products/compil_scripts/openturns-1.17.sh

   1 #!/bin/bash
   2
   3 echo "##########################################################################"
   4 echo "openturns" $VERSION
   5 echo "##########################################################################"
   6
   7 # we don't install in python directory -> modify environment as described in INSTALL file
   8 mkdir -p $PRODUCT_INSTALL/lib/python${PYTHON_VERSION:0:3}/site-packages
   9 export PATH=$(pwd)/bin:$PATH
  10 export PYTHONPATH=$(pwd):$PYTHONPATH
  11 export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION:0:3}/site-packages:$PYTHONPATH
  12
  13 if [ -n "$MPI_ROOT_DIR" ]
  14 then
  15     echo "WARNING: setting CC and CXX environment variables and target MPI wrapper"
  16     export CC=${MPI_ROOT_DIR}/bin/mpicc
  17     export CXX=${MPI_ROOT_DIR}/bin/mpicxx
  18 fi
  19
  20 CMAKE_OPTIONS=""
  21 CMAKE_OPTIONS+=" -DCMAKE_INSTALL_PREFIX:STRING=${PRODUCT_INSTALL}"
  22 CMAKE_OPTIONS+=" -DCMAKE_BUILD_TYPE:STRING=Release"
  23 CMAKE_OPTIONS+=" -DPYTHON_EXECUTABLE=${PYTHONBIN}"
  24 CMAKE_OPTIONS+=" -DSWIG_EXECUTABLE=${SWIG_ROOT_DIR}/bin/swig"
  25
  26 if [ -n "$TBB_ROOT_DIR" ] && [ "${TBB_ROOT_DIR}" != "/usr" ]; then
  27     CMAKE_OPTIONS+=" -DTBB_ROOT_DIR=${TBB_ROOT_DIR}"
  28 fi
  29
  30 ### libxml2 settings
  31 if [ -n "$LIBXML2_ROOT_DIR" ] && [ "${LIBXML2_ROOT_DIR}" != "/usr" ]; then
  32     CMAKE_OPTIONS+=" -DLIBXML2_INCLUDE_DIR:STRING=${LIBXML2_ROOT_DIR}/include/libxml2"
  33     CMAKE_OPTIONS+=" -DLIBXML2_LIBRARIES:STRING=${LIBXML2_ROOT_DIR}/lib/libxml2.so"
  34     CMAKE_OPTIONS+=" -DLIBXML2_XMLLINT_EXECUTABLE=${LIBXML2_ROOT_DIR}/bin/xmllint"
  35 fi
  36
  37 # HDF5
  38 if [ -n "$HDF5_ROOT_DIR" ] && [ "${HDF5_ROOT_DIR}" != "/usr" ]; then
  39     CMAKE_OPTIONS+=" -DHDF5_DIR:PATH=${HDF5_ROOT_DIR}/share/cmake/hdf5"
  40     CMAKE_OPTIONS+=" -DHDF5_USE_STATIC_LIBRARIES:BOOL=OFF"
  41     CMAKE_OPTIONS+=" -DHDF5_ROOT:PATH=${HDF5_ROOT_DIR}"
  42     CMAKE_OPTIONS+=" -DHDF5_hdf5_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib"
  43     CMAKE_OPTIONS+=" -DHDF5_hdf5_hl_LIBRARY_RELEASE=${HDF5_ROOT_DIR}/lib/libhdf5_hl.so"
  44     CMAKE_OPTIONS+=" -DHDF5_HL_LIBRARY=${HDF5_ROOT_DIR}/lib/libhdf5_hl.so"
  45     CMAKE_OPTIONS+=" -DHDF5_C_INCLUDE_DIR=${HDF5_ROOT_DIR}/include"
  46 fi
  47
  48 # CMINPACK
  49 if [ -n "$CMINPACK_ROOT_DIR" ] && [ "${CMINPACK_ROOT_DIR}" != "/usr" ]; then
  50     CMAKE_OPTIONS+=" -DCMINPACK_ROOT_DIR=${CMINPACK_ROOT_DIR}"
  51     CMAKE_OPTIONS+=" -DCMINPACK_INCLUDE_DIR=${CMINPACK_ROOT_DIR}/include/cminpack-1"
  52     CMAKE_OPTIONS+=" -DCMINPACK_LIBRARY=$CMINPACK_ROOT_DIR/lib/libcminpack_s.a"
  53 else
  54     CMAKE_OPTIONS+=" -DCMINPACK_ROOT_DIR=${CMINPACK_ROOT_DIR}"
  55     CMAKE_OPTIONS+=" -DCMINPACK_INCLUDE_DIR=${CMINPACK_ROOT_DIR}/include/cminpack-1"
  56 fi
  57
  58 # Blas/Lapack
  59 if [ -n "$LAPACK_ROOT_DIR" ] && [ "${LAPACK_ROOT_DIR}" != "/" ]; then
  60     CMAKE_OPTIONS+=" -DLAPACK_DIR=${LAPACK_ROOT_DIR}/lib/cmake/lapack-3.8.0"
  61     CMAKE_OPTIONS+=" -DCBLAS_DIR=${LAPACK_ROOT_DIR}/lib/cmake/cblas-3.8.0"
  62     CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libcblas.so"
  63     CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=$LAPACK_ROOT_DIR/lib/libblas.so"
  64 fi
  65
  66 if [[ $DIST_NAME == "CO" && $DIST_VERSION == "8" && $APPLICATION_NAME =~ native && -f /usr/lib64/libcblas.so && -f /usr/lib64/libblas.so ]]; then
  67     CMAKE_OPTIONS+=" -DCBLAS_LIBRARIES=/usr/lib64/libcblas.so"
  68     CMAKE_OPTIONS+=" -DBLAS_LIBRARIES=/usr/lib64/libblas.so"
  69 fi
  70
  71 ### libxml2 settings
  72 if [ -n "$LIBXML2_ROOT_DIR" ] && [ "${LIBXML2_ROOT_DIR}" != "/usr" ]; then
  73     CMAKE_OPTIONS+=" -DLIBXML2_INCLUDE_DIR:STRING=${LIBXML2_ROOT_DIR}/include/libxml2"
  74     CMAKE_OPTIONS+=" -DLIBXML2_LIBRARIES:STRING=${LIBXML2_ROOT_DIR}/lib/libxml2.so"
  75     CMAKE_OPTIONS+=" -DLIBXML2_XMLLINT_EXECUTABLE=${LIBXML2_ROOT_DIR}/bin/xmllint"
  76 fi
  77
  78 ## nlopt
  79 if [ -n "$NLOPT_ROOT_DIR" ] && [ "${NLOPT_ROOT_DIR}" != "/usr" ]; then
  80     CMAKE_OPTIONS+=" -DNLOPT_INCLUDE_DIRS:STRING=${NLOPT_ROOT_DIR}/include"
  81     CMAKE_OPTIONS+=" -DNLOPT_LIBRARIES:STRING=${NLOPT_ROOT_DIR}/lib"
  82     CMAKE_OPTIONS+=" -DNLOPT_DIR:STRING=${NLOPT_ROOT_DIR}"
  83 fi
  84
  85 echo
  86 echo "*** cmake" $CMAKE_OPTIONS
  87 mkdir -p $BUILD_DIR/openturns
  88 cd  $BUILD_DIR/openturns
  89 cmake $CMAKE_OPTIONS $SOURCE_DIR/openturns-1.17
  90 if [ $? -ne 0 ]
  91 then
  92     echo "ERROR on cmake"
  93     exit 1
  94 fi
  95
  96 echo
  97 echo "*** make" $MAKE_OPTIONS
  98 make $MAKE_OPTIONS
  99 if [ $? -ne 0 ]
 100 then
 101     echo "ERROR on make"
 102     exit 2
 103 fi
 104
 105 echo
 106 echo "*** make install"
 107 make install
 108 if [ $? -ne 0 ]
 109 then
 110     echo "ERROR on make install"
 111     exit 3
 112 fi
 113
 114 echo
 115 echo "*** check installation"
 116
 117 if [ -d "${PRODUCT_INSTALL}/lib64" ]
 118 then
 119     mv ${PRODUCT_INSTALL}/lib64/* ${PRODUCT_INSTALL}/lib
 120     rmdir ${PRODUCT_INSTALL}/lib64
 121 fi
 122
 123 export PYTHONPATH=${PRODUCT_INSTALL}/lib/python${PYTHON_VERSION}/site-packages:${PYTHONPATH}
 124 export LD_LIBRARY_PATH=${PRODUCT_INSTALL}/lib:${LD_LIBRARY_PATH}
 125 chmod +x ${SOURCE_DIR}/openturns-1.17/python/test/t_features.py
 126 ${SOURCE_DIR}/openturns-1.17/python/test/t_features.py
 127 if [ $? -ne 0 ]
 128 then
 129     echo "ERROR  testing Openturns features...."
 130     exit 4
 131 fi
 132
 133 LD_LIBRARY_PATH_REF=${LD_LIBRARY_PATH}
 134 if [[ -d "$SOURCE_DIR/otfftw-0.11" ]]; then
 135
 136     declare -A OTC
 137     OTC["otagrum"]="0.4"
 138     OTC["otfftw"]="0.11"
 139     OTC["otmixmod"]="0.12"
 140     OTC["otmorris"]="0.10"
 141     OTC["otpmml"]="1.11"
 142     OTC["otrobopt"]="0.9"
 143     OTC["otsubsetinverse"]="1.8"
 144     OTC["otsvm"]="0.10"
 145
 146     for k in ${!OTC[@]};
 147     do
 148         echo
 149         echo "*** C O M P O N E N T : $k-${OTC[$k]} "
 150         if [[ $k == "otagrum" ]]; then
 151             echo "WARNING: skipping $k.."
 152             continue
 153         fi
 154
 155         cd  $BUILD_DIR
 156         mkdir ${BUILD_DIR}/$k
 157         cd ${BUILD_DIR}/$k
 158         CMAKE_EXTRA_OPTIONS=
 159         if [[ $k == "otmixmod" ]]; then
 160             CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"
 161             CMAKE_EXTRA_OPTIONS+=" -DSOURCEFILES=$SOURCE_DIR/$k-${OTC[$k]}"
 162         elif [[ $k == "otsubsetinverse" ]]; then
 163             CMAKE_EXTRA_OPTIONS+=" -DOPENTURNS_HOME=$PRODUCT_INSTALL"
 164             CMAKE_EXTRA_OPTIONS+=" -DCMAKE_SKIP_INSTALL_RPATH:BOOL=ON"
 165             CMAKE_EXTRA_OPTIONS+=" -DUSE_SPHINX=OFF"
 166         elif  [[ $k == "otfftw" ]]; then
 167             CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"  # needs extra latex modules on CentOS 7
 168         elif  [[ $k == "otpmml" ]]; then
 169             CMAKE_EXTRA_OPTIONS+=" -DBUILD_DOC=OFF"  # needs extra latex modules on CentOS 7
 170         fi
 171
 172         echo
 173         echo "*** cmake " $CMAKE_OPTIONS ${CMAKE_EXTRA_OPTIONS}  $SOURCE_DIR/$k-${OTC[$k]}
 174         cmake $CMAKE_OPTIONS ${CMAKE_EXTRA_OPTIONS} $SOURCE_DIR/$k-${OTC[$k]}
 175         if [ $? -ne 0 ]
 176         then
 177             echo "ERROR on cmake"
 178             exit 1
 179         fi
 180
 181         echo
 182         echo "*** make" $MAKE_OPTIONS
 183         make $MAKE_OPTIONS
 184         if [ $? -ne 0 ]
 185         then
 186             echo "ERROR on make"
 187             exit 2
 188         fi
 189
 190         echo
 191         echo "*** make install"
 192         make install
 193         if [ $? -ne 0 ]
 194         then
 195             echo "ERROR on make install"
 196             exit 3
 197         fi
 198     done
 199     declare -A OTP
 200     OTP["otfmi"]="0.11"
 201     OTP["otpod"]="0.6.7"
 202     OTP["otwrapy"]="0.10"
 203     for k in ${!OTP[@]};
 204     do
 205         echo
 206         echo "*** C O M P O N E N T : $k-${OTP[$k]} "
 207
 208         if [[ $DIST_NAME == "CO" && $DIST_VERSION == "8" && $APPLICATION_NAME =~ native && $k == "otpod" ]]; then
 209             echo "*** skipping: since system Cython too old"
 210             continue
 211         fi
 212         # For non native builds install everything, since Python is embedded
 213         if [[ ! $APPLICATION_NAME =~ native ]]; then
 214             if [[ $k == "otfmi" ]]; then
 215                 echo "INFO: install dill-0.3.4"
 216                 ${PYTHONBIN} -m pip install $SOURCE_DIR/dill-0.3.4/dill-0.3.4-py2.py3-none-any.whl --no-deps
 217                 if [ $? -ne 0 ]
 218                 then
 219                     echo "FATAL: could not install dikk-0.3.4"
 220                     exit 5
 221                 fi
 222             elif [[ $k == "otpod" ]]; then
 223                 echo "INFO: install threadpoolctl-3.0.0"
 224                 ${PYTHONBIN} -m pip install $SOURCE_DIR/threadpoolctl-3.0.0/threadpoolctl-3.0.0-py3-none-any.whl --no-deps
 225                 if [ $? -ne 0 ]
 226                 then
 227                     echo "FATAL: could not install readpoolctl 3.0.0"
 228                     exit 6
 229                 fi
 230                 echo "INFO: install joblib-1.1.0"
 231                 ${PYTHONBIN} -m pip install $SOURCE_DIR/joblib-1.1.0/joblib-1.1.0-py2.py3-none-any.whl --no-deps
 232                 if [ $? -ne 0 ]
 233                 then
 234                     echo "FATAL: could not install joblib-1.1.0"
 235                     exit 6
 236                 fi
 237                 echo "INFO: install decorator-5.1.0"
 238                 ${PYTHONBIN} -m pip install $SOURCE_DIR/decorator-5.1.0/decorator-5.1.0-py3-none-any.whl --no-deps
 239                 if [ $? -ne 0 ]
 240                 then
 241                     echo "FATAL: could not install decorator-5.1.0"
 242                     exit 6
 243                 fi
 244                 echo "INFO: install scikit-learn-0.24.2"
 245                 ${PYTHONBIN} -m pip install $SOURCE_DIR/scikit-learn-0.24.2/scikit-learn-0.24.2.tar.gz --no-deps
 246                 if [ $? -ne 0 ]
 247                 then
 248                     echo "FATAL: could not install scikit-0.24.2"
 249                     exit 6
 250                 fi
 251             fi
 252         fi
 253
 254         cd  $BUILD_DIR
 255         mkdir ${BUILD_DIR}/$k
 256         cd ${BUILD_DIR}/$k
 257         cp -R $SOURCE_DIR/$k-${OTP[$k]}/* .
 258         #
 259         $PYTHONBIN setup.py build
 260         if [ $? -ne 0 ]
 261         then
 262             echo "ERROR on ${PYTHONBIN} setup.py  build"
 263             exit 4
 264         fi
 265         #
 266         $PYTHONBIN setup.py install --prefix=$PRODUCT_INSTALL
 267         if [ $? -ne 0 ]
 268         then
 269             echo "ERROR on ${PYTHONBIN} setup.py  install --prefix=$PRODUCT_INSTALL"
 270             exit 5
 271         fi
 272     done
 273 fi
 274
 275 echo
 276 echo "########## END"