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[tools/sat_salome.git] / products / compil_scripts / openturns-1.19.sh
1 #!/bin/bash                                                                                                                                                                              
2
3 echo "##########################################################################"
4 echo "openturns" $VERSION
5 echo "##########################################################################"
6
7 # we don't install in python directory -> modify environment as described in INSTALL file
8
9 mkdir -p $PRODUCT_INSTALL/lib/python${PYTHON_VERSION}/site-packages
10 export PATH=$(pwd)/bin:$PATH
11 export PYTHONPATH=$(pwd):$PYTHONPATH
12 export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages:$PYTHONPATH
13
14 CMAKE_OPTIONS=""
15 if [ -n "$SAT_HPC" ] && [ -n "$MPI_ROOT_DIR" ]; then
16     echo "WARNING: setting CC and CXX environment variables and target MPI wrapper"
17     CMAKE_OPTIONS+=" -DCMAKE_CXX_COMPILER:STRING=${MPI_CXX_COMPILER}"
18     CMAKE_OPTIONS+=" -DCMAKE_C_COMPILER:STRING=${MPI_C_COMPILER}"
19 fi
20
21 CMAKE_OPTIONS+=" -DCMAKE_INSTALL_PREFIX:STRING=${PRODUCT_INSTALL}"
22 CMAKE_OPTIONS+=" -DCMAKE_INSTALL_LIBDIR:STRING=lib"
23 CMAKE_OPTIONS+=" -DCMAKE_BUILD_TYPE:STRING=Release"
24 CMAKE_OPTIONS+=" -DPYTHON_EXECUTABLE=${PYTHONBIN}"
25
26 if [ -n "$SWIG_ROOT_DIR" ] && [ "$SAT_swig_IS_NATIVE" != "1" ]; then
27     CMAKE_OPTIONS+=" -DSWIG_EXECUTABLE=${SWIG_ROOT_DIR}/bin/swig"
28 fi
29
30 if [ -n "$TBB_ROOT_DIR" ] && [ "$SAT_tbb_IS_NATIVE" != "1" ]; then
31     CMAKE_OPTIONS+=" -DTBB_ROOT_DIR=${TBB_ROOT_DIR}"
32     CMAKE_OPTIONS+=" -Dtbb_DIR=${TBB_ROOT_DIR}/lib/cmake"
33 fi
34
35 # https://github.com/persalys/persalys/issues/745
36 LINUX_DISTRIBUTION="$DIST_NAME$DIST_VERSION"
37 case $LINUX_DISTRIBUTION in
38     UB22*|CO8*|CO9*|FD36)
39         echo "WARNING: switching OFF TBB support"
40         CMAKE_OPTIONS+=" -DUSE_TBB=OFF"
41         ;;
42     *)
43         ;;
44 esac
45
46 # Blas/Lapack
47 if [ -n "$LAPACK_ROOT_DIR" ] && [ "$SAT_lapack_IS_NATIVE" != "1" ]; then
48     CMAKE_OPTIONS+=" -DLAPACK_DIR=${LAPACK_ROOT_DIR}/lib/cmake/lapack-3.8.0"
49     CMAKE_OPTIONS+=" -DCBLAS_DIR=${LAPACK_ROOT_DIR}/lib/cmake/cblas-3.8.0"
50     CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libcblas.so"
51     CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libblas.so"
52 fi
53
54 ### libxml2 settings
55 if [ -n "$LIBXML2_ROOT_DIR" ] && [ "$SAT_libxml2_IS_NATIVE" != "1" ]; then
56     CMAKE_OPTIONS+=" -DLIBXML2_INCLUDE_DIR:STRING=${LIBXML2_ROOT_DIR}/include/libxml2"
57     CMAKE_OPTIONS+=" -DLIBXML2_LIBRARIES:STRING=${LIBXML2_ROOT_DIR}/lib/libxml2.so"
58     CMAKE_OPTIONS+=" -DLIBXML2_XMLLINT_EXECUTABLE=${LIBXML2_ROOT_DIR}/bin/xmllint"
59 fi
60
61 # HDF5
62 if [ -n "$HDF5_ROOT_DIR" ] && [ "$SAT_hdf5_IS_NATIVE" != "1" ]; then
63     CMAKE_OPTIONS+=" -DHDF5_DIR:PATH=${HDF5_ROOT_DIR}/share/cmake/hdf5"
64     CMAKE_OPTIONS+=" -DHDF5_USE_STATIC_LIBRARIES:BOOL=OFF"
65     CMAKE_OPTIONS+=" -DHDF5_ROOT:PATH=${HDF5_ROOT_DIR}"
66     CMAKE_OPTIONS+=" -DHDF5_hdf5_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib"
67     CMAKE_OPTIONS+=" -DHDF5_hdf5_hl_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib/libhdf5_hl.so"
68     CMAKE_OPTIONS+=" -DHDF5_HL_LIBRARY=${HDF5_ROOT_DIR}/lib/libhdf5_hl.so"
69     CMAKE_OPTIONS+=" -DHDF5_C_INCLUDE_DIR=${HDF5_ROOT_DIR}/include"
70 fi
71
72 # CMINPACK
73 if [ -n "$CMINPACK_ROOT_DIR" ] && [ "$SAT_cminpack_IS_NATIVE" != "1" ]; then
74     CMAKE_OPTIONS+=" -DCMINPACK_ROOT_DIR=${CMINPACK_ROOT_DIR}"
75     CMAKE_OPTIONS+=" -DCMINPACK_INCLUDE_DIR=${CMINPACK_ROOT_DIR}/include/cminpack-1"
76     CMAKE_OPTIONS+=" -DCMINPACK_LIBRARY=$CMINPACK_ROOT_DIR/lib/libcminpack_s.a"
77 else
78     CMAKE_OPTIONS+=" -DCMINPACK_ROOT_DIR=${CMINPACK_ROOT_DIR}"
79     CMAKE_OPTIONS+=" -DCMINPACK_INCLUDE_DIR=${CMINPACK_ROOT_DIR}/include/cminpack-1"
80 fi
81
82 # Blas/Lapack
83 if [ -n "$LAPACK_ROOT_DIR" ] && [ "$SAT_lapack_IS_NATIVE" != "1" ]; then
84     CMAKE_OPTIONS+=" -DLAPACK_DIR=${LAPACK_ROOT_DIR}/lib/cmake/lapack-3.8.0"
85     CMAKE_OPTIONS+=" -DCBLAS_DIR=${LAPACK_ROOT_DIR}/lib/cmake/cblas-3.8.0"
86     CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libcblas.so"
87     CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libblas.so"
88 fi
89
90 if [[ $DIST_NAME == "CO" && $DIST_VERSION == "8" &&  -f /usr/lib64/libcblas.so && -f /usr/lib64/libblas.so ]]; then
91     CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=/usr/lib64/libcblas.so"
92     CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=/usr/lib64/libblas.so"
93 fi
94
95 ### libxml2 settings
96 if [ -n "$LIBXML2_ROOT_DIR" ] && [ "$SAT_libxml2_IS_NATIVE" != "1" ]; then
97     CMAKE_OPTIONS+=" -DLIBXML2_INCLUDE_DIR:STRING=${LIBXML2_ROOT_DIR}/include/libxml2"
98     CMAKE_OPTIONS+=" -DLIBXML2_LIBRARIES:STRING=${LIBXML2_ROOT_DIR}/lib/libxml2.so"
99     CMAKE_OPTIONS+=" -DLIBXML2_XMLLINT_EXECUTABLE=${LIBXML2_ROOT_DIR}/bin/xmllint"
100 fi
101
102 ## nlopt
103 if [ -n "$NLOPT_ROOT_DIR" ] && [ "$SAT_nlopt_IS_NATIVE" != "1" ]; then
104     CMAKE_OPTIONS+=" -DNLOPT_INCLUDE_DIRS:STRING=${NLOPT_ROOT_DIR}/include"
105     CMAKE_OPTIONS+=" -DNLOPT_LIBRARIES:STRING=${NLOPT_ROOT_DIR}/lib"
106     CMAKE_OPTIONS+=" -DNLOPT_DIR:STRING=${NLOPT_ROOT_DIR}"
107 fi
108
109 echo
110 echo "*** cmake" $CMAKE_OPTIONS
111
112 rm -rf $BUILD_DIR
113 mkdir -p $BUILD_DIR/openturns
114 mkdir -p  $BUILD_DIR/cache/pip
115 cd  $BUILD_DIR/openturns
116 cmake $CMAKE_OPTIONS $SOURCE_DIR/openturns-1.19
117 if [ $? -ne 0 ]
118 then
119     echo "ERROR on cmake"
120     exit 1
121 fi
122
123 echo
124 echo "*** make" $MAKE_OPTIONS
125 make $MAKE_OPTIONS
126 if [ $? -ne 0 ]
127 then
128     echo "ERROR on make"
129     exit 2
130 fi
131
132 echo
133 echo "*** make install"
134 make install
135 if [ $? -ne 0 ]
136 then
137     echo "ERROR on make install"
138     exit 3
139 fi
140
141 echo
142 echo "*** check installation"
143
144 if [ -d "${PRODUCT_INSTALL}/lib64" ]
145 then
146     mv ${PRODUCT_INSTALL}/lib64/* ${PRODUCT_INSTALL}/lib
147     rmdir ${PRODUCT_INSTALL}/lib64
148 fi
149
150 if [[ -d "${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/dist-packages" ]]; then
151     echo "WARNING: renaming ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/dist-packages as ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages"
152     cd  ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}
153     ls -l
154     mv dist-packages site-packages
155     ls -l
156     cd  $BUILD_DIR/openturns
157 fi
158
159 export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages:${PYTHONPATH}
160 export LD_LIBRARY_PATH=${PRODUCT_INSTALL}/lib:${LD_LIBRARY_PATH}
161 chmod +x ${SOURCE_DIR}/openturns-1.19/python/test/t_features.py
162 ${SOURCE_DIR}/openturns-1.19/python/test/t_features.py
163 if [ $? -ne 0 ]
164 then
165     echo "ERROR  testing Openturns features...."
166     exit 4
167 fi
168
169 LD_LIBRARY_PATH_REF=${LD_LIBRARY_PATH}
170 if [[ -d "$SOURCE_DIR/otfftw-0.12" ]]; then
171     declare -A OTC
172     OTC["otagrum"]="0.6"
173     OTC["otfftw"]="0.12"
174     OTC["otmixmod"]="0.13"
175     OTC["otmorris"]="0.13"
176     OTC["otpmml"]="1.12"
177     OTC["otrobopt"]="0.11"
178     OTC["otsubsetinverse"]="1.9"
179     OTC["otsvm"]="0.11"
180
181     for k in ${!OTC[@]};
182     do         
183         echo
184         echo "*** C O M P O N E N T : $k-${OTC[$k]} "
185         if [[ $k == "otagrum" ]]; then
186             echo "WARNING: skipping $k.."
187             continue
188         fi
189         cd  $BUILD_DIR
190         mkdir ${BUILD_DIR}/$k
191         cd ${BUILD_DIR}/$k 
192         CMAKE_EXTRA_OPTIONS=
193         if [[ $DIST_NAME == "CO" ]]; then
194             CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"  # needs extra latex modules on CentOS 7, 8
195             CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF"
196         fi
197         if [[ $k == "otmixmod" ]]; then
198             CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
199             CMAKE_EXTRA_OPTIONS+=" -DSOURCEFILES=$SOURCE_DIR/$k-${OTC[$k]}"
200         elif [[ $k == "otsubsetinverse" ]]; then
201             CMAKE_EXTRA_OPTIONS+=" -DOPENTURNS_HOME=$PRODUCT_INSTALL"
202             CMAKE_EXTRA_OPTIONS+=" -DCMAKE_SKIP_INSTALL_RPATH:BOOL=ON"
203             CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF"
204         elif  [[ $k == "otfftw" ]]; then
205             CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
206         elif [[ $k == "otmorris" ]]; then
207             case $LINUX_DISTRIBUTION in
208                 DB*|FD*)
209                     echo "WARNING: switching OFF documentation build"
210                     CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
211                     CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF" # missing package to be installed.
212                     ;;
213             esac
214         elif [[ $k == "otrobopt" ]]; then
215             case $LINUX_DISTRIBUTION in
216                 DB*|FD*)
217                     echo "WARNING: switching OFF documentation build"
218                     CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
219                     CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF" # missing package to be installed.
220                     ;;
221             esac
222         elif [[ $k == "otsvm" ]]; then
223             case $LINUX_DISTRIBUTION in
224                 DB*|FD*)
225                     echo "WARNING: switching OFF documentation build"
226                     CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
227                     CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF" # missing package to be installed.
228                     ;;
229             esac
230         elif  [[ $k == "otpmml" ]]; then
231             CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
232         fi
233
234         echo
235         echo "*** cmake " $CMAKE_OPTIONS ${CMAKE_EXTRA_OPTIONS}  $SOURCE_DIR/$k-${OTC[$k]}
236         cmake $CMAKE_OPTIONS ${CMAKE_EXTRA_OPTIONS} $SOURCE_DIR/$k-${OTC[$k]}
237         if [ $? -ne 0 ]
238         then
239             echo "ERROR on cmake"
240             exit 1
241         fi
242         
243         echo
244         echo "*** make" $MAKE_OPTIONS
245         make $MAKE_OPTIONS
246         if [ $? -ne 0 ]
247         then
248             echo "ERROR on make"
249             exit 2
250         fi
251         
252         echo
253         echo "*** make install"
254         make install
255         if [ $? -ne 0 ]
256         then
257             echo "ERROR on make install"
258             exit 3
259         fi
260     done
261
262     declare -A OTP
263     OTP["otfmi"]="0.15"
264     OTP["otpod"]="0.6.8"
265     OTP["otwrapy"]="0.11"
266     for k in ${!OTP[@]};
267     do 
268         echo
269         echo "*** C O M P O N E N T : $k-${OTP[$k]} "
270
271         if [ "$SAT_Python_IS_NATIVE" == "1" ]; then
272             if [ $k == "otfmi" ]; then
273                 echo "INFO: install dill-0.3.4"
274                 ${PYTHONBIN} -m pip install  --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/dill-0.3.4/dill-0.3.4-py2.py3-none-any.whl --no-deps  --prefix=$PRODUCT_INSTALL
275                 if [ $? -ne 0 ]
276                 then
277                     echo "FATAL: could not install dill-0.3.4"
278                     exit 6
279                 fi
280             elif [ $k == "otpod" ]; then
281                 if [[ $DIST_NAME == "CO" && $DIST_VERSION == "8" ]]; then
282                     echo "*** skipping: since system Cython too old"
283                     continue
284                 fi
285                 echo "INFO: install scikit-learn-0.24.2"
286                 ${PYTHONBIN} -m pip install  --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/scikit-learn-0.24.2/scikit-learn-0.24.2.tar.gz --no-deps  --prefix=$PRODUCT_INSTALL
287                 if [ $? -ne 0 ]
288                 then
289                     echo "FATAL: could not install scikit-0.24.2"
290                     exit 6
291                 fi
292                 echo "INFO: install threadpoolctl-3.0.0"
293                 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip  $SOURCE_DIR/threadpoolctl-3.0.0/threadpoolctl-3.0.0-py3-none-any.whl --no-deps --prefix=$PRODUCT_INSTALL
294                 if [ $? -ne 0 ]
295                 then
296                     echo "FATAL: could not install threadpoolctl 3.0.0"
297                     exit 6
298                 fi
299             fi
300         else # non native Python
301             if [[ $k == "otfmi" ]]; then
302                 echo "INFO: install dill-0.3.4"
303                 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/dill-0.3.4/dill-0.3.4-py2.py3-none-any.whl --no-deps
304                 if [ $? -ne 0 ]
305                 then
306                     echo "FATAL: could not install dikk-0.3.4"
307                     exit 5
308                 fi
309             elif [[ $k == "otpod" ]]; then
310                 echo "INFO: install threadpoolctl-3.0.0"
311                 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/threadpoolctl-3.0.0/threadpoolctl-3.0.0-py3-none-any.whl --no-deps
312                 if [ $? -ne 0 ]
313                 then
314                     echo "FATAL: could not install readpoolctl 3.0.0"
315                     exit 6
316                 fi
317                 echo "INFO: install joblib-1.1.0"
318                 ${PYTHONBIN} -m pip install  --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/joblib-1.1.0/joblib-1.1.0-py2.py3-none-any.whl --no-deps
319                 if [ $? -ne 0 ]
320                 then
321                     echo "FATAL: could not install joblib-1.1.0"
322                     exit 6
323                 fi
324                 echo "INFO: install decorator-5.1.0"
325                 ${PYTHONBIN} -m pip install  --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/decorator-5.1.0/decorator-5.1.0-py3-none-any.whl --no-deps
326                 if [ $? -ne 0 ]
327                 then
328                     echo "FATAL: could not install decorator-5.1.0"
329                     exit 6
330                 fi
331                 echo "INFO: install scikit-learn-0.24.2"
332                 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/scikit-learn-0.24.2/scikit-learn-0.24.2.tar.gz --no-deps
333                 if [ $? -ne 0 ]
334                 then
335                     echo "FATAL: could not install scikit-0.24.2"
336                     exit 6
337                 fi
338             fi
339         fi
340
341         cd  $BUILD_DIR
342         mkdir ${BUILD_DIR}/$k
343         cd ${BUILD_DIR}/$k
344         cp -R $SOURCE_DIR/$k-${OTP[$k]}/* .
345         #
346         $PYTHONBIN setup.py build
347         if [ $? -ne 0 ]
348         then
349             echo "ERROR on ${PYTHONBIN} setup.py  build"
350             exit 4
351         fi
352         #
353         $PYTHONBIN setup.py install --prefix=$PRODUCT_INSTALL
354         if [ $? -ne 0 ]
355         then
356             echo "ERROR on ${PYTHONBIN} setup.py  install --prefix=$PRODUCT_INSTALL"
357             exit 5
358         fi
359     done
360
361     #
362     # O P E N T U R N S
363     #
364     if [ -f ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py ]; then
365         echo "INFO: site.py already installed"
366     elif [ "$SAT_Python_IS_NATIVE" == "1" ]; then
367         # check first whether the init.py file is installed
368         echo "WARNING: missing init.py file. Installing it from system Python installation"
369         SITE_PATCH=
370         LINUX_DISTRIBUTION="$DIST_NAME$DIST_VERSION"
371         case $LINUX_DISTRIBUTION in
372             DB11)
373                 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
374                 ;;
375             DB10)
376                 SITE_PATCH=/usr/lib/python3/dist-packages/setuptools/site-patch.py
377                 ;;
378             UB22*)
379                 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
380                 ;;
381             UB20*)
382                 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
383                 ;;
384             FD32)
385                 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
386                 ;;
387             FD36)
388                 ###SITE_PATCH=
389                 SITE_PATCH=$SOURCE_DIR/addons/site-patch.py
390                 ;;
391             FD34)
392                 ###SITE_PATCH=
393                 SITE_PATCH=$SOURCE_DIR/addons/site-patch.py
394                 ;;
395             CO8*)
396                 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
397                 ;;
398             *)
399                 SITE_PATCH=$SOURCE_DIR/addons/site-patch.py
400                 ;;
401         esac
402         # check whether this file exists
403         if [ "${SITE_PATCH}" == "" ]; then
404             cp $SOURCE_DIR/addons/site-patch.py ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py
405         else
406             cp $SITE_PATCH ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py
407         fi
408     elif [ -f ${PYTHON_ROOT_DIR}/lib/python${PYTHON_VERSION}/site-packages/setuptools/site-patch.py ]; then
409         cp ${PYTHON_ROOT_DIR}/lib/python${PYTHON_VERSION}/site-packages/setuptools/site-patch.py ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py
410     else
411         echo "ERROR: could not find site-patch.py"
412         exit 7
413     fi
414 fi
415
416 cd ${PRODUCT_INSTALL}/lib
417 # On some nodes, the link to OT is not done properly.
418 # In addition to this issue, it seems that there is a bug in openturns 1.19  which uses 20 instead of 19 as suffix.
419 if [[ ! -f libOT.so.0 ]]; then
420     echo "INFO: Fixing libOT.so"
421     ln -sf libOT.so.0.20.0 libOT.so.0.20
422     ln -sf libOT.so.0.20 libOT.so.0
423     ln -sf libOT.so.0 libOT.so
424 fi
425
426 echo
427 echo "########## END"