products/compil_scripts/openturns-1.17.sh

   1 #!/bin/bash
   2
   3 echo "##########################################################################"
   4 echo "openturns" $VERSION
   5 echo "##########################################################################"
   6
   7 # we don't install in python directory -> modify environment as described in INSTALL file
   8 mkdir -p $PRODUCT_INSTALL/lib/python${PYTHON_VERSION:0:3}/site-packages
   9 export PATH=$(pwd)/bin:$PATH
  10 export PYTHONPATH=$(pwd):$PYTHONPATH
  11 export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION:0:3}/site-packages:$PYTHONPATH
  12
  13 CMAKE_OPTIONS=""
  14 if [ -n "$SAT_HPC" ] && [ -n "$MPI_ROOT_DIR" ]; then
  15     echo "WARNING: setting CC and CXX environment variables and target MPI wrapper"
  16     CMAKE_OPTIONS+=" -DCMAKE_CXX_COMPILER:STRING=${MPI_CXX_COMPILER}"
  17     CMAKE_OPTIONS+=" -DCMAKE_C_COMPILER:STRING=${MPI_C_COMPILER}"
  18 fi
  19
  20 CMAKE_OPTIONS+=" -DCMAKE_INSTALL_PREFIX:STRING=${PRODUCT_INSTALL}"
  21 CMAKE_OPTIONS+=" -DCMAKE_BUILD_TYPE:STRING=Release"
  22 CMAKE_OPTIONS+=" -DPYTHON_EXECUTABLE=${PYTHONBIN}"
  23 CMAKE_OPTIONS+=" -DSWIG_EXECUTABLE=${SWIG_ROOT_DIR}/bin/swig"
  24
  25 if [ -n "$TBB_ROOT_DIR" ] && [ "${TBB_ROOT_DIR}" != "/usr" ]; then
  26     CMAKE_OPTIONS+=" -DTBB_ROOT_DIR=${TBB_ROOT_DIR}"
  27 fi
  28
  29 ### libxml2 settings
  30 if [ -n "$LIBXML2_ROOT_DIR" ] && [ "${LIBXML2_ROOT_DIR}" != "/usr" ]; then
  31     CMAKE_OPTIONS+=" -DLIBXML2_INCLUDE_DIR:STRING=${LIBXML2_ROOT_DIR}/include/libxml2"
  32     CMAKE_OPTIONS+=" -DLIBXML2_LIBRARIES:STRING=${LIBXML2_ROOT_DIR}/lib/libxml2.so"
  33     CMAKE_OPTIONS+=" -DLIBXML2_XMLLINT_EXECUTABLE=${LIBXML2_ROOT_DIR}/bin/xmllint"
  34 fi
  35
  36 # HDF5
  37 if [ -n "$HDF5_ROOT_DIR" ] && [ "${HDF5_ROOT_DIR}" != "/usr" ]; then
  38     CMAKE_OPTIONS+=" -DHDF5_DIR:PATH=${HDF5_ROOT_DIR}/share/cmake/hdf5"
  39     CMAKE_OPTIONS+=" -DHDF5_USE_STATIC_LIBRARIES:BOOL=OFF"
  40     CMAKE_OPTIONS+=" -DHDF5_ROOT:PATH=${HDF5_ROOT_DIR}"
  41     CMAKE_OPTIONS+=" -DHDF5_hdf5_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib"
  42     CMAKE_OPTIONS+=" -DHDF5_hdf5_hl_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib/libhdf5_hl.so"
  43     CMAKE_OPTIONS+=" -DHDF5_HL_LIBRARY=${HDF5_ROOT_DIR}/lib/libhdf5_hl.so"
  44     CMAKE_OPTIONS+=" -DHDF5_C_INCLUDE_DIR=${HDF5_ROOT_DIR}/include"
  45 fi
  46
  47 # CMINPACK
  48 if [ -n "$CMINPACK_ROOT_DIR" ] && [ "${CMINPACK_ROOT_DIR}" != "/usr" ]; then
  49     CMAKE_OPTIONS+=" -DCMINPACK_ROOT_DIR=${CMINPACK_ROOT_DIR}"
  50     CMAKE_OPTIONS+=" -DCMINPACK_INCLUDE_DIR=${CMINPACK_ROOT_DIR}/include/cminpack-1"
  51     CMAKE_OPTIONS+=" -DCMINPACK_LIBRARY=$CMINPACK_ROOT_DIR/lib/libcminpack_s.a"
  52 else
  53     CMAKE_OPTIONS+=" -DCMINPACK_ROOT_DIR=${CMINPACK_ROOT_DIR}"
  54     CMAKE_OPTIONS+=" -DCMINPACK_INCLUDE_DIR=${CMINPACK_ROOT_DIR}/include/cminpack-1"
  55 fi
  56
  57 # Blas/Lapack
  58 if [ -n "$LAPACK_ROOT_DIR" ] && [ "${LAPACK_ROOT_DIR}" != "/" ]; then
  59     CMAKE_OPTIONS+=" -DLAPACK_DIR=${LAPACK_ROOT_DIR}/lib/cmake/lapack-3.8.0"
  60     CMAKE_OPTIONS+=" -DCBLAS_DIR=${LAPACK_ROOT_DIR}/lib/cmake/cblas-3.8.0"
  61     CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libcblas.so"
  62     CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libblas.so"
  63 fi
  64
  65 if [[ $DIST_NAME == "CO" && $DIST_VERSION == "8" && $APPLICATION_NAME =~ native && -f /usr/lib64/libcblas.so && -f /usr/lib64/libblas.so ]]; then
  66     CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=/usr/lib64/libcblas.so"
  67     CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=/usr/lib64/libblas.so"
  68 fi
  69
  70 ### libxml2 settings
  71 if [ -n "$LIBXML2_ROOT_DIR" ] && [ "${LIBXML2_ROOT_DIR}" != "/usr" ]; then
  72     CMAKE_OPTIONS+=" -DLIBXML2_INCLUDE_DIR:STRING=${LIBXML2_ROOT_DIR}/include/libxml2"
  73     CMAKE_OPTIONS+=" -DLIBXML2_LIBRARIES:STRING=${LIBXML2_ROOT_DIR}/lib/libxml2.so"
  74     CMAKE_OPTIONS+=" -DLIBXML2_XMLLINT_EXECUTABLE=${LIBXML2_ROOT_DIR}/bin/xmllint"
  75 fi
  76
  77 ## nlopt
  78 if [ -n "$NLOPT_ROOT_DIR" ] && [ "${NLOPT_ROOT_DIR}" != "/usr" ]; then
  79     CMAKE_OPTIONS+=" -DNLOPT_INCLUDE_DIRS:STRING=${NLOPT_ROOT_DIR}/include"
  80     CMAKE_OPTIONS+=" -DNLOPT_LIBRARIES:STRING=${NLOPT_ROOT_DIR}/lib"
  81     CMAKE_OPTIONS+=" -DNLOPT_DIR:STRING=${NLOPT_ROOT_DIR}"
  82 fi
  83
  84 echo
  85 echo "*** cmake" $CMAKE_OPTIONS
  86 mkdir -p $BUILD_DIR/openturns
  87 cd  $BUILD_DIR/openturns
  88 cmake $CMAKE_OPTIONS $SOURCE_DIR/openturns-1.17
  89 if [ $? -ne 0 ]
  90 then
  91     echo "ERROR on cmake"
  92     exit 1
  93 fi
  94
  95 echo
  96 echo "*** make" $MAKE_OPTIONS
  97 make $MAKE_OPTIONS
  98 if [ $? -ne 0 ]
  99 then
 100     echo "ERROR on make"
 101     exit 2
 102 fi
 103
 104 echo
 105 echo "*** make install"
 106 make install
 107 if [ $? -ne 0 ]
 108 then
 109     echo "ERROR on make install"
 110     exit 3
 111 fi
 112
 113 echo
 114 echo "*** check installation"
 115
 116 if [ -d "${PRODUCT_INSTALL}/lib64" ]
 117 then
 118     mv ${PRODUCT_INSTALL}/lib64/* ${PRODUCT_INSTALL}/lib
 119     rmdir ${PRODUCT_INSTALL}/lib64
 120 fi
 121
 122 export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages:${PYTHONPATH}
 123 export LD_LIBRARY_PATH=${PRODUCT_INSTALL}/lib:${LD_LIBRARY_PATH}
 124 chmod +x ${SOURCE_DIR}/openturns-1.17/python/test/t_features.py
 125 ${SOURCE_DIR}/openturns-1.17/python/test/t_features.py
 126 if [ $? -ne 0 ]
 127 then
 128     echo "ERROR  testing Openturns features...."
 129     exit 4
 130 fi
 131
 132 LD_LIBRARY_PATH_REF=${LD_LIBRARY_PATH}
 133 if [[ -d "$SOURCE_DIR/otfftw-0.11" ]]; then
 134
 135     declare -A OTC
 136     OTC["otagrum"]="0.4"
 137     OTC["otfftw"]="0.11"
 138     OTC["otmixmod"]="0.12"
 139     OTC["otmorris"]="0.10"
 140     OTC["otpmml"]="1.11"
 141     OTC["otrobopt"]="0.9"
 142     OTC["otsubsetinverse"]="1.8"
 143     OTC["otsvm"]="0.10"
 144
 145     for k in ${!OTC[@]};
 146     do
 147         echo
 148         echo "*** C O M P O N E N T : $k-${OTC[$k]} "
 149         if [[ $k == "otagrum" ]]; then
 150             echo "WARNING: skipping $k.."
 151             continue
 152         fi
 153         cd  $BUILD_DIR
 154         mkdir ${BUILD_DIR}/$k
 155         cd ${BUILD_DIR}/$k
 156         CMAKE_EXTRA_OPTIONS=
 157         if [[ $DIST_NAME == "CO" ]]; then
 158             CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"  # needs extra latex modules on CentOS 7, 8
 159             CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF"
 160         fi
 161         if [[ $k == "otmixmod" ]]; then
 162             CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
 163             CMAKE_EXTRA_OPTIONS+=" -DSOURCEFILES=$SOURCE_DIR/$k-${OTC[$k]}"
 164         elif [[ $k == "otsubsetinverse" ]]; then
 165             CMAKE_EXTRA_OPTIONS+=" -DOPENTURNS_HOME=$PRODUCT_INSTALL"
 166             CMAKE_EXTRA_OPTIONS+=" -DCMAKE_SKIP_INSTALL_RPATH:BOOL=ON"
 167             CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF"
 168         elif  [[ $k == "otfftw" ]]; then
 169             CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
 170         elif  [[ $k == "otpmml" ]]; then
 171             CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
 172         fi
 173
 174         echo
 175         echo "*** cmake " $CMAKE_OPTIONS ${CMAKE_EXTRA_OPTIONS}  $SOURCE_DIR/$k-${OTC[$k]}
 176         cmake $CMAKE_OPTIONS ${CMAKE_EXTRA_OPTIONS} $SOURCE_DIR/$k-${OTC[$k]}
 177         if [ $? -ne 0 ]
 178         then
 179             echo "ERROR on cmake"
 180             exit 1
 181         fi
 182
 183         echo
 184         echo "*** make" $MAKE_OPTIONS
 185         make $MAKE_OPTIONS
 186         if [ $? -ne 0 ]
 187         then
 188             echo "ERROR on make"
 189             exit 2
 190         fi
 191
 192         echo
 193         echo "*** make install"
 194         make install
 195         if [ $? -ne 0 ]
 196         then
 197             echo "ERROR on make install"
 198             exit 3
 199         fi
 200     done
 201     declare -A OTP
 202     OTP["otfmi"]="0.11"
 203     OTP["otpod"]="0.6.7"
 204     OTP["otwrapy"]="0.10"
 205     for k in ${!OTP[@]};
 206     do
 207         echo
 208         echo "*** C O M P O N E N T : $k-${OTP[$k]} "
 209
 210         if [[ $DIST_NAME == "DB" && $DIST_VERSION == "10" && $APPLICATION_NAME =~ native && $k == "otfmi" ]]; then
 211             echo "INFO: install dill-0.3.4"
 212             ${PYTHONBIN} -m pip install $SOURCE_DIR/dill-0.3.4/dill-0.3.4-py2.py3-none-any.whl --no-deps  --prefix=$PRODUCT_INSTALL
 213             if [ $? -ne 0 ]
 214             then
 215                 echo "FATAL: could not install dill-0.3.4"
 216                 exit 6
 217             fi
 218         fi
 219         if [[ $DIST_NAME == "DB" && $DIST_VERSION == "10" && $APPLICATION_NAME =~ native && $k == "otpod" ]]; then
 220             echo "INFO: install scikit-learn-0.24.2"
 221             ${PYTHONBIN} -m pip install $SOURCE_DIR/scikit-learn-0.24.2/scikit-learn-0.24.2.tar.gz --no-deps  --prefix=$PRODUCT_INSTALL
 222             if [ $? -ne 0 ]
 223             then
 224                 echo "FATAL: could not install scikit-0.24.2"
 225                 exit 6
 226             fi
 227             echo "INFO: install threadpoolctl-3.0.0"
 228             ${PYTHONBIN} -m pip install $SOURCE_DIR/threadpoolctl-3.0.0/threadpoolctl-3.0.0-py3-none-any.whl --no-deps --prefix=$PRODUCT_INSTALL
 229             if [ $? -ne 0 ]
 230             then
 231                 echo "FATAL: could not install threadpoolctl 3.0.0"
 232                 exit 6
 233             fi
 234         fi
 235         if [[ $DIST_NAME == "CO" && $DIST_VERSION == "8" && $APPLICATION_NAME =~ native && $k == "otpod" ]]; then
 236             echo "*** skipping: since system Cython too old"
 237             continue
 238         fi
 239         # For non native builds install everything, since Python is embedded
 240         if [[ ! $APPLICATION_NAME =~ native ]]; then
 241             if [[ $k == "otfmi" ]]; then
 242                 echo "INFO: install dill-0.3.4"
 243                 ${PYTHONBIN} -m pip install $SOURCE_DIR/dill-0.3.4/dill-0.3.4-py2.py3-none-any.whl --no-deps
 244                 if [ $? -ne 0 ]
 245                 then
 246                     echo "FATAL: could not install dikk-0.3.4"
 247                     exit 5
 248                 fi
 249             elif [[ $k == "otpod" ]]; then
 250                 echo "INFO: install threadpoolctl-3.0.0"
 251                 ${PYTHONBIN} -m pip install $SOURCE_DIR/threadpoolctl-3.0.0/threadpoolctl-3.0.0-py3-none-any.whl --no-deps
 252                 if [ $? -ne 0 ]
 253                 then
 254                     echo "FATAL: could not install readpoolctl 3.0.0"
 255                     exit 6
 256                 fi
 257                 echo "INFO: install joblib-1.1.0"
 258                 ${PYTHONBIN} -m pip install $SOURCE_DIR/joblib-1.1.0/joblib-1.1.0-py2.py3-none-any.whl --no-deps
 259                 if [ $? -ne 0 ]
 260                 then
 261                     echo "FATAL: could not install joblib-1.1.0"
 262                     exit 6
 263                 fi
 264                 echo "INFO: install decorator-5.1.0"
 265                 ${PYTHONBIN} -m pip install $SOURCE_DIR/decorator-5.1.0/decorator-5.1.0-py3-none-any.whl --no-deps
 266                 if [ $? -ne 0 ]
 267                 then
 268                     echo "FATAL: could not install decorator-5.1.0"
 269                     exit 6
 270                 fi
 271                 echo "INFO: install scikit-learn-0.24.2"
 272                 ${PYTHONBIN} -m pip install $SOURCE_DIR/scikit-learn-0.24.2/scikit-learn-0.24.2.tar.gz --no-deps
 273                 if [ $? -ne 0 ]
 274                 then
 275                     echo "FATAL: could not install scikit-0.24.2"
 276                     exit 6
 277                 fi
 278             fi
 279         else
 280             if [[ $DIST_NAME == "FD" && $DIST_VERSION == "32" && $k == "otpod" ]]; then
 281                 echo "INFO: install scikit-learn-0.24.2"
 282                 ${PYTHONBIN} -m pip install $SOURCE_DIR/scikit-learn-0.24.2/scikit-learn-0.24.2.tar.gz --no-deps  --prefix=$PRODUCT_INSTALL
 283                 if [ $? -ne 0 ]
 284                 then
 285                     echo "FATAL: could not install scikit-0.24.2"
 286                     exit 6
 287                 fi
 288             fi
 289         fi
 290
 291         cd  $BUILD_DIR
 292         mkdir ${BUILD_DIR}/$k
 293         cd ${BUILD_DIR}/$k
 294         cp -R $SOURCE_DIR/$k-${OTP[$k]}/* .
 295         #
 296         $PYTHONBIN setup.py build
 297         if [ $? -ne 0 ]
 298         then
 299             echo "ERROR on ${PYTHONBIN} setup.py  build"
 300             exit 4
 301         fi
 302         #
 303         $PYTHONBIN setup.py install --prefix=$PRODUCT_INSTALL
 304         if [ $? -ne 0 ]
 305         then
 306             echo "ERROR on ${PYTHONBIN} setup.py  install --prefix=$PRODUCT_INSTALL"
 307             exit 5
 308         fi
 309     done
 310 fi
 311
 312 echo
 313 echo "########## END"