--- /dev/null
+// Copyright (C) 2007-2012 CEA/DEN, EDF R&D, OPEN CASCADE
+//
+// Copyright (C) 2003-2007 OPEN CASCADE, EADS/CCR, LIP6, CEA/DEN,
+// CEDRAT, EDF R&D, LEG, PRINCIPIA R&D, BUREAU VERITAS
+//
+// This library is free software; you can redistribute it and/or
+// modify it under the terms of the GNU Lesser General Public
+// License as published by the Free Software Foundation; either
+// version 2.1 of the License.
+//
+// This library is distributed in the hope that it will be useful,
+// but WITHOUT ANY WARRANTY; without even the implied warranty of
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+// Lesser General Public License for more details.
+//
+// You should have received a copy of the GNU Lesser General Public
+// License along with this library; if not, write to the Free Software
+// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+//
+// See http://www.salome-platform.org/ or email : webmaster.salome@opencascade.com
+//
+/*
+ * BatchManager_LSF.cxx : emulation of LSF client
+ *
+ * Auteur : Bernard SECHER - CEA DEN
+ * Mail : mailto:bernard.secher@cea.fr
+ * Date : Thu Apr 24 10:17:22 2008
+ * Projet : PAL Salome
+ *
+ */
+
+#include <cstdlib>
+#include <fstream>
+#include <sstream>
+
+#include <Constants.hxx>
+#include <Utils.hxx>
+#include <NotYetImplementedException.hxx>
+#include "BatchManager_LSF.hxx"
+#include "JobInfo_LSF.hxx"
+#include "Log.hxx"
+
+using namespace std;
+
+namespace Batch {
+
+ BatchManager_LSF::BatchManager_LSF(const FactBatchManager * parent, const char * host,
+ const char * username,
+ CommunicationProtocolType protocolType, const char * mpiImpl)
+ : BatchManager(parent, host, username, protocolType, mpiImpl)
+ {
+ // Nothing to do
+ }
+
+ // Destructeur
+ BatchManager_LSF::~BatchManager_LSF()
+ {
+ // Nothing to do
+ }
+
+ // Methode pour le controle des jobs : soumet un job au gestionnaire
+ const JobId BatchManager_LSF::submitJob(const Job & job)
+ {
+ Parametre params = job.getParametre();
+ const std::string workDir = params[WORKDIR];
+
+ // export input files on cluster
+ LOG("Export des fichiers en entree");
+ exportInputFiles(job);
+
+ // build batch script for job
+ LOG("Construction du script de batch");
+ string scriptFile = buildSubmissionScript(job);
+ LOG("Script envoye");
+
+ // define command to submit batch
+ string subCommand = string("cd ") + workDir + "; bsub < " + scriptFile;
+ string command = _protocol.getExecCommand(subCommand, _hostname, _username);
+ command += " 2>&1";
+ LOG(command);
+
+ string output;
+ int status = Utils::getCommandOutput(command, output);
+ LOG(output);
+ if (status != 0) throw RunTimeException("Can't submit job, error was: " + output);
+
+ // read id of submitted job in output
+ int p10 = output.find("<");
+ int p20 = output.find(">");
+ string strjob = output.substr(p10+1,p20-p10-1);
+
+ JobId id(this, strjob);
+ return id;
+ }
+
+ // Methode pour le controle des jobs : retire un job du gestionnaire
+ void BatchManager_LSF::deleteJob(const JobId & jobid)
+ {
+ int status;
+ int ref;
+ istringstream iss(jobid.getReference());
+ iss >> ref;
+
+ // define command to delete batch
+ string subCommand = string("bkill ") + iss.str();
+ string command = _protocol.getExecCommand(subCommand, _hostname, _username);
+ LOG(command);
+ status = system(command.c_str());
+ if (status)
+ throw RunTimeException("Error of connection on remote host");
+
+ LOG("jobId = " << ref << "killed");
+ }
+
+ // Methode pour le controle des jobs : renvoie l'etat du job
+ JobInfo BatchManager_LSF::queryJob(const JobId & jobid)
+ {
+ int id;
+ istringstream iss(jobid.getReference());
+ iss >> id;
+
+ // define command to query batch
+ string subCommand = string("bjobs ") + iss.str();
+ string command = _protocol.getExecCommand(subCommand, _hostname, _username);
+ LOG(command);
+
+ string output;
+ int status = Utils::getCommandOutput(command, output);
+ if (status) throw RunTimeException("Error of connection on remote host");
+
+ JobInfo_LSF ji = JobInfo_LSF(id, output);
+ return ji;
+ }
+
+
+
+ // Methode pour le controle des jobs : teste si un job est present en machine
+ bool BatchManager_LSF::isRunning(const JobId & jobid)
+ {
+ throw NotYetImplementedException("BatchManager_LSF::isRunning");
+ }
+
+ std::string BatchManager_LSF::buildSubmissionScript(const Job & job)
+ {
+ Parametre params = job.getParametre();
+
+ // Job Parameters
+ string workDir = "";
+ string fileToExecute = "";
+ int nbproc = 0;
+ int edt = 0;
+ int mem = 0;
+ string queue = "";
+
+ // Mandatory parameters
+ if (params.find(WORKDIR) != params.end())
+ workDir = params[WORKDIR].str();
+ else
+ throw RunTimeException("params[WORKDIR] is not defined ! Please defined it, cannot submit this job");
+ if (params.find(EXECUTABLE) != params.end())
+ fileToExecute = params[EXECUTABLE].str();
+ else
+ throw RunTimeException("params[EXECUTABLE] is not defined ! Please defined it, cannot submit this job");
+
+ // Optional parameters
+ if (params.find(NBPROC) != params.end())
+ nbproc = params[NBPROC];
+ if (params.find(MAXWALLTIME) != params.end())
+ edt = params[MAXWALLTIME];
+ if (params.find(MAXRAMSIZE) != params.end())
+ mem = params[MAXRAMSIZE];
+ if (params.find(QUEUE) != params.end())
+ queue = params[QUEUE].str();
+
+ string::size_type p1 = fileToExecute.find_last_of("/");
+ string::size_type p2 = fileToExecute.find_last_of(".");
+ string rootNameToExecute = fileToExecute.substr(p1+1,p2-p1-1);
+ string fileNameToExecute = fileToExecute.substr(p1+1);
+
+ // Create batch submit file
+ ofstream tempOutputFile;
+ std::string TmpFileName = Utils::createAndOpenTemporaryFile("LSF-script", tempOutputFile);
+
+ tempOutputFile << "#! /bin/sh -f" << endl ;
+ if (params.find(NAME) != params.end())
+ tempOutputFile << "#BSUB -J " << params[NAME] << endl;
+ if (queue != "")
+ tempOutputFile << "#BSUB -q " << queue << endl;
+ if( edt > 0 )
+ tempOutputFile << "#BSUB -W " << getWallTime(edt) << endl ;
+ if( mem > 0 )
+ tempOutputFile << "#BSUB -M " << mem*1024 << endl ;
+ tempOutputFile << "#BSUB -n " << nbproc << endl ;
+
+ if (params.find(EXCLUSIVE) != params.end() && params[EXCLUSIVE]) {
+ tempOutputFile << "#BSUB -x" << endl ;
+ }
+
+ size_t pos = workDir.find("$HOME");
+ string baseDir;
+ if( pos != string::npos )
+ baseDir = getHomeDir(workDir) + workDir.substr(pos+5,workDir.length()-5);
+ else{
+ pos = workDir.find("~");
+ if( pos != string::npos )
+ baseDir = getHomeDir(workDir) + workDir.substr(pos+1,workDir.length()-1);
+ else
+ baseDir = workDir;
+ }
+ tempOutputFile << "#BSUB -o " << baseDir << "/logs/output.log." << rootNameToExecute << endl ;
+ tempOutputFile << "#BSUB -e " << baseDir << "/logs/error.log." << rootNameToExecute << endl ;
+
+ // Define environment for the job
+ Environnement env = job.getEnvironnement();
+ for (Environnement::const_iterator iter = env.begin() ; iter != env.end() ; ++iter) {
+ tempOutputFile << "export " << iter->first << "=" << iter->second << endl;
+ }
+
+ tempOutputFile << "cd " << workDir << endl ;
+
+ // generate nodes file
+ tempOutputFile << "LIBBATCH_NODEFILE=`mktemp nodefile-XXXXXXXXXX` || exit 1" << endl;
+ tempOutputFile << "bool=0" << endl;
+ tempOutputFile << "for i in $LSB_MCPU_HOSTS; do" << endl;
+ tempOutputFile << " if test $bool = 0; then" << endl;
+ tempOutputFile << " n=$i" << endl;
+ tempOutputFile << " bool=1" << endl;
+ tempOutputFile << " else" << endl;
+ tempOutputFile << " for ((j=0;j<$i;j++)); do" << endl;
+ tempOutputFile << " echo $n >> $LIBBATCH_NODEFILE" << endl;
+ tempOutputFile << " done" << endl;
+ tempOutputFile << " bool=0" << endl;
+ tempOutputFile << " fi" << endl;
+ tempOutputFile << "done" << endl;
+ tempOutputFile << "export LIBBATCH_NODEFILE" << endl;
+
+ // Launch the executable
+ tempOutputFile << "./" + fileNameToExecute;
+ if (params.find(ARGUMENTS) != params.end()) {
+ Versatile V = params[ARGUMENTS];
+ for(Versatile::const_iterator it=V.begin(); it!=V.end(); it++) {
+ StringType argt = * static_cast<StringType *>(*it);
+ string arg = argt;
+ tempOutputFile << " " << arg;
+ }
+ }
+ tempOutputFile << endl;
+
+ // Remove the node file
+ tempOutputFile << "rm $LIBBATCH_NODEFILE" << endl;
+
+ tempOutputFile.flush();
+ tempOutputFile.close();
+
+ LOG("Batch script file generated is: " << TmpFileName.c_str());
+
+ string remoteFileName = rootNameToExecute + "_Batch.sh";
+ int status = _protocol.copyFile(TmpFileName, "", "",
+ workDir + "/" + remoteFileName,
+ _hostname, _username);
+ if (status)
+ throw RunTimeException("Error of connection on remote host");
+ return remoteFileName;
+ }
+
+ std::string BatchManager_LSF::getWallTime(const long edt)
+ {
+ long h, m;
+ h = edt / 60;
+ m = edt - h*60;
+ ostringstream oss;
+ if( m >= 10 )
+ oss << h << ":" << m;
+ else
+ oss << h << ":0" << m;
+ return oss.str();
+ }
+
+ std::string BatchManager_LSF::getHomeDir(std::string tmpdir)
+ {
+ std::string home;
+ int idx = tmpdir.find("Batch/");
+ std::string filelogtemp = tmpdir.substr(idx+6, tmpdir.length());
+ filelogtemp = "/tmp/logs" + filelogtemp + "_home";
+
+ string subCommand = string("echo $HOME");
+ string command = _protocol.getExecCommand(subCommand, _hostname, _username) + " > " + filelogtemp;
+ LOG(command);
+ int status = system(command.c_str());
+ if (status)
+ throw RunTimeException("Error of launching home command on remote host");
+
+ std::ifstream file_home(filelogtemp.c_str());
+ std::getline(file_home, home);
+ file_home.close();
+ return home;
+ }
+
+}
