3 echo "##########################################################################"
4 echo "openturns" $VERSION
5 echo "##########################################################################"
7 # we don't install in python directory -> modify environment as described in INSTALL file
9 mkdir -p $PRODUCT_INSTALL/lib/python${PYTHON_VERSION}/site-packages
10 export PATH=$(pwd)/bin:$PATH
11 export PYTHONPATH=$(pwd):$PYTHONPATH
12 export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages:$PYTHONPATH
15 if [ -n "$SAT_HPC" ] && [ -n "$MPI_ROOT_DIR" ]; then
16 echo "WARNING: setting CC and CXX environment variables and target MPI wrapper"
17 CMAKE_OPTIONS+=" -DCMAKE_CXX_COMPILER:STRING=${MPI_CXX_COMPILER}"
18 CMAKE_OPTIONS+=" -DCMAKE_C_COMPILER:STRING=${MPI_C_COMPILER}"
21 CMAKE_OPTIONS+=" -DCMAKE_INSTALL_PREFIX:STRING=${PRODUCT_INSTALL}"
22 CMAKE_OPTIONS+=" -DCMAKE_INSTALL_LIBDIR:STRING=lib"
23 CMAKE_OPTIONS+=" -DCMAKE_BUILD_TYPE:STRING=Release"
24 CMAKE_OPTIONS+=" -DPYTHON_EXECUTABLE=${PYTHONBIN}"
26 if [ -n "$SWIG_ROOT_DIR" ] && [ "$SAT_swig_IS_NATIVE" != "1" ]; then
27 CMAKE_OPTIONS+=" -DSWIG_EXECUTABLE=${SWIG_ROOT_DIR}/bin/swig"
30 if [ -n "$TBB_ROOT_DIR" ] && [ "$SAT_tbb_IS_NATIVE" != "1" ]; then
31 CMAKE_OPTIONS+=" -DTBB_ROOT_DIR=${TBB_ROOT_DIR}"
32 CMAKE_OPTIONS+=" -Dtbb_DIR=${TBB_ROOT_DIR}/lib/cmake"
35 # https://github.com/persalys/persalys/issues/745
36 LINUX_DISTRIBUTION="$DIST_NAME$DIST_VERSION"
37 case $LINUX_DISTRIBUTION in
39 echo "WARNING: switching OFF TBB support"
40 CMAKE_OPTIONS+=" -DUSE_TBB=OFF"
47 if [ -n "$LAPACK_ROOT_DIR" ] && [ "$SAT_lapack_IS_NATIVE" != "1" ]; then
48 CMAKE_OPTIONS+=" -DLAPACK_DIR=${LAPACK_ROOT_DIR}/lib/cmake/lapack-3.8.0"
49 CMAKE_OPTIONS+=" -DCBLAS_DIR=${LAPACK_ROOT_DIR}/lib/cmake/cblas-3.8.0"
50 CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libcblas.so"
51 CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libblas.so"
55 if [ -n "$LIBXML2_ROOT_DIR" ] && [ "$SAT_libxml2_IS_NATIVE" != "1" ]; then
56 CMAKE_OPTIONS+=" -DLIBXML2_INCLUDE_DIR:STRING=${LIBXML2_ROOT_DIR}/include/libxml2"
57 CMAKE_OPTIONS+=" -DLIBXML2_LIBRARIES:STRING=${LIBXML2_ROOT_DIR}/lib/libxml2.so"
58 CMAKE_OPTIONS+=" -DLIBXML2_XMLLINT_EXECUTABLE=${LIBXML2_ROOT_DIR}/bin/xmllint"
62 if [ -n "$HDF5_ROOT_DIR" ] && [ "$SAT_hdf5_IS_NATIVE" != "1" ]; then
63 CMAKE_OPTIONS+=" -DHDF5_DIR:PATH=${HDF5_ROOT_DIR}/share/cmake/hdf5"
64 CMAKE_OPTIONS+=" -DHDF5_USE_STATIC_LIBRARIES:BOOL=OFF"
65 CMAKE_OPTIONS+=" -DHDF5_ROOT:PATH=${HDF5_ROOT_DIR}"
66 CMAKE_OPTIONS+=" -DHDF5_hdf5_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib"
67 CMAKE_OPTIONS+=" -DHDF5_hdf5_hl_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib/libhdf5_hl.so"
68 CMAKE_OPTIONS+=" -DHDF5_HL_LIBRARY=${HDF5_ROOT_DIR}/lib/libhdf5_hl.so"
69 CMAKE_OPTIONS+=" -DHDF5_C_INCLUDE_DIR=${HDF5_ROOT_DIR}/include"
73 if [ -n "$CMINPACK_ROOT_DIR" ] && [ "$SAT_cminpack_IS_NATIVE" != "1" ]; then
74 CMAKE_OPTIONS+=" -DCMINPACK_ROOT_DIR=${CMINPACK_ROOT_DIR}"
75 CMAKE_OPTIONS+=" -DCMINPACK_INCLUDE_DIR=${CMINPACK_ROOT_DIR}/include/cminpack-1"
76 CMAKE_OPTIONS+=" -DCMINPACK_LIBRARY=$CMINPACK_ROOT_DIR/lib/libcminpack_s.a"
78 CMAKE_OPTIONS+=" -DCMINPACK_ROOT_DIR=${CMINPACK_ROOT_DIR}"
79 CMAKE_OPTIONS+=" -DCMINPACK_INCLUDE_DIR=${CMINPACK_ROOT_DIR}/include/cminpack-1"
83 if [ -n "$LAPACK_ROOT_DIR" ] && [ "$SAT_lapack_IS_NATIVE" != "1" ]; then
84 CMAKE_OPTIONS+=" -DLAPACK_DIR=${LAPACK_ROOT_DIR}/lib/cmake/lapack-3.8.0"
85 CMAKE_OPTIONS+=" -DCBLAS_DIR=${LAPACK_ROOT_DIR}/lib/cmake/cblas-3.8.0"
86 CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libcblas.so"
87 CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libblas.so"
90 if [[ $DIST_NAME == "CO" && $DIST_VERSION == "8" && -f /usr/lib64/libcblas.so && -f /usr/lib64/libblas.so ]]; then
91 CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=/usr/lib64/libcblas.so"
92 CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=/usr/lib64/libblas.so"
96 if [ -n "$LIBXML2_ROOT_DIR" ] && [ "$SAT_libxml2_IS_NATIVE" != "1" ]; then
97 CMAKE_OPTIONS+=" -DLIBXML2_INCLUDE_DIR:STRING=${LIBXML2_ROOT_DIR}/include/libxml2"
98 CMAKE_OPTIONS+=" -DLIBXML2_LIBRARIES:STRING=${LIBXML2_ROOT_DIR}/lib/libxml2.so"
99 CMAKE_OPTIONS+=" -DLIBXML2_XMLLINT_EXECUTABLE=${LIBXML2_ROOT_DIR}/bin/xmllint"
103 if [ -n "$NLOPT_ROOT_DIR" ] && [ "$SAT_nlopt_IS_NATIVE" != "1" ]; then
104 CMAKE_OPTIONS+=" -DNLOPT_INCLUDE_DIRS:STRING=${NLOPT_ROOT_DIR}/include"
105 CMAKE_OPTIONS+=" -DNLOPT_LIBRARIES:STRING=${NLOPT_ROOT_DIR}/lib"
106 CMAKE_OPTIONS+=" -DNLOPT_DIR:STRING=${NLOPT_ROOT_DIR}"
110 echo "*** cmake" $CMAKE_OPTIONS
113 mkdir -p $BUILD_DIR/openturns
114 mkdir -p $BUILD_DIR/cache/pip
115 cd $BUILD_DIR/openturns
116 cmake $CMAKE_OPTIONS $SOURCE_DIR/openturns-1.19
119 echo "ERROR on cmake"
124 echo "*** make" $MAKE_OPTIONS
133 echo "*** make install"
137 echo "ERROR on make install"
142 echo "*** check installation"
144 if [ -d "${PRODUCT_INSTALL}/lib64" ]
146 mv ${PRODUCT_INSTALL}/lib64/* ${PRODUCT_INSTALL}/lib
147 rmdir ${PRODUCT_INSTALL}/lib64
150 if [[ -d "${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/dist-packages" ]]; then
151 echo "WARNING: renaming ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/dist-packages as ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages"
152 cd ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}
154 mv dist-packages site-packages
156 cd $BUILD_DIR/openturns
159 export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages:${PYTHONPATH}
160 export LD_LIBRARY_PATH=${PRODUCT_INSTALL}/lib:${LD_LIBRARY_PATH}
161 chmod +x ${SOURCE_DIR}/openturns-1.19/python/test/t_features.py
162 ${SOURCE_DIR}/openturns-1.19/python/test/t_features.py
165 echo "ERROR testing Openturns features...."
169 LD_LIBRARY_PATH_REF=${LD_LIBRARY_PATH}
170 if [[ -d "$SOURCE_DIR/otfftw-0.12" ]]; then
174 OTC["otmixmod"]="0.13"
175 OTC["otmorris"]="0.13"
177 OTC["otrobopt"]="0.11"
178 OTC["otsubsetinverse"]="1.9"
184 echo "*** C O M P O N E N T : $k-${OTC[$k]} "
185 if [[ $k == "otagrum" ]]; then
186 echo "WARNING: skipping $k.."
190 mkdir ${BUILD_DIR}/$k
193 if [[ $DIST_NAME == "CO" ]]; then
194 CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF" # needs extra latex modules on CentOS 7, 8
195 CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF"
197 if [[ $k == "otmixmod" ]]; then
198 CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
199 CMAKE_EXTRA_OPTIONS+=" -DSOURCEFILES=$SOURCE_DIR/$k-${OTC[$k]}"
200 elif [[ $k == "otsubsetinverse" ]]; then
201 CMAKE_EXTRA_OPTIONS+=" -DOPENTURNS_HOME=$PRODUCT_INSTALL"
202 CMAKE_EXTRA_OPTIONS+=" -DCMAKE_SKIP_INSTALL_RPATH:BOOL=ON"
203 CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF"
204 elif [[ $k == "otfftw" ]]; then
205 CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
206 elif [[ $k == "otmorris" ]]; then
207 case $LINUX_DISTRIBUTION in
209 echo "WARNING: switching OFF documentation build"
210 CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
211 CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF" # missing package to be installed.
214 elif [[ $k == "otrobopt" ]]; then
215 case $LINUX_DISTRIBUTION in
217 echo "WARNING: switching OFF documentation build"
218 CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
219 CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF" # missing package to be installed.
222 elif [[ $k == "otsvm" ]]; then
223 case $LINUX_DISTRIBUTION in
225 echo "WARNING: switching OFF documentation build"
226 CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
227 CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF" # missing package to be installed.
230 elif [[ $k == "otpmml" ]]; then
231 CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
235 echo "*** cmake " $CMAKE_OPTIONS ${CMAKE_EXTRA_OPTIONS} $SOURCE_DIR/$k-${OTC[$k]}
236 cmake $CMAKE_OPTIONS ${CMAKE_EXTRA_OPTIONS} $SOURCE_DIR/$k-${OTC[$k]}
239 echo "ERROR on cmake"
244 echo "*** make" $MAKE_OPTIONS
253 echo "*** make install"
257 echo "ERROR on make install"
265 OTP["otwrapy"]="0.11"
269 echo "*** C O M P O N E N T : $k-${OTP[$k]} "
271 if [ "$SAT_Python_IS_NATIVE" == "1" ]; then
272 if [ $k == "otfmi" ]; then
273 echo "INFO: install dill-0.3.4"
274 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/dill-0.3.4/dill-0.3.4-py2.py3-none-any.whl --no-deps --prefix=$PRODUCT_INSTALL
277 echo "FATAL: could not install dill-0.3.4"
280 elif [ $k == "otpod" ]; then
281 if [[ $DIST_NAME == "CO" && $DIST_VERSION == "8" ]]; then
282 echo "*** skipping: since system Cython too old"
285 echo "INFO: install scikit-learn-0.24.2"
286 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/scikit-learn-0.24.2/scikit-learn-0.24.2.tar.gz --no-deps --prefix=$PRODUCT_INSTALL
289 echo "FATAL: could not install scikit-0.24.2"
292 echo "INFO: install threadpoolctl-3.0.0"
293 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/threadpoolctl-3.0.0/threadpoolctl-3.0.0-py3-none-any.whl --no-deps --prefix=$PRODUCT_INSTALL
296 echo "FATAL: could not install threadpoolctl 3.0.0"
300 else # non native Python
301 if [[ $k == "otfmi" ]]; then
302 echo "INFO: install dill-0.3.4"
303 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/dill-0.3.4/dill-0.3.4-py2.py3-none-any.whl --no-deps
306 echo "FATAL: could not install dikk-0.3.4"
309 elif [[ $k == "otpod" ]]; then
310 echo "INFO: install threadpoolctl-3.0.0"
311 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/threadpoolctl-3.0.0/threadpoolctl-3.0.0-py3-none-any.whl --no-deps
314 echo "FATAL: could not install readpoolctl 3.0.0"
317 echo "INFO: install joblib-1.1.0"
318 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/joblib-1.1.0/joblib-1.1.0-py2.py3-none-any.whl --no-deps
321 echo "FATAL: could not install joblib-1.1.0"
324 echo "INFO: install decorator-5.1.0"
325 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/decorator-5.1.0/decorator-5.1.0-py3-none-any.whl --no-deps
328 echo "FATAL: could not install decorator-5.1.0"
331 echo "INFO: install scikit-learn-0.24.2"
332 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/scikit-learn-0.24.2/scikit-learn-0.24.2.tar.gz --no-deps
335 echo "FATAL: could not install scikit-0.24.2"
342 mkdir ${BUILD_DIR}/$k
344 cp -R $SOURCE_DIR/$k-${OTP[$k]}/* .
346 $PYTHONBIN setup.py build
349 echo "ERROR on ${PYTHONBIN} setup.py build"
353 $PYTHONBIN setup.py install --prefix=$PRODUCT_INSTALL
356 echo "ERROR on ${PYTHONBIN} setup.py install --prefix=$PRODUCT_INSTALL"
364 if [ -f ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py ]; then
365 echo "INFO: site.py already installed"
366 elif [ "$SAT_Python_IS_NATIVE" == "1" ]; then
367 # check first whether the init.py file is installed
368 echo "WARNING: missing init.py file. Installing it from system Python installation"
370 LINUX_DISTRIBUTION="$DIST_NAME$DIST_VERSION"
371 case $LINUX_DISTRIBUTION in
373 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
376 SITE_PATCH=/usr/lib/python3/dist-packages/setuptools/site-patch.py
379 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
382 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
385 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
389 SITE_PATCH=$SOURCE_DIR/addons/site-patch.py
393 SITE_PATCH=$SOURCE_DIR/addons/site-patch.py
396 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
399 SITE_PATCH=$SOURCE_DIR/addons/site-patch.py
402 # check whether this file exists
403 if [ "${SITE_PATCH}" == "" ]; then
404 cp $SOURCE_DIR/addons/site-patch.py ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py
406 cp $SITE_PATCH ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py
408 elif [ -f ${PYTHON_ROOT_DIR}/lib/python${PYTHON_VERSION}/site-packages/setuptools/site-patch.py ]; then
409 cp ${PYTHON_ROOT_DIR}/lib/python${PYTHON_VERSION}/site-packages/setuptools/site-patch.py ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py
411 echo "ERROR: could not find site-patch.py"
416 cd ${PRODUCT_INSTALL}/lib
417 # On some nodes, the link to OT is not done properly.
418 # In addition to this issue, it seems that there is a bug in openturns 1.19 which uses 20 instead of 19 as suffix.
419 if [[ ! -f libOT.so.0 ]]; then
420 echo "INFO: Fixing libOT.so"
421 ln -sf libOT.so.0.20.0 libOT.so.0.20
422 ln -sf libOT.so.0.20 libOT.so.0
423 ln -sf libOT.so.0 libOT.so
427 echo "########## END"