--- /dev/null
+// Copyright (C) 2007-2013 CEA/DEN, EDF R&D
+//
+// This library is free software; you can redistribute it and/or
+// modify it under the terms of the GNU Lesser General Public
+// License as published by the Free Software Foundation; either
+// version 2.1 of the License.
+//
+// This library is distributed in the hope that it will be useful,
+// but WITHOUT ANY WARRANTY; without even the implied warranty of
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+// Lesser General Public License for more details.
+//
+// You should have received a copy of the GNU Lesser General Public
+// License along with this library; if not, write to the Free Software
+// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+//
+// See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
+//
+
+// ---
+// File : tetrahpc2med.cxx
+// Author : Christian VAN WAMBEKE (CEA)
+// ---
+//
+/*
+** prog principal de ghs3dprl
+*/
+
+#include <stdio.h> /* printf clrscr fopen fread fwrite fclose */
+#include <string>
+#include <cstring>
+#include <cstdlib>
+#include <iostream>
+#include <sstream>
+#include <fstream>
+#include <vector>
+#ifndef WIN32
+#include <unistd.h>
+#endif
+
+#include <qstring.h>
+
+#include <QXmlSimpleReader>
+#include <QXmlInputSource>
+#include <QApplication>
+
+#include "ghs3dprl_msg_parser.h"
+#include "dlg_ghs3dmain.h"
+
+#ifdef WIN32
+#include <io.h>
+#include <windows.h>
+#define F_OK 0
+#endif
+
+//#include "MEDMEM_Exception.hxx"
+//#include "MEDMEM_define.hxx"
+
+extern "C" {
+#include <med.h>
+//#include <med_config.h>
+//#include <med_utils.h>
+//#include <med_misc.h>
+}
+
+//************************************
+med_idt ouvre_fichier_MED(char *fichier,int verbose)
+{
+ med_idt fid = 0;
+ med_err ret = 0;
+ med_int majeur,mineur,release;
+
+ /* on regarde si le fichier existe */
+ ret = (int) access(fichier,F_OK);
+ if (ret < 0) return fid;
+
+ /* on regarde s'il s'agit d'un fichier au format HDF5 */
+ med_bool hdfok,medok;
+ ret = MEDfileCompatibility(fichier,&hdfok,&medok);
+ if (ret < 0){
+ std::cerr<<"File "<<fichier<<" not MED or HDF V5 formatted\n";
+ return fid;
+ }
+
+ /* Quelle version de MED est utilise par mdump ? */
+ MEDlibraryNumVersion(&majeur,&mineur,&release);
+ if (verbose>0)fprintf(stdout,"\nReading %s with MED V%d.%d.%d",
+ fichier,majeur,mineur,release);
+
+ /* Ouverture du fichier MED en lecture seule */
+ fid = MEDfileOpen(fichier,MED_ACC_RDONLY);
+ if (ret < 0) return fid;
+
+ MEDfileNumVersionRd(fid, &majeur, &mineur, &release);
+ if (majeur < 2 || majeur == 2 && mineur < 2) {
+ fprintf(stderr,"File %s from MED V%d.%d.%d not assumed\n",
+ fichier,majeur,mineur,release);
+ //" version est ant�ieure �la version 2.2";
+ ret = MEDfileClose(fid);
+ fid=0; }
+ else {
+ if (verbose>0)fprintf(stdout,", file from MED V%d.%d.%d\n",majeur,mineur,release); }
+
+ return fid;
+}
+
+//************************************
+bool ReadFileMED(QString nomfilemed,ghs3dprl_mesh_wrap *mymailw)
+{
+ med_err ret;
+ med_idt fid=0;
+ med_int i,j,sdim,mdim,nmaa,edim,majeur_lu,mineur_lu,release_lu,nprofils,nstep;
+ med_mesh_type type_maillage;
+ char dtunit[MED_SNAME_SIZE+1];
+ char axisname[MED_SNAME_SIZE+1];
+ char axisunit[MED_SNAME_SIZE*3+1];
+ med_sorting_type sortingtype;
+ med_axis_type axistype;
+ int numero=1;
+ QString key,tmp;
+ med_bool chan;
+ med_bool tran;
+
+ //version qt3
+ char* chaine = (char*)malloc((nomfilemed.length()+1)*sizeof(char));
+ strncpy(chaine,nomfilemed.toLatin1().constData(),nomfilemed.length()+1);
+ //std::cout<<"*** ReadFileMED *** "<<chaine<<"\n";
+
+ fid=ouvre_fichier_MED(chaine,mymailw->verbose);
+ free(chaine);
+ if (fid == 0) {
+ std::cerr<<"Problem opening file "<<nomfilemed.toLatin1().constData()<<"\n";
+ return false;
+ }
+
+ nmaa = MEDnMesh(fid);
+ if (nmaa <= 0){
+ std::cerr<<"No meshes in "<<nomfilemed.toLatin1().constData()<<"\n";
+ ret = MEDfileClose(fid);
+ return false;
+ }
+ if (nmaa > 1) std::cout<<"More than one mesh in "<<nomfilemed.toLatin1().constData()<<", first one taken\n";
+ ret = MEDmeshInfo(fid,numero,mymailw->nommaa,&sdim,&mdim,&type_maillage,mymailw->maillage_description,
+ dtunit,&sortingtype,&nstep,&axistype,axisname,axisunit);
+ if (ret < 0){
+ std::cerr<<"Problem MEDmeshInfo in "<<nomfilemed.toLatin1().constData()<<"\n";
+ ret = MEDfileClose(fid);
+ return false;
+ }
+ //changed with version med: a triangles mesh in 3d is dim 2 now and 3 before 2014
+ if (mdim != 2 && mdim != 3){
+ std::cerr<<"Problem mesh dimension should be 2 or 3: "<<mdim<<"\n";
+ ret = MEDfileClose(fid);
+ return false;
+ }
+ if (sdim != 3){
+ std::cerr<<"Problem space dimension should be 3: "<<sdim<<"\n";
+ ret = MEDfileClose(fid);
+ return false;
+ }
+ if (type_maillage != MED_UNSTRUCTURED_MESH){
+ std::cerr<<"Problem type mesh should be MED_NON_STRUCTURE: "<<type_maillage<<std::endl;
+ ret = MEDfileClose(fid);
+ return false;
+ }
+
+ //lecture nb de noeuds
+ //cf med-3.0.0_install/share/doc/html/maillage_utilisateur.html
+ med_int nnoe=MEDmeshnEntity(fid,mymailw->nommaa,MED_NO_DT,MED_NO_IT,
+ MED_NODE,MED_NO_GEOTYPE,MED_COORDINATE,MED_NO_CMODE,&chan,&tran);
+ //(med_geometrie_element)0,(med_connectivite)0);
+ if (nnoe<1){
+ std::cerr<<"Problem number of Vertices < 1\n";
+ ret = MEDfileClose(fid);
+ return false;
+ }
+
+ //nombre d'objets MED : mailles, faces, aretes , ...
+ med_int nmailles[MED_N_CELL_GEO],nbtria3;
+ med_int nfaces[MED_N_FACE_GEO];
+ med_int naretes[MED_N_EDGE_FIXED_GEO],nbseg2;
+ //med_int nmailles[MED_NBR_GEOMETRIE_MAILLE],nbtria3;
+ //med_int nfaces[MED_NBR_GEOMETRIE_FACE];
+ //med_int naretes[MED_NBR_GEOMETRIE_ARETE],nbseg2;
+ //polygones et polyedres familles equivalences joints
+ med_int nmpolygones,npolyedres,nfpolygones,nfam,nequ,njnt;
+
+ //Combien de mailles, faces ou aretes pour chaque type geometrique ?
+ /*for (i=0;i<MED_NBR_GEOMETRIE_MAILLE;i++){
+ nmailles[i]=MEDnEntMaa(fid,mymailw->nommaa,MED_CONN,MED_MAILLE,typmai[i],typ_con);
+ //lecture_nombre_mailles_standards(fid,nommaa,typmai[i],typ_con,i);
+ if (mymailw->verbose>6) std::cout<<"NumberOf"<<nommai[i]<<"="<<nmailles[i]<<std::endl;
+ }*/
+
+ nbtria3=MEDmeshnEntity(fid,mymailw->nommaa,MED_NO_DT,MED_NO_IT,
+ MED_CELL,MED_TRIA3,MED_CONNECTIVITY,MED_NODAL,&chan,&tran);
+ nbseg2=MEDmeshnEntity(fid,mymailw->nommaa,MED_NO_DT,MED_NO_IT,
+ MED_CELL,MED_SEG2,MED_CONNECTIVITY,MED_NODAL,&chan,&tran);
+
+ //combien de familles ?
+ nfam=MEDnFamily(fid,mymailw->nommaa);
+ if (mymailw->verbose>2) {
+ std::cout<<"\nNumberOfFamilies="<<nfam<<std::endl;
+ std::cout<<"NumberOfVertices="<<nnoe<<std::endl;
+ std::cout<<"NumberOfMED_SEG2="<<nbseg2<<std::endl;
+ std::cout<<"NumberOfMED_TRIA3="<<nbtria3<<"\n\n";
+ }
+ if (nbtria3<3){
+ std::cerr<<"Problem number of MED_TRIA3 < 3, not a skin of a volume\n";
+ ret = MEDfileClose(fid);
+ return false;
+ }
+
+med_int ifamdelete=0,idelete;
+std::vector<med_int> famdelete = std::vector<med_int>(nfam);
+{
+ med_int ngro;
+ char *gro;
+ char nomfam[MED_NAME_SIZE+1];
+ med_int numfam;
+ char str1[MED_COMMENT_SIZE+1];
+ char str2[MED_LNAME_SIZE+1];
+ med_err ret = 0;
+
+ for (i=0;i<nfam;i++) famdelete[i]=0;
+ for (i=0;i<nfam;i++) {
+
+ //nombre de groupes
+ ngro = MEDnFamilyGroup(fid,mymailw->nommaa,i+1);
+ if (ngro < 0){
+ std::cerr<<"Problem reading number of groups of family\n";
+ continue;
+ }
+
+ //atributs obsolete MED3
+ //allocation memoire par exces
+ gro = (char*) malloc(MED_LNAME_SIZE*(ngro+1));
+
+ ret = MEDfamilyInfo(fid,mymailw->nommaa,i+1,nomfam,&numfam,gro);
+ if (ret < 0){
+ std::cerr<<"Problem reading informations of family\n";
+ continue;
+ }
+
+ if (mymailw->verbose>8) {
+ std::cout<<"Family "<<numfam<<" have "<<ngro<<" groups\n";
+ //affichage des resultats
+ for (j=0;j<ngro;j++) {
+ if (j==0) std::cout<<" Groups :\n";
+ strncpy(str2,gro+j*MED_LNAME_SIZE,MED_LNAME_SIZE);
+ str2[MED_LNAME_SIZE] = '\0';
+ fprintf(stdout," name = %s\n",str2);
+ }
+ if (i==nfam-1) std::cout<<std::endl;
+ }
+ QString sfam,sgro;
+ sfam=sfam.sprintf("%d",numfam);
+ idelete=0;
+ for (j=0;j<ngro;j++){
+ strncpy(str2,gro+j*MED_LNAME_SIZE,MED_LNAME_SIZE);
+ str2[MED_LNAME_SIZE]='\0';
+ sgro=str2;
+ if (sgro.contains(mymailw->deletegroups)>0) {
+ //std::cout<<"idelete++ "<<sgro<<std::endl;
+ idelete++;
+ }
+ }
+
+ if (idelete==ngro && ngro>0) { //only delete family whith all delete groups
+ //std::cout<<"famdelete++ "<<numfam<<" "<<ifamdelete<<" "<<ngro<<std::endl;
+ famdelete[ifamdelete]=numfam;
+ ifamdelete++;
+ }
+
+ else {
+ for (j=0;j<ngro;j++){
+ strncpy(str2,gro+j*MED_LNAME_SIZE,MED_LNAME_SIZE);
+ str2[MED_LNAME_SIZE]='\0';
+ sgro=str2;
+ QRegExp qgroup=QRegExp("Group_Of_All",Qt::CaseSensitive,QRegExp::RegExp);
+ if (sgro.contains(mymailw->deletegroups)==0){
+ if (sgro.contains(qgroup)>0) {
+ sgro="Skin_"+sgro; //pas sur que ce soit pertinent
+ }
+ if (mymailw->verbose>8) std::cout<<"families.add("<<sfam.toLatin1().constData()<<
+ ","<<sgro.toLatin1().constData()<<")\n";
+ mymailw->families.add(sfam,sgro);
+ }
+ else {
+ //sgro="Skin_"+sgro; //pas sur que ce soit pertinent
+ //std::cout<<"--deletegroups matches \""<<sfam<<","<<sgro<<"\"\n";
+ if (mymailw->verbose>3) std::cout<<"--deletegroups matches \""<<
+ sgro.toLatin1().constData()<<
+ "\" in family "<<numfam<<std::endl;
+ }
+ }
+ }
+
+ /*for (j=0;j<ngro;j++){
+ strncpy(str2,gro+j*MED_LNAME_SIZE,MED_LNAME_SIZE);
+ str2[MED_LNAME_SIZE]='\0';
+ sgro=str2;
+ //std::cout<<"families.add("<<sfam<<","<<sgro<<")\n";
+ if (sgro.contains(mymailw->deletegroups)==0){
+ //sgro="Skin_"+sgro; //pas sur que ce soit pertinent
+ std::cout<<"families.add("<<sfam<<","<<sgro<<")\n";
+ mymailw->families.add(sfam,sgro);
+ }
+ else {
+ std::cout<<"--deletegroups matches \""<<sgro<<"\"\n";
+ famdelete[ifamdelete]=numfam
+ ifamdelete++;
+ }
+ }*/
+
+ //on libere la memoire
+ free(gro);
+ }
+}
+
+//std::cout<<"famdelete"; for (j=0;j<ifamdelete;j++) std::cout<<" "<<famdelete[j]; std::cout<<std::endl;
+
+if (mymailw->verbose>3){
+ std::cout<<"\nFamiliesAndGroupsOf "<<nomfilemed.toLatin1().constData()<<std::endl;
+ mymailw->families.write();
+}
+ /* Allocations memoires */
+ /* table des coordonnees profil : (space dimension * nombre de noeuds ) */
+ med_float *coo=new med_float[nnoe*sdim];
+ /* table des numeros de familles des noeuds profil : (nombre de noeuds) */
+ med_int *famnodesskin=new med_int[nnoe];
+ //med_int *pfltab=new med_int[1]; //inutilise car on lit tout
+ //lecture des noeuds : coordonnees
+ ret=MEDmeshNodeCoordinateRd(fid,mymailw->nommaa,MED_NO_DT,MED_NO_IT,MED_FULL_INTERLACE,coo);
+ //mdim,coo,mode_coo,MED_ALL,pfltab,0,&rep,mymailw->nomcoo,mymailw->unicoo);
+ if (ret < 0){
+ std::cerr<<"Problem reading nodes\n";
+ ret = MEDfileClose(fid);
+ //return false;
+ }
+ ret=MEDmeshEntityFamilyNumberRd(fid,mymailw->nommaa,MED_NO_DT,MED_NO_IT,MED_NODE,MED_NONE,famnodesskin);
+ //famnodesskin,nnoe,MED_NOEUD,(med_geometrie_element) 0);
+ if (ret < 0){
+ std::cerr<<"Problem reading families of nodes\n";
+ ret = MEDfileClose(fid);
+ return false;
+ }
+ if (mymailw->verbose>9) {
+ std::cout<<"\nVertices: no x y z family\n";
+ for (i=0;i<nnoe*mdim;i=i+3) {
+ fprintf(stdout,"%5d %13.5e %13.5e %13.5e %5d \n",
+ (i/3+1), coo[i], coo[i+1], coo[i+2], famnodesskin[i/3]);
+ }
+ std::cout<<std::endl;
+ }
+
+ med_int *conn2=new med_int[nbseg2*2];
+ ret=MEDmeshElementConnectivityRd(fid,mymailw->nommaa,MED_NO_DT,MED_NO_IT,
+ MED_CELL,MED_SEG2,MED_NODAL,MED_FULL_INTERLACE,conn2);
+ //mdim,conn2,mode_coo,pfltab,0,MED_MAILLE,MED_SEG2,MED_NOD);
+ if (ret < 0){
+ std::cerr<<"Problem reading MED_SEG2\n";
+ ret = MEDfileClose(fid);
+ //return false;
+ }
+ med_int *famseg2skin=new med_int[nbseg2];
+ ret=MEDmeshEntityFamilyNumberRd(fid,mymailw->nommaa,MED_NO_DT,MED_NO_IT,MED_CELL,MED_SEG2,famseg2skin);
+ //MEDfamLire(fid,mymailw->nommaa,famseg2skin,nbseg2,MED_MAILLE,MED_SEG2);
+ if (ret < 0){
+ std::cerr<<"Problem reading families of MED_SEG2\n";
+ ret = MEDfileClose(fid);
+ return false;
+ }
+ if (mymailw->verbose>9) {
+ std::cout<<"\nConnectivity MED_SEG2: no node1 node2 family\n";
+ for (i=0;i<nbseg2*2;i=i+2) {
+ fprintf(stdout,"%5d %5d %5d %5d \n",
+ (i/2+1), conn2[i], conn2[i+1], famseg2skin[i/2]);
+ }
+ std::cout<<std::endl;
+ }
+ //std::cout<<"\ncvw1 conn nbtria3 "<<nbtria3<<"dt "<<MED_NO_DT<<"it "<<MED_NO_IT<<"cell "<<MED_CELL<<"tria3 "<<MED_TRIA3<<std::endl;
+ med_int *conn3=new med_int[nbtria3*3];
+ ret=MEDmeshElementConnectivityRd(fid,mymailw->nommaa,MED_NO_DT,MED_NO_IT,
+ MED_CELL,MED_TRIA3,MED_NODAL,MED_FULL_INTERLACE,conn3);
+ //MEDconnLire(fid,mymailw->nommaa,mdim,conn3,mode_coo,pfltab,0,MED_MAILLE,MED_TRIA3,MED_NOD);
+ if (ret < 0){
+ std::cerr<<"Problem reading MED_TRIA3\n";
+ ret = MEDfileClose(fid);
+ //return false;
+ }
+ med_int *famtria3skin=new med_int[nbtria3];
+ ret=MEDmeshEntityFamilyNumberRd(fid,mymailw->nommaa,MED_NO_DT,MED_NO_IT,MED_CELL,MED_TRIA3,famtria3skin);
+ //MEDfamLire(fid,mymailw->nommaa,famtria3skin,nbtria3,MED_MAILLE,MED_TRIA3);
+ if (ret < 0){
+ std::cerr<<"Problem reading families of MED_TRIA3\n";
+ ret = MEDfileClose(fid);
+ return false;
+ }
+ if (mymailw->verbose>9) {
+ std::cout<<"\nConnectivity MED_TRIA3: no node1 node2 node3 family\n";
+ for (i=0;i<nbtria3*3;i=i+3) {
+ fprintf(stdout,"%5d %5d %5d %5d %5d \n",
+ (i/3+1), conn3[i], conn3[i+1], conn3[i+2], famtria3skin[i/3]);
+ }
+ std::cout<<std::endl;
+ }
+
+ /*liberation memoire?
+ delete[] coo;
+ delete[] nomnoe;
+ delete[] numnoe;
+ delete[] nufano;*/
+
+ if (ifamdelete>0) {
+ //std::cout<<"!!!!!!!!nodes "<<famnodesskin[0]<<" "<<nnoe<<famdelete[1]<<std::endl;
+ for (i=0;i<nnoe;i++) {
+ for (j=0;j<ifamdelete;j++) {
+ if (famnodesskin[i]==famdelete[j]) {
+ //std::cout<<"nodes "<<famnodesskin[i]<<" "<<i<<" "<<famdelete[j]<<std::endl;
+ famnodesskin[i]=0; }
+ }
+ }
+ for (i=0;i<nbseg2;i++) {
+ for (j=0;j<ifamdelete;j++) {
+ if (famseg2skin[i]==famdelete[j]) famseg2skin[i]=0;
+ }
+ }
+ for (i=0;i<nbtria3;i++) {
+ for (j=0;j<ifamdelete;j++) {
+ if (famtria3skin[i]==famdelete[j]) famtria3skin[i]=0;
+ }
+ }
+ }
+ //stocks data for future use
+ CVWtab *montab;
+ bool ok;
+
+ montab=new CVWtab(nnoe*mdim,coo);
+ tmp="SKIN_VERTICES_COORDINATES";
+ ok=mymailw->insert_key(tmp,montab);
+
+ montab=new CVWtab(nnoe,famnodesskin);
+ tmp="SKIN_VERTICES_FAMILIES";
+ ok=mymailw->insert_key(tmp,montab);
+
+ montab=new CVWtab(nbseg2*2,conn2);
+ tmp="SKIN_SEG2_CONNECTIVITIES";
+ ok=mymailw->insert_key(tmp,montab);
+
+ montab=new CVWtab(nbtria3,famseg2skin);
+ tmp="SKIN_SEG2_FAMILIES";
+ ok=mymailw->insert_key(tmp,montab);
+
+ montab=new CVWtab(nbtria3*3,conn3);
+ tmp="SKIN_TRIA3_CONNECTIVITIES";
+ ok=mymailw->insert_key(tmp,montab);
+
+ montab=new CVWtab(nbtria3,famtria3skin);
+ tmp="SKIN_TRIA3_FAMILIES";
+ ok=mymailw->insert_key(tmp,montab);
+
+ //if (mymailw->verbose>6) ok=mymailw->list_keys_mesh_wrap();
+
+ ret = MEDfileClose(fid);
+ if (ret < 0){
+ std::cerr<<"Problem closing "<<nomfilemed.toLatin1().constData()<<"\n";
+ return false;
+ }
+ return true;
+}
+
+
+//************************************
+int main(int argc, char *argv[])
+{
+ bool ok;
+ int i,nb,nbfiles,limit_swap,nbelem_limit_swap,limit_swap_defaut,verbose;
+ QString path,pathini,casename,casenamemed,fileskinmed,
+ tmp,cmd,format,format_tetra,
+ test,menu,launchtetra,background,deletegroups,
+ ToMergeSubdomains,ToTagSubdomains,ToOutputInterfaces,ToDiscardSubdomains,
+ version="V3.0 (MED3+tetra-hpc)";
+
+ char *chelp=NULL,
+ *ccasename=NULL,
+ *cnumber=NULL,
+ *cmedname=NULL,
+ *climitswap=NULL,
+ *cverbose=NULL,
+ *ctest=NULL,
+ *cmenu=NULL,
+ *claunchtetra=NULL,
+ *cToMergeSubdomains=NULL,
+ *cToTagSubdomains=NULL,
+ *cToOutputInterfaces=NULL,
+ *cToDiscardSubdomains=NULL,
+ *cbackground=NULL,
+ *cdeletegroups=NULL;
+
+ for (i = 0; i < argc; i++){
+ if (!strncmp (argv[i], "--help", sizeof ("--help"))) chelp = &(argv[i][0]);
+ else if (!strncmp (argv[i], "--casename=", sizeof ("--casename"))) ccasename = &(argv[i][sizeof ("--casename")]);
+ else if (!strncmp (argv[i], "--number=", sizeof ("--number"))) cnumber = &(argv[i][sizeof ("--number")]);
+ else if (!strncmp (argv[i], "--medname=", sizeof ("--medname"))) cmedname = &(argv[i][sizeof ("--medname")]);
+ else if (!strncmp (argv[i], "--limitswap=", sizeof ("--limitswap"))) climitswap = &(argv[i][sizeof ("--limitswap")]);
+ else if (!strncmp (argv[i], "--verbose=", sizeof ("--verbose"))) cverbose = &(argv[i][sizeof ("--verbose")]);
+ else if (!strncmp (argv[i], "--test=", sizeof ("--test"))) ctest = &(argv[i][sizeof ("--test")]);
+ else if (!strncmp (argv[i], "--menu=", sizeof ("--menu"))) cmenu = &(argv[i][sizeof ("--menu")]);
+ else if (!strncmp (argv[i], "--launchtetra=", sizeof ("--launchtetra"))) claunchtetra = &(argv[i][sizeof ("--launchtetra")]);
+ else if (!strncmp (argv[i], "--merge_subdomains=", sizeof ("--merge_subdomains"))) cToMergeSubdomains = &(argv[i][sizeof ("--")]);
+ else if (!strncmp (argv[i], "--tag_subdomains=", sizeof ("--tag_subdomains"))) cToTagSubdomains = &(argv[i][sizeof ("--")]);
+ else if (!strncmp (argv[i], "--output_interfaces=", sizeof ("--output_interfaces"))) cToOutputInterfaces = &(argv[i][sizeof ("--")]);
+ else if (!strncmp (argv[i], "--discard_subdomains=", sizeof ("--discard_subdomains"))) cToDiscardSubdomains = &(argv[i][sizeof ("--")]);
+ else if (!strncmp (argv[i], "--background=", sizeof ("--background"))) cbackground = &(argv[i][sizeof ("--background")]);
+ else if (!strncmp (argv[i], "--deletegroups=", sizeof ("--deletegroups"))) cdeletegroups = &(argv[i][sizeof ("--deletegroups")]);
+ }
+
+ if (argc < 2 || chelp){
+ std::cout<<"tetrahpc2med "<<version.toLatin1().constData()<<" Available options:\n"
+ " --help : produces this help message\n"<<
+ " --casename : path and name of input tetrahpc2med files which are\n"<<
+ " - output files of GHS3DPRL_Plugin .mesh\n"<<
+ " - output file of GHS3DPRL_Plugin casename_skin.med (optional)\n"<<
+ " with initial skin and its initial groups\n"<<
+ " --number : number of partitions\n"<<
+ " --medname : path and name of output MED files\n"<<
+ " --limitswap : max size of working cpu memory (Mo) (before swapping on .temp files)\n"<<
+ " --verbose : trace of execution (0->6)\n"<<
+ " --test : more tests about joints, before generation of output files\n"<<
+ " --menu : a GUI menu for option number\n"<<
+ " --launchtetra : also launch tetra-hpc on files casename.mesh and option number\n"<<
+ " --merge_subdomains : merge the subdomains into one mesh and write the output .mesh(b) file\n"<<
+ " --tag_subdomains : use the parallel subdomain index as tag into the merged output mesh\n"<<
+ " to identify the parallel subdomains (used in combination with the merge_subdomains option)\n"<<
+ " --output_interfaces : write the parallel subdomains interface triangles into the merged output mesh\n"<<
+ " (used in combination with the merge_subdomains option)\n"<<
+ " --discard_subdomains : discard the parallel subdomains informations output (mesh, global numbering and interfaces)\n"<<
+ " --background : force background mode from launch tetra-hpc and generation of final MED files (big meshes)\n"<<
+ " --deletegroups : regular expression (see QRegExp) which matches unwanted groups in final MED files\n"<<
+ " (try --deletegroups=\"(\\bJOINT)\"\n"<<
+ " (try --deletegroups=\"(\\bAll_Nodes|\\bAll_Faces)\"\n"<<
+ " (try --deletegroups=\"((\\bAll_|\\bNew_)(N|F|T))\"\n";
+ std::cout<<"example:\n tetrahpcl2med --casename=/tmp/GHS3DPRL --number=2 --medname=DOMAIN "<<
+ "--limitswap=1000 --verbose=0 --test=yes --menu=no --launchtetra=no\n\n";
+ return 1; //no output files
+ }
+
+ if (!ccasename){
+ std::cerr<<"--casename: a path/name is expected\n\n";
+ return 1;
+ }
+ casename=ccasename;
+ if (!cnumber){
+ std::cerr<<"--number: an integer is expected\n\n";
+ return 1;
+ }
+ tmp=cnumber;
+ nbfiles=tmp.toLong(&ok,10);
+ if (!ok){
+ std::cerr<<"--number: an integer is expected\n\n";
+ return 1;
+ }
+ if (nbfiles<=0){
+ std::cerr<<"--number: a positive integer is expected\n\n";
+ return 1;
+ }
+ if (nbfiles>2048){ //delirium in 2014
+ std::cerr<<"--number: a positive integer <= 2048 is expected\n\n";
+ return 1;
+ }
+ if (!cmedname) cmedname=ccasename;
+ casenamemed=cmedname;
+ limit_swap_defaut=1000; //1000Mo
+ limit_swap=limit_swap_defaut;
+ if (climitswap){
+ tmp=climitswap;
+ limit_swap=tmp.toLong(&ok,10);
+ if (!ok){
+ std::cerr<<"--limitswap: an integer is expected. try 1000\n\n";
+ return 1;
+ }
+ if (limit_swap<1 || limit_swap>32000){
+ std::cerr<<"--limitswap: [1->32000] expected. try 1000\n\n";
+ return 1;
+ }
+ }
+ //default 1GOctet/8(for float)
+ nbelem_limit_swap=limit_swap*1000000; //100%
+ CVWtab::memorymax=nbelem_limit_swap;
+
+ verbose=1; //default
+ if (cverbose){
+ tmp=cverbose;
+ verbose=tmp.toLong(&ok,10);
+ if (!ok){
+ std::cerr<<"--verbose: an integer is expected\n\n";
+ return 1;
+ }
+ if (verbose<0){
+ std::cerr<<"--verbose: a positive integer is expected\n\n";
+ return 1;
+ }
+ }
+
+ test="no"; //default
+ if (ctest){
+ tmp=ctest;
+ if (tmp=="yes") test="yes";
+ }
+
+ menu="no"; //default
+ if (cmenu){
+ tmp=cmenu;
+ if (tmp=="yes") menu="yes";
+ }
+
+ launchtetra="no"; //default
+ if (claunchtetra){
+ tmp=claunchtetra;
+ if (tmp=="yes") launchtetra="yes";
+ }
+
+ ToMergeSubdomains="no"; //default
+ if (cToMergeSubdomains){
+ tmp=cToMergeSubdomains;
+ if (tmp=="yes") ToMergeSubdomains="yes";
+ }
+
+ ToTagSubdomains="no"; //default
+ if (cToTagSubdomains){
+ tmp=cToTagSubdomains;
+ if (tmp=="yes") ToTagSubdomains="yes";
+ }
+
+ ToOutputInterfaces="no"; //default
+ if (cToOutputInterfaces){
+ tmp=cToOutputInterfaces;
+ if (tmp=="yes") ToOutputInterfaces="yes";
+ }
+
+ ToDiscardSubdomains="no"; //default
+ if (cToDiscardSubdomains){
+ tmp=cToDiscardSubdomains;
+ if (tmp=="yes") ToDiscardSubdomains="yes";
+ }
+
+ background="no"; //default
+ if (cbackground){
+ tmp=cbackground;
+ if (tmp=="yes") background="yes";
+ }
+
+
+ // We must always have an application
+ if (menu=="yes") {
+ QApplication a(argc,argv);
+ dlg_ghs3dmain *m = new dlg_ghs3dmain();
+ m->setWindowTitle("tetrahpc2med 3.0");
+ m->show();
+ a.exec();
+ if ( m->result() == QDialog::Accepted ) {
+ std::cout<<"parameters "<<m->KeepFiles()<<" "<<m->NbPart()<<std::endl;
+ nbfiles=m->NbPart();
+ }
+ else {
+ return 1;
+ }
+ delete m;
+ }
+
+ int n=casenamemed.count('/');
+ if (n>0)
+ path=casenamemed.section('/',-n-1,-2)+"/";
+ else
+ path="./";
+ casenamemed=casenamemed.section('/',-1);
+ if (casenamemed.length()>20){
+ std::cerr<<"--medname truncated (no more 20 characters)"<<std::endl;
+ casenamemed.truncate(20);
+ }
+
+ n=casename.count('/');
+ if (n>0)
+ pathini=casename.section('/',-n-1,-2)+"/";
+ else
+ pathini="./";
+ casename=casename.section('/',-1);
+ if (casename.length()>20){
+ std::cerr<<"--casename truncated (no more 20 characters)"<<std::endl;
+ casename.truncate(20);
+ }
+
+ /*std::cout<<"CaseNameMed="<<casenamemed<<std::endl;
+ std::cout<<"PathMed="<<path<<std::endl;*/
+
+ deletegroups="(\\bxyz)"; //default improbable name
+ if (cdeletegroups){
+ deletegroups=cdeletegroups;
+ }
+
+ //verbose=5;
+ if (verbose>0)
+ std::cout<<"tetrahpc2med "<<version.toLatin1().constData()<<" parameters:"<<
+ "\n --casename="<<pathini.toLatin1().constData()<<casename.toLatin1().constData()<<
+ "\n --number="<<nbfiles<<
+ "\n --medname="<<path.toLatin1().constData()<<casenamemed.toLatin1().constData()<<
+ "\n --limitswap="<<limit_swap<<
+ "\n --verbose="<<verbose<<
+ "\n --test="<<test.toLatin1().constData()<<
+ "\n --menu="<<menu.toLatin1().constData()<<
+ "\n --launchtetra="<<launchtetra.toLatin1().constData()<<
+ "\n --merge_subdomains="<<ToMergeSubdomains.toLatin1().constData()<<
+ "\n --tag_subdomains="<<ToTagSubdomains.toLatin1().constData()<<
+ "\n --output_interfaces="<<ToOutputInterfaces.toLatin1().constData()<<
+ "\n --discard_subdomains="<<ToDiscardSubdomains.toLatin1().constData()<<
+ "\n --background="<<background.toLatin1().constData()<<
+ "\n --deletegroups=\""<<deletegroups.toLatin1().constData()<<"\"\n";
+
+ //utile si appel par plugin ghs3dprl sur big meshes et tetrahpc sur plusieurs jours
+#ifndef WIN32
+ if (background=="yes"){
+ pid_t pid = fork();
+ if (pid > 0) {
+ //Process father
+ exit(0); //temporary ok for plugin
+ }
+ //process children
+ //On rend le fils independant de tout terminal
+ //from here everything in background: tetrahpc AND generation of final MED files
+ setsid();
+ system("sleep 10"); //for debug
+ }
+#else
+ printf("background mode is not supported on win32 platform !\n");
+#endif
+
+ //"tetrahpc -f exemple1 -n 4"
+ if (launchtetra=="yes"){
+ //tetra_hpc.exe --help
+ //mpirun -n 3 mg-tetra_hpc.exe --in GHS3DPRL.mesh --out TOTO.mesh
+
+ //direct mpirun cause problem: invalid
+ //cmd="mpirun -n "+cmd.sprintf("%d",nbfiles)+" mg-tetra_hpc.exe --in "+
+
+ //call tetra_hpc.bash is script which assumes mpirun after compilation openmpi etc...
+ cmd="mg-tetra_hpc.bash -n "+cmd.sprintf("%d",nbfiles)+" --in "+
+ pathini+casename+".mesh --out "+
+ pathini+casename+".mesh"+
+ " --merge_subdomains "+ToMergeSubdomains+
+ " --tag_subdomains "+ToTagSubdomains+
+ " --output_interfaces "+ToOutputInterfaces+
+ " --discard_subdomains "+ToDiscardSubdomains+
+ " > "+path+"tetrahpc.log";
+ std::cout<<"\nlaunchtetra command: background="<<cbackground<<
+ "\n "<<cmd.toLatin1().constData()<<std::endl;
+ system(cmd.toLatin1().constData()); // run
+ //sometimes it is better to wait flushing files on slow filesystem...
+ system("sleep 3");
+ }
+ ghs3dprl_mesh_wrap *mymailw=new ghs3dprl_mesh_wrap;
+ //no constructor, later maybe
+ mymailw->nbfiles=0;
+ mymailw->nbfilestot=nbfiles;
+ //for huge cases big array swap in huge binary files
+ mymailw->nbelem_limit_swap=nbelem_limit_swap;
+ mymailw->verbose=verbose;
+ mymailw->casename=casename;
+ mymailw->medname=casenamemed;
+ mymailw->path=path;
+ mymailw->pathini=pathini;
+ mymailw->deletegroups=QRegExp(deletegroups,Qt::CaseSensitive,QRegExp::RegExp);
+ ghs3dprl_msg_parser handler;
+ //constructor later maybe
+ //handler.verbose=true;
+ handler.mailw=mymailw;
+ mymailw->families.no=1;
+ //std::cout<<"coucou1 "<<mymailw->families.no<<std::endl;
+ //mymailw->families.add(casename,casenamemed);
+ format=format.sprintf("%d",nbfiles);
+ int nbf=format.length();
+ format=format.sprintf(".%%0%dd.%%0%dd",nbf,nbf);
+ format_tetra=".%05d";
+ if (verbose>10)std::cout<<"format "<<format.toLatin1().constData()<<std::endl;
+ if (verbose>10)std::cout<<"format_tetra "<<format_tetra.toLatin1().constData()<<std::endl;
+ mymailw->format=format;
+ mymailw->format_tetra=format_tetra;
+ mymailw->for_tetrahpc=true; //to know what files to read: .noboite or .mesh
+
+ //something like "/home/wambeke/tmp/GHS3DPRL_skin.med"
+ fileskinmed=pathini+casename+"_skin.med";
+ //fileskinmed="/home/wambeke/tmp/GHS3DPRL_skin.med";
+ /*for debug
+ {
+ char ctmp[fileskinmed.length()+1] ; strcpy(ctmp,fileskinmed);
+ int res=dumpMED(&ctmp[0],1);
+ }*/
+ int ret = access(fileskinmed.toLatin1().constData(),F_OK); //on regarde si le fichier existe
+ if (ret >= 0) {
+ ok=ReadFileMED(fileskinmed,mymailw); }
+ else {
+ if (verbose>0)std::cout<<"Initial skin file <"<<fileskinmed.toLatin1().constData()<<"> does not exist\n"; }
+
+
+//if test quickly read all files before (or only small files)
+ if (test=="yes"){
+ if (verbose>0) std::cout<<"\nReading output files of tetrahpc as input files of tetrahpc2med...\n";
+ //only read beginning of files .xxxxx.mesh
+ //supposed big files big arrays so only see first lines
+ mymailw->nbfiles=0;
+ for (int i=1; i<=nbfiles; i++){
+ mymailw->nofile=i;
+ tmp=pathini+casename+tmp.sprintf(format_tetra.toLatin1().constData(),i)+".mesh";
+ if (verbose>0) std::cout<<"FileName="<<tmp.toLatin1().constData()<<std::endl;
+ ok=mymailw->TestExistingFileMESHnew(tmp);
+ }
+ if (verbose>0)
+ std::cout<<"NumberOfFilesMESHTested="<<mymailw->nbfiles<<": ok\n\n";
+ if (mymailw->nbfiles != nbfiles){
+ std::cerr<<"NumberOfFiles != NumberOfFilesTested is unexpected\n\n";
+ return 1;
+ }
+ } //end if test
+
+ ok=mymailw->Write_MEDfiles_v2(true); //deletekeys=true
+
+ nb=mymailw->remove_all_keys_mesh_wrap();
+ if (verbose>3)std::cout<<"***remove_all_key_mesh_wrap*** "<<nb<<" keys removed\n";
+ if (verbose>0)std::cout<<std::endl<<"===end of "<<argv[0]<<"==="<<std::endl;
+
+ //for debug
+ //int res=dumpMED("/home/wambeke/tmp/DOMAIN_1.med",1);
+
+ return 0; //ok
+}
