACK_ROOT_DIR" ] && [ "$SAT_cminpack_IS_NATIVE" != "1" ]; then
  74     CMAKE_OPTIONS+=" -DCMINPACK_ROOT_DIR=${CMINPACK_ROOT_DIR}"
  75     CMAKE_OPTIONS+=" -DCMINPACK_INCLUDE_DIR=${CMINPACK_ROOT_DIR}/include/cminpack-1"
  76     CMAKE_OPTIONS+=" -DCMINPACK_LIBRARY=$CMINPACK_ROOT_DIR/lib/libcminpack_s.a"
  77 else
  78     CMAKE_OPTIONS+=" -DCMINPACK_ROOT_DIR=${CMINPACK_ROOT_DIR}"
  79     CMAKE_OPTIONS+=" -DCMINPACK_INCLUDE_DIR=${CMINPACK_ROOT_DIR}/include/cminpack-1"
  80 fi
  81
  82 # Blas/Lapack
  83 if [ -n "$LAPACK_ROOT_DIR" ] && [ "$SAT_lapack_IS_NATIVE" != "1" ]; then
  84     CMAKE_OPTIONS+=" -DLAPACK_DIR=${LAPACK_ROOT_DIR}/lib/cmake/lapack-3.8.0"
  85     CMAKE_OPTIONS+=" -DCBLAS_DIR=${LAPACK_ROOT_DIR}/lib/cmake/cblas-3.8.0"
  86     CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libcblas.so"
  87     CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libblas.so"
  88 fi
  89
  90 if [[ $DIST_NAME == "CO" && $DIST_VERSION == "8" &&  -f /usr/lib64/libcblas.so && -f /usr/lib64/libblas.so ]]; then
  91     CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=/usr/lib64/libcblas.so"
  92     CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=/usr/lib64/libblas.so"
  93 fi
  94
  95 ### libxml2 settings
  96 if [ -n "$LIBXML2_ROOT_DIR" ] && [ "$SAT_libxml2_IS_NATIVE" != "1" ]; then
  97     CMAKE_OPTIONS+=" -DLIBXML2_INCLUDE_DIR:STRING=${LIBXML2_ROOT_DIR}/include/libxml2"
  98     CMAKE_OPTIONS+=" -DLIBXML2_LIBRARIES:STRING=${LIBXML2_ROOT_DIR}/lib/libxml2.so"
  99     CMAKE_OPTIONS+=" -DLIBXML2_XMLLINT_EXECUTABLE=${LIBXML2_ROOT_DIR}/bin/xmllint"
 100 fi
 101
 102 ## nlopt
 103 if [ -n "$NLOPT_ROOT_DIR" ] && [ "$SAT_nlopt_IS_NATIVE" != "1" ]; then
 104     CMAKE_OPTIONS+=" -DNLOPT_INCLUDE_DIRS:STRING=${NLOPT_ROOT_DIR}/include"
 105     CMAKE_OPTIONS+=" -DNLOPT_LIBRARIES:STRING=${NLOPT_ROOT_DIR}/lib"
 106     CMAKE_OPTIONS+=" -DNLOPT_DIR:STRING=${NLOPT_ROOT_DIR}"
 107 fi
 108
 109
 110
 111 echo
 112 echo "*** cmake" $CMAKE_OPTIONS
 113
 114 mkdir -p $BUILD_DIR/openturns
 115 mkdir -p  $BUILD_DIR/cache/pip
 116 cd  $BUILD_DIR/openturns
 117 cmake $CMAKE_OPTIONS $SOURCE_DIR/openturns-1.19
 118 if [ $? -ne 0 ]
 119 then
 120     echo "ERROR on cmake"
 121     exit 1
 122 fi
 123
 124 echo
 125 echo "*** make" $MAKE_OPTIONS
 126 make $MAKE_OPTIONS
 127 if [ $? -ne 0 ]
 128 then
 129     echo "ERROR on make"
 130     exit 2
 131 fi
 132
 133 echo
 134 echo "*** make install"
 135 make install
 136 if [ $? -ne 0 ]
 137 then
 138     echo "ERROR on make install"
 139     exit 3
 140 fi
 141
 142 echo
 143 echo "*** check installation"
 144
 145 if [ -d "${PRODUCT_INSTALL}/lib64" ]
 146 then
 147     mv ${PRODUCT_INSTALL}/lib64/* ${PRODUCT_INSTALL}/lib
 148     rmdir ${PRODUCT_INSTALL}/lib64
 149 fi
 150
 151 export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages:${PYTHONPATH}
 152 export LD_LIBRARY_PATH=${PRODUCT_INSTALL}/lib:${LD_LIBRARY_PATH}
 153 chmod +x ${SOURCE_DIR}/openturns-1.19/python/test/t_features.py
 154 ${SOURCE_DIR}/openturns-1.19/python/test/t_features.py
 155 if [ $? -ne 0 ]
 156 then
 157     echo "ERROR  testing Openturns features...."
 158     exit 4
 159 fi
 160
 161 LD_LIBRARY_PATH_REF=${LD_LIBRARY_PATH}
 162 if [[ -d "$SOURCE_DIR/otfftw-0.12" ]]; then
 163
 164     declare -A OTC
 165     OTC["otagrum"]="0.6"
 166     OTC["otfftw"]="0.12"
 167     OTC["otmixmod"]="0.13"
 168     OTC["otmorris"]="0.13"
 169     OTC["otpmml"]="1.12"
 170     OTC["otrobopt"]="0.11"
 171     OTC["otsubsetinverse"]="1.9"
 172     OTC["otsvm"]="0.11"
 173
 174     for k in ${!OTC[@]};
 175     do
 176         echo
 177         echo "*** C O M P O N E N T : $k-${OTC[$k]} "
 178         if [[ $k == "otagrum" ]]; then
 179             echo "WARNING: skipping $k.."
 180             continue
 181         fi
 182         cd  $BUILD_DIR
 183         mkdir ${BUILD_DIR}/$k
 184         cd ${BUILD_DIR}/$k
 185         CMAKE_EXTRA_OPTIONS=
 186         if [[ $DIST_NAME == "CO" ]]; then
 187             CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"  # needs extra latex modules on CentOS 7, 8
 188             CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF"
 189         fi
 190         if [[ $k == "otmixmod" ]]; then
 191             CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
 192             CMAKE_EXTRA_OPTIONS+=" -DSOURCEFILES=$SOURCE_DIR/$k-${OTC[$k]}"
 193         elif [[ $k == "otsubsetinverse" ]]; then
 194             CMAKE_EXTRA_OPTIONS+=" -DOPENTURNS_HOME=$PRODUCT_INSTALL"
 195             CMAKE_EXTRA_OPTIONS+=" -DCMAKE_SKIP_INSTALL_RPATH:BOOL=ON"
 196             CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF"
 197         elif  [[ $k == "otfftw" ]]; then
 198             CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
 199         elif [[ $k == "otmorris" ]]; then
 200             case $LINUX_DISTRIBUTION in
 201                 DB*|FD*)
 202                     echo "WARNING: switching OFF documentation build"
 203                     CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
 204                     CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF" # missing package to be installed.
 205                     ;;
 206             esac
 207         elif [[ $k == "otrobopt" ]]; then
 208             case $LINUX_DISTRIBUTION in
 209                 DB*|FD*)
 210                     echo "WARNING: switching OFF documentation build"
 211                     CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
 212                     CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF" # missing package to be installed.
 213                     ;;
 214             esac
 215         elif [[ $k == "otsvm" ]]; then
 216             case $LINUX_DISTRIBUTION in
 217                 DB*|FD*)
 218                     echo "WARNING: switching OFF documentation build"
 219                     CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
 220                     CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF" # missing package to be installed.
 221                     ;;
 222             esac
 223         elif  [[ $k == "otpmml" ]]; then
 224             CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
 225         fi
 226
 227         echo
 228         echo "*** cmake " $CMAKE_OPTIONS ${CMAKE_EXTRA_OPTIONS}  $SOURCE_DIR/$k-${OTC[$k]}
 229         cmake $CMAKE_OPTIONS ${CMAKE_EXTRA_OPTIONS} $SOURCE_DIR/$k-${OTC[$k]}
 230         if [ $? -ne 0 ]
 231         then
 232             echo "ERROR on cmake"
 233             exit 1
 234         fi
 235
 236         echo
 237         echo "*** make" $MAKE_OPTIONS
 238         make $MAKE_OPTIONS
 239         if [ $? -ne 0 ]
 240         then
 241             echo "ERROR on make"
 242             exit 2
 243         fi
 244
 245         echo
 246         echo "*** make install"
 247         make install
 248         if [ $? -ne 0 ]
 249         then
 250             echo "ERROR on make install"
 251             exit 3
 252         fi
 253     done
 254     declare -A OTP
 255     OTP["otfmi"]="0.15"
 256     OTP["otpod"]="0.6.8"
 257     OTP["otwrapy"]="0.11"
 258     for k in ${!OTP[@]};
 259     do
 260         echo
 261         echo "*** C O M P O N E N T : $k-${OTP[$k]} "
 262
 263         if [ "$SAT_Python_IS_NATIVE" == "1" ]; then
 264             if [ $k == "otfmi" ]; then
 265                 echo "INFO: install dill-0.3.4"
 266                 ${PYTHONBIN} -m pip install  --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/dill-0.3.4/dill-0.3.4-py2.py3-none-any.whl --no-deps  --prefix=$PRODUCT_INSTALL
 267                 if [ $? -ne 0 ]
 268                 then
 269                     echo "FATAL: could not install dill-0.3.4"
 270                     exit 6
 271                 fi
 272             elif [ $k == "otpod" ]; then
 273                 if [[ $DIST_NAME == "CO" && $DIST_VERSION == "8" ]]; then
 274                     echo "*** skipping: since system Cython too old"
 275                     continue
 276                 fi
 277                 echo "INFO: install scikit-learn-0.24.2"
 278                 ${PYTHONBIN} -m pip install  --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/scikit-learn-0.24.2/scikit-learn-0.24.2.tar.gz --no-deps  --prefix=$PRODUCT_INSTALL
 279                 if [ $? -ne 0 ]
 280                 then
 281                     echo "FATAL: could not install scikit-0.24.2"
 282                     exit 6
 283                 fi
 284                 echo "INFO: install threadpoolctl-3.0.0"
 285                 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip  $SOURCE_DIR/threadpoolctl-3.0.0/threadpoolctl-3.0.0-py3-none-any.whl --no-deps --prefix=$PRODUCT_INSTALL
 286                 if [ $? -ne 0 ]
 287                 then
 288                     echo "FATAL: could not install threadpoolctl 3.0.0"
 289                     exit 6
 290                 fi
 291             fi
 292         else # non native Python
 293             if [[ $k == "otfmi" ]]; then
 294                 echo "INFO: install dill-0.3.4"
 295                 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/dill-0.3.4/dill-0.3.4-py2.py3-none-any.whl --no-deps
 296                 if [ $? -ne 0 ]
 297                 then
 298                     echo "FATAL: could not install dikk-0.3.4"
 299                     exit 5
 300                 fi
 301             elif [[ $k == "otpod" ]]; then
 302                 echo "INFO: install threadpoolctl-3.0.0"
 303                 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/threadpoolctl-3.0.0/threadpoolctl-3.0.0-py3-none-any.whl --no-deps
 304                 if [ $? -ne 0 ]
 305                 then
 306                     echo "FATAL: could not install readpoolctl 3.0.0"
 307                     exit 6
 308                 fi
 309                 echo "INFO: install joblib-1.1.0"
 310                 ${PYTHONBIN} -m pip install  --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/joblib-1.1.0/joblib-1.1.0-py2.py3-none-any.whl --no-deps
 311                 if [ $? -ne 0 ]
 312                 then
 313                     echo "FATAL: could not install joblib-1.1.0"
 314                     exit 6
 315                 fi
 316                 echo "INFO: install decorator-5.1.0"
 317                 ${PYTHONBIN} -m pip install  --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/decorator-5.1.0/decorator-5.1.0-py3-none-any.whl --no-deps
 318                 if [ $? -ne 0 ]
 319                 then
 320                     echo "FATAL: could not install decorator-5.1.0"
 321                     exit 6
 322                 fi
 323                 echo "INFO: install scikit-learn-0.24.2"
 324                 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/scikit-learn-0.24.2/scikit-learn-0.24.2.tar.gz --no-deps
 325                 if [ $? -ne 0 ]
 326                 then
 327                     echo "FATAL: could not install scikit-0.24.2"
 328                     exit 6
 329                 fi
 330             fi
 331         fi
 332
 333         cd  $BUILD_DIR
 334         mkdir ${BUILD_DIR}/$k
 335         cd ${BUILD_DIR}/$k
 336         cp -R $SOURCE_DIR/$k-${OTP[$k]}/* .
 337         #
 338         $PYTHONBIN setup.py build
 339         if [ $? -ne 0 ]
 340         then
 341             echo "ERROR on ${PYTHONBIN} setup.py  build"
 342             exit 4
 343         fi
 344         #
 345         $PYTHONBIN setup.py install --prefix=$PRODUCT_INSTALL
 346         if [ $? -ne 0 ]
 347         then
 348             echo "ERROR on ${PYTHONBIN} setup.py  install --prefix=$PRODUCT_INSTALL"
 349             exit 5
 350         fi
 351     done
 352
 353     #
 354     # O P E N T U R N S
 355     #
 356     if [ -f ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py ]; then
 357         echo "INFO: site.py already installed"
 358     elif [ "$SAT_Python_IS_NATIVE" == "1" ]; then
 359         # check first whether the init.py file is installed
 360         echo "WARNING: missing init.py file. Installing it from system Python installation"
 361         SITE_PATCH=
 362         LINUX_DISTRIBUTION="$DIST_NAME$DIST_VERSION"
 363         case $LINUX_DISTRIBUTION in
 364             DB11)
 365                 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
 366                 ;;
 367             DB10)
 368                 SITE_PATCH=/usr/lib/python3/dist-packages/setuptools/site-patch.py
 369                 ;;
 370             UB22*)
 371                 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
 372                 ;;
 373             UB20*)
 374                 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
 375                 ;;
 376             FD32)
 377                 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
 378                 ;;
 379             FD36)
 380                 ###SITE_PATCH=
 381                 SITE_PATCH=$SOURCE_DIR/addons/site-patch.py
 382                 ;;
 383             FD34)
 384                 ###SITE_PATCH=
 385                 SITE_PATCH=$SOURCE_DIR/addons/site-patch.py
 386                 ;;
 387             CO8*)
 388                 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
 389                 ;;
 390             *)
 391                 SITE_PATCH=$SOURCE_DIR/addons/site-patch.py
 392                 ;;
 393         esac
 394         # check whether this file exists
 395         if [ "${SITE_PATCH}" == "" ]; then
 396             cp $SOURCE_DIR/addons/site-patch.py ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py
 397         else
 398             cp $SITE_PATCH ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py
 399         fi
 400     elif [ -f ${PYTHON_ROOT_DIR}/lib/python${PYTHON_VERSION}/site-packages/setuptools/site-patch.py ]; then
 401         cp ${PYTHON_ROOT_DIR}/lib/python${PYTHON_VERSION}/site-packages/setuptools/site-patch.py ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py
 402     else
 403         echo "ERROR: could not find site-patch.py"
 404         exit 7
 405     fi
 406 fi
 407
 408 cd ${PRODUCT_INSTALL}/lib
 409 # On some nodes, the link to OT is not done properly.
 410 if [[ ! -f libOT.so.0 ]]; then
 411     echo "INFO: Fixing libOT.so"
 412     ln -sf libOT.so.0.19.0 libOT.so.0.19
 413     ln -sf libOT.so.0.19 libOT.so.0
 414     ln -sf libOT.so.0 libOT.so
 415 fi
 416
 417 echo
 418 echo "########## END"