3 echo "##########################################################################"
4 echo "openturns" $VERSION
5 echo "##########################################################################"
7 # we don't install in python directory -> modify environment as described in INSTALL file
9 mkdir -p $PRODUCT_INSTALL/lib/python${PYTHON_VERSION}/site-packages
10 export PATH=$(pwd)/bin:$PATH
11 export PYTHONPATH=$(pwd):$PYTHONPATH
12 export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages:$PYTHONPATH
15 if [ -n "$SAT_HPC" ] && [ -n "$MPI_ROOT_DIR" ]; then
16 echo "WARNING: setting CC and CXX environment variables and target MPI wrapper"
17 CMAKE_OPTIONS+=" -DCMAKE_CXX_COMPILER:STRING=${MPI_CXX_COMPILER}"
18 CMAKE_OPTIONS+=" -DCMAKE_C_COMPILER:STRING=${MPI_C_COMPILER}"
21 CMAKE_OPTIONS+=" -DCMAKE_INSTALL_PREFIX:STRING=${PRODUCT_INSTALL}"
22 CMAKE_OPTIONS+=" -DCMAKE_INSTALL_LIBDIR:STRING=lib"
23 CMAKE_OPTIONS+=" -DCMAKE_BUILD_TYPE:STRING=Release"
24 CMAKE_OPTIONS+=" -DPYTHON_EXECUTABLE=${PYTHONBIN}"
26 if [ -n "$SWIG_ROOT_DIR" ] && [ "$SAT_swig_IS_NATIVE" != "1" ]; then
27 CMAKE_OPTIONS+=" -DSWIG_EXECUTABLE=${SWIG_ROOT_DIR}/bin/swig"
30 if [ -n "$TBB_ROOT_DIR" ] && [ "$SAT_tbb_IS_NATIVE" != "1" ]; then
31 CMAKE_OPTIONS+=" -DTBB_ROOT_DIR=${TBB_ROOT_DIR}"
34 # https://github.com/persalys/persalys/issues/745
35 LINUX_DISTRIBUTION="$DIST_NAME$DIST_VERSION"
36 case $LINUX_DISTRIBUTION in
38 echo "WARNING: switching OFF TBB support"
39 CMAKE_OPTIONS+=" -DUSE_TBB=OFF"
46 if [ -n "$LAPACK_ROOT_DIR" ] && [ "$SAT_lapack_IS_NATIVE" != "1" ]; then
47 CMAKE_OPTIONS+=" -DLAPACK_DIR=${LAPACK_ROOT_DIR}/lib/cmake/lapack-3.8.0"
48 CMAKE_OPTIONS+=" -DCBLAS_DIR=${LAPACK_ROOT_DIR}/lib/cmake/cblas-3.8.0"
49 CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libcblas.so"
50 CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libblas.so"
54 if [ -n "$LIBXML2_ROOT_DIR" ] && [ "$SAT_libxml2_IS_NATIVE" != "1" ]; then
55 CMAKE_OPTIONS+=" -DLIBXML2_INCLUDE_DIR:STRING=${LIBXML2_ROOT_DIR}/include/libxml2"
56 CMAKE_OPTIONS+=" -DLIBXML2_LIBRARIES:STRING=${LIBXML2_ROOT_DIR}/lib/libxml2.so"
57 CMAKE_OPTIONS+=" -DLIBXML2_XMLLINT_EXECUTABLE=${LIBXML2_ROOT_DIR}/bin/xmllint"
61 if [ -n "$HDF5_ROOT_DIR" ] && [ "$SAT_hdf5_IS_NATIVE" != "1" ]; then
62 CMAKE_OPTIONS+=" -DHDF5_DIR:PATH=${HDF5_ROOT_DIR}/share/cmake/hdf5"
63 CMAKE_OPTIONS+=" -DHDF5_USE_STATIC_LIBRARIES:BOOL=OFF"
64 CMAKE_OPTIONS+=" -DHDF5_ROOT:PATH=${HDF5_ROOT_DIR}"
65 CMAKE_OPTIONS+=" -DHDF5_hdf5_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib"
66 CMAKE_OPTIONS+=" -DHDF5_hdf5_hl_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib/libhdf5_hl.so"
67 CMAKE_OPTIONS+=" -DHDF5_HL_LIBRARY=${HDF5_ROOT_DIR}/lib/libhdf5_hl.so"
68 CMAKE_OPTIONS+=" -DHDF5_C_INCLUDE_DIR=${HDF5_ROOT_DIR}/include"
72 if [ -n "$CMINPACK_ROOT_DIR" ] && [ "$SAT_cminpack_IS_NATIVE" != "1" ]; then
73 CMAKE_OPTIONS+=" -DCMINPACK_ROOT_DIR=${CMINPACK_ROOT_DIR}"
74 CMAKE_OPTIONS+=" -DCMINPACK_INCLUDE_DIR=${CMINPACK_ROOT_DIR}/include/cminpack-1"
75 CMAKE_OPTIONS+=" -DCMINPACK_LIBRARY=$CMINPACK_ROOT_DIR/lib/libcminpack_s.a"
77 CMAKE_OPTIONS+=" -DCMINPACK_ROOT_DIR=${CMINPACK_ROOT_DIR}"
78 CMAKE_OPTIONS+=" -DCMINPACK_INCLUDE_DIR=${CMINPACK_ROOT_DIR}/include/cminpack-1"
82 if [ -n "$LAPACK_ROOT_DIR" ] && [ "$SAT_lapack_IS_NATIVE" != "1" ]; then
83 CMAKE_OPTIONS+=" -DLAPACK_DIR=${LAPACK_ROOT_DIR}/lib/cmake/lapack-3.8.0"
84 CMAKE_OPTIONS+=" -DCBLAS_DIR=${LAPACK_ROOT_DIR}/lib/cmake/cblas-3.8.0"
85 CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libcblas.so"
86 CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libblas.so"
89 if [[ $DIST_NAME == "CO" && $DIST_VERSION == "8" && -f /usr/lib64/libcblas.so && -f /usr/lib64/libblas.so ]]; then
90 CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=/usr/lib64/libcblas.so"
91 CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=/usr/lib64/libblas.so"
95 if [ -n "$LIBXML2_ROOT_DIR" ] && [ "$SAT_libxml2_IS_NATIVE" != "1" ]; then
96 CMAKE_OPTIONS+=" -DLIBXML2_INCLUDE_DIR:STRING=${LIBXML2_ROOT_DIR}/include/libxml2"
97 CMAKE_OPTIONS+=" -DLIBXML2_LIBRARIES:STRING=${LIBXML2_ROOT_DIR}/lib/libxml2.so"
98 CMAKE_OPTIONS+=" -DLIBXML2_XMLLINT_EXECUTABLE=${LIBXML2_ROOT_DIR}/bin/xmllint"
102 if [ -n "$NLOPT_ROOT_DIR" ] && [ "$SAT_nlopt_IS_NATIVE" != "1" ]; then
103 CMAKE_OPTIONS+=" -DNLOPT_INCLUDE_DIRS:STRING=${NLOPT_ROOT_DIR}/include"
104 CMAKE_OPTIONS+=" -DNLOPT_LIBRARIES:STRING=${NLOPT_ROOT_DIR}/lib"
105 CMAKE_OPTIONS+=" -DNLOPT_DIR:STRING=${NLOPT_ROOT_DIR}"
111 echo "*** cmake" $CMAKE_OPTIONS
113 mkdir -p $BUILD_DIR/openturns
114 mkdir -p $BUILD_DIR/cache/pip
115 cd $BUILD_DIR/openturns
116 cmake $CMAKE_OPTIONS $SOURCE_DIR/openturns-1.18
119 echo "ERROR on cmake"
124 echo "*** make" $MAKE_OPTIONS
133 echo "*** make install"
137 echo "ERROR on make install"
142 echo "*** check installation"
144 if [ -d "${PRODUCT_INSTALL}/lib64" ]
146 mv ${PRODUCT_INSTALL}/lib64/* ${PRODUCT_INSTALL}/lib
147 rmdir ${PRODUCT_INSTALL}/lib64
150 export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages:${PYTHONPATH}
151 export LD_LIBRARY_PATH=${PRODUCT_INSTALL}/lib:${LD_LIBRARY_PATH}
152 chmod +x ${SOURCE_DIR}/openturns-1.18/python/test/t_features.py
153 ${PYTHONBIN} ${SOURCE_DIR}/openturns-1.18/python/test/t_features.py
156 echo "ERROR testing Openturns features...."
160 LD_LIBRARY_PATH_REF=${LD_LIBRARY_PATH}
161 if [[ -d "$SOURCE_DIR/otfftw-0.11" ]]; then
166 OTC["otmixmod"]="0.12"
167 OTC["otmorris"]="0.10"
169 OTC["otrobopt"]="0.10"
170 OTC["otsubsetinverse"]="1.8"
176 echo "*** C O M P O N E N T : $k-${OTC[$k]} "
177 if [[ $k == "otagrum" ]]; then
178 echo "WARNING: skipping $k.."
182 mkdir ${BUILD_DIR}/$k
185 if [[ $DIST_NAME == "CO" ]]; then
186 CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF" # needs extra latex modules on CentOS 7, 8
187 CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF"
189 if [[ $k == "otmixmod" ]]; then
190 CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
191 CMAKE_EXTRA_OPTIONS+=" -DSOURCEFILES=$SOURCE_DIR/$k-${OTC[$k]}"
192 elif [[ $k == "otsubsetinverse" ]]; then
193 CMAKE_EXTRA_OPTIONS+=" -DOPENTURNS_HOME=$PRODUCT_INSTALL"
194 CMAKE_EXTRA_OPTIONS+=" -DCMAKE_SKIP_INSTALL_RPATH:BOOL=ON"
195 CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF"
196 elif [[ $k == "otfftw" ]]; then
197 CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
198 elif [ $k == "otmorris" ] && [ "$DIST_NAME$DIST_VERSION" == "FD32" ]; then
199 CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
200 CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF" # missing package to be installed.
201 elif [[ $k == "otpmml" ]]; then
202 CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
206 echo "*** cmake " $CMAKE_OPTIONS ${CMAKE_EXTRA_OPTIONS} $SOURCE_DIR/$k-${OTC[$k]}
207 cmake $CMAKE_OPTIONS ${CMAKE_EXTRA_OPTIONS} $SOURCE_DIR/$k-${OTC[$k]}
210 echo "ERROR on cmake"
215 echo "*** make" $MAKE_OPTIONS
224 echo "*** make install"
228 echo "ERROR on make install"
235 OTP["otwrapy"]="0.10"
239 echo "*** C O M P O N E N T : $k-${OTP[$k]} "
241 if [ "$SAT_Python_IS_NATIVE" == "1" ]; then
242 if [ $k == "otfmi" ]; then
243 echo "INFO: install dill-0.3.4"
244 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/dill-0.3.4/dill-0.3.4-py2.py3-none-any.whl --no-deps --prefix=$PRODUCT_INSTALL
247 echo "FATAL: could not install dill-0.3.4"
250 elif [ $k == "otpod" ]; then
251 if [[ $DIST_NAME == "CO" && $DIST_VERSION == "8" ]]; then
252 echo "*** skipping: since system Cython too old"
255 echo "INFO: install scikit-learn-0.24.2"
256 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/scikit-learn-0.24.2/scikit-learn-0.24.2.tar.gz --no-deps --prefix=$PRODUCT_INSTALL
259 echo "FATAL: could not install scikit-0.24.2"
262 echo "INFO: install threadpoolctl-3.0.0"
263 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/threadpoolctl-3.0.0/threadpoolctl-3.0.0-py3-none-any.whl --no-deps --prefix=$PRODUCT_INSTALL
266 echo "FATAL: could not install threadpoolctl 3.0.0"
270 else # non native Python
271 if [[ $k == "otfmi" ]]; then
272 echo "INFO: install dill-0.3.4"
273 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/dill-0.3.4/dill-0.3.4-py2.py3-none-any.whl --no-deps
276 echo "FATAL: could not install dikk-0.3.4"
279 elif [[ $k == "otpod" ]]; then
280 echo "INFO: install threadpoolctl-3.0.0"
281 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/threadpoolctl-3.0.0/threadpoolctl-3.0.0-py3-none-any.whl --no-deps
284 echo "FATAL: could not install readpoolctl 3.0.0"
287 echo "INFO: install joblib-1.1.0"
288 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/joblib-1.1.0/joblib-1.1.0-py2.py3-none-any.whl --no-deps
291 echo "FATAL: could not install joblib-1.1.0"
294 echo "INFO: install decorator-5.1.0"
295 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/decorator-5.1.0/decorator-5.1.0-py3-none-any.whl --no-deps
298 echo "FATAL: could not install decorator-5.1.0"
301 echo "INFO: install scikit-learn-0.24.2"
302 ${PYTHONBIN} -m pip install --cache-dir=$BUILD_DIR/cache/pip $SOURCE_DIR/scikit-learn-0.24.2/scikit-learn-0.24.2.tar.gz --no-deps
305 echo "FATAL: could not install scikit-0.24.2"
312 mkdir ${BUILD_DIR}/$k
314 cp -R $SOURCE_DIR/$k-${OTP[$k]}/* .
316 $PYTHONBIN setup.py build
319 echo "ERROR on ${PYTHONBIN} setup.py build"
323 $PYTHONBIN setup.py install --prefix=$PRODUCT_INSTALL
326 echo "ERROR on ${PYTHONBIN} setup.py install --prefix=$PRODUCT_INSTALL"
334 if [ -f ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py ]; then
335 echo "INFO: site.py already installed"
336 elif [ "$SAT_Python_IS_NATIVE" == "1" ]; then
337 # check first whether the init.py file is installed
338 echo "WARNING: missing init.py file. Installing it from system Python installation"
340 LINUX_DISTRIBUTION="$DIST_NAME$DIST_VERSION"
341 case $LINUX_DISTRIBUTION in
343 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
346 SITE_PATCH=/usr/lib/python3/dist-packages/setuptools/site-patch.py
349 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
352 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
355 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
359 SITE_PATCH=$SOURCE_DIR/addons/site-patch.py
363 SITE_PATCH=$SOURCE_DIR/addons/site-patch.py
366 SITE_PATCH=/usr/lib/pypy/dist-packages/setuptools/site-patch.py
369 SITE_PATCH=$SOURCE_DIR/addons/site-patch.py
372 # check whether this file exists
373 if [ "${SITE_PATCH}" == "" ]; then
374 cp $SOURCE_DIR/addons/site-patch.py ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py
376 cp $SITE_PATCH ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py
378 elif [ -f ${PYTHON_ROOT_DIR}/lib/python${PYTHON_VERSION}/site-packages/setuptools/site-patch.py ]; then
379 cp ${PYTHON_ROOT_DIR}/lib/python${PYTHON_VERSION}/site-packages/setuptools/site-patch.py ${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages/site.py
381 echo "ERROR: could not find site-patch.py"
386 cd ${PRODUCT_INSTALL}/lib
387 # On some nodes, the link to OT is not done properly.
388 if [[ ! -f libOT.so.0 ]]; then
389 echo "INFO: Fixing libOT.so"
390 ln -sf libOT.so.0.19.0 libOT.so.0.19
391 ln -sf libOT.so.0.19 libOT.so.0
392 ln -sf libOT.so.0 libOT.so
396 echo "########## END"