3 echo "##########################################################################"
4 echo "openturns" $VERSION
5 echo "##########################################################################"
7 # we don't install in python directory -> modify environment as described in INSTALL file
9 #mkdir -p $PRODUCT_INSTALL/lib/python${PYTHON_VERSION}/site-packages
10 export PATH=$(pwd)/bin:$PATH
11 export PYTHONPATH=$(pwd):$PYTHONPATH
12 export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages:$PYTHONPATH
15 if [ -n "$SAT_HPC" ] && [ -n "$MPI_ROOT_DIR" ]; then
16 echo "WARNING: setting CC and CXX environment variables and target MPI wrapper"
17 CMAKE_OPTIONS+=" -DCMAKE_CXX_COMPILER:STRING=${MPI_CXX_COMPILER}"
18 CMAKE_OPTIONS+=" -DCMAKE_C_COMPILER:STRING=${MPI_C_COMPILER}"
21 CMAKE_OPTIONS+=" -DCMAKE_INSTALL_PREFIX:STRING=${PRODUCT_INSTALL}"
22 CMAKE_OPTIONS+=" -DCMAKE_INSTALL_LIBDIR:STRING=lib"
23 CMAKE_OPTIONS+=" -DCMAKE_BUILD_TYPE:STRING=Release"
24 CMAKE_OPTIONS+=" -DPYTHON_EXECUTABLE=${PYTHONBIN}"
26 if [ -n "$SWIG_ROOT_DIR" ] && [ "$SAT_swig_IS_NATIVE" != "1" ]; then
27 CMAKE_OPTIONS+=" -DSWIG_EXECUTABLE=${SWIG_ROOT_DIR}/bin/swig"
30 if [ -n "$TBB_ROOT_DIR" ] && [ "$SAT_tbb_IS_NATIVE" != "1" ]; then
31 CMAKE_OPTIONS+=" -DTBB_ROOT_DIR=${TBB_ROOT_DIR}"
32 CMAKE_OPTIONS+=" -Dtbb_DIR=${TBB_ROOT_DIR}/lib/cmake"
35 # https://github.com/persalys/persalys/issues/745
36 LINUX_DISTRIBUTION="$DIST_NAME$DIST_VERSION"
37 case $LINUX_DISTRIBUTION in
39 echo "WARNING: switching OFF TBB support"
40 CMAKE_OPTIONS+=" -DUSE_TBB=OFF"
47 if [ -n "$LAPACK_ROOT_DIR" ] && [ "$SAT_lapack_IS_NATIVE" != "1" ]; then
48 CMAKE_OPTIONS+=" -DLAPACK_DIR=${LAPACK_ROOT_DIR}/lib/cmake/lapack-3.8.0"
49 CMAKE_OPTIONS+=" -DCBLAS_DIR=${LAPACK_ROOT_DIR}/lib/cmake/cblas-3.8.0"
50 CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libcblas.so"
51 CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libblas.so"
55 if [ -n "$LIBXML2_ROOT_DIR" ] && [ "$SAT_libxml2_IS_NATIVE" != "1" ]; then
56 CMAKE_OPTIONS+=" -DLIBXML2_INCLUDE_DIR:STRING=${LIBXML2_ROOT_DIR}/include/libxml2"
57 CMAKE_OPTIONS+=" -DLIBXML2_LIBRARIES:STRING=${LIBXML2_ROOT_DIR}/lib/libxml2.so"
58 CMAKE_OPTIONS+=" -DLIBXML2_XMLLINT_EXECUTABLE=${LIBXML2_ROOT_DIR}/bin/xmllint"
62 if [ -n "$HDF5_ROOT_DIR" ] && [ "$SAT_hdf5_IS_NATIVE" != "1" ]; then
63 CMAKE_OPTIONS+=" -DHDF5_DIR:PATH=${HDF5_ROOT_DIR}/share/cmake/hdf5"
64 CMAKE_OPTIONS+=" -DHDF5_USE_STATIC_LIBRARIES:BOOL=OFF"
65 CMAKE_OPTIONS+=" -DHDF5_ROOT:PATH=${HDF5_ROOT_DIR}"
66 CMAKE_OPTIONS+=" -DHDF5_hdf5_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib"
67 CMAKE_OPTIONS+=" -DHDF5_hdf5_hl_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib/libhdf5_hl.so"
68 CMAKE_OPTIONS+=" -DHDF5_HL_LIBRARY=${HDF5_ROOT_DIR}/lib/libhdf5_hl.so"
69 CMAKE_OPTIONS+=" -DHDF5_C_INCLUDE_DIR=${HDF5_ROOT_DIR}/include"
73 if [ -n "$CMINPACK_ROOT_DIR" ] && [ "$SAT_cminpack_IS_NATIVE" != "1" ]; then
74 CMAKE_OPTIONS+=" -DCMINPACK_ROOT_DIR=${CMINPACK_ROOT_DIR}"
75 CMAKE_OPTIONS+=" -DCMINPACK_INCLUDE_DIR=${CMINPACK_ROOT_DIR}/include/cminpack-1"
76 CMAKE_OPTIONS+=" -DCMINPACK_LIBRARY=$CMINPACK_ROOT_DIR/lib/libcminpack_s.a"
78 CMAKE_OPTIONS+=" -DCMINPACK_ROOT_DIR=${CMINPACK_ROOT_DIR}"
79 CMAKE_OPTIONS+=" -DCMINPACK_INCLUDE_DIR=${CMINPACK_ROOT_DIR}/include/cminpack-1"
83 if [ -n "$LAPACK_ROOT_DIR" ] && [ "$SAT_lapack_IS_NATIVE" != "1" ]; then
84 CMAKE_OPTIONS+=" -DLAPACK_DIR=${LAPACK_ROOT_DIR}/lib/cmake/lapack-3.8.0"
85 CMAKE_OPTIONS+=" -DCBLAS_DIR=${LAPACK_ROOT_DIR}/lib/cmake/cblas-3.8.0"
86 CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libcblas.so"
87 CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libblas.so"
90 if [[ $DIST_NAME == "CO" && $DIST_VERSION == "8" && -f /usr/lib64/libcblas.so && -f /usr/lib64/libblas.so ]]; then
91 CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=/usr/lib64/libcblas.so"
92 CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=/usr/lib64/libblas.so"
96 if [ -n "$LIBXML2_ROOT_DIR" ] && [ "$SAT_libxml2_IS_NATIVE" != "1" ]; then
97 CMAKE_OPTIONS+=" -DLIBXML2_INCLUDE_DIR:STRING=${LIBXML2_ROOT_DIR}/include/libxml2"
98 CMAKE_OPTIONS+=" -DLIBXML2_LIBRARIES:STRING=${LIBXML2_ROOT_DIR}/lib/libxml2.so"
99 CMAKE_OPTIONS+=" -DLIBXML2_XMLLINT_EXECUTABLE=${LIBXML2_ROOT_DIR}/bin/xmllint"
103 if [ -n "$NLOPT_ROOT_DIR" ] && [ "$SAT_nlopt_IS_NATIVE" != "1" ]; then
104 CMAKE_OPTIONS+=" -DNLOPT_INCLUDE_DIRS:STRING=${NLOPT_ROOT_DIR}/include"
105 CMAKE_OPTIONS+=" -DNLOPT_LIBRARIES:STRING=${NLOPT_ROOT_DIR}/lib"
106 CMAKE_OPTIONS+=" -DNLOPT_DIR:STRING=${NLOPT_ROOT_DIR}"
110 echo "*** cmake" $CMAKE_OPTIONS
113 mkdir -p $BUILD_DIR/openturns
114 mkdir -p $BUILD_DIR/cache/pip
115 cd $BUILD_DIR/openturns
116 cmake $CMAKE_OPTIONS $SOURCE_DIR/openturns-1.19
119 echo "ERROR on cmake"
124 echo "*** make" $MAKE_OPTIONS
133 echo "*** make install"
137 echo "ERROR on make install"
142 echo "*** check installation"
143 if [! -d "${PRODUCT_INSTALL}/lib" ]; then
144 mkdir -p ${PRODUCT_INSTALL}/lib
147 if [ -d "${PRODUCT_INSTALL}/lib64" ]; then
148 echo "WARNING: moving lib64 to lib"
149 mv ${PRODUCT_INSTALL}/lib64/* ${PRODUCT_INSTALL}/lib/
150 rmdir ${PRODUCT_INSTALL}/lib64
151 elif [ -d "${PRODUCT_INSTALL}/local/lib64" ]; then
152 echo "WARNING: moving local/lib64 to lib"
153 mv ${PRODUCT_INSTALL}/local/lib64/* ${PRODUCT_INSTALL}/lib/
154 rmdir ${PRODUCT_INSTALL}/local/lib64
157 if [[ -d "${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/dist-packages" ]]; then
158 echo "WARNING: renaming ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/dist-packages as ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages"
159 cd ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}
161 mv dist-packages site-packages
163 cd $BUILD_DIR/openturns
166 export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages:${PYTHONPATH}
167 export LD_LIBRARY_PATH=${PRODUCT_INSTALL}/lib:${LD_LIBRARY_PATH}
168 chmod +x ${SOURCE_DIR}/openturns-1.19/python/test/t_features.py
169 ${SOURCE_DIR}/openturns-1.19/python/test/t_features.py
172 echo "ERROR testing Openturns features...."
176 LD_LIBRARY_PATH_REF=${LD_LIBRARY_PATH}
177 if [[ -d "$SOURCE_DIR/otfftw-0.12" ]]; then
181 OTC["otmixmod"]="0.13"
182 OTC["otmorris"]="0.13"
184 OTC["otrobopt"]="0.11"
185 OTC["otsubsetinverse"]="1.9"
191 echo "*** C O M P O N E N T : $k-${OTC[$k]} "
192 if [[ $k == "otagrum" ]]; then
193 echo "WARNING: skipping $k.."
197 mkdir ${BUILD_DIR}/$k
200 if [[ $DIST_NAME == "CO" ]]; then
201 CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF" # needs extra latex modules on CentOS 7, 8
202 CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF"
204 if [[ $k == "otmixmod" ]]; then
205 CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
206 CMAKE_EXTRA_OPTIONS+=" -DSOURCEFILES=$SOURCE_DIR/$k-${OTC[$k]}"
207 elif [[ $k == "otsubsetinverse" ]]; then
208 CMAKE_EXTRA_OPTIONS+=" -DOPENTURNS_HOME=$PRODUCT_INSTALL"
209 CMAKE_EXTRA_OPTIONS+=" -DCMAKE_SKIP_INSTALL_RPATH:BOOL=ON"
210 CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF"
211 elif [[ $k == "otfftw" ]]; then
212 CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
213 elif [[ $k == "otmorris" ]]; then
214 case $LINUX_DISTRIBUTION in
216 echo "WARNING: switching OFF documentation build"
217 CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
218 CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF" # missing package to be installed.
221 elif [[ $k == "otrobopt" ]]; then
222 case $LINUX_DISTRIBUTION in
224 echo "WARNING: switching OFF documentation build"
225 CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
226 CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF" # missing package to be installed.
229 elif [[ $k == "otsvm" ]]; then
230 case $LINUX_DISTRIBUTION in
232 echo "WARNING: switching OFF documentation build"
233 CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
234 CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF" # missing package to be installed.
237 elif [[ $k == "otpmml" ]]; then
238 CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
242 echo "*** cmake " $CMAKE_OPTIONS ${CMAKE_EXTRA_OPTIONS} $SOURCE_DIR/$k-${OTC[$k]}
243 cmake $CMAKE_OPTIONS ${CMAKE_EXTRA_OPTIONS} $SOURCE_DIR/$k-${OTC[$k]}
246 echo "ERROR on cmake"
251 echo "*** make" $MAKE_OPTIONS
260 echo "*** make install"
264 echo "ERROR on make install"
272 OTP["otwrapy"]="0.11"
276 echo "*** C O M P O N E N T : $k-${OTP[$k]} "
278 if [ "$SAT_Python_IS_NATIVE" == "1" ]; then
279 if [ $k == "otfmi" ]; then
280 echo "INFO: install dill-0.3.4"
281 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/dill-0.3.4/dill-0.3.4-py2.py3-none-any.whl --no-deps --prefix=$PRODUCT_INSTALL
284 echo "FATAL: could not install dill-0.3.4"
287 elif [ $k == "otpod" ]; then
288 if [[ $DIST_NAME == "CO" && $DIST_VERSION == "8" ]]; then
289 echo "*** skipping: since system Cython too old"
292 echo "INFO: install scikit-learn-0.24.2"
293 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/scikit-learn-0.24.2/scikit-learn-0.24.2.tar.gz --no-deps --prefix=$PRODUCT_INSTALL
296 echo "FATAL: could not install scikit-0.24.2"
299 echo "INFO: install threadpoolctl-3.0.0"
300 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/threadpoolctl-3.0.0/threadpoolctl-3.0.0-py3-none-any.whl --no-deps --prefix=$PRODUCT_INSTALL
303 echo "FATAL: could not install threadpoolctl 3.0.0"
307 else # non native Python
308 if [[ $k == "otfmi" ]]; then
309 echo "INFO: install dill-0.3.4"
310 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/dill-0.3.4/dill-0.3.4-py2.py3-none-any.whl --no-deps
313 echo "FATAL: could not install dikk-0.3.4"
316 elif [[ $k == "otpod" ]]; then
317 echo "INFO: install threadpoolctl-3.0.0"
318 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/threadpoolctl-3.0.0/threadpoolctl-3.0.0-py3-none-any.whl --no-deps
321 echo "FATAL: could not install readpoolctl 3.0.0"
324 echo "INFO: install joblib-1.1.0"
325 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/joblib-1.1.0/joblib-1.1.0-py2.py3-none-any.whl --no-deps
328 echo "FATAL: could not install joblib-1.1.0"
331 echo "INFO: install decorator-5.1.0"
332 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/decorator-5.1.0/decorator-5.1.0-py3-none-any.whl --no-deps
335 echo "FATAL: could not install decorator-5.1.0"
338 echo "INFO: install scikit-learn-0.24.2"
339 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/scikit-learn-0.24.2/scikit-learn-0.24.2.tar.gz --no-deps
342 echo "FATAL: could not install scikit-0.24.2"
349 mkdir ${BUILD_DIR}/$k
351 cp -R $SOURCE_DIR/$k-${OTP[$k]}/* .
353 $PYTHONBIN setup.py build
356 echo "ERROR on ${PYTHONBIN} setup.py build"
360 $PYTHONBIN setup.py install --prefix=$PRODUCT_INSTALL
363 echo "ERROR on ${PYTHONBIN} setup.py install --prefix=$PRODUCT_INSTALL"
371 if [ -f ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py ]; then
372 echo "INFO: site.py already installed"
373 elif [ "$SAT_Python_IS_NATIVE" == "1" ]; then
374 # check first whether the init.py file is installed
375 echo "WARNING: missing init.py file. Installing it from system Python installation"
377 LINUX_DISTRIBUTION="$DIST_NAME$DIST_VERSION"
378 case $LINUX_DISTRIBUTION in
380 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
383 SITE_PATCH=/usr/lib/python3/dist-packages/setuptools/site-patch.py
386 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
389 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
392 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
396 SITE_PATCH=$SOURCE_DIR/addons/site-patch.py
400 SITE_PATCH=$SOURCE_DIR/addons/site-patch.py
403 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
406 SITE_PATCH=$SOURCE_DIR/addons/site-patch.py
409 # check whether this file exists
410 if [ "${SITE_PATCH}" == "" ]; then
411 cp $SOURCE_DIR/addons/site-patch.py ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py
413 cp $SITE_PATCH ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py
415 elif [ -f ${PYTHON_ROOT_DIR}/lib/python${PYTHON_VERSION}/site-packages/setuptools/site-patch.py ]; then
416 cp ${PYTHON_ROOT_DIR}/lib/python${PYTHON_VERSION}/site-packages/setuptools/site-patch.py ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py
418 echo "ERROR: could not find site-patch.py"
423 cd ${PRODUCT_INSTALL}/lib
424 # On some nodes, the link to OT is not done properly.
425 # In addition to this issue, it seems that there is a bug in openturns 1.19 which uses 20 instead of 19 as suffix.
426 if [[ ! -f libOT.so.0 ]]; then
427 echo "INFO: Fixing libOT.so"
428 ln -sf libOT.so.0.20.0 libOT.so.0.20
429 ln -sf libOT.so.0.20 libOT.so.0
430 ln -sf libOT.so.0 libOT.so
434 echo "########## END"