+++ /dev/null
-// Copyright (C) 2007-2012 CEA/DEN, EDF R&D, OPEN CASCADE
-//
-// Copyright (C) 2003-2007 OPEN CASCADE, EADS/CCR, LIP6, CEA/DEN,
-// CEDRAT, EDF R&D, LEG, PRINCIPIA R&D, BUREAU VERITAS
-//
-// This library is free software; you can redistribute it and/or
-// modify it under the terms of the GNU Lesser General Public
-// License as published by the Free Software Foundation; either
-// version 2.1 of the License.
-//
-// This library is distributed in the hope that it will be useful,
-// but WITHOUT ANY WARRANTY; without even the implied warranty of
-// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-// Lesser General Public License for more details.
-//
-// You should have received a copy of the GNU Lesser General Public
-// License along with this library; if not, write to the Free Software
-// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
-//
-// See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
-//
-/*
- * BatchManager_eSGE.cxx : emulation of SGE client
- *
- * Auteur : Bernard SECHER - CEA DEN
- * Mail : mailto:bernard.secher@cea.fr
- * Date : Thu Apr 24 10:17:22 2008
- * Projet : PAL Salome
- *
- */
-
-#include <stdlib.h>
-#include <string.h>
-
-#include <iostream>
-#include <fstream>
-#include <sstream>
-#include <sys/stat.h>
-
-#include <stdlib.h>
-#include <string.h>
-
-#ifdef WIN32
-#include <io.h>
-#else
-#include <libgen.h>
-#endif
-
-#include "Batch_Constants.hxx"
-#include "Batch_BatchManager_eSGE.hxx"
-#include "Batch_JobInfo_eSGE.hxx"
-
-using namespace std;
-
-namespace Batch {
-
- BatchManager_eSGE::BatchManager_eSGE(const FactBatchManager * parent, const char * host,
- const char * username,
- CommunicationProtocolType protocolType, const char * mpiImpl)
- : BatchManager(parent, host),
- BatchManager_eClient(parent, host, username, protocolType, mpiImpl)
- {
- // Nothing to do
- }
-
- // Destructeur
- BatchManager_eSGE::~BatchManager_eSGE()
- {
- // Nothing to do
- }
-
- // Methode pour le controle des jobs : soumet un job au gestionnaire
- const JobId BatchManager_eSGE::submitJob(const Job & job)
- {
- int status;
- Parametre params = job.getParametre();
- const std::string workDir = params[WORKDIR];
- const string fileToExecute = params[EXECUTABLE];
- string::size_type p1 = fileToExecute.find_last_of("/");
- string::size_type p2 = fileToExecute.find_last_of(".");
- std::string fileNameToExecute = fileToExecute.substr(p1+1,p2-p1-1);
-
- // export input files on cluster
- exportInputFiles(job);
-
- // build batch script for job
- buildBatchScript(job);
-
- // define name of log file (local)
- string logFile = generateTemporaryFileName("SGE-submitlog");
-
- // define command to submit batch
- string subCommand = string("bash -l -c \\\"cd ") + workDir + "; qsub " + fileNameToExecute + "_Batch.sh\\\"";
- string command = _protocol.getExecCommand(subCommand, _hostname, _username);
- command += " > ";
- command += logFile;
- command += " 2>&1";
- cerr << command.c_str() << endl;
- status = system(command.c_str());
- if(status)
- {
- ifstream error_message(logFile.c_str());
- std::string mess;
- std::string temp;
- while(std::getline(error_message, temp))
- mess += temp;
- error_message.close();
- throw EmulationException("Error of connection on remote host, error was: " + mess);
- }
-
- // read id of submitted job in log file
- char line[128];
- FILE *fp = fopen(logFile.c_str(),"r");
- fgets( line, 128, fp);
- fclose(fp);
-
- string strjob;
- istringstream iss(line);
- iss >> strjob >> strjob >> strjob;
-
- JobId id(this, strjob);
- return id;
- }
-
- // Ce manager permet de faire de la reprise
- const Batch::JobId
- BatchManager_eSGE::addJob(const Batch::Job & job, const std::string reference)
- {
- return JobId(this, reference);
- }
-
- // Methode pour le controle des jobs : retire un job du gestionnaire
- void BatchManager_eSGE::deleteJob(const JobId & jobid)
- {
- int status;
- int ref;
- istringstream iss(jobid.getReference());
- iss >> ref;
-
- // define command to delete batch
- string subCommand = string("bash -l -c \\\"qdel ") + iss.str() + string("\\\"");
- string command = _protocol.getExecCommand(subCommand, _hostname, _username);
- cerr << command.c_str() << endl;
- status = system(command.c_str());
- if(status)
- throw EmulationException("Error of connection on remote host");
-
- cerr << "jobId = " << ref << "killed" << endl;
- }
-
- // Methode pour le controle des jobs : suspend un job en file d'attente
- void BatchManager_eSGE::holdJob(const JobId & jobid)
- {
- throw EmulationException("Not yet implemented");
- }
-
- // Methode pour le controle des jobs : relache un job suspendu
- void BatchManager_eSGE::releaseJob(const JobId & jobid)
- {
- throw EmulationException("Not yet implemented");
- }
-
-
- // Methode pour le controle des jobs : modifie un job en file d'attente
- void BatchManager_eSGE::alterJob(const JobId & jobid, const Parametre & param, const Environnement & env)
- {
- throw EmulationException("Not yet implemented");
- }
-
- // Methode pour le controle des jobs : modifie un job en file d'attente
- void BatchManager_eSGE::alterJob(const JobId & jobid, const Parametre & param)
- {
- alterJob(jobid, param, Environnement());
- }
-
- // Methode pour le controle des jobs : modifie un job en file d'attente
- void BatchManager_eSGE::alterJob(const JobId & jobid, const Environnement & env)
- {
- alterJob(jobid, Parametre(), env);
- }
-
- // Methode pour le controle des jobs : renvoie l'etat du job
- JobInfo BatchManager_eSGE::queryJob(const JobId & jobid)
- {
- int id;
- istringstream iss(jobid.getReference());
- iss >> id;
-
- // define name of log file (local)
- string logFile = generateTemporaryFileName(string("SGE-querylog-id") + jobid.getReference());
-
- // define command to query batch
- string subCommand = string("bash -l -c \\\"qstat | grep ") + iss.str() + string("\\\"");
- string command = _protocol.getExecCommand(subCommand, _hostname, _username);
- command += " > ";
- command += logFile;
- cerr << command.c_str() << endl;
- int status = system(command.c_str());
- if (status && status != 256)
- throw EmulationException("Error of connection on remote host");
-
- JobInfo_eSGE ji = JobInfo_eSGE(id,logFile);
- return ji;
- }
-
- // Methode pour le controle des jobs : teste si un job est present en machine
- bool BatchManager_eSGE::isRunning(const JobId & jobid)
- {
- throw EmulationException("Not yet implemented");
- }
-
- void BatchManager_eSGE::buildBatchScript(const Job & job)
- {
-#ifndef WIN32
- //TODO porting on Win32 platform
- std::cerr << "BuildBatchScript" << std::endl;
- Parametre params = job.getParametre();
-
- // Job Parameters
- string workDir = "";
- string fileToExecute = "";
- int nbproc = 0;
- int edt = 0;
- int mem = 0;
- string queue = "";
-
- // Mandatory parameters
- if (params.find(WORKDIR) != params.end())
- workDir = params[WORKDIR].str();
- else
- throw EmulationException("params[WORKDIR] is not defined ! Please defined it, cannot submit this job");
- if (params.find(EXECUTABLE) != params.end())
- fileToExecute = params[EXECUTABLE].str();
- else
- throw EmulationException("params[EXECUTABLE] is not defined ! Please defined it, cannot submit this job");
-
- // Optional parameters
- if (params.find(NBPROC) != params.end())
- nbproc = params[NBPROC];
- if (params.find(MAXWALLTIME) != params.end())
- edt = params[MAXWALLTIME];
- if (params.find(MAXRAMSIZE) != params.end())
- mem = params[MAXRAMSIZE];
- if (params.find(QUEUE) != params.end())
- queue = params[QUEUE].str();
-
- string::size_type p1 = fileToExecute.find_last_of("/");
- string::size_type p2 = fileToExecute.find_last_of(".");
- string rootNameToExecute = fileToExecute.substr(p1+1,p2-p1-1);
- string fileNameToExecute = fileToExecute.substr(p1+1);
-
- // Create batch submit file
- ofstream tempOutputFile;
- std::string TmpFileName = createAndOpenTemporaryFile("SGE-script", tempOutputFile);
-
- tempOutputFile << "#! /bin/sh -f" << endl;
- if (queue != "")
- tempOutputFile << "#$ -q " << queue << endl;
- tempOutputFile << "#$ -pe " << _mpiImpl->name() << " " << nbproc << endl;
- if( edt > 0 )
- tempOutputFile << "#$ -l h_rt=" << getWallTime(edt) << endl ;
- if( mem > 0 )
- tempOutputFile << "#$ -l h_vmem=" << mem << "M" << endl ;
- tempOutputFile << "#$ -o " << workDir << "/logs/output.log." << rootNameToExecute << endl ;
- tempOutputFile << "#$ -e " << workDir << "/logs/error.log." << rootNameToExecute << endl ;
-
- // Abstraction of PBS_NODEFILE - TODO
- tempOutputFile << "export LIBBATCH_NODEFILE=$TMPDIR/machines" << endl;
-
- // Launch the executable
- tempOutputFile << "cd " << workDir << endl ;
- tempOutputFile << "./" + fileNameToExecute << endl;
- tempOutputFile.flush();
- tempOutputFile.close();
-
- BATCH_CHMOD(TmpFileName.c_str(), 0x1ED);
- cerr << "Batch script file generated is: " << TmpFileName.c_str() << endl;
-
- int status = _protocol.copyFile(TmpFileName, "", "",
- workDir + "/" + rootNameToExecute + "_Batch.sh",
- _hostname, _username);
- if (status)
- throw EmulationException("Error of connection on remote host");
-
-#endif //WIN32
- }
-
- std::string BatchManager_eSGE::getWallTime(const long edt)
- {
- long h, m;
- h = edt / 60;
- m = edt - h*60;
- ostringstream oss;
- if( m >= 10 )
- oss << h << ":" << m;
- else
- oss << h << ":0" << m;
- oss << ":00"; // the seconds
-
- return oss.str();
- }
-
-}
